r-bioc-rbgl →
1.60.0+dfsg-1 →
armhf → 2019-08-22 11:27:09
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| r-bioc-rbgl 1.60.0+dfsg-1 (armhf) Thu, 22 Aug 2019 11:01:39 +0000 |
+==============================================================================+
Package: r-bioc-rbgl
Version: 1.60.0+dfsg-1
Source Version: 1.60.0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-c22743a5-d81d-4afb-8e9e-fed374056f9e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.5 MB in 25s (994 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rbgl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 386 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.60.0+dfsg-1 (dsc) [2137 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.60.0+dfsg-1 (tar) [377 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-rbgl 1.60.0+dfsg-1 (diff) [6784 B]
Fetched 386 kB in 0s (1630 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-62Z54g/r-bioc-rbgl-1.60.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-62Z54g' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-aW86qU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-aW86qU/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-aW86qU/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2895 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-aW86qU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 87 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12044 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-bioc-graph, r-cran-bh, libboost-dev
Filtered Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-bioc-graph, r-cran-bh, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rbgl-dummy' in '/<<BUILDDIR>>/resolver-aW86qU/apt_archive/sbuild-build-depends-r-bioc-rbgl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rbgl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Packages [605 B]
Fetched 2465 B in 1s (3128 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-aW86qU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install r-bioc-rbgl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils bzip2 ca-certificates
cpp-8 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-8 gcc-8 gcc-8-base
gcc-9-base gettext gettext-base gfortran gfortran-8 groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3
libboost-dev libboost1.67-dev libbsd0 libbz2-1.0 libbz2-dev libcairo2
libcc1-0 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran5
libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
libncurses6 libncursesw6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev libreadline8 librtmp1 libsigsegv2 libsm6 libssh2-1
libssl1.1 libstdc++-8-dev libstdc++6 libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5 libtinfo6 libtk8.6
libtool libubsan1 libuchardet0 libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph r-cran-bh
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation bzip2-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc
libgfortran5-dbg libcoarrays-dev groff liblapack-doc libboost-doc
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc
libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-sparsem r-bioc-rbgl r-cran-cluster
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-xml libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-9-base gettext
gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost1.67-dev
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-8-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev libreadline8 librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph r-cran-bh
sbuild-build-depends-r-bioc-rbgl-dummy sensible-utils ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libbz2-1.0 libcc1-0
libgcc-8-dev libgcc1 libgomp1 libncursesw6 libstdc++-8-dev libstdc++6
libtinfo6 libubsan1
17 upgraded, 138 newly installed, 0 to remove and 70 not upgraded.
Need to get 116 MB of archives.
After this operation, 357 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aW86qU/apt_archive ./ sbuild-build-depends-r-bioc-rbgl-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.1.0-10+rpi1 [190 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:9.1.0-10+rpi1 [37.0 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 9.1.0-10+rpi1 [413 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.6.1-1 [1248 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf bzip2 armhf 1.0.6-9.2 [46.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libbz2-1.0 armhf 1.0.6-9.2 [43.1 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20190803-1 [104 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 9.1.0-10+rpi1 [112 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf g++-8 armhf 8.3.0-19+rpi1 [7184 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gcc-8 armhf 8.3.0-19+rpi1 [6893 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf cpp-8 armhf 8.3.0-19+rpi1 [6487 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 9.1.0-10+rpi1 [38.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 9.1.0-10+rpi1 [73.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 9.1.0-10+rpi1 [8164 B]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.1.0-10+rpi1 [347 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-8-dev armhf 8.3.0-19+rpi1 [1551 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libgcc-8-dev armhf 8.3.0-19+rpi1 [595 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf gcc-8-base armhf 8.3.0-19+rpi1 [192 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libreadline8 armhf 8.0-2 [137 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1c-1 [804 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.5.0-1 [14.1 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.5.3 [1036 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.1.0-10+rpi1 [230 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-1 [77.2 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.9.1-4 [317 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.65.3-1 [300 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-2 [170 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-2 [35.9 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-2 [50.9 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7 [168 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-8 [70.5 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.0-1 [1268 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7 [61.9 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7 [51.6 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-8-0 armhf 10.32-5 [184 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.0.10+git190818-1 [240 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.1-4 [24.3 MB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-8-dev armhf 8.3.0-19+rpi1 [249 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf gfortran-8 armhf 8.3.0-19+rpi1 [6855 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:8.3.0-1+rpi2 [1428 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20190803-1 [281 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20190803-1 [940 B]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-2 [114 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.6-9.2 [27.7 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.1-4 [4484 B]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20190807 [35.9 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2 [4184 B]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.30.0-3 [634 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-graph armhf 1.62.0-1 [1629 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 116 MB in 39s (2942 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12044 files and directories currently installed.)
Preparing to unpack .../libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../libtinfo5_6.1+20190803-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20190803-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package gcc-9-base:armhf.
Preparing to unpack .../gcc-9-base_9.1.0-10+rpi1_armhf.deb ...
Unpacking gcc-9-base:armhf (9.1.0-10+rpi1) ...
Setting up gcc-9-base:armhf (9.1.0-10+rpi1) ...
(Reading database ... 12183 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a9.1.0-10+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:9.1.0-10+rpi1) over (1:8.3.0-6+rpi1) ...
Setting up libgcc1:armhf (1:9.1.0-10+rpi1) ...
(Reading database ... 12183 files and directories currently installed.)
Preparing to unpack .../libstdc++6_9.1.0-10+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Setting up libstdc++6:armhf (9.1.0-10+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12183 files and directories currently installed.)
Preparing to unpack .../0-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../1-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../2-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../3-man-db_2.8.6.1-1_armhf.deb ...
Unpacking man-db (2.8.6.1-1) ...
Preparing to unpack .../4-bzip2_1.0.6-9.2_armhf.deb ...
Unpacking bzip2 (1.0.6-9.2) over (1.0.6-9.1) ...
Preparing to unpack .../5-libbz2-1.0_1.0.6-9.2_armhf.deb ...
Unpacking libbz2-1.0:armhf (1.0.6-9.2) over (1.0.6-9.1) ...
Setting up libbz2-1.0:armhf (1.0.6-9.2) ...
(Reading database ... 12691 files and directories currently installed.)
Preparing to unpack .../libtinfo6_6.1+20190803-1_armhf.deb ...
Unpacking libtinfo6:armhf (6.1+20190803-1) over (6.1+20181013-2) ...
Setting up libtinfo6:armhf (6.1+20190803-1) ...
(Reading database ... 12691 files and directories currently installed.)
