r-bioc-rbgl →
1.52.0+dfsg-1 →
armhf → 2017-10-29 00:20:52
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-rbgl 1.52.0+dfsg-1 (armhf) Sun, 29 Oct 2017 00:07:08 +0000 |
+==============================================================================+
Package: r-bioc-rbgl
Version: 1.52.0+dfsg-1
Source Version: 1.52.0+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-9f58ac0d-9d44-4681-9c18-ecf9923a6ed1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.4 MB in 8s (2700 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rbgl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/r-bioc-rbgl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/r-bioc-rbgl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 383 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.52.0+dfsg-1 (dsc) [2144 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.52.0+dfsg-1 (tar) [374 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-rbgl 1.52.0+dfsg-1 (diff) [6624 B]
Fetched 383 kB in 0s (1269 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-7P1pEF/r-bioc-rbgl-1.52.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rbgl-7P1pEF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-h1Iv2j/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-h1Iv2j/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (6361 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 73 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-graph, libboost-dev
Filtered Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-graph, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rbgl-dummy' in '/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive/sbuild-build-depends-r-bioc-rbgl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rbgl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Sources [518 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ Packages [600 B]
Fetched 2451 B in 0s (7277 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rbgl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libreadline5 libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs cpp-7
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core g++-7 gcc-7 gcc-7-base
gettext gettext-base gfortran gfortran-7 groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan4 libatomic1 libblas-dev libblas3
libboost-dev libboost1.62-dev libbsd0 libbz2-dev libcairo2 libcc1-0
libcilkrts5 libcroco3 libcurl3 libdatrie1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-7-dev
libgcc1 libgfortran-7-dev libgfortran4 libglib2.0-0 libgomp1 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc
libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.0.2
libstdc++-7-dev libstdc++6 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo-dev libtk8.6 libtool libubsan0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts gcc-7-locales debtags dh-make gcc-7-doc libstdc++6-7-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg
liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc
liblzma-doc ncurses-doc readline-doc libstdc++-7-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc less www-browser libmail-box-perl ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-sparsem r-cran-xml r-bioc-rbgl r-cran-runit r-cran-cluster gvfs-bin
Recommended packages:
curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix
libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7
groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev
libblas3 libboost-dev libboost1.62-dev libbsd0 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.0.2
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev
libtk8.6 libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev
r-bioc-biocgenerics r-bioc-graph sbuild-build-depends-r-bioc-rbgl-dummy ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libatomic1 libcc1-0 libcilkrts5
libgcc-7-dev libgcc1 libgomp1 libpng16-16 libstdc++-7-dev libstdc++6
libubsan0
15 upgraded, 118 newly installed, 0 to remove and 58 not upgraded.
Need to get 110 MB of archives.
After this operation, 57.0 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h1Iv2j/apt_archive ./ sbuild-build-depends-r-bioc-rbgl-dummy 0.invalid.0 [806 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.2.0-11 [63.1 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.2.0-11 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:7.2.0-11 [38.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 7.2.0-11 [6732 B]
Get:6 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.2.0-11 [302 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.2.0-11 [106 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.2.0-11 [35.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.2.0-11 [5136 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 7.2.0-11 [30.3 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.2.0-11 [5585 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.2.0-11 [5458 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.2.0-11 [670 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.2.0-11 [1500 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 7.2.0-11 [335 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpng16-16 armhf 1.6.34-1 [270 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8-0.2 [393 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.3-0.2 [435 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.039-1 [18.2 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.039-1 [11.6 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.9.2 [979 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-11 [191 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.14.10-1 [692 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.26.0-1 [72.2 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-4 [42.4 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.55.1-1 [264 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.26-3 [166 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.26-3 [49.6 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.12-1 [179 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-6 [71.5 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.5.1-1 [661 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.12-1 [72.0 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.12-1 [61.2 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.7+dfsg-1 [869 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-5 [218 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-1+b2 [49.3 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.7-1 [660 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.2-1 [22.9 MB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.2.0-11 [231 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.2.0-11 [5441 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:108 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.0+20170902-1 [66.6 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.0+20170902-1 [151 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2 [178 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-4 [235 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-4 [227 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-4 [149 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-4 [565 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 57.1-8 [156 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 57.1-8 [15.8 MB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.2-1 [4408 B]
Get:129 http://172.17.0.1/private buster-staging/main armhf dh-r all 20161219 [8794 B]
Get:130 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4+b2 [7053 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.22.1-1 [564 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-bioc-graph armhf 1.54.0-1 [1321 kB]
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Creating config file /etc/papersize with new version
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Setting up libharfbuzz0b:armhf (1.5.1-1) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
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Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up libboost-dev:armhf (1.62.0.1+b8) ...
