r-bioc-genomicalignments →
1.38.1-1 →
armhf → 2024-01-19 05:09:26
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-genomicalignments 1.38.1-1 (armhf) Fri, 19 Jan 2024 04:55:39 +0000 |
+==============================================================================+
Package: r-bioc-genomicalignments
Version: 1.38.1-1
Source Version: 1.38.1-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-c0a26637-3817-48cd-8fc0-226934efe8d9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 11s (2717 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-genomicalignments' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2276 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.1-1 (dsc) [2416 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.1-1 (tar) [2266 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-genomicalignments 1.38.1-1 (diff) [7552 B]
Fetched 2276 kB in 0s (8989 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-OOSxpd/r-bioc-genomicalignments-1.38.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-OOSxpd' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jTVF7x/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jTVF7x/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jTVF7x/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9047 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 45 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (83.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biostrings, r-bioc-rsamtools, r-bioc-biocparallel
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biostrings, r-bioc-rsamtools, r-bioc-biocparallel
dpkg-deb: building package 'sbuild-build-depends-r-bioc-genomicalignments-dummy' in '/<<BUILDDIR>>/resolver-jTVF7x/apt_archive/sbuild-build-depends-r-bioc-genomicalignments-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genomicalignments-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Sources [602 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ Packages [678 B]
Fetched 2613 B in 0s (14.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-genomicalignments build dependencies (apt-based resolver)
------------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates cpp-13 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-dejavu-mono g++-13 gcc-13 gcc-13-base gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblkid1 libboost-dev libboost1.83-dev libbrotli1 libbsd0 libbz2-dev
libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-13-dev
libgcc-s1 libgfortran-13-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev liblzma5 libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libsmartcols1 libssh2-1 libstdc++-13-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libubsan1 libuchardet0 liburi-perl libuuid1 libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib
r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow ucf
unzip util-linux util-linux-extra x11-common xauth xdg-utils xz-utils zip
zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
debtags dh-make postgresql-client-common gcc-13-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc
libcoarrays-dev groff liblapack-doc libboost-doc libboost1.83-doc
libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
libboost-context1.83-dev libboost-contract1.83-dev
libboost-coroutine1.83-dev libboost-date-time1.83-dev
libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
low-memory-monitor icu-doc liblzma-doc cryptsetup-bin ncurses-doc
libscalar-number-perl readline-doc libstdc++-13-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats
r-cran-rmarkdown r-cran-r.utils r-bioc-rtracklayer r-bioc-gviz
r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-bioc-keggrest
r-cran-digest r-bioc-sparsematrixstats r-cran-testthat r-bioc-graph
r-cran-jsonlite r-bioc-rhdf5 r-cran-rstudioapi r-cran-shiny r-cran-rmpi
r-cran-rlecuyer dosfstools kbd util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
uuid-runtime libmail-sendmail-perl r-recommended r-doc-html r-cran-bench
r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc
r-cran-ggplot2 r-cran-glue r-cran-knitr r-cran-lobstr r-cran-mockery
r-cran-progress r-cran-rmarkdown r-cran-scales r-cran-rcpp r-cran-testthat
r-cran-tibble r-cran-vctrs r-cran-withr r-cran-testit r-cran-survival
r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-xml
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.83-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow
sbuild-build-depends-r-bioc-genomicalignments-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-13 g++-13 gcc-13 gcc-13-base libasan8 libatomic1 libblkid1
libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 liblzma5 libmount1 libsmartcols1
libstdc++-13-dev libstdc++6 libubsan1 libuuid1 mount util-linux
util-linux-extra xz-utils zlib1g
24 upgraded, 202 newly installed, 0 to remove and 21 not upgraded.
Need to get 199 MB of archives.