Preparing to unpack .../libncursesw6_6.1+20190803-1_armhf.deb ...
Unpacking libncursesw6:armhf (6.1+20190803-1) over (6.1+20181013-2) ...
Setting up libncursesw6:armhf (6.1+20190803-1) ...
(Reading database ... 12691 files and directories currently installed.)
Preparing to unpack .../000-libubsan1_9.1.0-10+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../001-g++-8_8.3.0-19+rpi1_armhf.deb ...
Unpacking g++-8 (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../002-gcc-8_8.3.0-19+rpi1_armhf.deb ...
Unpacking gcc-8 (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../003-cpp-8_8.3.0-19+rpi1_armhf.deb ...
Unpacking cpp-8 (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../004-libcc1-0_9.1.0-10+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../005-libgomp1_9.1.0-10+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../006-libatomic1_9.1.0-10+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../007-libasan5_9.1.0-10+rpi1_armhf.deb ...
Unpacking libasan5:armhf (9.1.0-10+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../008-libstdc++-8-dev_8.3.0-19+rpi1_armhf.deb ...
Unpacking libstdc++-8-dev:armhf (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../009-libgcc-8-dev_8.3.0-19+rpi1_armhf.deb ...
Unpacking libgcc-8-dev:armhf (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Preparing to unpack .../010-gcc-8-base_8.3.0-19+rpi1_armhf.deb ...
Unpacking gcc-8-base:armhf (8.3.0-19+rpi1) over (8.3.0-6+rpi1) ...
Selecting previously unselected package libreadline8:armhf.
Preparing to unpack .../011-libreadline8_8.0-2_armhf.deb ...
Unpacking libreadline8:armhf (8.0-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../012-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../013-libmagic-mgc_1%3a5.37-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.37-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../014-libmagic1_1%3a5.37-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.37-5) ...
Selecting previously unselected package file.
Preparing to unpack .../015-file_1%3a5.37-5_armhf.deb ...
Unpacking file (1:5.37-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../016-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../017-libswitch-perl_2.17-2_all.deb ...
Unpacking libswitch-perl (2.17-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../018-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../019-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../020-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../021-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../022-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../023-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../024-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../025-libssl1.1_1.1.1c-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1c-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../026-openssl_1.1.1c-1_armhf.deb ...
Unpacking openssl (1.1.1c-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../027-ca-certificates_20190110_all.deb ...
Unpacking ca-certificates (20190110) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../028-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../029-libtool_2.4.6-9_all.deb ...
Unpacking libtool (2.4.6-9) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../030-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../031-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../032-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../033-libfile-stripnondeterminism-perl_1.5.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.5.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../034-dh-strip-nondeterminism_1.5.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.5.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../035-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../036-dwz_0.13-1_armhf.deb ...
Unpacking dwz (0.13-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../037-libglib2.0-0_2.60.6-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.60.6-2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../038-libicu63_63.2-2_armhf.deb ...
Unpacking libicu63:armhf (63.2-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../039-libxml2_2.9.4+dfsg1-7+b2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../040-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../041-libncurses6_6.1+20190803-1_armhf.deb ...
Unpacking libncurses6:armhf (6.1+20190803-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../042-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../043-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../044-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../045-debhelper_12.5.3_all.deb ...
Unpacking debhelper (12.5.3) ...
Selecting previously unselected package zip.
Preparing to unpack .../046-zip_3.0-11_armhf.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../047-unzip_6.0-25_armhf.deb ...
Unpacking unzip (6.0-25) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../048-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../049-libpaper-utils_1.1.28_armhf.deb ...
Unpacking libpaper-utils (1.1.28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../050-xdg-utils_1.1.3-1_all.deb ...
Unpacking xdg-utils (1.1.3-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../051-libgfortran5_9.1.0-10+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (9.1.0-10+rpi1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../052-libblas3_3.8.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.8.0-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../053-libexpat1_2.2.7-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.7-1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../054-libpng16-16_1.6.37-1_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-1) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../055-libfreetype6_2.9.1-4_armhf.deb ...
Unpacking libfreetype6:armhf (2.9.1-4) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../056-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../057-fontconfig-config_2.13.1-2_all.deb ...
Unpacking fontconfig-config (2.13.1-2) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../058-libfontconfig1_2.13.1-2_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-2) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../059-libpixman-1-0_0.36.0-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.36.0-1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../060-libxau6_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../061-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../062-libxcb1_1.13.1-2_armhf.deb ...
Unpacking libxcb1:armhf (1.13.1-2) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../063-libx11-data_2%3a1.6.7-1_all.deb ...
Unpacking libx11-data (2:1.6.7-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../064-libx11-6_2%3a1.6.7-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.7-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../065-libxcb-render0_1.13.1-2_armhf.deb ...
Unpacking libxcb-render0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../066-libxcb-shm0_1.13.1-2_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.13.1-2) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../067-libxext6_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../068-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../069-libcairo2_1.16.0-4_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-4) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../070-libkeyutils1_1.6-6_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6-6) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../071-libkrb5support0_1.17-6+b1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../072-libk5crypto3_1.17-6+b1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-6+b1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../073-libkrb5-3_1.17-6+b1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../074-libgssapi-krb5-2_1.17-6+b1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../075-libnghttp2-14_1.39.2-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.39.2-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../076-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../077-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../078-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../079-libcurl4_7.65.3-1_armhf.deb ...
Unpacking libcurl4:armhf (7.65.3-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../080-x11-common_1%3a7.7+19_all.deb ...
Unpacking x11-common (1:7.7+19) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../081-libice6_2%3a1.0.9-2_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../082-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../083-liblapack3_3.8.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.8.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../084-fontconfig_2.13.1-2_armhf.deb ...
Unpacking fontconfig (2.13.1-2) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../085-libfribidi0_1.0.5-3.1_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.5-3.1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../086-libthai-data_0.1.28-2_all.deb ...
Unpacking libthai-data (0.1.28-2) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../087-libdatrie1_0.2.12-2_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.12-2) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../088-libthai0_0.1.28-2_armhf.deb ...
Unpacking libthai0:armhf (0.1.28-2) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../089-libpango-1.0-0_1.42.4-7_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.42.4-7) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../090-libgraphite2-3_1.3.13-8_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.13-8) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../091-libharfbuzz0b_2.6.0-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (2.6.0-1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../092-libpangoft2-1.0-0_1.42.4-7_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.42.4-7) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../093-libpangocairo-1.0-0_1.42.4-7_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.42.4-7) ...
Selecting previously unselected package libpcre2-8-0:armhf.
