r-bioc-makecdfenv →
1.46.0-1 →
armhf → 2015-11-08 06:33:59
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-makecdfenv 1.46.0-1 (armhf) 08 Nov 2015 06:22 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-makecdfenv
Version: 1.46.0-1
Source Version: 1.46.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-makecdfenv-qcPGBX/r-bioc-makecdfenv-1.46.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-makecdfenv-qcPGBX' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-db0877ec-d693-4aa1-bea2-aaacb73cebc6' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8448 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.4 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.9 MB in 36s (522 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-makecdfenv' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-makecdfenv/trunk/
Need to get 3312 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-bioc-makecdfenv 1.46.0-1 (dsc) [2151 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-bioc-makecdfenv 1.46.0-1 (tar) [3305 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-bioc-makecdfenv 1.46.0-1 (diff) [4356 B]
Fetched 3312 kB in 1s (1967 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-lJpCII/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12031 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-bioc-affy (>= 1.44.0)
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-bioc-affy (>= 1.44.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-makecdfenv-dummy' in '/«BUILDDIR»/resolver-5RYY4M/apt_archive/sbuild-build-depends-r-bioc-makecdfenv-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-makecdfenv build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils ca-certificates cdbs debhelper dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-5 groff-base intltool-debian libarchive-zip-perl libblas-common
libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1
libexpat1 libffi6 libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu55
libidn11 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 liblzma-dev libmagic1 libncurses5 libncurses5-dev libncursesw5
libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev
libreadline-dev libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db
libsm6 libssh2-1 libssl1.0.0 libssl1.0.2 libtasn1-6 libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtinfo-dev libtinfo5 libtk8.6
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
openssl po-debconf r-base-core r-base-dev r-bioc-affy r-bioc-affyio
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller
r-bioc-preprocesscore ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
libgfortran3-dbg groff gnutls-bin krb5-doc krb5-user liblzma-doc ncurses-doc
readline-doc tcl8.6 tk8.6 less www-browser libmail-box-perl r-doc-info
r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libgpm2 libsasl2-modules xml-core
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils ca-certificates cdbs debhelper dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-5 groff-base intltool-debian libarchive-zip-perl libblas-common
libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1
libexpat1 libffi6 libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu55
libidn11 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev libnettle6 libnghttp2-14
libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0
libssl1.0.2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo-dev libtk8.6 libunistring0 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxss1 libxt6 man-db openssl po-debconf r-base-core
r-base-dev r-bioc-affy r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocinstaller r-bioc-preprocesscore
sbuild-build-depends-r-bioc-makecdfenv-dummy ucf unzip x11-common xdg-utils
zip zlib1g-dev
The following packages will be upgraded:
libncurses5 libncursesw5 libtinfo5
3 upgraded, 118 newly installed, 0 to remove and 2 not upgraded.
Need to get 85.2 MB/85.2 MB of archives.
