r-bioc-genomicalignments →
1.38.2-1 →
armhf → 2024-01-28 23:16:29
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-genomicalignments 1.38.2-1 (armhf) Sun, 28 Jan 2024 23:13:28 +0000 |
+==============================================================================+
Package: r-bioc-genomicalignments
Version: 1.38.2-1
Source Version: 1.38.2-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-e95bce25-a9fc-45b7-834a-0bf05b0070d1' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-Tn3Hgj/resolver-mqwMcD' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
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Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-genomicalignments' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2276 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.2-1 (dsc) [2416 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.2-1 (tar) [2266 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.2-1 (diff) [7556 B]
Fetched 2276 kB in 0s (6912 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-Tn3Hgj/r-bioc-genomicalignments-1.38.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-Tn3Hgj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biostrings, r-bioc-rsamtools, r-bioc-biocparallel, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biostrings, r-bioc-rsamtools, r-bioc-biocparallel, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [832 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [864 B]
Fetched 2305 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.83-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.83-doc libboost-atomic1.83-dev
libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
libboost-contract1.83-dev libboost-coroutine1.83-dev
libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats
r-cran-rmarkdown r-cran-r.utils r-bioc-rtracklayer r-bioc-gviz
r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-bioc-keggrest
r-cran-digest r-bioc-sparsematrixstats r-cran-testthat r-bioc-graph
r-cran-jsonlite r-bioc-rhdf5 r-cran-rstudioapi r-cran-shiny r-cran-rmpi
r-cran-rlecuyer
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-bench r-cran-brio
r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc r-cran-ggplot2
r-cran-glue r-cran-knitr r-cran-lobstr r-cran-mockery r-cran-progress
r-cran-rmarkdown r-cran-scales r-cran-rcpp r-cran-testthat r-cran-tibble
r-cran-vctrs r-cran-withr r-cran-testit r-cran-survival r-cran-base64enc
r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-xml
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.83-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow
sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
0 upgraded, 203 newly installed, 0 to remove and 3 not upgraded.
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Get:62 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.5.0-2+rpi1 [377 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.3.0-2 [2152 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [189 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [40.8 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.1 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20240113-1 [289 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-3 [337 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b2 [23.5 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.4 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [15.0 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.4 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2207-1 [765 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.5 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.9 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1+b1 [12.1 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10+b1 [55.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libboost1.83-dev armhf 1.83.0-2 [10.6 MB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libboost-dev armhf 1.83.0.2 [3552 B]
Get:171 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.84.0-1 [5912 B]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.7-1 [219 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.36.0-1 [1337 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.36.0-1 [2249 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.42.0-1 [620 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.14+dfsg-1 [787 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.38.5+dfsg-1 [3848 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.70.1-1 [14.2 MB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-5-1 [3703 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.2.0-1 [468 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [511 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsearray armhf 1.2.3+dfsg-1 [1172 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.54.1+dfsg-1 [1827 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.4.0+dfsg-1 [1190 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rsamtools armhf 2.18.0+dfsg-1 [3497 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
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Unpacking m4 (1.4.19-4) ...
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Unpacking autoconf (2.71-3) ...
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Unpacking autotools-dev (20220109.1) ...
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Unpacking autopoint (0.21-14) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libdebhelper-perl (13.11.10) ...
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invoke-rc.d: could not determine current runlevel
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Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.10) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-matrixstats (1.2.0-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-bioc-matrixgenerics (1.14.0-1) ...
Setting up libmoose-perl:armhf (2.2207-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Setting up r-bioc-biobase (2.62.0-1) ...
Setting up r-cran-cpp11 (0.4.7-1) ...
Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-5-1) ...
Setting up r-bioc-iranges (2.36.0-1) ...
Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.36.0-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (2.4.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.38.5+dfsg-1) ...
Setting up r-bioc-xvector (0.42.0-1) ...
Setting up dh-r (20231212) ...
Setting up r-bioc-sparsearray (1.2.3+dfsg-1) ...
Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.70.1-1) ...
Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-13+rpi1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.2+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-13+rpi1 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
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Format: 3.0 (quilt)
Source: r-bioc-genomicalignments
Binary: r-bioc-genomicalignments
Architecture: any
Version: 1.38.2-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>, Charles Plessy <plessy@debian.org>
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biostrings, r-bioc-rsamtools, r-bioc-biocparallel
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gpgv: Signature made Thu Jan 25 16:02:39 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.38.2-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-genomicalignments in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-genomicalignments_1.38.2.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genomicalignments_1.38.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying disable-testing-pasillaBamSubset.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-e95bce25-a9fc-45b7-834a-0bf05b0070d1
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-genomicalignments
dpkg-buildpackage: info: source version 1.38.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-genomicalignments/ -a -O--buildsystem=R
I: R Package: GenomicAlignments Version: 1.38.2
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 25 Jan 2024 16:59:31 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Jan 2024 16:59:31 +0100'"
* installing *source* package ‘GenomicAlignments’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 13.2.0-9+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cigar_utils.c -o cigar_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library/00LOCK-r-bioc-genomicalignments-1.38.2/00new/GenomicAlignments/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicAlignments)
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.23.9)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.13.1)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.9.13)
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.55.7)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2)
I: Using r-bioc-shortread for Suggests:ShortRead
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14
W: Cannot find a debian package for Suggests:pasillaBamSubset
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-edger for Suggests:edgeR
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-genomicranges for Imports:GenomicRanges
I: Using r-bioc-biostrings for Imports:Biostrings
I: Using r-bioc-rsamtools for Imports:Rsamtools
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-genomicalignments as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genomicalignments-dbgsym' in '../r-bioc-genomicalignments-dbgsym_1.38.2-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-genomicalignments' in '../r-bioc-genomicalignments_1.38.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-genomicalignments_1.38.2-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-genomicalignments_1.38.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-28T23:16:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-genomicalignments_1.38.2-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Thu, 25 Jan 2024 16:59:31 +0100
Source: r-bioc-genomicalignments
Binary: r-bioc-genomicalignments r-bioc-genomicalignments-dbgsym
Architecture: armhf
Version: 1.38.2-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-genomicalignments - BioConductor representation and manipulation of short genomic ali
Changes:
r-bioc-genomicalignments (1.38.2-1) unstable; urgency=medium
.
* New upstream version
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Files:
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6091c67e19dc2e150812728baea1947b 11164 gnu-r optional r-bioc-genomicalignments_1.38.2-1_armhf.buildinfo
fb5c627a01c418c61d22ed814e5eae10 2139940 gnu-r optional r-bioc-genomicalignments_1.38.2-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-genomicalignments
Binary: r-bioc-genomicalignments r-bioc-genomicalignments-dbgsym
Architecture: armhf
Version: 1.38.2-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 28 Jan 2024 23:16:25 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-6),
bsdutils (= 1:2.39.3-6),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20230311),
coreutils (= 9.4-3),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-13+rpi1),
cpp-13 (= 13.2.0-9+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.83),
debhelper (= 13.11.10),
debianutils (= 5.16),
dh-autoreconf (= 20),
dh-r (= 20231212),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.2+rpi1),
dpkg-dev (= 1.22.2+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-9+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-9+rpi1),
gcc-13-base (= 13.2.0-9+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gfortran (= 4:13.2.0-1+rpi1),
gfortran-13 (= 13.2.0-9+rpi1),
grep (= 3.11-4),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu2),
icu-devtools (= 72.1-4),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-6),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-9+rpi1),
libatomic1 (= 13.2.0-9+rpi1),
libattr1 (= 1:2.5.1-5),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b2),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-6),
libboost-dev (= 1.83.0.2),
libboost1.83-dev (= 1.83.0-2),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.8-1),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.37-13+rpi1),