Preparing to unpack .../094-libpcre2-8-0_10.32-5_armhf.deb ...
Unpacking libpcre2-8-0:armhf (10.32-5) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../095-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../096-libtcl8.6_8.6.9+dfsg-2_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.9+dfsg-2) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../097-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../098-libwebp6_0.6.1-2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../099-libtiff5_4.0.10+git190818-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.10+git190818-1) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../100-libxft2_2.3.2-2_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-2) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../101-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../102-libtk8.6_8.6.9-2_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.9-2) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../103-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../104-r-base-core_3.6.1-4_armhf.deb ...
Unpacking r-base-core (3.6.1-4) ...
Selecting previously unselected package libgfortran-8-dev:armhf.
Preparing to unpack .../105-libgfortran-8-dev_8.3.0-19+rpi1_armhf.deb ...
Unpacking libgfortran-8-dev:armhf (8.3.0-19+rpi1) ...
Selecting previously unselected package gfortran-8.
Preparing to unpack .../106-gfortran-8_8.3.0-19+rpi1_armhf.deb ...
Unpacking gfortran-8 (8.3.0-19+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../107-gfortran_4%3a8.3.0-1+rpi2_armhf.deb ...
Unpacking gfortran (4:8.3.0-1+rpi2) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../108-libblas-dev_3.8.0-2_armhf.deb ...
Unpacking libblas-dev:armhf (3.8.0-2) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../109-liblapack-dev_3.8.0-2_armhf.deb ...
Unpacking liblapack-dev:armhf (3.8.0-2) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../110-libncurses-dev_6.1+20190803-1_armhf.deb ...
Unpacking libncurses-dev:armhf (6.1+20190803-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../111-libncurses5-dev_6.1+20190803-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.1+20190803-1) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../112-libreadline-dev_8.0-2_armhf.deb ...
Unpacking libreadline-dev:armhf (8.0-2) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../113-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../114-libjpeg-dev_1%3a1.5.2-2_all.deb ...
Unpacking libjpeg-dev (1:1.5.2-2) ...
Selecting previously unselected package libpcre2-16-0:armhf.
Preparing to unpack .../115-libpcre2-16-0_10.32-5_armhf.deb ...
Unpacking libpcre2-16-0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-32-0:armhf.
Preparing to unpack .../116-libpcre2-32-0_10.32-5_armhf.deb ...
Unpacking libpcre2-32-0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-posix0:armhf.
Preparing to unpack .../117-libpcre2-posix0_10.32-5_armhf.deb ...
Unpacking libpcre2-posix0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-dev:armhf.
Preparing to unpack .../118-libpcre2-dev_10.32-5_armhf.deb ...
Unpacking libpcre2-dev:armhf (10.32-5) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../119-libpcre16-3_2%3a8.39-12_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-12) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../120-libpcre32-3_2%3a8.39-12_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-12) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../121-libpcrecpp0v5_2%3a8.39-12_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-12) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../122-libpcre3-dev_2%3a8.39-12_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-12) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../123-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../124-libpng-dev_1.6.37-1_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.37-1) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../125-libbz2-dev_1.0.6-9.2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-9.2) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../126-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../127-icu-devtools_63.2-2_armhf.deb ...
Unpacking icu-devtools (63.2-2) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../128-libicu-dev_63.2-2_armhf.deb ...
Unpacking libicu-dev:armhf (63.2-2) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../129-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package xauth.
Preparing to unpack .../130-xauth_1%3a1.0.10-1_armhf.deb ...
Unpacking xauth (1:1.0.10-1) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../131-pkg-config_0.29-6_armhf.deb ...
Unpacking pkg-config (0.29-6) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../132-r-base-dev_3.6.1-4_all.deb ...
Unpacking r-base-dev (3.6.1-4) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../133-libfile-which-perl_1.23-1_all.deb ...
Unpacking libfile-which-perl (1.23-1) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../134-dh-r_20190807_all.deb ...
Unpacking dh-r (20190807) ...
Selecting previously unselected package libboost1.67-dev:armhf.
Preparing to unpack .../135-libboost1.67-dev_1.67.0-13_armhf.deb ...
Unpacking libboost1.67-dev:armhf (1.67.0-13) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../136-libboost-dev_1.67.0.2_armhf.deb ...
Unpacking libboost-dev:armhf (1.67.0.2) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../137-r-bioc-biocgenerics_0.30.0-3_all.deb ...
Unpacking r-bioc-biocgenerics (0.30.0-3) ...
Selecting previously unselected package r-bioc-graph.
Preparing to unpack .../138-r-bioc-graph_1.62.0-1_armhf.deb ...
Unpacking r-bioc-graph (1.62.0-1) ...
Selecting previously unselected package r-cran-bh.
Preparing to unpack .../139-r-cran-bh_1.66.0-1_all.deb ...
Unpacking r-cran-bh (1.66.0-1) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-rbgl-dummy.
Preparing to unpack .../140-sbuild-build-depends-r-bioc-rbgl-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-rbgl-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.7-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-12) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libgraphite2-3:armhf (1.3.13-8) ...
Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libpcre16-3:armhf (2:8.39-12) ...
Setting up libdatrie1:armhf (0.2.12-2) ...
Setting up libmagic-mgc (1:5.37-5) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:armhf (2.60.6-2) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1c-1) ...
Setting up unzip (6.0-25) ...
Setting up libreadline8:armhf (8.0-2) ...
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libnghttp2-14:armhf (1.39.2-1) ...
Setting up libmagic1:armhf (1:5.37-5) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.37-5) ...
Setting up libgomp1:armhf (9.1.0-10+rpi1) ...
Setting up bzip2 (1.0.6-9.2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.32-5) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libasan5:armhf (9.1.0-10+rpi1) ...
Setting up zip (3.0-11) ...
Setting up autotools-dev (20180224.1) ...
Setting up libpcre2-32-0:armhf (10.32-5) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libswitch-perl (2.17-2) ...
Setting up libx11-data (2:1.6.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libfribidi0:armhf (1.0.5-3.1) ...
Setting up libpng16-16:armhf (1.6.37-1) ...
Setting up libpcre32-3:armhf (2:8.39-12) ...
Setting up libatomic1:armhf (9.1.0-10+rpi1) ...
Setting up gcc-8-base:armhf (8.3.0-19+rpi1) ...
Setting up libtcl8.6:armhf (8.6.9+dfsg-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up icu-devtools (63.2-2) ...
Setting up pkg-config (0.29-6) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpcre2-8-0:armhf (10.32-5) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libgfortran5:armhf (9.1.0-10+rpi1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up libubsan1:armhf (9.1.0-10+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libtiff5:armhf (4.0.10+git190818-1) ...