After this operation, 254 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libtinfo5 armhf 6.0+20151024-1 [279 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libncurses5 armhf 6.0+20151024-1 [74.2 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libncursesw5 armhf 6.0+20151024-1 [94.1 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.4-1 [974 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.6-2 [397 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.1-1 [2480 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-5 [7378 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0v5 armhf 2:8.35-7.2 [141 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3+b1 [40.6 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+12 [251 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libssl1.0.2 armhf 1.0.2d-3 [881 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libnettle6 armhf 3.1.1-4 [200 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libhogweed4 armhf 3.1.1-4 [126 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-3 [94.2 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.7-2 [44.3 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.18-1 [645 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.13.2+dfsg-3 [56.1 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.13.2+dfsg-3 [109 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.13.2+dfsg-3 [258 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.13.2+dfsg-3 [129 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.32-3 [110 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-14 [65.5 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-14 [96.8 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1 [197 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main openssl armhf 1.0.2d-3 [682 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main ca-certificates all 20150426 [208 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main cdbs all 0.4.130 [76.4 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.013-1 [10.9 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libtimedate-perl all 2.3000-2 [42.2 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.013-1 [7308 B]
Get:66 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.2.1-23+rpi1 [154 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libgfortran-5-dev armhf 5.2.1-23+rpi1 [183 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main gfortran-5 armhf 5.2.1-23+rpi1 [23.7 MB]
Get:70 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:5.2.1-4+rpi2 [1364 B]
Get:71 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:72 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.33.2-2 [444 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3+b1 [16.9 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3+b1 [11.4 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.4-1 [687 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libnghttp2-14 armhf 1.4.0-1 [69.9 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1+b1 [54.5 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.45.0-1 [242 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.10-1 [32.2 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.3.3-1 [61.1 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 1.0.1-1+b1 [501 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.4.1-2 [415 kB]
Get:88 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.4.1-2 [51.9 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2.1 [248 kB]
Get:92 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 6.0+20151024-1 [66.1 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 6.0+20151024-1 [154 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.23-1 [163 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-3 [44.6 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.38.1-1 [292 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.38.1-1 [229 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.38.1-1 [218 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main libpcre16-3 armhf 2:8.35-7.2 [221 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main libpcre32-3 armhf 2:8.35-7.2 [214 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-7.2 [546 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2+b2 [236 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8+b3 [105 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8+b3 [958 B]
Get:107 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.5-1 [200 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.5-1 [155 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main zip armhf 3.0-11 [212 kB]
Get:111 http://172.17.0.1/private/ stretch-staging/main unzip armhf 6.0-19 [142 kB]
Get:112 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.1-1 [71.1 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main r-base-core armhf 3.2.2-1 [20.2 MB]
Get:114 http://172.17.0.1/private/ stretch-staging/main r-base-dev all 3.2.2-1 [4292 B]
Get:115 http://172.17.0.1/private/ stretch-staging/main r-bioc-biocgenerics all 0.16.0-1 [474 kB]
Get:116 http://172.17.0.1/private/ stretch-staging/main r-bioc-biobase armhf 2.30.0-1 [1999 kB]
Get:117 http://172.17.0.1/private/ stretch-staging/main r-bioc-affyio armhf 1.40.0-1 [66.4 kB]
Get:118 http://172.17.0.1/private/ stretch-staging/main r-bioc-biocinstaller all 1.20.0-1 [56.0 kB]
Get:119 http://172.17.0.1/private/ stretch-staging/main r-bioc-preprocesscore armhf 1.32.0-1 [110 kB]
Get:120 http://172.17.0.1/private/ stretch-staging/main r-bioc-affy armhf 1.48.0-1 [1382 kB]
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Processing triggers for libc-bin (2.19-22) ...
Processing triggers for systemd (227-2) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.4-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libfreetype6:armhf (2.6-2) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
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Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libglib2.0-0:armhf (2.46.1-1) ...
No schema files found: doing nothing.
Setting up libicu55:armhf (55.1-5) ...
Setting up libxml2:armhf (2.9.2+zdfsg1-4) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0v5:armhf (2:8.35-7.2) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1) ...
Setting up libxcb1:armhf (1.10-3+b1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up x11-common (1:7.7+12) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.6:armhf (8.6.4+dfsg-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libssl1.0.2:armhf (1.0.2d-3) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up libnettle6:armhf (3.1.1-4) ...
Setting up libhogweed4:armhf (3.1.1-4) ...
Setting up libp11-kit0:armhf (0.23.1-3) ...
Setting up libtasn1-6:armhf (4.7-2) ...
Setting up libgnutls-deb0-28:armhf (3.3.18-1) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-3) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-3) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-3) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-3) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1) ...
Setting up openssl (1.0.2d-3) ...
Setting up ca-certificates (20150426) ...
Setting up cdbs (0.4.130) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.53-1) ...
Setting up libfile-stripnondeterminism-perl (0.013-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libgfortran3:armhf (5.2.1-23+rpi1) ...
Setting up libgfortran-5-dev:armhf (5.2.1-23+rpi1) ...
