r-bioc-rbgl →
1.58.1+dfsg-1 →
armhf → 2018-11-26 05:02:25
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-rbgl 1.58.1+dfsg-1 (armhf) Mon, 26 Nov 2018 04:45:48 +0000 |
+==============================================================================+
Package: r-bioc-rbgl
Version: 1.58.1+dfsg-1
Source Version: 1.58.1+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-9e17fcca-048d-4a5b-8683-1ca3d2268bbf' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 8s (2900 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rbgl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rbgl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 384 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.58.1+dfsg-1 (dsc) [2126 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.58.1+dfsg-1 (tar) [375 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.58.1+dfsg-1 (diff) [6744 B]
Fetched 384 kB in 0s (5220 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-NXs9NU/r-bioc-rbgl-1.58.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-NXs9NU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-KFop4p/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-KFop4p/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-KFop4p/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (11.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15786 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-graph, libboost-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-graph, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rbgl-dummy' in '/<<BUILDDIR>>/resolver-KFop4p/apt_archive/sbuild-build-depends-r-bioc-rbgl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rbgl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Sources [520 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ Packages [601 B]
Fetched 2454 B in 0s (13.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rbgl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8
gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost1.67-dev
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-graph ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
libgraphite2-utils icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-sparsem r-bioc-rbgl r-cran-cluster
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-xml
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8
gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost1.67-dev
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-graph sbuild-build-depends-r-bioc-rbgl-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 140 newly installed, 0 to remove and 19 not upgraded.
Need to get 91.0 MB/94.7 MB of archives.
After this operation, 392 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KFop4p/apt_archive ./ sbuild-build-depends-r-bioc-rbgl-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-4 [7974 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-4 [166 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.1.1-1+rpi1 [1013 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-4 [61.9 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-4 [51.5 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-2 [236 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-2 [23.6 MB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:82 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:86 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git180724-3 [12.9 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libiculx63 armhf 63.1-4 [26.3 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-4 [166 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 2.1.1-1+rpi1 [742 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 2.1.1-1+rpi1 [749 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.1.1-1+rpi1 [757 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 2.1.1-1+rpi1 [1099 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git180724-3 [28.5 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-4 [8865 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-2 [4484 B]
Get:115 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-10 [8387 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.67.0.1 [3860 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-bioc-graph armhf 1.60.0-1 [1619 kB]
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No schema files found: removed existing output file.
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Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up xdg-utils (1.1.3-1) ...
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Setting up libx11-data (2:1.6.7-1) ...
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Setting up libwebp6:armhf (0.6.1-2) ...
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Setting up libfile-stripnondeterminism-perl (0.45.0-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
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Setting up fontconfig-config (2.13.1-2) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.7-1) ...
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Setting up libcurl4:armhf (7.61.0-1) ...
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Setting up libtiff5:armhf (4.0.10-2) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.4-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libxcb1:armhf (1.13.1-1) ...
Setting up libharfbuzz-gobject0:armhf (2.1.1-1+rpi1) ...
Setting up libtool (2.4.6-6) ...
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Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-1) ...
Setting up libharfbuzz-icu0:armhf (2.1.1-1+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.6.7-1) ...
Setting up libblas-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran-8 (8.2.0-9+rpi1) ...
Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libicu-le-hb0:armhf (1.0.3+git180724-3) ...
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gir1.2-harfbuzz-0.0:armhf (2.1.1-1+rpi1) ...
Setting up libxcb-shm0:armhf (1.13.1-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libiculx63:armhf (63.1-4) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.58.1-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libglib2.0-dev:armhf (2.58.1-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-4) ...
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-4) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-4) ...
Setting up r-base-core (3.5.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.28.0-2) ...
Setting up r-bioc-graph (1.60.0-1) ...
Setting up libharfbuzz-dev:armhf (2.1.1-1+rpi1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git180724-3) ...
Setting up libicu-dev (63.1-4) ...
Setting up r-base-dev (3.5.1-2) ...
Setting up debhelper (11.5.3) ...
Setting up dh-r (20181101) ...