After this operation, 516 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jTVF7x/apt_archive ./ sbuild-build-depends-r-bioc-genomicalignments-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-6 [87.1 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-6 [102 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.3-6 [135 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-6 [1113 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-6 [134 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 13.2.0-9+rpi1 [35.4 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-9+rpi1 [104 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-9+rpi1 [41.7 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 13.2.0-9+rpi1 [8448 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 13.2.0-9+rpi1 [2391 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 13.2.0-9+rpi1 [964 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 13.2.0-9+rpi1 [578 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf g++-13 armhf 13.2.0-9+rpi1 [8138 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libstdc++-13-dev armhf 13.2.0-9+rpi1 [2209 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libgcc-13-dev armhf 13.2.0-9+rpi1 [763 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-9+rpi1 [14.7 MB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf cpp-13 armhf 13.2.0-9+rpi1 [7372 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 13.2.0-9+rpi1 [36.2 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-6 [145 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.3 [227 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-6 [168 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-6 [28.3 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.3 [499 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:63 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-3 [259 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.5.0-2+rpi1 [377 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231209-1 [80.5 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231209-1 [290 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-3 [337 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libboost1.83-dev armhf 1.83.0-2 [10.6 MB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libboost-dev armhf 1.83.0.2 [3552 B]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.84.0-1 [5912 B]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.7-1 [219 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.36.0-1 [1337 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.36.0-1 [2249 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.42.0-1 [620 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.13+dfsg-2 [787 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.38.5+dfsg-1 [3848 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.70.1-1 [14.2 MB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-5-1 [3703 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.2.0-1 [468 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [511 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsearray armhf 1.2.3+dfsg-1 [1172 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.54.1+dfsg-1 [1827 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.4.0+dfsg-1 [1190 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rsamtools armhf 2.18.0+dfsg-1 [3497 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 199 MB in 22s (9114 kB/s)
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../bsdutils_1%3a2.39.3-6_armhf.deb ...
Unpacking bsdutils (1:2.39.3-6) over (1:2.39.3-2) ...
Setting up bsdutils (1:2.39.3-6) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libsmartcols1_2.39.3-6_armhf.deb ...
Unpacking libsmartcols1:armhf (2.39.3-6) over (2.39.3-2) ...
Setting up libsmartcols1:armhf (2.39.3-6) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../util-linux-extra_2.39.3-6_armhf.deb ...
Unpacking util-linux-extra (2.39.3-6) over (2.39.3-2) ...
Preparing to unpack .../util-linux_2.39.3-6_armhf.deb ...
Unpacking util-linux (2.39.3-6) over (2.39.3-2) ...
Setting up util-linux (2.39.3-6) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../mount_2.39.3-6_armhf.deb ...
Unpacking mount (2.39.3-6) over (2.39.3-2) ...
Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3_armhf.deb ...
Unpacking zlib1g:armhf (1:1.3.dfsg-3) over (1:1.2.13.dfsg-3) ...
Setting up zlib1g:armhf (1:1.3.dfsg-3) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libcc1-0_13.2.0-9+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../libgomp1_13.2.0-9+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../gcc-13-base_13.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-13-base:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Setting up gcc-13-base:armhf (13.2.0-9+rpi1) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libatomic1_13.2.0-9+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Setting up libatomic1:armhf (13.2.0-9+rpi1) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libasan8_13.2.0-9+rpi1_armhf.deb ...
Unpacking libasan8:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../libubsan1_13.2.0-9+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../libstdc++6_13.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Setting up libstdc++6:armhf (13.2.0-9+rpi1) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../0-g++-13_13.2.0-9+rpi1_armhf.deb ...
Unpacking g++-13 (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../1-libstdc++-13-dev_13.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++-13-dev:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../2-libgcc-13-dev_13.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc-13-dev:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../3-gcc-13_13.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-13 (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../4-cpp-13_13.2.0-9+rpi1_armhf.deb ...
Unpacking cpp-13 (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Preparing to unpack .../5-libgcc-s1_13.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (13.2.0-9+rpi1) over (13.2.0-7+rpi1) ...
Setting up libgcc-s1:armhf (13.2.0-9+rpi1) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libblkid1_2.39.3-6_armhf.deb ...
Unpacking libblkid1:armhf (2.39.3-6) over (2.39.3-2) ...
Setting up libblkid1:armhf (2.39.3-6) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../liblzma5_5.4.5-0.3_armhf.deb ...
Unpacking liblzma5:armhf (5.4.5-0.3) over (5.4.5-0.1) ...
Setting up liblzma5:armhf (5.4.5-0.3) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libmount1_2.39.3-6_armhf.deb ...
Unpacking libmount1:armhf (2.39.3-6) over (2.39.3-2) ...
Setting up libmount1:armhf (2.39.3-6) ...