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up liblapack-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:7.2.0-1d1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfontconfig1:armhf (2.12.3-0.2) ...
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Setting up libk5crypto3:armhf (1.15.1-2) ...
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Setting up po-debconf (1.0.20) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
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Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.15.1-2) ...
Setting up libxft2:armhf (2.3.2-1+b2) ...
Setting up fontconfig (2.12.3-0.2) ...
Regenerating fonts cache... done.
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.15.1-2) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:armhf (1.40.12-1) ...
Setting up libcairo2:armhf (1.14.10-1) ...
Setting up libcurl3:armhf (7.55.1-1) ...
Setting up libtk8.6:armhf (8.6.7-1) ...
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Setting up libpangocairo-1.0-0:armhf (1.40.12-1) ...
Setting up r-base-core (3.4.2-1) ...
Creating config file /etc/R/Renviron with new version
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Setting up r-bioc-biocgenerics (0.22.1-1) ...
Setting up r-bioc-graph (1.54.0-1) ...
Setting up dh-autoreconf (14) ...
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Setting up debhelper (10.9.2) ...
Setting up dh-r (20161219) ...
Setting up sbuild-build-depends-r-bioc-rbgl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
Processing triggers for systemd (234-3) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-11 gcc-7_7.2.0-11 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-11 libstdc++6_7.2.0-11 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-11 dash_0.5.8-2.5 dctrl-tools_2.24-2 debconf_1.5.63 debhelper_10.9.2 debianutils_4.8.2 dh-autoreconf_14 dh-r_20161219 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.3-0.2 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.2.0-11 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-11 gcc-7-base_7.2.0-11 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.2.0-11 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-8 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-11 libassuan0_2.4.3-3 libatomic1_7.2.0-11 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libbinutils_2.29.1-3+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.29.2-5 libboost-dev_1.62.0.1+b8 libboost1.62-dev_1.62.0+dfsg-4+b2 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcairo2_1.14.10-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-11 libcilkrts5_7.2.0-11 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libcurl3_7.55.1-1 libdatrie1_0.2.10-5 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.230 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-5 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.039-1 libfontconfig1_2.12.3-0.2 libfreetype6_2.8-0.2 libgcc-7-dev_7.2.0-11 libgcc1_1:7.2.0-11 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgfortran-7-dev_7.2.0-11 libgfortran4_7.2.0-11 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-11 libgpg-error0_1.27-3 libgraphite2-3_1.3.10-6 libgssapi-krb5-2_1.15.1-2 libharfbuzz0b_1.5.1-1 libhogweed4_3.3-2 libice6_2:1.0.9-2 libicu-dev_57.1-8 libicu57_57.1-8 libidn11_1.33-2 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libtinfo5_6.0+20170902-1 libtk8.6_8.6.7-1 libtool_2.4.6-2 libubsan0_7.2.0-11 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-1+b2 libxml2_2.9.4+dfsg1-5 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 pkg-config_0.29-4 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 r-base-core_3.4.2-1 r-base-dev_3.4.2-1 r-bioc-biocgenerics_0.22.1-1 r-bioc-graph_1.54.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rbgl-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 ucf_3.0036 udev_234-3 unzip_6.0-21 util-linux_2.29.2-5 x11-common_1:7.7+19 xauth_1:1.0.9-1 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Oct 22 17:26:49 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rbgl_1.52.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rbgl in /<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg
dpkg-source: info: unpacking r-bioc-rbgl_1.52.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rbgl_1.52.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying boost-1.61.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-9f58ac0d-9d44-4681-9c18-ecf9923a6ed1
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rbgl
dpkg-buildpackage: info: source version 1.52.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-rbgl-1.52.0+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: RBGL Version: 1.52.0
I: Building using R version 3.4.2-1
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Sun, 22 Oct 2017 19:20:34 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-rbgl-1.52.0\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rbgl-1.52.0\+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 22 Oct 2017 19:20:34 +0200'"
* installing *source* package 'RBGL' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg/src'
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bbc.cpp -o bbc.o
In file included from bbc.cpp:2:0:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_unweighted_shortest_paths]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::dummy_property_map; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:452:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:377:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
In file included from bbc.cpp:3:0:
/usr/include/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap) [with MutableGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; Done = clustering_threshold; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/bc_clustering.hpp:109:1: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(MutableGraph& g, Done done,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bc_clustering.hpp: In function 'SEXPREC* BGL_betweenness_centrality_clustering(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/bc_clustering.hpp:144:36: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
betweenness_centrality_clustering(g, done, edge_centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
get(vertex_index, g));
~~~~~~~~~~~~~~~~~~~~~
In file included from bbc.cpp:2:0:
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>; DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>; PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, unsigned int, unsigned int&>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>; ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_impl(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:288:3: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_dispatch2(const Graph&, CentralityMap, EdgeCentralityMap, WeightMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >; CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>; EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>; WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>]':
