r-bioc-rbgl →
1.62.1+dfsg-1 →
armhf → 2019-11-17 11:46:13
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-bioc-rbgl 1.62.1+dfsg-1 (armhf) Sun, 17 Nov 2019 10:50:22 +0000 |
+==============================================================================+
Package: r-bioc-rbgl
Version: 1.62.1+dfsg-1
Source Version: 1.62.1+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-6a92c93c-986f-4e91-9bf5-ec88d4b5c4e6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 27s (891 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rbgl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 384 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.62.1+dfsg-1 (dsc) [2142 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.62.1+dfsg-1 (tar) [376 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.62.1+dfsg-1 (diff) [6788 B]
Fetched 384 kB in 1s (528 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-CSA47j/r-bioc-rbgl-1.62.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-CSA47j' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WpZspg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WpZspg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WpZspg/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2773 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (78.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12220 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-graph, r-cran-bh, libboost-dev
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-graph, r-cran-bh, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rbgl-dummy' in '/<<BUILDDIR>>/resolver-WpZspg/apt_archive/sbuild-build-depends-r-bioc-rbgl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rbgl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ Packages [610 B]
Fetched 2470 B in 1s (3225 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rbgl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libboost-dev libboost1.67-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-8-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph r-cran-bh
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-sparsem r-bioc-rbgl r-cran-cluster
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-xml libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libboost-dev libboost1.67-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-8-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph r-cran-bh
sbuild-build-depends-r-bioc-rbgl-dummy sensible-utils ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 138 newly installed, 0 to remove and 4 not upgraded.
Need to get 93.4 MB of archives.
After this operation, 374 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WpZspg/apt_archive ./ sbuild-build-depends-r-bioc-rbgl-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-2 [136 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-3 [1137 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-8 [107 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
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Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1+b1 [297 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-17+rpi1 [231 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-8 [1568 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1.1 [62.8 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0-1 [249 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.1-7 [24.3 MB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-17+rpi1 [279 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-17+rpi1 [7451 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3+rpi1 [1432 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.8.0-8 [112 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-8 [2839 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20191019-1 [284 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20191019-1 [940 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-3 [114 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-8-0 armhf 10.32-5 [184 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.1-7 [4488 B]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20190917 [36.2 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b1 [4464 B]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-graph armhf 1.64.0-1 [1630 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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Setting up x11-common (1:7.7+20) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libnghttp2-14:armhf (1.39.2-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
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Setting up openssl (1.1.1d-2) ...
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Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up xdg-utils (1.1.3-1) ...
Setting up libblas-dev:armhf (3.8.0-8) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
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Setting up libfile-stripnondeterminism-perl (1.6.1-1) ...
Setting up r-cran-bh (1.66.0-1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.8.0-8) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.1+20191019-1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libtool (2.4.6-11) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up libpng-dev:armhf (1.6.37-1) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libgfortran-9-dev:armhf (9.2.1-17+rpi1) ...
Setting up m4 (1.4.18-4) ...
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Setting up libreadline-dev:armhf (8.0-3) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libpcre2-posix0:armhf (10.32-5) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up liblapack-dev:armhf (3.8.0-8) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-2) ...
Setting up groff-base (1.22.4-3) ...
Setting up libncurses5-dev:armhf (6.1+20191019-1) ...
Setting up libcurl4:armhf (7.66.0-1+b1) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libharfbuzz0b:armhf (2.6.4-1+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up gettext (0.19.8.1-9) ...
Setting up libpcre2-dev:armhf (10.32-5) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up gfortran-9 (9.2.1-17+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:9.2.1-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.9-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up r-base-core (3.6.1-7) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.32.0-1) ...
Setting up r-base-dev (3.6.1-7) ...
Setting up r-bioc-graph (1.64.0-1) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-r (20190917) ...