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../libuuid1_2.39.3-6_armhf.deb ...
Unpacking libuuid1:armhf (2.39.3-6) over (2.39.3-2) ...
Setting up libuuid1:armhf (2.39.3-6) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.8-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.8-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../001-groff-base_1.23.0-3_armhf.deb ...
Unpacking groff-base (1.23.0-3) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../002-bsdextrautils_2.39.3-6_armhf.deb ...
Unpacking bsdextrautils (2.39.3-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.12.0-3_armhf.deb ...
Unpacking man-db (2.12.0-3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.1.4-2_armhf.deb ...
Unpacking openssl (3.1.4-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20230311_all.deb ...
Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../007-libmagic-mgc_1%3a5.45-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../008-libmagic1_1%3a5.45-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.45-2) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.45-2_armhf.deb ...
Unpacking file (1:5.45-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../010-gettext-base_0.21-14_armhf.deb ...
Unpacking gettext-base (0.21-14) ...
Selecting previously unselected package ucf.
Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
Preparing to unpack .../012-xz-utils_5.4.5-0.3_armhf.deb ...
Unpacking xz-utils (5.4.5-0.3) over (5.4.5-0.1) ...
Selecting previously unselected package m4.
Preparing to unpack .../013-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../014-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../017-autopoint_0.21-14_all.deb ...
Unpacking autopoint (0.21-14) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../018-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../019-libdebhelper-perl_13.11.9_all.deb ...
Unpacking libdebhelper-perl (13.11.9) ...
Selecting previously unselected package libtool.
Preparing to unpack .../020-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../021-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../023-libsub-override-perl_0.10-1_all.deb ...
Unpacking libsub-override-perl (0.10-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../025-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../026-libelf1_0.188-2.1+rpi1_armhf.deb ...
Unpacking libelf1:armhf (0.188-2.1+rpi1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../027-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../028-libicu72_72.1-4_armhf.deb ...
Unpacking libicu72:armhf (72.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../029-libxml2_2.9.14+dfsg-1.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../030-gettext_0.21-14_armhf.deb ...
Unpacking gettext (0.21-14) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../033-debhelper_13.11.9_all.deb ...
Unpacking debhelper (13.11.9) ...
Selecting previously unselected package zip.
Preparing to unpack .../034-zip_3.0-13_armhf.deb ...
Unpacking zip (3.0-13) ...
Selecting previously unselected package unzip.
Preparing to unpack .../035-unzip_6.0-28_armhf.deb ...
Unpacking unzip (6.0-28) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../036-libpaper1_1.1.29_armhf.deb ...
Unpacking libpaper1:armhf (1.1.29) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../037-libpaper-utils_1.1.29_armhf.deb ...
Unpacking libpaper-utils (1.1.29) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../038-xdg-utils_1.1.3-4.1_all.deb ...
Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../039-libblas3_3.11.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.11.0-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../040-libexpat1_2.5.0-2_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../041-libbrotli1_1.1.0-2_armhf.deb ...
Unpacking libbrotli1:armhf (1.1.0-2) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../042-libpng16-16_1.6.40-3_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.40-3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../043-libfreetype6_2.13.2+dfsg-1_armhf.deb ...
Unpacking libfreetype6:armhf (2.13.2+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../044-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../045-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../046-fontconfig-config_2.14.2-6_armhf.deb ...
Unpacking fontconfig-config (2.14.2-6) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../047-libfontconfig1_2.14.2-6_armhf.deb ...
Unpacking libfontconfig1:armhf (2.14.2-6) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../048-libpixman-1-0_0.42.2-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.42.2-1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../049-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../050-libbsd0_0.11.8-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../052-libxcb1_1.15-1_armhf.deb ...
Unpacking libxcb1:armhf (1.15-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../053-libx11-data_2%3a1.8.7-1_all.deb ...
Unpacking libx11-data (2:1.8.7-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../054-libx11-6_2%3a1.8.7-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.8.7-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../055-libxcb-render0_1.15-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.15-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../056-libxcb-shm0_1.15-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.15-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../057-libxext6_2%3a1.3.4-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.4-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../059-libcairo2_1.18.0-1_armhf.deb ...
Unpacking libcairo2:armhf (1.18.0-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../060-libnghttp2-14_1.58.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.58.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../061-libpsl5_0.21.2-1+b1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.2-1+b1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../062-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../063-libssh2-1_1.11.0-4_armhf.deb ...