Setting up cpp-8 (8.3.0-19+rpi1) ...
Setting up openssl (1.1.1c-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (63.2-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up xdg-utils (1.1.3-1) ...
Setting up libcc1-0:armhf (9.1.0-10+rpi1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.6-9.2) ...
Setting up libfile-stripnondeterminism-perl (1.5.0-1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libncurses-dev:armhf (6.1+20190803-1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libtool (2.4.6-9) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up libpng-dev:armhf (1.6.37-1) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libreadline-dev:armhf (8.0-2) ...
Setting up libthai0:armhf (0.1.28-2) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpcre2-posix0:armhf (10.32-5) ...
Setting up libfreetype6:armhf (2.9.1-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libgcc-8-dev:armhf (8.3.0-19+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libncurses5-dev:armhf (6.1+20190803-1) ...
Setting up libcurl4:armhf (7.65.3-1) ...
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libharfbuzz0b:armhf (2.6.0-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libstdc++-8-dev:armhf (8.3.0-19+rpi1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libboost1.67-dev:armhf (1.67.0-13) ...
Setting up libgfortran-8-dev:armhf (8.3.0-19+rpi1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up gcc-8 (8.3.0-19+rpi1) ...
Setting up libpcre2-dev:armhf (10.32-5) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up gfortran-8 (8.3.0-19+rpi1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.8.6.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:8.3.0-1+rpi2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up g++-8 (8.3.0-19+rpi1) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libboost-dev:armhf (1.67.0.2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up r-cran-bh (1.66.0-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.9-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-7) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7) ...
Setting up r-base-core (3.6.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.30.0-3) ...
Setting up r-base-dev (3.6.1-4) ...
Setting up r-bioc-graph (1.62.0-1) ...
Setting up dh-strip-nondeterminism (1.5.0-1) ...
Setting up debhelper (12.5.3) ...
Setting up dh-autoreconf (19) ...
Setting up dh-r (20190807) ...
Setting up sbuild-build-depends-r-bioc-rbgl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-19+rpi1 gcc-8_8.3.0-19+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-19+rpi1 libstdc++6_9.1.0-10+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-19+rpi1 dash_0.5.10.2-5 dctrl-tools_2.24-3 debconf_1.5.71 debhelper_12.5.3 debianutils_4.8.6.1 dh-autoreconf_19 dh-r_20190807 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.37-5 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-19+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-19+rpi1 gcc-8-base_8.3.0-19+rpi1 gcc-9-base_9.1.0-10+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.3.0-1+rpi2 gfortran-8_8.3.0-19+rpi1 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 icu-devtools_63.2-2 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10+rpi1 libassuan0_2.5.2-1 libatomic1_9.1.0-10+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.2 libboost1.67-dev_1.67.0-13 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libbz2-dev_1.0.6-9.2 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.13-1 libcurl4_7.65.3-1 libdatrie1_0.2.12-2 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-4 libfribidi0_1.0.5-3.1 libgcc-8-dev_8.3.0-19+rpi1 libgcc1_1:9.1.0-10+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran-8-dev_8.3.0-19+rpi1 libgfortran5_9.1.0-10+rpi1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_9.1.0-10+rpi1 libgpg-error0_1.35-1 libgraphite2-3_1.3.13-8 libgssapi-krb5-2_1.17-6+b1 libharfbuzz0b_2.6.0-1 libhogweed4_3.4.1-1 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20190803-1 libncurses5-dev_6.1+20190803-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-7 libpangocairo-1.0-0_1.42.4-7 libpangoft2-1.0-0_1.42.4-7 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libpsl5_0.20.2-2 libreadline-dev_8.0-2 libreadline7_7.0-5 libreadline8_8.0-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-19+rpi1 libstdc++6_9.1.0-10+rpi1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_241-5+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-2 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.28-2 libthai0_0.1.28-2 libtiff5_4.0.10+git190818-1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtk8.6_8.6.9-2 libtool_2.4.6-9 libubsan1_9.1.0-10+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b2 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 openssl_1.1.1c-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkg-config_0.29-6 po-debconf_1.0.21 r-base-core_3.6.1-4 r-base-dev_3.6.1-4 r-bioc-biocgenerics_0.30.0-3 r-bioc-graph_1.62.0-1 r-cran-bh_1.66.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rbgl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.33.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jul 3 11:30:08 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rbgl_1.60.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rbgl in /<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg
dpkg-source: info: unpacking r-bioc-rbgl_1.60.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rbgl_1.60.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying boost-1.61.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c22743a5-d81d-4afb-8e9e-fed374056f9e
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c34882
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rbgl
dpkg-buildpackage: info: source version 1.60.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit
I: R Package: RBGL Version: 1.60.0
I: Building using R version 3.6.1-4
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Wed, 03 Jul 2019 13:25:11 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-rbgl-1.60.0\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rbgl-1.60.0\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 03 Jul 2019 13:25:11 +0200'"
* installing *source* package 'RBGL' ...