Setting up sbuild-build-depends-r-bioc-rbgl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-17+rpi1 gcc-9_9.2.1-17+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2+rpi1 binutils-arm-linux-gnueabihf_2.33.1-2+rpi1 binutils-common_2.33.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-17+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-r_20190917 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-17+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-9_9.2.1-17+rpi1 gcc-9-base_9.2.1-17+rpi1 gettext_0.19.8.1-9 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libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack-dev_3.8.0-8 liblapack3_3.8.0-8 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20191019-1 libncurses5-dev_6.1+20191019-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-7+b1 libpangocairo-1.0-0_1.42.4-7+b1 libpangoft2-1.0-0_1.42.4-7+b1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 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libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b2 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1+b3 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.6 openssl_1.1.1d-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-biocgenerics_0.32.0-1 r-bioc-graph_1.64.0-1 r-cran-bh_1.66.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rbgl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.34-0.1 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 8 22:00:45 2019 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rbgl_1.62.1+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rbgl in /<<BUILDDIR>>/r-bioc-rbgl-1.62.1+dfsg
dpkg-source: info: unpacking r-bioc-rbgl_1.62.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rbgl_1.62.1+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying boost-1.61.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-6a92c93c-986f-4e91-9bf5-ec88d4b5c4e6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rbgl
dpkg-buildpackage: info: source version 1.62.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit
I: R Package: RBGL Version: 1.62.1
I: Building using R version 3.6.1-7
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Fri, 08 Nov 2019 22:47:22 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-rbgl-1.62.1\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rbgl-1.62.1\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 08 Nov 2019 22:47:22 +0100'"
* installing *source* package 'RBGL' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.62.1+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bbc.cpp -o bbc.o
bbc.cpp: In function 'EdgeIterator max_element(EdgeIterator, EdgeIterator, EdgeCentralityCompare)':
bbc.cpp:25:1: note: parameter passing for argument of type 'EdgeCentralityCompare' {aka 'boost::indirect_cmp<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>, std::less<double> >'} changed in GCC 7.1
25 | max_element(EdgeIterator __first, EdgeIterator __last, EdgeCentralityCompare __comp)
| ^~~~~~~~~~~
In file included from /usr/include/boost/graph/bc_clustering.hpp:12,
from bbc.cpp:37:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_unweighted_shortest_paths]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
288 | brandes_betweenness_centrality_impl(const Graph& g,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:452:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
452 | brandes_betweenness_centrality_dispatch2(const Graph& g,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
377 | detail::graph::brandes_betweenness_centrality_impl(g, centrality,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
378 | edge_centrality_map,
| ~~~~~~~~~~~~~~~~~~~~
379 | incoming, distance,
| ~~~~~~~~~~~~~~~~~~~
380 | dependency, path_count,
| ~~~~~~~~~~~~~~~~~~~~~~~
381 | vertex_index,
| ~~~~~~~~~~~~~
382 | shortest_paths);
| ~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
In file included from bbc.cpp:37:
/usr/include/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap) [with MutableGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; Done = clustering_threshold; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/bc_clustering.hpp:109:1: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
109 | betweenness_centrality_clustering(MutableGraph& g, Done done,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bc_clustering.hpp: In function 'SEXPREC* BGL_betweenness_centrality_clustering(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/bc_clustering.hpp:144:36: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
144 | betweenness_centrality_clustering(g, done, edge_centrality,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
145 | get(vertex_index, g));
| ~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/graph/bc_clustering.hpp:12,
from bbc.cpp:37:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
288 | brandes_betweenness_centrality_impl(const Graph& g,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, WeightMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
416 | brandes_betweenness_centrality_dispatch2(const Graph& g,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
404 | detail::graph::brandes_betweenness_centrality_impl(g, centrality,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
405 | edge_centrality_map,
| ~~~~~~~~~~~~~~~~~~~~
406 | incoming, distance,
| ~~~~~~~~~~~~~~~~~~~
407 | dependency, path_count,
| ~~~~~~~~~~~~~~~~~~~~~~~
408 | vertex_index,
| ~~~~~~~~~~~~~
409 | shortest_paths);
| ~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'SEXPREC* BGL_brandes_betweenness_centrality(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