Unpacking libssh2-1:armhf (1.11.0-4) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../064-libcurl4_8.5.0-2+rpi1_armhf.deb ...
Unpacking libcurl4:armhf (8.5.0-2+rpi1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../065-libglib2.0-0_2.78.3-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.78.3-1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../066-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../067-libgfortran5_13.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (13.2.0-9+rpi1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../068-liblapack3_3.11.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.11.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../069-fontconfig_2.14.2-6_armhf.deb ...
Unpacking fontconfig (2.14.2-6) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../070-libfribidi0_1.0.13-3_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.13-3) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../071-libgraphite2-3_1.3.14-2_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-2) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../072-libharfbuzz0b_8.0.1-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (8.0.1-1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../074-libdatrie1_0.2.13-3_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.13-3) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../075-libthai0_0.1.29-2_armhf.deb ...
Unpacking libthai0:armhf (0.1.29-2) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../076-libpango-1.0-0_1.51.0+ds-3_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.51.0+ds-3) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../077-libpangoft2-1.0-0_1.51.0+ds-3_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../078-libpangocairo-1.0-0_1.51.0+ds-3_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../079-libtcl8.6_8.6.13+dfsg-2_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.13+dfsg-2) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../080-libdeflate0_1.18-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.18-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../081-libjbig0_2.1-6.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-6.1) ...
Selecting previously unselected package liblerc4:armhf.
Preparing to unpack .../082-liblerc4_4.0.0+ds-4_armhf.deb ...
Unpacking liblerc4:armhf (4.0.0+ds-4) ...
Selecting previously unselected package libsharpyuv0:armhf.
Preparing to unpack .../083-libsharpyuv0_1.3.2-0.3_armhf.deb ...
Unpacking libsharpyuv0:armhf (1.3.2-0.3) ...
Selecting previously unselected package libwebp7:armhf.
Preparing to unpack .../084-libwebp7_1.3.2-0.3_armhf.deb ...
Unpacking libwebp7:armhf (1.3.2-0.3) ...
Selecting previously unselected package libtiff6:armhf.
Preparing to unpack .../085-libtiff6_4.5.1+git230720-3_armhf.deb ...
Unpacking libtiff6:armhf (4.5.1+git230720-3) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../086-libxft2_2.3.6-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.6-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../087-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../088-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../089-libtk8.6_8.6.13-2_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.13-2) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../090-libice6_2%3a1.0.10-1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.10-1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../091-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../092-libxt6_1%3a1.2.1-1.1_armhf.deb ...
Unpacking libxt6:armhf (1:1.2.1-1.1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../093-r-base-core_4.3.2-1_armhf.deb ...
Unpacking r-base-core (4.3.2-1) ...
Selecting previously unselected package libgfortran-13-dev:armhf.
Preparing to unpack .../094-libgfortran-13-dev_13.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran-13-dev:armhf (13.2.0-9+rpi1) ...
Selecting previously unselected package gfortran-13.
Preparing to unpack .../095-gfortran-13_13.2.0-9+rpi1_armhf.deb ...
Unpacking gfortran-13 (13.2.0-9+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../096-gfortran_4%3a13.2.0-1+rpi1_armhf.deb ...
Unpacking gfortran (4:13.2.0-1+rpi1) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../097-libblas-dev_3.11.0-2_armhf.deb ...
Unpacking libblas-dev:armhf (3.11.0-2) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../098-liblapack-dev_3.11.0-2_armhf.deb ...
Unpacking liblapack-dev:armhf (3.11.0-2) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../099-libncurses6_6.4+20231209-1_armhf.deb ...
Unpacking libncurses6:armhf (6.4+20231209-1) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../100-libncurses-dev_6.4+20231209-1_armhf.deb ...
Unpacking libncurses-dev:armhf (6.4+20231209-1) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../101-libreadline-dev_8.2-3_armhf.deb ...
Unpacking libreadline-dev:armhf (8.2-3) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../102-libjpeg62-turbo-dev_1%3a2.1.5-2_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Selecting previously unselected package libjpeg-dev:armhf.
Preparing to unpack .../103-libjpeg-dev_1%3a2.1.5-2_armhf.deb ...