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(const Graph& g,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:416:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
detail::graph::brandes_betweenness_centrality_impl(g, centrality,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~
incoming, distance,
~~~~~~~~~~~~~~~~~~~
dependency, path_count,
~~~~~~~~~~~~~~~~~~~~~~~
vertex_index,
~~~~~~~~~~~~~
shortest_paths);
~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:404:53: note: parameter passing for argument of type 'boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp: In function 'SEXPREC* BGL_brandes_betweenness_centrality(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>' changed in GCC 7.1
brandes_betweenness_centrality_dispatch2(g, centrality, edge_centrality_map,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
weight_map, vertex_index);
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>' changed in GCC 7.1
/usr/include/boost/graph/betweenness_centrality.hpp:492:47: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cliques.cpp -o cliques.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clusteringCoef.cpp -o clusteringCoef.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dominatorTree.cpp -o dominatorTree.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /usr/include/c++/7/vector:69:0,
from RBGL.hpp:12,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode}; _Tp = detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode; _Alloc = std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> >::iterator {aka __gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void detail::OptimumBranching<TOptimumIsMaximum, TAttemptToSpan, TGraphIsDense, TEdgeListGraph, TVertexIndexMap, TWeightMap, TInputIterator, TOutputIterator>::operator()() [with bool TOptimumIsMaximum = true; bool TAttemptToSpan = false; bool TGraphIsDense = false; TEdgeListGraph = R_adjacency_list<boost::directedS, double>; TVertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; TWeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; TInputIterator = unsigned int*; TOutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode*, std::vector<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode, std::allocator<detail::OptimumBranching<true, false, false, R_adjacency_list<boost::directedS, double>, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, unsigned int*, std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >::EdgeNode> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hcs.cpp -o hcs.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c incrConnComp.cpp -o incrConnComp.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interfaces.cpp -o interfaces.o
In file included from interfaces.cpp:8:0:
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::pair<unsigned int, OutputIterator> boost::detail::biconnected_components_impl(const Graph&, ComponentMap, OutputIterator, VertexIndexMap, DiscoverTimeMap, LowPointMap, PredecessorMap, DFSVisitor) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; OutputIterator = boost::graph_detail::dummy_output_iterator; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; DiscoverTimeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; LowPointMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; PredecessorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; DFSVisitor = boost::dfs_visitor<>]':
/usr/include/boost/graph/biconnected_components.hpp:162:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components_impl(const Graph & g, ComponentMap comp,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/biconnected_components.hpp: In function 'std::size_t boost::biconnected_components(const Graph&, ComponentMap) [with Graph = R_adjacency_list<boost::undirectedS, double>; ComponentMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/biconnected_components.hpp:391:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
biconnected_components(const Graph& g, ComponentMap comp)
^~~~~~~~~~~~~~~~~~~~~~
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:264:47: note: parameter passing for argument of type 'boost::detail::adj_list_any_edge_pmap::bind_<R_adjacency_list<boost::undirectedS, double>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>::type {aka boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>}' changed in GCC 7.1
int num_comps = biconnected_components(g, component);
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minST.cpp -o minST.o
In file included from minST.cpp:2:0:
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
kruskal_mst_impl(const Graph& G,
^~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:48:5: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/kruskal_min_spanning_tree.hpp:112:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
detail::kruskal_mst_impl
~~~~~~~~~~~~~~~~~~~~~~~~
(g, spanning_tree_edges,
^~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(rank_map.begin(), get(vertex_index, g), rank_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make_iterator_property_map(pred_map.begin(), get(vertex_index, g), pred_map[0]),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
get(edge_weight, g));
~~~~~~~~~~~~~~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mincut.cpp -o mincut.o
In file included from mincut.cpp:4:0:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In constructor 'boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::push_relabel(Graph&, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::vertex_descriptor, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>; FlowValue = double]':
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
push_relabel(Graph& g_,
^~~~~~~~~~~~
/usr/include/boost/graph/push_relabel_max_flow.hpp:114:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19:0,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from mincut.cpp:4:0:
/usr/include/boost/graph/push_relabel_max_flow.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
/usr/include/boost/graph/push_relabel_max_flow.hpp:700:7: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
algo(g, cap, res, rev, src, sink, index_map);
^~~~
In file included from /usr/include/boost/graph/edge_connectivity.hpp:19:0,
from mincut.hpp:4,
from mincut.cpp:2:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:167:16: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
pred);
^
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:167:16: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ordering.cpp -o ordering.o
In file included from /usr/include/c++/7/list:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:40,