492 | brandes_betweenness_centrality_dispatch2(g, centrality, edge_centrality_map,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | weight_map, vertex_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cliques.cpp -o cliques.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clusteringCoef.cpp -o clusteringCoef.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dominatorTree.cpp -o dominatorTree.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hcs.cpp -o hcs.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c incrConnComp.cpp -o incrConnComp.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interfaces.cpp -o interfaces.o
In file included from interfaces.cpp:8:
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::pair<unsigned int, OutputIterator> boost::detail::biconnected_components_impl(const Graph&, ComponentMap, OutputIterator, VertexIndexMap, DiscoverTimeMap, LowPointMap, PredecessorMap, DFSVisitor) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; OutputIterator = boost::graph_detail::dummy_output_iterator; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; DiscoverTimeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; LowPointMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; PredecessorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; DFSVisitor = boost::dfs_visitor<>]':
/usr/include/boost/graph/biconnected_components.hpp:162:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
162 | biconnected_components_impl(const Graph & g, ComponentMap comp,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::size_t boost::biconnected_components(const Graph&, ComponentMap) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/biconnected_components.hpp:391:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
391 | biconnected_components(const Graph& g, ComponentMap comp)
| ^~~~~~~~~~~~~~~~~~~~~~
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:264:47: note: parameter passing for argument of type 'boost::detail::adj_list_any_edge_pmap::bind_<R_adjacency_list<boost::undirectedS, double>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>::type' {aka 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>'} changed in GCC 7.1
264 | int num_comps = biconnected_components(g, component);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minST.cpp -o minST.o
In file included from minST.cpp:2:
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
48 | kruskal_mst_impl(const Graph& G,
| ^~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
111 | detail::kruskal_mst_impl
| ~~~~~~~~~~~~~~~~~~~~~~~~
112 | (g, spanning_tree_edges,
| ^~~~~~~~~~~~~~~~~~~~~~~~
113 | make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
114 | make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
115 | get(edge_weight, g));
| ~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
111 | detail::kruskal_mst_impl
| ~~~~~~~~~~~~~~~~~~~~~~~~
112 | (g, spanning_tree_edges,
| ^~~~~~~~~~~~~~~~~~~~~~~~
113 | make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
114 | make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
115 | get(edge_weight, g));
| ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/graph/prim_minimum_spanning_tree.hpp:15,
from minST.cpp:3:
/usr/include/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::dijkstra_shortest_paths(const VertexListGraph&, SourceInputIter, SourceInputIter, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistInf, DistZero, DijkstraVisitor, const boost::bgl_named_params<T, Tag, Base>&, typename boost::enable_if_c<boost::is_base_and_derived<boost::vertex_list_graph_tag, typename boost::graph_traits<Graph>::traversal_category>::value, boost::graph::detail::no_parameter>::type) [with VertexListGraph = R_adjacency_list<boost::undirectedS, double>; SourceInputIter = unsigned int*; DijkstraVisitor = boost::dijkstra_visitor<>; PredecessorMap = unsigned int*; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, double, double&>; WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Compare = std::less<double>; Combine = boost::detail::_project2nd<double, double>; DistInf = double; DistZero = double; T = char; Tag = boost::detail::unused_tag_type; Base = boost::no_property]':
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:412:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, double, double&>' changed in GCC 7.1
412 | dijkstra_shortest_paths
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:412:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/dijkstra_shortest_paths.hpp: In function 'SEXPREC* BGL_PRIM_U(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:515:28: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, double, double&>' changed in GCC 7.1
515 | dijkstra_shortest_paths(g, s_begin, s_end, predecessor, distance,
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | weight, index_map,
| ~~~~~~~~~~~~~~~~~~
517 | compare, combine, inf, zero, vis,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
518 | no_named_parameters());
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:515:28: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mincut.cpp -o mincut.o
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In constructor 'boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::push_relabel(Graph&, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>; FlowValue = double]':
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
114 | push_relabel(Graph& g_,
| ^~~~~~~~~~~~
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
79 | edmonds_karp_max_flow
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
/usr/include/boost/graph/push_relabel_max_flow.hpp:700:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
700 | algo(g, cap, res, rev, src, sink, index_map);
| ^~~~
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
158 | return edmonds_karp_max_flow
| ~~~~~~~~~~~~~~~~~~~~~
159 | (g, src, sink,
| ^~~~~~~~~~~~~~
160 | choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