Unpacking libjpeg-dev:armhf (1:2.1.5-2) ...
Selecting previously unselected package libpcre2-16-0:armhf.
Preparing to unpack .../104-libpcre2-16-0_10.42-4_armhf.deb ...
Unpacking libpcre2-16-0:armhf (10.42-4) ...
Selecting previously unselected package libpcre2-32-0:armhf.
Preparing to unpack .../105-libpcre2-32-0_10.42-4_armhf.deb ...
Unpacking libpcre2-32-0:armhf (10.42-4) ...
Selecting previously unselected package libpcre2-posix3:armhf.
Preparing to unpack .../106-libpcre2-posix3_10.42-4_armhf.deb ...
Unpacking libpcre2-posix3:armhf (10.42-4) ...
Selecting previously unselected package libpcre2-dev:armhf.
Preparing to unpack .../107-libpcre2-dev_10.42-4_armhf.deb ...
Unpacking libpcre2-dev:armhf (10.42-4) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../109-libpng-dev_1.6.40-3_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.40-3) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../110-libbz2-dev_1.0.8-5+b2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-5+b2) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../111-liblzma-dev_5.4.5-0.3_armhf.deb ...
Unpacking liblzma-dev:armhf (5.4.5-0.3) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../112-icu-devtools_72.1-4_armhf.deb ...
Unpacking icu-devtools (72.1-4) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../113-libicu-dev_72.1-4_armhf.deb ...
Unpacking libicu-dev:armhf (72.1-4) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../114-libxmuu1_2%3a1.1.3-3_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.3-3) ...
Selecting previously unselected package xauth.
Preparing to unpack .../115-xauth_1%3a1.1.2-1_armhf.deb ...
Unpacking xauth (1:1.1.2-1) ...
Selecting previously unselected package libpkgconf3:armhf.
Preparing to unpack .../116-libpkgconf3_1.8.1-1_armhf.deb ...
Unpacking libpkgconf3:armhf (1.8.1-1) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../117-pkgconf-bin_1.8.1-1_armhf.deb ...
Unpacking pkgconf-bin (1.8.1-1) ...
Selecting previously unselected package pkgconf:armhf.
Preparing to unpack .../118-pkgconf_1.8.1-1_armhf.deb ...
Unpacking pkgconf:armhf (1.8.1-1) ...
Selecting previously unselected package pkg-config:armhf.
Preparing to unpack .../119-pkg-config_1.8.1-1_armhf.deb ...
Unpacking pkg-config:armhf (1.8.1-1) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../120-r-base-dev_4.3.2-1_all.deb ...
Unpacking r-base-dev (4.3.2-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../121-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../122-libswitch-perl_2.17-3_all.deb ...
Unpacking libswitch-perl (2.17-3) ...
Selecting previously unselected package libclone-perl:armhf.
Preparing to unpack .../123-libclone-perl_0.46-1_armhf.deb ...
Unpacking libclone-perl:armhf (0.46-1) ...
Selecting previously unselected package libencode-locale-perl.
Preparing to unpack .../124-libencode-locale-perl_1.05-3_all.deb ...
Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../125-libtimedate-perl_2.3300-2_all.deb ...
Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libhttp-date-perl.
Preparing to unpack .../126-libhttp-date-perl_6.06-1_all.deb ...
Unpacking libhttp-date-perl (6.06-1) ...
Selecting previously unselected package libio-html-perl.
Preparing to unpack .../127-libio-html-perl_1.004-3_all.deb ...
Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
Preparing to unpack .../128-liblwp-mediatypes-perl_6.04-2_all.deb ...
Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../129-liburi-perl_5.21-1_all.deb ...
Unpacking liburi-perl (5.21-1) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../130-libhttp-message-perl_6.45-1_all.deb ...
Unpacking libhttp-message-perl (6.45-1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../131-libparams-util-perl_1.102-2+b1_armhf.deb ...
Unpacking libparams-util-perl (1.102-2+b1) ...
Selecting previously unselected package libsub-install-perl.
Preparing to unpack .../132-libsub-install-perl_0.929-1_all.deb ...
Unpacking libsub-install-perl (0.929-1) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../133-libdata-optlist-perl_0.114-1_all.deb ...
Unpacking libdata-optlist-perl (0.114-1) ...