Setting up gfortran-5 (5.2.1-23+rpi1) ...
Setting up gfortran (4:5.2.1-4+rpi2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up libpixman-1-0:armhf (0.33.2-2) ...
Setting up libxcb-render0:armhf (1.10-3+b1) ...
Setting up libxcb-shm0:armhf (1.10-3+b1) ...
Setting up libcairo2:armhf (1.14.4-1) ...
Setting up libnghttp2-14:armhf (1.4.0-1) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1+b1) ...
Setting up libcurl3:armhf (7.45.0-1) ...
Setting up libdatrie1:armhf (0.2.10-1) ...
Setting up libgraphite2-3:armhf (1.3.3-1) ...
Setting up libharfbuzz0b:armhf (1.0.1-1+b1) ...
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.1-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.4.1-2) ...
Setting up libjpeg-dev (1:1.4.1-2) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2.1) ...
Setting up libtinfo-dev:armhf (6.0+20151024-1) ...
Setting up libncurses5-dev:armhf (6.0+20151024-1) ...
Setting up libthai-data (0.1.23-1) ...
Setting up libthai0:armhf (0.1.22-3) ...
Setting up libpango-1.0-0:armhf (1.38.1-1) ...
Setting up libpangoft2-1.0-0:armhf (1.38.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.38.1-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre16-3:armhf (2:8.35-7.2) ...
Setting up libpcre32-3:armhf (2:8.35-7.2) ...
Setting up libpcre3-dev:armhf (2:8.35-7.2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libpng12-dev:armhf (1.2.50-2+b2) ...
Setting up libreadline6-dev:armhf (6.3-8+b3) ...
Setting up libreadline-dev:armhf (6.3-8+b3) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libtiff5:armhf (4.0.5-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up zip (3.0-11) ...
Setting up unzip (6.0-19) ...
Setting up xdg-utils (1.1.1-1) ...
Setting up r-base-core (3.2.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.2.2-1) ...
Setting up r-bioc-biocgenerics (0.16.0-1) ...
Setting up r-bioc-biobase (2.30.0-1) ...
Setting up r-bioc-affyio (1.40.0-1) ...
Setting up r-bioc-biocinstaller (1.20.0-1) ...
Setting up r-bioc-preprocesscore (1.32.0-1) ...
Setting up r-bioc-affy (1.48.0-1) ...
Setting up debhelper (9.20151005) ...
Setting up sbuild-build-depends-r-bioc-makecdfenv-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.013-1) ...
Processing triggers for libc-bin (2.19-22) ...
Processing triggers for systemd (227-2) ...
Processing triggers for ca-certificates (20150426) ...
Updating certificates in /etc/ssl/certs...
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-7 dpkg-dev_1.18.3 g++-5_5.2.1-23+rpi1 gcc-5_5.2.1-23+rpi1 libc6-dev_2.19-22 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-7 bsdmainutils_9.0.6 bsdutils_1:2.27-3 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20150426 cdbs_0.4.130 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-23+rpi1 dash_0.5.7-4 debconf_1.5.57 debconf-i18n_1.5.57 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-strip-nondeterminism_0.013-1 diffutils_1:3.3-2 dmsetup_2:1.02.104-1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-23+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-5 gcc-5_5.2.1-23+rpi1 gcc-5-base_5.2.1-23+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gfortran_4:5.2.1-4+rpi2 gfortran-5_5.2.1-23+rpi1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan2_5.2.1-23+rpi1 libatomic1_5.2.1-23+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.27-3 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcairo2_1.14.4-1 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-23+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.45.0-1 libdatrie1_0.2.10-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.2-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.3 libdrm2_2.4.65-3 