161 | choose_pmap(get_param(params, edge_residual_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
162 | g, edge_residual_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
163 | choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
164 | make_iterator_property_map(color_vec.begin(), choose_const_pmap
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
165 | (get_param(params, vertex_index),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
166 | g, vertex_index), color_vec[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
167 | pred);
| ~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ordering.cpp -o ordering.o
In file included from /usr/include/c++/9/list:64,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:41,
from ordering.cpp:1:
/usr/include/c++/9/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::merge(std::__cxx11::list<_Tp, _Alloc>&&, _StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/9/bits/list.tcc:439:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
439 | list<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::sort(_StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/9/bits/list.tcc:584:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
584 | list<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/list:63,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:41,
from ordering.cpp:1:
/usr/include/c++/9/bits/stl_list.h:1781:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
1781 | { merge(std::move(__x), __comp); }
| ^~~~~
/usr/include/c++/9/bits/stl_list.h:1781:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
1781 | { merge(std::move(__x), __comp); }
| ^~~~~
In file included from ordering.cpp:8:
/usr/include/boost/graph/sloan_ordering.hpp: In function 'OutputIterator boost::sloan_ordering(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, OutputIterator, ColorMap, DegreeMap, PriorityMap, Weight, Weight) [with Graph = boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >; OutputIterator = __gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >; ColorMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, boost::default_color_type, boost::default_color_type&, boost::vertex_color_t>; DegreeMap = boost::degree_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > > >; PriorityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>; Weight = int]':
/usr/include/boost/graph/sloan_ordering.hpp:257:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
257 | sloan_ordering(Graph& g,
| ^~~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp:318:7: note: parameter passing for argument of type 'Compare' {aka 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >'} changed in GCC 7.1
318 | priority_list.sort(comp); //Orders the elements in the priority list in an ascending manner
| ^~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/sloan_ordering.hpp:427:26: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
427 | return sloan_ordering(G, s, e, permutation, color, degree, priority, W1, W2);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c planar.cpp -o planar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registerSigHandlers.cpp -o registerSigHandlers.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shortestPath.cpp -o shortestPath.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
91 | bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from shortestPath.cpp:3:
/usr/include/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::dijkstra_dispatch1(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, DistanceMap, WeightMap, IndexMap, const Params&) [with VertexListGraph = R_adjacency_list<boost::directedS, double>; DistanceMap = double*; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Params = boost::bgl_named_params<double*, boost::vertex_distance_t, boost::bgl_named_params<unsigned int*, boost::vertex_predecessor_t, boost::no_property> >]':
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:579:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
579 | dijkstra_dispatch1
| ^~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:579:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/dijkstra_shortest_paths.hpp: In function 'SEXPREC* BGL_dijkstra_shortest_paths_D(SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/dijkstra_shortest_paths.hpp:610:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
609 | detail::dijkstra_dispatch1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
610 | (g, s,
| ^~~~~~
611 | get_param(params, vertex_distance),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
612 | choose_const_pmap(get_param(params, edge_weight), g, edge_weight),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
613 | choose_const_pmap(get_param(params, vertex_index), g, vertex_index),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
614 | params);
| ~~~~~~~
In file included from shortestPath.cpp:4:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
40 | johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
108 | if (bellman_ford_shortest_paths
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
109 | (g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* BGL_johnson_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
161 | return johnson_all_pairs_shortest_paths
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
162 | (g, D, id, w,
| ^~~~~~~~~~~~~
163 | choose_param(get_param(params, distance_compare_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
164 | std::less<WT>()),
| ~~~~~~~~~~~~~~~~~
165 | choose_param(get_param(params, distance_combine_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
166 | closed_plus<WT>()),
| ~~~~~~~~~~~~~~~~~~~
167 | choose_param(get_param(params, distance_inf_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