Selecting previously unselected package libb-hooks-op-check-perl:armhf.
Preparing to unpack .../134-libb-hooks-op-check-perl_0.22-2+b1_armhf.deb ...
Unpacking libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../135-libdynaloader-functions-perl_0.003-3_all.deb ...
Unpacking libdynaloader-functions-perl (0.003-3) ...
Selecting previously unselected package libdevel-callchecker-perl:armhf.
Preparing to unpack .../136-libdevel-callchecker-perl_0.008-2_armhf.deb ...
Unpacking libdevel-callchecker-perl:armhf (0.008-2) ...
Selecting previously unselected package libparams-classify-perl:armhf.
Preparing to unpack .../137-libparams-classify-perl_0.015-2+b1_armhf.deb ...
Unpacking libparams-classify-perl:armhf (0.015-2+b1) ...
Selecting previously unselected package libmodule-runtime-perl.
Preparing to unpack .../138-libmodule-runtime-perl_0.016-2_all.deb ...
Unpacking libmodule-runtime-perl (0.016-2) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../139-libtry-tiny-perl_0.31-2_all.deb ...
Unpacking libtry-tiny-perl (0.31-2) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../140-libmodule-implementation-perl_0.09-2_all.deb ...
Unpacking libmodule-implementation-perl (0.09-2) ...
Selecting previously unselected package libpackage-stash-perl.
Preparing to unpack .../141-libpackage-stash-perl_0.40-1_all.deb ...
Unpacking libpackage-stash-perl (0.40-1) ...
Selecting previously unselected package libclass-load-perl.
Preparing to unpack .../142-libclass-load-perl_0.25-2_all.deb ...
Unpacking libclass-load-perl (0.25-2) ...
Selecting previously unselected package libclass-load-xs-perl.
Preparing to unpack .../143-libclass-load-xs-perl_0.10-2+b1_armhf.deb ...
Unpacking libclass-load-xs-perl (0.10-2+b1) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../144-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
Selecting previously unselected package libdevel-globaldestruction-perl.
Preparing to unpack .../145-libdevel-globaldestruction-perl_0.14-4_all.deb ...
Unpacking libdevel-globaldestruction-perl (0.14-4) ...
Selecting previously unselected package libalgorithm-c3-perl.
Preparing to unpack .../146-libalgorithm-c3-perl_0.11-2_all.deb ...
Unpacking libalgorithm-c3-perl (0.11-2) ...
Selecting previously unselected package libclass-c3-perl.
Preparing to unpack .../147-libclass-c3-perl_0.35-2_all.deb ...
Unpacking libclass-c3-perl (0.35-2) ...
Selecting previously unselected package libmro-compat-perl.
Preparing to unpack .../148-libmro-compat-perl_0.15-2_all.deb ...
Unpacking libmro-compat-perl (0.15-2) ...
Selecting previously unselected package libdevel-overloadinfo-perl.
Preparing to unpack .../149-libdevel-overloadinfo-perl_0.007-1_all.deb ...
Unpacking libdevel-overloadinfo-perl (0.007-1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../150-libdevel-stacktrace-perl_2.0400-2_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0400-2) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../151-libsub-exporter-perl_0.990-1_all.deb ...
Unpacking libsub-exporter-perl (0.990-1) ...
Selecting previously unselected package libeval-closure-perl.
Preparing to unpack .../152-libeval-closure-perl_0.14-3_all.deb ...
Unpacking libeval-closure-perl (0.14-3) ...
Selecting previously unselected package libdist-checkconflicts-perl.
Preparing to unpack .../153-libdist-checkconflicts-perl_0.11-2_all.deb ...
Unpacking libdist-checkconflicts-perl (0.11-2) ...
Selecting previously unselected package libmodule-runtime-conflicts-perl.
Preparing to unpack .../154-libmodule-runtime-conflicts-perl_0.003-2_all.deb ...
Unpacking libmodule-runtime-conflicts-perl (0.003-2) ...
Selecting previously unselected package libpackage-deprecationmanager-perl.
Preparing to unpack .../155-libpackage-deprecationmanager-perl_0.18-1_all.deb ...
Unpacking libpackage-deprecationmanager-perl (0.18-1) ...
Selecting previously unselected package libpackage-stash-xs-perl:armhf.