from ordering.cpp:1:
/usr/include/c++/7/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::merge(std::__cxx11::list<_Tp, _Alloc>&&, _StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/7/bits/list.tcc:419:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::sort(_StrictWeakOrdering) [with _StrictWeakOrdering = boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >; _Tp = unsigned int; _Alloc = std::allocator<unsigned int>]':
/usr/include/c++/7/bits/list.tcc:552:7: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/list:63:0,
from /usr/include/boost/graph/adjacency_list.hpp:18,
from RBGL.hpp:40,
from ordering.cpp:1:
/usr/include/c++/7/bits/stl_list.h:1675:9: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_list.h:1675:9: note: parameter passing for argument of type 'boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >' changed in GCC 7.1
{ merge(std::move(__x), __comp); }
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from ordering.cpp:8:0:
/usr/include/boost/graph/sloan_ordering.hpp: In function 'OutputIterator boost::sloan_ordering(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, OutputIterator, ColorMap, DegreeMap, PriorityMap, Weight, Weight) [with Graph = boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >; OutputIterator = __gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >; ColorMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, boost::default_color_type, boost::default_color_type&, boost::vertex_color_t>; DegreeMap = boost::degree_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > > >; PriorityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>; Weight = int]':
/usr/include/boost/graph/sloan_ordering.hpp:257:3: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
sloan_ordering(Graph& g,
^~~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp:318:7: note: parameter passing for argument of type 'Compare {aka boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>, std::greater<double> >}' changed in GCC 7.1
priority_list.sort(comp); //Orders the elements in the priority list in an ascending manner
^~~~~~~~~~~~~
/usr/include/boost/graph/sloan_ordering.hpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/sloan_ordering.hpp:427:80: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >, boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double> > > >*, double, double&, boost::vertex_priority_t>' changed in GCC 7.1
return sloan_ordering(G, s, e, permutation, color, degree, priority, W1, W2);
^
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c planar.cpp -o planar.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shortestPath.cpp -o shortestPath.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
from shortestPath.cpp:4:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>' changed in GCC 7.1
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from shortestPath.cpp:4:0:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type {aka boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>}' changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* BGL_johnson_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:169:67: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
choose_param(get_param(params, distance_zero_t()), WT()) );
^
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sna.cpp -o sna.o
In file included from /usr/include/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
from sna.cpp:3:
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>' changed in GCC 7.1
bool bellman_ford_shortest_paths(EdgeListGraph& g, Size N,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/bellman_ford_shortest_paths.hpp:91:8: note: parameter passing for argument of type 'boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>' changed in GCC 7.1
In file included from sna.cpp:4:0:
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'typename boost::property_traits<IndexMap>::value_type boost::edmonds_karp_max_flow(Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, typename boost::graph_traits<Graph>::vertex_descriptor, CapacityEdgeMap, ResidualCapacityEdgeMap, ReverseEdgeMap, ColorMap, PredEdgeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >; CapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>; ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>; ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_reverse_t>; ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type> >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::default_color_type, boost::default_color_type&>; PredEdgeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>*, std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&>]':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
edmonds_karp_max_flow
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:79:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
/usr/include/boost/graph/edmonds_karp_max_flow.hpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:167:16: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_capacity_t>' changed in GCC 7.1
pred);
^
/usr/include/boost/graph/edmonds_karp_max_flow.hpp:167:16: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > >, boost::edge_residual_capacity_t>' changed in GCC 7.1
In file included from sna.cpp:3:0:
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:40:3: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph& g1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:109:9: note: parameter passing for argument of type 'boost::vec_adj_list_any_vertex_pa::bind_<boost::vertex_distance_t, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::property<boost::vertex_distance_t, double, boost::no_property> >::type {aka boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>}' changed in GCC 7.1
if (bellman_ford_shortest_paths
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(g2, num_vertices(g2), w, pred, d, combine, compare, bvis)) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp: In function 'SEXPREC* kCliques(SEXP, SEXP, SEXP, SEXP)':
/usr/include/boost/graph/johnson_all_pairs_shortest.hpp:169:67: note: parameter passing for argument of type 'boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>' changed in GCC 7.1
choose_param(get_param(params, distance_zero_t()), WT()) );
^
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transitive_closure.cpp -o transitive_closure.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-UavZkw/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wavefront.cpp -o wavefront.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg/debian/r-bioc-rbgl/usr/lib/R/site-library/RBGL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RBGL)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 286.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 287.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 290.