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27-3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.013-1 libfontconfig1_2.11.0-6.3 libfreetype6_2.6-2 libgc1c2_1:7.4.2-7 libgcc-5-dev_5.2.1-23+rpi1 libgcc1_1:5.2.1-23+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.2.1-23+rpi1 libgfortran3_5.2.1-23+rpi1 libglib2.0-0_2.46.1-1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgnutls-deb0-28_3.3.18-1 libgomp1_5.2.1-23+rpi1 libgpg-error0_1.20-1 libgraphite2-3_1.3.3-1 libgssapi-krb5-2_1.13.2+dfsg-3 libharfbuzz0b_1.0.1-1+b1 libhogweed4_3.1.1-4 libice6_2:1.0.9-1+b1 libicu55_55.1-5 libidn11_1.32-3 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-dev_1:1.4.1-2 libjpeg62-turbo_1:1.4.1-2 libjpeg62-turbo-dev_1:1.4.1-2 libk5crypto3_1.13.2+dfsg-3 libkeyutils1_1.5.9-8 libklibc_2.0.4-2+rpi1 libkmod2_21-1 libkrb5-3_1.13.2+dfsg-3 libkrb5support0_1.13.2+dfsg-3 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.42+dfsg-2+rpi1 liblocale-gettext-perl_1.07-1 liblzma-dev_5.1.1alpha+20120614-2.1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-1 libncurses5-dev_6.0+20151024-1 libncursesw5_6.0+20151024-1 libnettle6_3.1.1-4 libnghttp2-14_1.4.0-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.38.1-1 libpangocairo-1.0-0_1.38.1-1 libpangoft2-1.0-0_1.38.1-1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.35-7.2 libpcre3_2:8.35-7.2 libpcre3-dev_2:8.35-7.2 libpcre32-3_2:8.35-7.2 libpcrecpp0v5_2:8.35-7.2 libpipeline1_1.4.1-1 libpixman-1-0_0.33.2-2 libpng12-0_1.2.50-2+b2 libpng12-dev_1.2.50-2+b2 libprocps4_2:3.3.10-2 libreadline-dev_6.3-8+b3 libreadline6_6.3-8+b3 libreadline6-dev_6.3-8+b3 librtmp1_2.4+20150115.gita107cef-1+b1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsm6_2:1.2.2-1+b1 libsmartcols1_2.27-3 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2d-1 libssl1.0.2_1.0.2d-3 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 libsystemd0_227-2 libtasn1-6_4.7-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.23-1 libthai0_0.1.22-3 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20151024-1 libtinfo5_6.0+20151024-1 libtk8.6_8.6.4+dfsg-2 libubsan0_5.2.1-23+rpi1 libudev1_227-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27-3 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3+b1 libxcb-shm0_1.10-3+b1 libxcb1_1.10-3+b1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.2+zdfsg1-4 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.4-1 mawk_1.3.3-17 mount_2.27-3 multiarch-support_2.19-22 nano_2.4.2-1 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 openssl_1.0.2d-3 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 r-base-core_3.2.2-1 r-base-dev_3.2.2-1 r-bioc-affy_1.48.0-1 r-bioc-affyio_1.40.0-1 r-bioc-biobase_2.30.0-1 r-bioc-biocgenerics_0.16.0-1 r-bioc-biocinstaller_1.20.0-1 r-bioc-preprocesscore_1.32.0-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-makecdfenv-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_227-2 systemd-sysv_227-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015g-1 ucf_3.0030 udev_227-2 unzip_6.0-19 util-linux_2.27-3 x11-common_1:7.7+12 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Nov 2 08:13:44 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-makecdfenv_1.46.0-1.dsc
dpkg-source: info: extracting r-bioc-makecdfenv in r-bioc-makecdfenv-1.46.0
dpkg-source: info: unpacking r-bioc-makecdfenv_1.46.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-makecdfenv_1.46.0-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-db0877ec-d693-4aa1-bea2-aaacb73cebc6
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-makecdfenv
dpkg-buildpackage: source version 1.46.0-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-makecdfenv-1.46.0