Setting up sbuild-build-depends-r-bioc-rbgl-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Processing triggers for libc-bin (2.27-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-8+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.10-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-9+rpi1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_2.1.1-1+rpi1 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_63.1-4 inetutils-ping_2:1.9.4-5 init-system-helpers_1.55 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 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libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18.1-1 libgdbm3_1.8.3-14 libgdbm6_1.18.1-1 libgfortran-8-dev_8.2.0-9+rpi1 libgfortran5_8.2.0-9+rpi1 libgirepository-1.0-1_1.58.0-1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16.1-1 libharfbuzz-dev_2.1.1-1+rpi1 libharfbuzz-gobject0_2.1.1-1+rpi1 libharfbuzz-icu0_2.1.1-1+rpi1 libharfbuzz0b_2.1.1-1+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_63.1-4 libicu-le-hb-dev_1.0.3+git180724-3 libicu-le-hb0_1.0.3+git180724-3 libicu63_63.1-4 libiculx63_63.1-4 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.1-2 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libnss-systemd_239-11+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-11+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-4 libpangocairo-1.0-0_1.42.4-4 libpangoft2-1.0-0_1.42.4-4 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.4-1 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libswitch-perl_2.17-2 libsystemd0_239-11+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-2 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-11+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.10-2+rpi1+b1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-8+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-2 r-base-dev_3.5.1-2 r-bioc-biocgenerics_0.28.0-2 r-bioc-graph_1.60.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rbgl-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-11+rpi1 systemd-sysv_239-11+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-11+rpi1 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 24 13:33:39 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rbgl_1.58.1+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rbgl in /<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg
dpkg-source: info: unpacking r-bioc-rbgl_1.58.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rbgl_1.58.1+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying boost-1.61.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-9e17fcca-048d-4a5b-8683-1ca3d2268bbf
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rbgl
dpkg-buildpackage: info: source version 1.58.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit
I: R Package: RBGL Version: 1.58.1
I: Building using R version 3.5.1-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sat, 24 Nov 2018 14:26:33 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-rbgl-1.58.1\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rbgl-1.58.1\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 24 Nov 2018 14:26:33 +0100'"
* installing *source* package 'RBGL' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg/src'
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bbc.cpp -o bbc.o
In file included from bbc.cpp:2:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_unweighted_shortest_paths]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:452:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
In file included from bbc.cpp:3:
/usr/include/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap) [with MutableGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; Done = clustering_threshold; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/bc_clustering.hpp:109:1: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(MutableGraph& g, Done done,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bc_clustering.hpp: In function 'SEXPREC* BGL_betweenness_centrality_clustering(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/bc_clustering.hpp:144:36: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(g, done, edge_centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
get(vertex_index, g));
~~~~~~~~~~~~~~~~~~~~~
In file included from bbc.cpp:2:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, WeightMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'SEXPREC* BGL_brandes_betweenness_centrality(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(g, centrality, edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
weight_map, vertex_index);
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cliques.cpp -o cliques.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clusteringCoef.cpp -o clusteringCoef.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dominatorTree.cpp -o dominatorTree.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /usr/include/c++/8/vector:69,
from RBGL.hpp:12,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode}; _Tp = detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode; _Alloc = std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> >::iterator' {aka '__gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void detail::OptimumBranching<TOptimumIsMaximum, TAttemptToSpan, TGraphIsDense, TEdgeListGraph, TVertexIndexMap, TWeightMap, TInputIterator, TOutputIterator>::operator()() [with bool TOptimumIsMaximum = true; bool TAttemptToSpan = false; bool TGraphIsDense = false; TEdgeListGraph = R_adjacency_list<boost::directedS, double>; TVertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; TWeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; TInputIterator = unsigned int*; TOutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hcs.cpp -o hcs.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c incrConnComp.cpp -o incrConnComp.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interfaces.cpp -o interfaces.o
In file included from interfaces.cpp:8:
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::pair<unsigned int, OutputIterator> boost::detail::biconnected_components_impl(const Graph&, ComponentMap, OutputIterator, VertexIndexMap, DiscoverTimeMap, LowPointMap, PredecessorMap, DFSVisitor) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; OutputIterator = boost::graph_detail::dummy_output_iterator; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; DiscoverTimeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; LowPointMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; PredecessorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; DFSVisitor = boost::dfs_visitor<>]':
/usr/include/boost/graph/biconnected_components.hpp:162:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components_impl(const Graph & g, ComponentMap comp,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::size_t boost::biconnected_components(const Graph&, ComponentMap) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/biconnected_components.hpp:391:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components(const Graph& g, ComponentMap comp)
^~~~~~~~~~~~~~~~~~~~~~
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:264:47: note: parameter passing for argument of type 'boost::detail::adj_list_any_edge_pmap::bind_<R_adjacency_list<boost::undirectedS, double>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>::type' {aka 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>'} changed in GCC 7.1
int num_comps = biconnected_components(g, component);
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minST.cpp -o minST.o
In file included from minST.cpp:2:
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
kruskal_mst_impl(const Graph& G,
^~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mincut.cpp -o mincut.o
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In constructor 'boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::push_relabel(Graph&, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>; FlowValue = double]':
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
push_relabel(Graph& g_,
^~~~~~~~~~~~
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from mincut.cpp:4:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
/usr/include/boost/graph/push_relabel_max_flow.hpp:700:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
algo(g, cap, res, rev, src, sink, index_map);
^~~~
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
return edmonds_karp_max_flow
~~~~~~~~~~~~~~~~~~~~~
(g, src, sink,
^~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_pmap(get_param(params, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(color_vec.begin(), choose_const_pmap
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(get_param(params, vertex_index),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, vertex_index), color_vec[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pred);
~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ordering.cpp -o ordering.o
In file included from /usr/include/c++/8/list:64,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:40,
from ordering.cpp:1:
/usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::merge(std::__cxx11::list<_Tp, _Alloc>&&, _StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/8/bits/list.tcc:420:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::sort(_StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/8/bits/list.tcc:553:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/list:63,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:40,
from ordering.cpp:1:
/usr/include/c++/8/bits/stl_list.h:1776:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
^~~~~
/usr/include/c++/8/bits/stl_list.h:1776:4: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
^~~~~
In file included from ordering.cpp:8:
/usr/include/boost/graph/sloan_ordering.hpp: In function 'OutputIterator boost::sloan_ordering(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, OutputIterator, ColorMap, DegreeMap, PriorityMap, Weight, Weight) [with Graph = boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >; OutputIterator = __gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >; ColorMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, boost::default_color_type, boost::default_color_type&, boost::vertex_color_t>; DegreeMap = boost::degree_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > > >; PriorityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>; Weight = int]':
/usr/include/boost/graph/sloan_ordering.hpp:257:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
sloan_ordering(Graph& g,
^~~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp:318:7: note: parameter passing for argument of type 'Compare' {aka 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >'} changed in GCC 7.1
priority_list.sort(comp); //Orders the elements in the priority list in an ascending manner
^~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/sloan_ordering.hpp:427:26: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
return sloan_ordering(G, s, e, permutation, color, degree, priority, W1, W2);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c planar.cpp -o planar.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shortestPath.cpp -o shortestPath.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from shortestPath.cpp:4:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* BGL_johnson_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
return johnson_all_pairs_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g, D, id, w,
^~~~~~~~~~~~~
choose_param(get_param(params, distance_compare_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::less<WT>()),
~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_combine_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed_plus<WT>()),
~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_inf_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_zero_t()), WT()) );
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sna.cpp -o sna.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from sna.cpp:4:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
return edmonds_karp_max_flow
~~~~~~~~~~~~~~~~~~~~~
(g, src, sink,
^~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_capacity), g, edge_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_pmap(get_param(params, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, edge_residual_capacity),