** using staged installation
checking R package BH ... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bbc.cpp -o bbc.o
bbc.cpp: In function 'EdgeIterator max_element(EdgeIterator, EdgeIterator, EdgeCentralityCompare)':
bbc.cpp:25:1: note: parameter passing for argument of type 'EdgeCentralityCompare' {aka 'boost::indirect_cmp<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>, std::less<double> >'} changed in GCC 7.1
max_element(EdgeIterator __first, EdgeIterator __last, EdgeCentralityCompare __comp)
^~~~~~~~~~~
In file included from /usr/include/boost/graph/bc_clustering.hpp:12,
from bbc.cpp:37:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_unweighted_shortest_paths]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:452:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
In file included from bbc.cpp:37:
/usr/include/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap) [with MutableGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; Done = clustering_threshold; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/bc_clustering.hpp:109:1: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(MutableGraph& g, Done done,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bc_clustering.hpp: In function 'SEXPREC* BGL_betweenness_centrality_clustering(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/bc_clustering.hpp:144:36: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(g, done, edge_centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
get(vertex_index, g));
~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/graph/bc_clustering.hpp:12,
from bbc.cpp:37:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, WeightMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'SEXPREC* BGL_brandes_betweenness_centrality(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(g, centrality, edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
weight_map, vertex_index);
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cliques.cpp -o cliques.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clusteringCoef.cpp -o clusteringCoef.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dominatorTree.cpp -o dominatorTree.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /usr/include/c++/8/vector:69,
from RBGL.hpp:12,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode}; _Tp = detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode; _Alloc = std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> >::iterator' {aka '__gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void detail::OptimumBranching<TOptimumIsMaximum, TAttemptToSpan, TGraphIsDense, TEdgeListGraph, TVertexIndexMap, TWeightMap, TInputIterator, TOutputIterator>::operator()() [with bool TOptimumIsMaximum = true; bool TAttemptToSpan = false; bool TGraphIsDense = false; TEdgeListGraph = R_adjacency_list<boost::directedS, double>; TVertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; TWeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; TInputIterator = unsigned int*; TOutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hcs.cpp -o hcs.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c incrConnComp.cpp -o incrConnComp.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interfaces.cpp -o interfaces.o
In file included from interfaces.cpp:8:
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::pair<unsigned int, OutputIterator> boost::detail::biconnected_components_impl(const Graph&, ComponentMap, OutputIterator, VertexIndexMap, DiscoverTimeMap, LowPointMap, PredecessorMap, DFSVisitor) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; OutputIterator = boost::graph_detail::dummy_output_iterator; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; DiscoverTimeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; LowPointMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; PredecessorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; DFSVisitor = boost::dfs_visitor<>]':
/usr/include/boost/graph/biconnected_components.hpp:162:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components_impl(const Graph & g, ComponentMap comp,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::size_t boost::biconnected_components(const Graph&, ComponentMap) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/biconnected_components.hpp:391:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components(const Graph& g, ComponentMap comp)
^~~~~~~~~~~~~~~~~~~~~~
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:264:47: note: parameter passing for argument of type 'boost::detail::adj_list_any_edge_pmap::bind_<R_adjacency_list<boost::undirectedS, double>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>::type' {aka 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>'} changed in GCC 7.1
int num_comps = biconnected_components(g, component);
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minST.cpp -o minST.o
In file included from minST.cpp:2:
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
kruskal_mst_impl(const Graph& G,
^~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mincut.cpp -o mincut.o
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In constructor 'boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::push_relabel(Graph&, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>; FlowValue = double]':
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
push_relabel(Graph& g_,
^~~~~~~~~~~~
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
/usr/include/boost/graph/push_relabel_max_flow.hpp:700:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
algo(g, cap, res, rev, src, sink, index_map);
^~~~
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
return edmonds_karp_max_flow
~~~~~~~~~~~~~~~~~~~~~
(g, src, sink,
^~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_pmap(get_param(params, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(color_vec.begin(), choose_const_pmap
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(get_param(params, vertex_index),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, vertex_index), color_vec[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pred);
~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ordering.cpp -o ordering.o
In file included from /usr/include/c++/8/list:64,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:41,
from ordering.cpp:1:
/usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::merge(std::__cxx11::list<_Tp, _Alloc>&&, _StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/8/bits/list.tcc:420:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::sort(_StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/8/bits/list.tcc:553:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/list:63,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:41,
from ordering.cpp:1:
/usr/include/c++/8/bits/stl_list.h:1777:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
^~~~~
/usr/include/c++/8/bits/stl_list.h:1777:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
^~~~~
In file included from ordering.cpp:8:
/usr/include/boost/graph/sloan_ordering.hpp: In function 'OutputIterator boost::sloan_ordering(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, OutputIterator, ColorMap, DegreeMap, PriorityMap, Weight, Weight) [with Graph = boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >; OutputIterator = __gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >; ColorMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, boost::default_color_type, boost::default_color_type&, boost::vertex_color_t>; DegreeMap = boost::degree_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > > >; PriorityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>; Weight = int]':
/usr/include/boost/graph/sloan_ordering.hpp:257:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
sloan_ordering(Graph& g,
^~~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp:318:7: note: parameter passing for argument of type 'Compare' {aka 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >'} changed in GCC 7.1
priority_list.sort(comp); //Orders the elements in the priority list in an ascending manner
^~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/sloan_ordering.hpp:427:26: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
return sloan_ordering(G, s, e, permutation, color, degree, priority, W1, W2);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c planar.cpp -o planar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registerSigHandlers.cpp -o registerSigHandlers.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shortestPath.cpp -o shortestPath.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from shortestPath.cpp:4:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* BGL_johnson_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
return johnson_all_pairs_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g, D, id, w,
^~~~~~~~~~~~~
choose_param(get_param(params, distance_compare_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::less<WT>()),
~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_combine_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed_plus<WT>()),
~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_inf_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_zero_t()), WT()) );
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sna.cpp -o sna.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from sna.cpp:4:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
return edmonds_karp_max_flow
~~~~~~~~~~~~~~~~~~~~~
(g, src, sink,
^~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_pmap(get_param(params, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(color_vec.begin(), choose_const_pmap
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(get_param(params, vertex_index),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, vertex_index), color_vec[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pred);
~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from sna.cpp:3:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* kCliques(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
return johnson_all_pairs_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g, D, id, w,
^~~~~~~~~~~~~
choose_param(get_param(params, distance_compare_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::less<WT>()),
~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_combine_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed_plus<WT>()),
~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_inf_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_zero_t()), WT()) );
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transitive_closure.cpp -o transitive_closure.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/BH/include -I"/usr/lib/R/site-library/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-IRhjso/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wavefront.cpp -o wavefront.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library/00LOCK-r-bioc-rbgl-1.60.0+dfsg/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)
I: Using r-bioc-graph for Depends:graph
I: Using r-cran-runit for Recommends:runit
W: Cannot find a debian package for Suggests:Rgraphviz
I: Using r-cran-xml for Suggests:XML
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
I: BioConductor API version: r-api-bioc-3.9
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg'
dh_fixperms
find debian -name "*.dot" -exec chmod -x \{\} \;
find debian -name simpleExample.gxl -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rbgl' in '../r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rbgl-dbgsym' in '../r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../r-bioc-rbgl_1.60.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-08-22T11:26:45Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rbgl_1.60.0+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Wed, 03 Jul 2019 13:25:11 +0200
Source: r-bioc-rbgl
Binary: r-bioc-rbgl r-bioc-rbgl-dbgsym
Architecture: armhf
Version: 1.60.0+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-rbgl - R interface to the graph algorithms contained in the BOOST librar
Changes:
r-bioc-rbgl (1.60.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* Remove trailing whitespace in debian/copyright
Checksums-Sha1:
334f94dcb8cecb02f1836ad012243a6770e4842b 6050972 r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
649fbb54435db634e0d823baf460da5a0f7d4599 7824 r-bioc-rbgl_1.60.0+dfsg-1_armhf.buildinfo
c0a3d715479bb1b3402829e60756a39d854b355b 754880 r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
Checksums-Sha256:
1d4c63d6e716ce2c1363960741e50d06b9cc33ae42cfe1f31ee3d9be8899440e 6050972 r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
31327b7f176d58f52bfb73dc8703b1479b90d4356e56a6b2c9ddcfd6acd17a54 7824 r-bioc-rbgl_1.60.0+dfsg-1_armhf.buildinfo
1ca55606bed7f8582743fd6b3fde23589190deac3afc1e511d2eea695c748eb5 754880 r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
Files:
579235989b58574f53f13797b31278bd 6050972 debug optional r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
7314a75acb3ab45b5e93a8541c05f518 7824 gnu-r optional r-bioc-rbgl_1.60.0+dfsg-1_armhf.buildinfo
59d4064919754011060c1d856b9b1f54 754880 gnu-r optional r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-rbgl
Binary: r-bioc-rbgl
Architecture: armhf
Version: 1.60.0+dfsg-1
Checksums-Md5:
579235989b58574f53f13797b31278bd 6050972 r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
59d4064919754011060c1d856b9b1f54 754880 r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
Checksums-Sha1:
334f94dcb8cecb02f1836ad012243a6770e4842b 6050972 r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
c0a3d715479bb1b3402829e60756a39d854b355b 754880 r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
Checksums-Sha256:
1d4c63d6e716ce2c1363960741e50d06b9cc33ae42cfe1f31ee3d9be8899440e 6050972 r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
1ca55606bed7f8582743fd6b3fde23589190deac3afc1e511d2eea695c748eb5 754880 r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Thu, 22 Aug 2019 11:26:42 +0000
Build-Path: /<<BUILDDIR>>/r-bioc-rbgl-1.60.0+dfsg
Installed-Build-Depends:
autoconf (= 2.69-11),
automake (= 1:1.16.1-4),
autopoint (= 0.19.8.1-9),
autotools-dev (= 20180224.1),
base-files (= 10.3+rpi1),
base-passwd (= 3.5.46),
bash (= 5.0-4),
binutils (= 2.31.1-16+rpi1),
binutils-arm-linux-gnueabihf (= 2.31.1-16+rpi1),
binutils-common (= 2.31.1-16+rpi1),