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-bioc-makecdfenv.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Mon, 02 Nov 2015 09:00:44 +0100\"" \
; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Mon, 02 Nov 2015 09:00:44 +0100\"" \
; \
fi
* installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
make[1]: Entering directory '/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DHAVE_ZLIB=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'openCDFfile':
read_cdffile.c:340:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(buffy, SIZE_LINE, affyFile->stream);
^
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o makecdfenv.so read_cdffile.o -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Entering directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library/makecdfenv/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (makecdfenv)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library/makecdfenv/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/lib/R/site-library/makecdfenv/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-makecdfenv/usr/share/lintian/overrides/r-bioc-makecdfenv; \
fi
Adding cdbs dependencies to debian/r-bioc-makecdfenv.substvars
dh_installdirs -pr-bioc-makecdfenv
dh_installdocs -pr-bioc-makecdfenv
dh_installexamples -pr-bioc-makecdfenv
dh_installman -pr-bioc-makecdfenv
dh_installinfo -pr-bioc-makecdfenv
dh_installmenu -pr-bioc-makecdfenv
dh_installcron -pr-bioc-makecdfenv
dh_installinit -pr-bioc-makecdfenv
dh_installdebconf -pr-bioc-makecdfenv
dh_installemacsen -pr-bioc-makecdfenv
dh_installcatalogs -pr-bioc-makecdfenv
dh_installpam -pr-bioc-makecdfenv
dh_installlogrotate -pr-bioc-makecdfenv
dh_installlogcheck -pr-bioc-makecdfenv
dh_installchangelogs -pr-bioc-makecdfenv
dh_installudev -pr-bioc-makecdfenv
dh_lintian -pr-bioc-makecdfenv
dh_bugfiles -pr-bioc-makecdfenv
dh_install -pr-bioc-makecdfenv
dh_link -pr-bioc-makecdfenv
dh_installmime -pr-bioc-makecdfenv
dh_installgsettings -pr-bioc-makecdfenv
dh_strip -pr-bioc-makecdfenv
dh_compress -pr-bioc-makecdfenv
dh_fixperms -pr-bioc-makecdfenv
dh_makeshlibs -pr-bioc-makecdfenv
dh_installdeb -pr-bioc-makecdfenv
dh_perl -pr-bioc-makecdfenv
dh_shlibdeps -pr-bioc-makecdfenv
dh_gencontrol -pr-bioc-makecdfenv
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-makecdfenv
dh_builddeb -pr-bioc-makecdfenv
dpkg-deb: building package 'r-bioc-makecdfenv' in '../r-bioc-makecdfenv_1.46.0-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../r-bioc-makecdfenv_1.46.0-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-makecdfenv-1.46.0
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151108-0633
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-makecdfenv_1.46.0-1_armhf.changes:
─────────────────────────────────────────
Format: 1.8
Date: Mon, 02 Nov 2015 09:00:44 +0100
Source: r-bioc-makecdfenv
Binary: r-bioc-makecdfenv
Architecture: armhf
Version: 1.46.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-makecdfenv - BioConductor CDF Environment Maker
Changes:
r-bioc-makecdfenv (1.46.0-1) unstable; urgency=medium
.
* New upstream version
* lintian override for false positive
Checksums-Sha1:
7e2b8486e5029f4542e611120b0d49c05a0f9d35 3298504 r-bioc-makecdfenv_1.46.0-1_armhf.deb
Checksums-Sha256:
eeb6d554b052b0083aec2a447135aa8821b029a6f74f399caad04f2c6920be02 3298504 r-bioc-makecdfenv_1.46.0-1_armhf.deb
Files:
629b66e81378cee6ddd36582cdc1a979 3298504 gnu-r optional r-bioc-makecdfenv_1.46.0-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-makecdfenv_1.46.0-1_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
size 3298504 bytes: control archive=1871 bytes.