168 | std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
169 | choose_param(get_param(params, distance_zero_t()), WT()) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sna.cpp -o sna.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>' changed in GCC 7.1
91 | bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from sna.cpp:4:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
79 | edmonds_karp_max_flow
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
158 | return edmonds_karp_max_flow
| ~~~~~~~~~~~~~~~~~~~~~
159 | (g, src, sink,
| ^~~~~~~~~~~~~~
160 | choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
161 | choose_pmap(get_param(params, edge_residual_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
162 | g, edge_residual_capacity),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
163 | choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
164 | make_iterator_property_map(color_vec.begin(), choose_const_pmap
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
165 | (get_param(params, vertex_index),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
166 | g, vertex_index), color_vec[0]),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
167 | pred);
| ~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from sna.cpp:3:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
40 | johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
108 | if (bellman_ford_shortest_paths
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
109 | (g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* kCliques(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
161 | return johnson_all_pairs_shortest_paths
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
162 | (g, D, id, w,
| ^~~~~~~~~~~~~
163 | choose_param(get_param(params, distance_compare_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
164 | std::less<WT>()),
| ~~~~~~~~~~~~~~~~~
165 | choose_param(get_param(params, distance_combine_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
166 | closed_plus<WT>()),
| ~~~~~~~~~~~~~~~~~~~
167 | choose_param(get_param(params, distance_inf_t()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
168 | std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
169 | choose_param(get_param(params, distance_zero_t()), WT()) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transitive_closure.cpp -o transitive_closure.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wavefront.cpp -o wavefront.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.62.1+dfsg/src'
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installing to /<<BUILDDIR>>/r-bioc-rbgl-1.62.1+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library/00LOCK-r-bioc-rbgl-1.62.1+dfsg/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)
I: Using r-bioc-graph for Depends:graph
I: Using r-cran-runit for Recommends:runit
W: Cannot find a debian package for Suggests:Rgraphviz
I: Using r-cran-xml for Suggests:XML
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
I: BioConductor API version: r-api-bioc-3.10
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dpkg-deb: building package 'r-bioc-rbgl-dbgsym' in '../r-bioc-rbgl-dbgsym_1.62.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rbgl' in '../r-bioc-rbgl_1.62.1+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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Build finished at 2019-11-17T11:46:00Z
Finished
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I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rbgl_1.62.1+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Fri, 08 Nov 2019 22:47:22 +0100
Source: r-bioc-rbgl
Binary: r-bioc-rbgl r-bioc-rbgl-dbgsym
Architecture: armhf
Version: 1.62.1+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-rbgl - R interface to the graph algorithms contained in the BOOST librar
Changes:
r-bioc-rbgl (1.62.1+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Fixed debian/watch for BioConductor
* debhelper-compat 12
* Standards-Version: 4.4.1
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rbgl-dbgsym_1.62.1+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 6161876 bytes: control archive=544 bytes.
393 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rbgl-dbgsym
Source: r-bioc-rbgl
Version: 1.62.1+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6241
Depends: r-bioc-rbgl (= 1.62.1+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rbgl
Build-Ids: 636e99ff68a4d1bcdd5516baab89b9affff1f77d
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lrwxrwxrwx root/root 0 2019-11-08 21:47 ./usr/share/doc/r-bioc-rbgl-dbgsym -> r-bioc-rbgl
r-bioc-rbgl_1.62.1+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 756504 bytes: control archive=2744 bytes.
692 bytes, 15 lines control
5872 bytes, 75 lines md5sums
Package: r-bioc-rbgl
Version: 1.62.1+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1559
Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-graph, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Recommends: r-cran-runit
Suggests: r-cran-xml, r-bioc-biocgenerics
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/RBGL/
Description: R interface to the graph algorithms contained in the BOOST library
RBGL is part of the BioConductor GNU R suite. It is a fairly extensive and
comprehensive interface to the graph algorithms contained in the BOOST C++
libraries.
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Build Architecture: armhf
Build-Space: 16084
Build-Time: 1120
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 2162
Job: r-bioc-rbgl_1.62.1+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rbgl
Package-Time: 3338
Source-Version: 1.62.1+dfsg-1
Space: 16084
Status: successful
Version: 1.62.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2019-11-17T11:46:00Z
Build needed 00:55:38, 16084k disc space