bsdmainutils (= 11.1.2),
bsdutils (= 1:2.33.1-0.1),
build-essential (= 12.6),
bzip2 (= 1.0.6-9.2),
ca-certificates (= 20190110),
coreutils (= 8.30-3),
cpp (= 4:8.3.0-1+rpi2),
cpp-8 (= 8.3.0-19+rpi1),
dash (= 0.5.10.2-5),
dctrl-tools (= 2.24-3),
debconf (= 1.5.71),
debhelper (= 12.5.3),
debianutils (= 4.8.6.1),
dh-autoreconf (= 19),
dh-r (= 20190807),
dh-strip-nondeterminism (= 1.5.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-1),
fdisk (= 2.33.1-0.1),
file (= 1:5.37-5),
findutils (= 4.6.0+git+20190209-2),
fontconfig (= 2.13.1-2),
fontconfig-config (= 2.13.1-2),
fonts-dejavu-core (= 2.37-1),
g++ (= 4:8.3.0-1+rpi2),
g++-8 (= 8.3.0-19+rpi1),
gcc (= 4:8.3.0-1+rpi2),
gcc-8 (= 8.3.0-19+rpi1),
gcc-8-base (= 8.3.0-19+rpi1),
gcc-9-base (= 9.1.0-10+rpi1),
gettext (= 0.19.8.1-9),
gettext-base (= 0.19.8.1-9),
gfortran (= 4:8.3.0-1+rpi2),
gfortran-8 (= 8.3.0-19+rpi1),
grep (= 3.3-1),
groff-base (= 1.22.4-3),
gzip (= 1.9-3),
hostname (= 3.21),
icu-devtools (= 63.2-2),
init-system-helpers (= 1.56+nmu1),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-4),
libarchive-zip-perl (= 1.64-1),
libasan5 (= 9.1.0-10+rpi1),
libatomic1 (= 9.1.0-10+rpi1),
libattr1 (= 1:2.4.48-4),
libaudit-common (= 1:2.8.4-3),
libaudit1 (= 1:2.8.4-3),
libbinutils (= 2.31.1-16+rpi1),
libblas-dev (= 3.8.0-2),
libblas3 (= 3.8.0-2),
libblkid1 (= 2.33.1-0.1),
libboost-dev (= 1.67.0.2),
libboost1.67-dev (= 1.67.0-13),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.6-9.2),
libbz2-dev (= 1.0.6-9.2),
libc-bin (= 2.28-10+rpi1),
libc-dev-bin (= 2.28-10+rpi1),
libc6 (= 2.28-10+rpi1),
libc6-dev (= 2.28-10+rpi1),
libcairo2 (= 1.16.0-4),
libcap-ng0 (= 0.7.9-2),
libcc1-0 (= 9.1.0-10+rpi1),
libcom-err2 (= 1.44.5-1),
libcroco3 (= 0.6.13-1),
libcurl4 (= 7.65.3-1),
libdatrie1 (= 0.2.12-2),
libdb5.3 (= 5.3.28+dfsg1-0.5),
libdebconfclient0 (= 0.249),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libexpat1 (= 2.2.7-1),
libfdisk1 (= 2.33.1-0.1),
libffi6 (= 3.2.1-9),
libfile-stripnondeterminism-perl (= 1.5.0-1),
libfile-which-perl (= 1.23-1),
libfontconfig1 (= 2.13.1-2),
libfreetype6 (= 2.9.1-4),
libfribidi0 (= 1.0.5-3.1),
libgcc-8-dev (= 8.3.0-19+rpi1),
libgcc1 (= 1:9.1.0-10+rpi1),
libgcrypt20 (= 1.8.4-5),
libgdbm-compat4 (= 1.18.1-4),
libgdbm6 (= 1.18.1-4),
libgfortran-8-dev (= 8.3.0-19+rpi1),
libgfortran5 (= 9.1.0-10+rpi1),
libglib2.0-0 (= 2.60.6-2),
libgmp10 (= 2:6.1.2+dfsg-4),
libgnutls30 (= 3.6.7-4),
libgomp1 (= 9.1.0-10+rpi1),
libgpg-error0 (= 1.35-1),
libgraphite2-3 (= 1.3.13-8),
libgssapi-krb5-2 (= 1.17-6+b1),
libharfbuzz0b (= 2.6.0-1),
libhogweed4 (= 3.4.1-1),
libice6 (= 2:1.0.9-2),
libicu-dev (= 63.2-2),
libicu63 (= 63.2-2),
libidn2-0 (= 2.0.5-1),
libisl19 (= 0.20-2),
libjbig0 (= 2.1-3.1+b2),
libjpeg-dev (= 1:1.5.2-2),
libjpeg62-turbo (= 1:1.5.2-2+b1),
libjpeg62-turbo-dev (= 1:1.5.2-2+b1),
libk5crypto3 (= 1.17-6+b1),
libkeyutils1 (= 1.6-6),
libkrb5-3 (= 1.17-6+b1),
libkrb5support0 (= 1.17-6+b1),
liblapack-dev (= 3.8.0-2),
liblapack3 (= 3.8.0-2),
libldap-2.4-2 (= 2.4.47+dfsg-3+rpi1),
libldap-common (= 2.4.47+dfsg-3+rpi1),
liblz4-1 (= 1.8.3-1),
liblzma-dev (= 5.2.4-1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.37-5),
libmagic1 (= 1:5.37-5),
libmount1 (= 2.33.1-0.1),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncurses-dev (= 6.1+20190803-1),
libncurses5-dev (= 6.1+20190803-1),
libncurses6 (= 6.1+20190803-1),
libncursesw6 (= 6.1+20190803-1),
libnettle6 (= 3.4.1-1),
libnghttp2-14 (= 1.39.2-1),
libp11-kit0 (= 0.23.15-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpango-1.0-0 (= 1.42.4-7),
libpangocairo-1.0-0 (= 1.42.4-7),
libpangoft2-1.0-0 (= 1.42.4-7),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libpcre16-3 (= 2:8.39-12),
libpcre2-16-0 (= 10.32-5),
libpcre2-32-0 (= 10.32-5),
libpcre2-8-0 (= 10.32-5),
libpcre2-dev (= 10.32-5),
libpcre2-posix0 (= 10.32-5),
libpcre3 (= 2:8.39-12),
libpcre3-dev (= 2:8.39-12),
libpcre32-3 (= 2:8.39-12),
libpcrecpp0v5 (= 2:8.39-12),
libperl5.28 (= 5.28.1-6),
libpipeline1 (= 1.5.1-2),
libpixman-1-0 (= 0.36.0-1),
libpng-dev (= 1.6.37-1),
libpng16-16 (= 1.6.37-1),
libpsl5 (= 0.20.2-2),
libreadline-dev (= 8.0-2),
libreadline8 (= 8.0-2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2),
libsasl2-2 (= 2.1.27+dfsg-1+b1),
libsasl2-modules-db (= 2.1.27+dfsg-1+b1),
libseccomp2 (= 2.3.3-4),
libselinux1 (= 2.8-1+b1),
libsigsegv2 (= 2.12-2),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.33.1-0.1),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1c-1),
libstdc++-8-dev (= 8.3.0-19+rpi1),
libstdc++6 (= 9.1.0-10+rpi1),
libsub-override-perl (= 0.09-2),
libswitch-perl (= 2.17-2),
libsystemd0 (= 241-5+rpi1),
libtasn1-6 (= 4.13-3),
libtcl8.6 (= 8.6.9+dfsg-2),
libthai-data (= 0.1.28-2),
libthai0 (= 0.1.28-2),
libtiff5 (= 4.0.10+git190818-1),
libtinfo5 (= 6.1+20190803-1),
libtinfo6 (= 6.1+20190803-1),
libtk8.6 (= 8.6.9-2),
libtool (= 2.4.6-9),
libubsan1 (= 9.1.0-10+rpi1),
libuchardet0 (= 0.0.6-3),
libudev1 (= 241-5+rpi1),
libunistring2 (= 0.9.10-1),
libuuid1 (= 2.33.1-0.1),
libwebp6 (= 0.6.1-2),
libx11-6 (= 2:1.6.7-1),
libx11-data (= 2:1.6.7-1),
libxau6 (= 1:1.0.8-1+b2),
libxcb-render0 (= 1.13.1-2),
libxcb-shm0 (= 1.13.1-2),
libxcb1 (= 1.13.1-2),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.3-1+b2),
libxft2 (= 2.3.2-2),
libxml2 (= 2.9.4+dfsg1-7+b2),
libxmuu1 (= 2:1.1.2-2),
libxrender1 (= 1:0.9.10-1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.1.5-1),
libzstd1 (= 1.3.8+dfsg-3+rpi1),
linux-libc-dev (= 4.18.20-2+rpi1),
login (= 1:4.5-1.1),
lsb-base (= 10.2019051400+rpi1),
m4 (= 1.4.18-2),
make (= 4.2.1-1.2),
man-db (= 2.8.6.1-1),
mawk (= 1.3.3-17),
ncurses-base (= 6.1+20181013-2),
ncurses-bin (= 6.1+20181013-2),
openssl (= 1.1.1c-1),
patch (= 2.7.6-3),
perl (= 5.28.1-6),
perl-base (= 5.28.1-6),
perl-modules-5.28 (= 5.28.1-6),
pkg-config (= 0.29-6),
po-debconf (= 1.0.21),
r-base-core (= 3.6.1-4),
r-base-dev (= 3.6.1-4),
r-bioc-biocgenerics (= 0.30.0-3),
r-bioc-graph (= 1.62.0-1),
r-cran-bh (= 1.66.0-1),
readline-common (= 7.0-5),
sed (= 4.7-1),
sensible-utils (= 0.0.12),
sysvinit-utils (= 2.93-8),
tar (= 1.30+dfsg-6),
tzdata (= 2019a-1),
ucf (= 3.0038+nmu1),
unzip (= 6.0-25),
util-linux (= 2.33.1-0.1),
x11-common (= 1:7.7+19),
xauth (= 1:1.0.10-1),
xdg-utils (= 1.1.3-1),
xz-utils (= 5.2.4-1),
zip (= 3.0-11),
zlib1g (= 1:1.2.11.dfsg-1),
zlib1g-dev (= 1:1.2.11.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1562153111"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rbgl-dbgsym_1.60.0+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 6050972 bytes: control archive=544 bytes.
393 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rbgl-dbgsym
Source: r-bioc-rbgl
Version: 1.60.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6139
Depends: r-bioc-rbgl (= 1.60.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rbgl
Build-Ids: 655674deb7b0cd449b7e0e6e31d259b498a71507
drwxr-xr-x root/root 0 2019-07-03 11:25 ./
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root 6275204 2019-07-03 11:25 ./usr/lib/debug/.build-id/65/5674deb7b0cd449b7e0e6e31d259b498a71507.debug
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-07-03 11:25 ./usr/share/doc/r-bioc-rbgl-dbgsym -> r-bioc-rbgl
r-bioc-rbgl_1.60.0+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 754880 bytes: control archive=2744 bytes.