libc-dev-bin (= 2.37-13+rpi1),
libc6 (= 2.37-13+rpi1),
libc6-dev (= 2.37-13+rpi1),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.4-1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-9+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b2),
libclone-perl (= 0.46-1+b1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-4),
libcrypt1 (= 1:4.4.36-4),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.5.0-2+rpi1),
libcurl4 (= 8.5.0-2+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-3),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
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libdeflate0 (= 1.18-1),
libdevel-callchecker-perl (= 0.008-2+b1),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0500-1),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.22.2+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-2),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-13+rpi1),
libgcc-13-dev (= 13.2.0-9+rpi1),
libgcc-s1 (= 13.2.0-9+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran-13-dev (= 13.2.0-9+rpi1),
libgfortran5 (= 13.2.0-9+rpi1),
libglib2.0-0 (= 2.78.3-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.3-1),
libgomp1 (= 13.2.0-9+rpi1),
libgpg-error0 (= 1.47-3),
libgraphite2-3 (= 1.3.14-2),
libgssapi-krb5-2 (= 1.20.1-5),
libharfbuzz0b (= 8.3.0-2),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.06-1),
libhttp-message-perl (= 6.45-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-4),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1+b1),
liblerc4 (= 4.0.0+ds-4),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.5-0.3),
liblzma5 (= 5.4.5-0.3),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-2),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2207-1),
libmount1 (= 2.39.3-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20240113-1),
libncurses6 (= 6.4+20240113-1),
libncursesw6 (= 6.4+20240113-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.58.0-1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libp11-kit0 (= 0.25.3-4),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b2),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpango-1.0-0 (= 1.51.0+ds-4),
libpangocairo-1.0-0 (= 1.51.0+ds-4),
libpangoft2-1.0-0 (= 1.51.0+ds-4),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b2),
libparams-util-perl (= 1.102-2+b2),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.38 (= 5.38.2-3),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
libpng-dev (= 1.6.40-3),
libpng16-16 (= 1.6.40-3),
libpsl5 (= 0.21.2-1+b1),
libreadline-dev (= 8.2-3),
libreadline8 (= 8.2-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-4),
libsasl2-modules-db (= 2.1.28+dfsg1-4),
libseccomp2 (= 2.5.4-2+rpi1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.3-6),
libssh2-1 (= 1.11.0-4),
libssl3 (= 3.1.4-2),
libstdc++-13-dev (= 13.2.0-9+rpi1),
libstdc++6 (= 13.2.0-9+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3+b1),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1+b1),
libsub-override-perl (= 0.10-1),
libswitch-perl (= 2.17-3),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libtext-glob-perl (= 0.11-3),
libthai-data (= 0.1.29-2),
libthai0 (= 0.1.29-2),
libtiff6 (= 4.5.1+git230720-3),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20240113-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 13.2.0-9+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
libuuid1 (= 2.39.3-6),
libvariable-magic-perl (= 0.63-1+b2),
libwebp7 (= 1.3.2-0.3),
libwww-curl-perl (= 4.17-10+b1),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1+b1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-3),
mawk (= 1.3.4.20231126-1),
ncurses-base (= 6.4+20240113-1),
ncurses-bin (= 6.4+20240113-1),
openssl (= 3.1.4-2),
patch (= 2.7.6-7),
perl (= 5.38.2-3),
perl-base (= 5.38.2-3),
perl-modules-5.38 (= 5.38.2-3),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.2-1),
r-base-dev (= 4.3.2-1),
r-bioc-biobase (= 2.62.0-1),
r-bioc-biocgenerics (= 0.48.1-2),
r-bioc-biocparallel (= 1.36.0-1),
r-bioc-biostrings (= 2.70.1-1),
r-bioc-delayedarray (= 0.28.0+dfsg-1),
r-bioc-genomeinfodb (= 1.38.5+dfsg-1),
r-bioc-genomeinfodbdata (= 1.2.11-2),
r-bioc-genomicranges (= 1.54.1+dfsg-1),
r-bioc-iranges (= 2.36.0-1),
r-bioc-matrixgenerics (= 1.14.0-1),
r-bioc-rhtslib (= 2.4.0+dfsg-1),
r-bioc-rsamtools (= 2.18.0+dfsg-1),
r-bioc-s4arrays (= 1.2.0+dfsg-1),
r-bioc-s4vectors (= 0.40.2+dfsg-1),
r-bioc-sparsearray (= 1.2.3+dfsg-1),
r-bioc-summarizedexperiment (= 1.32.0+dfsg-1),
r-bioc-xvector (= 0.42.0-1),
r-bioc-zlibbioc (= 1.48.0+dfsg-1),
r-cran-abind (= 1.4-5-2),
r-cran-bh (= 1.84.0-1),
r-cran-bitops (= 1.0-7-1),
r-cran-codetools (= 0.2-19-1),
r-cran-cpp11 (= 0.4.7-1),
r-cran-crayon (= 1.5.2-1),
r-cran-formatr (= 1.14-1),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.22-5-1),
r-cran-matrix (= 1.6-5-1),
r-cran-matrixstats (= 1.2.0-1),
r-cran-rcurl (= 1.98-1.14+dfsg-1),
r-cran-snow (= 1:0.4.4-2),
readline-common (= 8.2-3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-5),
tar (= 1.35+dfsg-3),
tzdata (= 2023d-1),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 38),
usrmerge (= 38),
util-linux (= 2.39.3-6),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.5-0.3),
zip (= 3.0-13),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1706198371"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-genomicalignments-dbgsym_1.38.2-1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 17848 bytes: control archive=548 bytes.