684 bytes, 14 lines control
3546 bytes, 42 lines md5sums
Package: r-bioc-makecdfenv
Version: 1.46.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3479
Depends: r-base-core (>= 3.2.2-1), r-api-3, libc6 (>= 2.4), zlib1g (>= 1:1.1.4), r-bioc-affy (>= 1.44.0)
Section: gnu-r
Priority: optional
Homepage: http://bioconductor.org/packages/release/bioc/html/makecdfenv.html
Description: BioConductor CDF Environment Maker
This package has two functions. One reads a Affymetrix chip description
file (CDF) and creates a hash table environment containing the
location/probe set membership mapping. The other creates a package that
automatically loads that environment.
drwxr-xr-x root/root 0 2015-11-08 06:32 ./
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/
-rw-r--r-- root/root 321 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/DESCRIPTION
-rw-r--r-- root/root 75 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/INDEX
-rw-r--r-- root/root 132 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/NAMESPACE
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/R/
-rw-r--r-- root/root 470 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/R/geometry.R
-rw-r--r-- root/root 211 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/R/zzz.R
-rw-r--r-- root/root 10 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/TITLE
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/data/
-rw-r--r-- root/root 75 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/data/00Index
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/man/
-rw-r--r-- root/root 159 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/man/@DIMENVNAME@.Rd
-rw-r--r-- root/root 138 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/man/@PKGNAME@.Rd
-rw-r--r-- root/root 795 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Code/man/geometry.Rd
-rw-r--r-- root/root 923 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/DESCRIPTION
-rw-r--r-- root/root 274 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/INDEX
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/
-rw-r--r-- root/root 540 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/Rd.rds
-rw-r--r-- root/root 568 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/hsearch.rds
-rw-r--r-- root/root 340 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/links.rds
-rw-r--r-- root/root 400 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/nsInfo.rds
-rw-r--r-- root/root 1008 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/package.rds
-rw-r--r-- root/root 235 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/Meta/vignette.rds
-rw-r--r-- root/root 449 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/NAMESPACE
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/R/
-rw-r--r-- root/root 1056 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/R/makecdfenv
-rw-r--r-- root/root 65773 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/R/makecdfenv.rdb
-rw-r--r-- root/root 1019 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/R/makecdfenv.rdx
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/doc/
-rw-r--r-- root/root 1359 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/doc/index.html
-rw-r--r-- root/root 470 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/doc/makecdfenv.R
-rw-r--r-- root/root 7084 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/doc/makecdfenv.Rnw
-rw-r--r-- root/root 151689 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/doc/makecdfenv.pdf
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/extdata/
-rw-r--r-- root/root 3228759 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/extdata/Hu6800.CDF.gz
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/
-rw-r--r-- root/root 794 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/AnIndex
-rw-r--r-- root/root 294 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/aliases.rds
-rw-r--r-- root/root 18885 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/makecdfenv.rdb
-rw-r--r-- root/root 301 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/makecdfenv.rdx
-rw-r--r-- root/root 197 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/help/paths.rds
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/html/
-rw-r--r-- root/root 4221 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/html/00Index.html
-rw-r--r-- root/root 1319 2015-11-08 06:32 ./usr/lib/R/site-library/makecdfenv/html/R.css
drwxr-xr-x root/root 0 2015-11-08 06:33 ./usr/lib/R/site-library/makecdfenv/libs/
-rw-r--r-- root/root 9576 2015-11-08 06:33 ./usr/lib/R/site-library/makecdfenv/libs/makecdfenv.so
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/share/
drwxr-xr-x root/root 0 2015-11-08 06:32 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-11-08 06:33 ./usr/share/doc/r-bioc-makecdfenv/
-rw-r--r-- root/root 262 2014-07-29 07:43 ./usr/share/doc/r-bioc-makecdfenv/README.test
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Purging /«BUILDDIR»
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
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Build Architecture: armhf
Build-Space: 10424
Build-Time: 61
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 536
Job: r-bioc-makecdfenv_1.46.0-1
Machine Architecture: armhf
Package: r-bioc-makecdfenv
Package-Time: 659
Source-Version: 1.46.0-1
Space: 10424
Status: successful
Version: 1.46.0-1
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Finished at 20151108-0633
Build needed 00:10:59, 10424k disc space