691 bytes, 15 lines control
5872 bytes, 75 lines md5sums
Package: r-bioc-rbgl
Version: 1.60.0+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1543
Depends: r-base-core (>= 3.6.1-4), r-api-3.5, r-api-bioc-3.9, r-bioc-graph, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Recommends: r-cran-runit
Suggests: r-cran-xml, r-bioc-biocgenerics
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/RBGL/
Description: R interface to the graph algorithms contained in the BOOST library
RBGL is part of the BioConductor GNU R suite. It is a fairly extensive and
comprehensive interface to the graph algorithms contained in the BOOST C++
libraries.
drwxr-xr-x root/root 0 2019-07-03 11:25 ./
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/
-rw-r--r-- root/root 898 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/DESCRIPTION
-rw-r--r-- root/root 4670 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/INDEX
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/
-rw-r--r-- root/root 2617 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/Rd.rds
-rw-r--r-- root/root 177 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/data.rds
-rw-r--r-- root/root 132 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/features.rds
-rw-r--r-- root/root 2471 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/hsearch.rds
-rw-r--r-- root/root 1475 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/links.rds
-rw-r--r-- root/root 1055 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/nsInfo.rds
-rw-r--r-- root/root 967 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/package.rds
-rw-r--r-- root/root 210 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/Meta/vignette.rds
-rw-r--r-- root/root 1763 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/NAMESPACE
-rw-r--r-- root/root 645 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/NEWS
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/R/
-rw-r--r-- root/root 1056 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/R/RBGL
-rw-r--r-- root/root 113926 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/R/RBGL.rdb
-rw-r--r-- root/root 1720 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/R/RBGL.rdx
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/
-rw-r--r-- root/root 1295 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/FileDep.gxl
-rw-r--r-- root/root 536 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/bfsex.gxl
-rw-r--r-- root/root 1283 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/biconn.gxl
-rw-r--r-- root/root 125 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/conn.dot
-rw-r--r-- root/root 1234 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/conn.gxl
-rw-r--r-- root/root 1335 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/conn2.gxl
-rw-r--r-- root/root 1407 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/conn2iso.gxl
-rw-r--r-- root/root 604 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/demo.gxl
-rw-r--r-- root/root 433 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/dfsex.gxl
-rw-r--r-- root/root 999 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/dijkex.gxl
-rw-r--r-- root/root 822 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/dominator.gxl
-rw-r--r-- root/root 1853 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/hcs.gxl
-rw-r--r-- root/root 904 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/kmstEx.gxl
-rw-r--r-- root/root 6536 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/ospf.gxl
-rw-r--r-- root/root 1495 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/simpleExample.gxl
-rw-r--r-- root/root 734 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/snacliqueex.gxl
-rw-r--r-- root/root 2533 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/snacoreex.gxl
-rw-r--r-- root/root 1094 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/snalambdaex.gxl
-rw-r--r-- root/root 5146 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/telenet.gxl
-rw-r--r-- root/root 290 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/XML/wag.gxl
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/
-rw-r--r-- root/root 3640 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/bfs-example.cpp
-rw-r--r-- root/root 2559 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/connected_components.cpp
-rw-r--r-- root/root 2826 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/cycdet.cpp
-rw-r--r-- root/root 4087 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/dfs-example.cpp
-rw-r--r-- root/root 7482 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/file_dependencies.cpp
-rw-r--r-- root/root 3377 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/kruskal-example.cpp
-rw-r--r-- root/root 5990 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/boostExamples/quick_tour.cpp
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/data/
-rw-r--r-- root/root 446 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/data/FileDep.rda
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/demos/
-rw-r--r-- root/root 410 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/demos/dem1.R
-rw-r--r-- root/root 1536 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/demos/dem1.out
-rw-r--r-- root/root 4406 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/demos/vcshort.R
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/doc/
-rw-r--r-- root/root 14543 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/doc/RBGL.R
-rw-r--r-- root/root 38522 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/doc/RBGL.Rnw
-rw-r--r-- root/root 320576 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/doc/RBGL.pdf
-rw-r--r-- root/root 1290 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/doc/index.html
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/
-rw-r--r-- root/root 1968 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/cc-internet.dot
-rw-r--r-- root/root 386 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/dfs-example.dot
-rw-r--r-- root/root 222 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/edge-connectivity.dot
-rw-r--r-- root/root 221 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/joh.dot
-rw-r--r-- root/root 1285 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/joh.gxl
-rw-r--r-- root/root 1851 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/lkedge.Rnw
-rw-r--r-- root/root 67194 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/lkedge.pdf
-rw-r--r-- root/root 1361 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/ospf-graph.dot
-rw-r--r-- root/root 6704 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/ospf.gxl
-rw-r--r-- root/root 905 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/scc.dot
-rw-r--r-- root/root 1322 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/dot/telephone-network.dot
-rw-r--r-- root/root 11159 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/fdep.ps
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/
-rw-r--r-- root/root 2801 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/AnIndex
-rw-r--r-- root/root 135849 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/RBGL.rdb
-rw-r--r-- root/root 1622 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/RBGL.rdx
-rw-r--r-- root/root 1215 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/aliases.rds
-rw-r--r-- root/root 799 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/help/paths.rds
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/html/
-rw-r--r-- root/root 12528 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/html/00Index.html
-rw-r--r-- root/root 1335 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/html/R.css
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/libs/
-rw-r--r-- root/root 671484 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/libs/RBGL.so
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/old_boost/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/unitTests/
-rw-r--r-- root/root 1127 2019-07-03 11:25 ./usr/lib/R/site-library/RBGL/unitTests/test_segfault.R
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/doc/r-bioc-rbgl/
-rw-r--r-- root/root 323 2019-07-03 11:25 ./usr/share/doc/r-bioc-rbgl/README.test
-rw-r--r-- root/root 778 2019-07-03 11:25 ./usr/share/doc/r-bioc-rbgl/changelog.Debian.gz
-rw-r--r-- root/root 12389 2019-07-03 11:25 ./usr/share/doc/r-bioc-rbgl/copyright
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-07-03 11:25 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 67 2019-07-03 11:25 ./usr/share/lintian/overrides/r-bioc-rbgl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 16300
Build-Time: 671
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 773
Job: r-bioc-rbgl_1.60.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rbgl
Package-Time: 1506
Source-Version: 1.60.0+dfsg-1
Space: 16300
Status: successful
Version: 1.60.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2019-08-22T11:26:45Z
Build needed 00:25:06, 16300k disk space