~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_const_pmap(get_param(params, edge_reverse), g, edge_reverse),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(color_vec.begin(), choose_const_pmap
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(get_param(params, vertex_index),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g, vertex_index), color_vec[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pred);
~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:159:11: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from sna.cpp:3:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type' {aka 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>'} changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* kCliques(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:162:9: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
return johnson_all_pairs_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g, D, id, w,
^~~~~~~~~~~~~
choose_param(get_param(params, distance_compare_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::less<WT>()),
~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_combine_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed_plus<WT>()),
~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_inf_t()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
std::numeric_limits<WT>::max BOOST_PREVENT_MACRO_SUBSTITUTION()),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
choose_param(get_param(params, distance_zero_t()), WT()) );
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transitive_closure.cpp -o transitive_closure.o
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wavefront.cpp -o wavefront.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RBGL)
I: Using r-bioc-graph for Depends:graph
I: Using r-cran-runit for Recommends:runit
W: Cannot find a debian package for Suggests:Rgraphviz
I: Using r-cran-xml for Suggests:XML
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
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dh_installinit -a -O--buildsystem=R
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dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
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dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
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dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg'
dh_fixperms
find debian -name "*.dot" -exec chmod -x \{\} \;
find debian -name simpleExample.gxl -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.58.1+dfsg'
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rbgl' in '../r-bioc-rbgl_1.58.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rbgl-dbgsym' in '../r-bioc-rbgl-dbgsym_1.58.1+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-rbgl_1.58.1+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-26T05:02:22Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rbgl_1.58.1+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Sat, 24 Nov 2018 14:26:33 +0100
Source: r-bioc-rbgl
Binary: r-bioc-rbgl
Architecture: armhf
Version: 1.58.1+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-rbgl - R interface to the graph algorithms contained in the BOOST librar
Changes:
r-bioc-rbgl (1.58.1+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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Files:
e99221935b58ce63586f73e175529342 6902236 debug optional r-bioc-rbgl-dbgsym_1.58.1+dfsg-1_armhf.deb
f5522356a815bcab64fd8f1e4b58ab66 8462 gnu-r optional r-bioc-rbgl_1.58.1+dfsg-1_armhf.buildinfo
81577e7f489754a2a08a1c7a2852239b 755116 gnu-r optional r-bioc-rbgl_1.58.1+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rbgl-dbgsym_1.58.1+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 6902236 bytes: control archive=544 bytes.
393 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rbgl-dbgsym
Source: r-bioc-rbgl
Version: 1.58.1+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6969
Depends: r-bioc-rbgl (= 1.58.1+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rbgl
Build-Ids: a2bd7c9d916550526c2a25f767ed4c859daa19b1
drwxr-xr-x root/root 0 2018-11-24 13:26 ./
drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/
drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/lib/debug/
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lrwxrwxrwx root/root 0 2018-11-24 13:26 ./usr/share/doc/r-bioc-rbgl-dbgsym -> r-bioc-rbgl
r-bioc-rbgl_1.58.1+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 755116 bytes: control archive=2736 bytes.
675 bytes, 15 lines control
5872 bytes, 75 lines md5sums
Package: r-bioc-rbgl
Version: 1.58.1+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1543
Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-bioc-graph, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Recommends: r-cran-runit
Suggests: r-cran-xml, r-bioc-biocgenerics
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/RBGL/
Description: R interface to the graph algorithms contained in the BOOST library
RBGL is part of the BioConductor GNU R suite. It is a fairly extensive and
comprehensive interface to the graph algorithms contained in the BOOST C++
libraries.
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drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/share/doc/r-bioc-rbgl/
-rw-r--r-- root/root 323 2018-11-24 13:26 ./usr/share/doc/r-bioc-rbgl/README.test
-rw-r--r-- root/root 708 2018-11-24 13:26 ./usr/share/doc/r-bioc-rbgl/changelog.Debian.gz
-rw-r--r-- root/root 12390 2018-11-24 13:26 ./usr/share/doc/r-bioc-rbgl/copyright
drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/share/lintian/
drwxr-xr-x root/root 0 2018-11-24 13:26 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 67 2018-11-24 13:26 ./usr/share/lintian/overrides/r-bioc-rbgl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 17768
Build-Time: 332
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 646
Job: r-bioc-rbgl_1.58.1+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rbgl
Package-Time: 994
Source-Version: 1.58.1+dfsg-1
Space: 17768
Status: successful
Version: 1.58.1+dfsg-1
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Finished at 2018-11-26T05:02:22Z
Build needed 00:16:34, 17768k disk space