433 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-genomicalignments-dbgsym
Source: r-bioc-genomicalignments
Version: 1.38.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 43
Depends: r-bioc-genomicalignments (= 1.38.2-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-genomicalignments
Build-Ids: 8d7ef8049e63d1fe2bf9756f141a9a7a94d9f0ec
drwxr-xr-x root/root 0 2024-01-25 15:59 ./
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/debug/.build-id/8d/
-rw-r--r-- root/root 32976 2024-01-25 15:59 ./usr/lib/debug/.build-id/8d/7ef8049e63d1fe2bf9756f141a9a7a94d9f0ec.debug
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-25 15:59 ./usr/share/doc/r-bioc-genomicalignments-dbgsym -> r-bioc-genomicalignments
r-bioc-genomicalignments_1.38.2-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 2139940 bytes: control archive=2288 bytes.
1153 bytes, 16 lines control
4969 bytes, 50 lines md5sums
Package: r-bioc-genomicalignments
Version: 1.38.2-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2947
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel, libc6 (>= 2.4)
Suggests: r-bioc-shortread, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-deseq2, r-bioc-edger, r-cran-runit, r-bioc-biocstyle
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Description: BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and
manipulating short genomic alignments (typically obtained by aligning
short reads to a reference genome). This includes read counting,
computing the coverage, junction detection, and working with the
nucleotide content of the alignments.
drwxr-xr-x root/root 0 2024-01-25 15:59 ./
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/
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drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/
-rw-r--r-- root/root 940 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/CITATION
-rw-r--r-- root/root 2904 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
-rw-r--r-- root/root 2050 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/INDEX
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/Meta/
-rw-r--r-- root/root 2954 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
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-rw-r--r-- root/root 2411 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
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-rw-r--r-- root/root 5184 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/NAMESPACE
-rw-r--r-- root/root 11933 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/NEWS
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/R/
-rw-r--r-- root/root 1058 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
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-rw-r--r-- root/root 8077 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/
-rw-r--r-- root/root 1421 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
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-rw-r--r-- root/root 94645 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
-rw-r--r-- root/root 32023 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
-rw-r--r-- root/root 58627 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
-rw-r--r-- root/root 295837 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
-rw-r--r-- root/root 5195 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
-rw-r--r-- root/root 14414 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
-rw-r--r-- root/root 225017 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
-rw-r--r-- root/root 3526 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/index.html
-rw-r--r-- root/root 7678 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
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-rw-r--r-- root/root 228803 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/extdata/
-rw-r--r-- root/root 52098 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
-rw-r--r-- root/root 95007 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/
-rw-r--r-- root/root 15444 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/AnIndex
-rw-r--r-- root/root 234782 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
-rw-r--r-- root/root 712 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
-rw-r--r-- root/root 2459 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
-rw-r--r-- root/root 388 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/help/paths.rds
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/html/
-rw-r--r-- root/root 34932 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/html/00Index.html
-rw-r--r-- root/root 1844 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/html/R.css
drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/libs/
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drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/lib/R/site-library/GenomicAlignments/unitTests/
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drwxr-xr-x root/root 0 2024-01-25 15:59 ./usr/share/
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-rw-r--r-- root/root 1011 2024-01-25 15:59 ./usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
-rw-r--r-- root/root 5373 2024-01-25 15:59 ./usr/share/doc/r-bioc-genomicalignments/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 8504
Build-Time: 48
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 121
Job: r-bioc-genomicalignments_1.38.2-1
Machine Architecture: arm64
Package: r-bioc-genomicalignments
Package-Time: 178
Source-Version: 1.38.2-1
Space: 8504
Status: successful
Version: 1.38.2-1
--------------------------------------------------------------------------------
Finished at 2024-01-28T23:16:26Z
Build needed 00:02:58, 8504k disk space