I: Using r-bioc-graph for Depends:graph
W: Cannot find a debian package for Suggests:Rgraphviz
I: Using r-cran-xml for Suggests:XML
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_systemd_enable -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_systemd_start -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg'
dh_fixperms
find debian -name "*.dot" -exec chmod -x \{\} \;
find debian -name simpleExample.gxl -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rbgl-1.52.0+dfsg'
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rbgl' in '../r-bioc-rbgl_1.52.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rbgl-dbgsym' in '../r-bioc-rbgl-dbgsym_1.52.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-rbgl_1.52.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-rbgl-1.52.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-29T00:20:50Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rbgl_1.52.0+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Sun, 22 Oct 2017 19:20:34 +0200
Source: r-bioc-rbgl
Binary: r-bioc-rbgl
Architecture: armhf
Version: 1.52.0+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-rbgl - R interface to the graph algorithms contained in the BOOST librar
Changes:
r-bioc-rbgl (1.52.0+dfsg-1) unstable; urgency=medium
.
* Team upload
* New upstream version
* Secure URI in watch file
* Standards-Version: 4.1.1
* debhelper 10
* Add debian/README.source to document binary data files
* Do not parse d/changelog
Checksums-Sha1:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rbgl-dbgsym_1.52.0+dfsg-1_armhf.deb
------------------------------------------
new debian package, version 2.0.
size 4842920 bytes: control archive=460 bytes.
399 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rbgl-dbgsym
Source: r-bioc-rbgl
Version: 1.52.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4941
Depends: r-bioc-rbgl (= 1.52.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rbgl
Build-Ids: f36cc20718aa52ba6e9c071f62f295abffbebbc1
drwxr-xr-x root/root 0 2017-10-22 17:20 ./
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/lib/
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/share/
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-10-22 17:20 ./usr/share/doc/r-bioc-rbgl-dbgsym -> r-bioc-rbgl
r-bioc-rbgl_1.52.0+dfsg-1_armhf.deb
-----------------------------------
new debian package, version 2.0.
size 683348 bytes: control archive=2811 bytes.
670 bytes, 14 lines control
5872 bytes, 75 lines md5sums
Package: r-bioc-rbgl
Version: 1.52.0+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1472
Depends: r-base-core (>= 3.4.2-1), r-api-3.4, r-bioc-graph, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Suggests: r-cran-xml, r-cran-runit, r-bioc-biocgenerics
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/RBGL/
Description: R interface to the graph algorithms contained in the BOOST library
RBGL is part of the BioConductor GNU R suite. It is a fairly extensive and
comprehensive interface to the graph algorithms contained in the BOOST C++
libraries.
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drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/lib/R/site-library/RBGL/unitTests/
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-rw-r--r-- root/root 12390 2016-11-11 21:17 ./usr/share/doc/r-bioc-rbgl/copyright
drwxr-xr-x root/root 0 2017-10-22 17:20 ./usr/share/lintian/
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-rw-r--r-- root/root 67 2016-09-01 09:35 ./usr/share/lintian/overrides/r-bioc-rbgl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13580
Build-Time: 493
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 312
Job: r-bioc-rbgl_1.52.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rbgl
Package-Time: 822
Source-Version: 1.52.0+dfsg-1
Space: 13580
Status: successful
Version: 1.52.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2017-10-29T00:20:50Z
Build needed 00:13:42, 13580k disk space