Preparing to unpack .../156-libpackage-stash-xs-perl_0.30-1+b1_armhf.deb ...
Unpacking libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Selecting previously unselected package libmoose-perl:armhf.
Preparing to unpack .../157-libmoose-perl_2.2206-1_armhf.deb ...
Unpacking libmoose-perl:armhf (2.2206-1) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../158-libvariable-magic-perl_0.63-1+b1_armhf.deb ...
Unpacking libvariable-magic-perl (0.63-1+b1) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../159-libb-hooks-endofscope-perl_0.26-1_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.26-1) ...
Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../160-libsub-identify-perl_0.14-3_armhf.deb ...
Unpacking libsub-identify-perl (0.14-3) ...
Selecting previously unselected package libsub-name-perl:armhf.
Preparing to unpack .../161-libsub-name-perl_0.27-1_armhf.deb ...
Unpacking libsub-name-perl:armhf (0.27-1) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../162-libnamespace-clean-perl_0.27-2_all.deb ...
Unpacking libnamespace-clean-perl (0.27-2) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../163-libcurl3-gnutls_8.5.0-2+rpi1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Selecting previously unselected package libwww-curl-perl:armhf.
Preparing to unpack .../164-libwww-curl-perl_4.17-10_armhf.deb ...
Unpacking libwww-curl-perl:armhf (4.17-10) ...
Selecting previously unselected package libwww-curl-simple-perl.
Preparing to unpack .../165-libwww-curl-simple-perl_0.100191-3_all.deb ...
Unpacking libwww-curl-simple-perl (0.100191-3) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../166-dh-r_20231212_all.deb ...
Unpacking dh-r (20231212) ...
Selecting previously unselected package libboost1.83-dev:armhf.
Preparing to unpack .../167-libboost1.83-dev_1.83.0-2_armhf.deb ...
Unpacking libboost1.83-dev:armhf (1.83.0-2) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../168-libboost-dev_1.83.0.2_armhf.deb ...
Unpacking libboost-dev:armhf (1.83.0.2) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../169-r-bioc-biocgenerics_0.48.1-2_all.deb ...
Unpacking r-bioc-biocgenerics (0.48.1-2) ...
Selecting previously unselected package r-bioc-biobase.
Preparing to unpack .../170-r-bioc-biobase_2.62.0-1_armhf.deb ...
Unpacking r-bioc-biobase (2.62.0-1) ...
Selecting previously unselected package r-cran-formatr.
Preparing to unpack .../171-r-cran-formatr_1.14-1_all.deb ...
Unpacking r-cran-formatr (1.14-1) ...
Selecting previously unselected package r-cran-lambda.r.
Preparing to unpack .../172-r-cran-lambda.r_1.2.4-2_all.deb ...
Unpacking r-cran-lambda.r (1.2.4-2) ...
Selecting previously unselected package r-cran-futile.options.
Preparing to unpack .../173-r-cran-futile.options_1.0.1-3_all.deb ...
Unpacking r-cran-futile.options (1.0.1-3) ...
Selecting previously unselected package r-cran-futile.logger.
Preparing to unpack .../174-r-cran-futile.logger_1.4.3-4_all.deb ...
Unpacking r-cran-futile.logger (1.4.3-4) ...
Selecting previously unselected package r-cran-snow.
Preparing to unpack .../175-r-cran-snow_1%3a0.4.4-2_all.deb ...
Unpacking r-cran-snow (1:0.4.4-2) ...
Selecting previously unselected package r-cran-codetools.
Preparing to unpack .../176-r-cran-codetools_0.2-19-1_all.deb ...
Unpacking r-cran-codetools (0.2-19-1) ...
Selecting previously unselected package r-cran-bh.
Preparing to unpack .../177-r-cran-bh_1.84.0-1_all.deb ...
Unpacking r-cran-bh (1.84.0-1) ...
Selecting previously unselected package r-cran-cpp11.
Preparing to unpack .../178-r-cran-cpp11_0.4.7-1_all.deb ...
Unpacking r-cran-cpp11 (0.4.7-1) ...
Selecting previously unselected package r-bioc-biocparallel.
Preparing to unpack .../179-r-bioc-biocparallel_1.36.0-1_armhf.deb ...
Unpacking r-bioc-biocparallel (1.36.0-1) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../180-r-bioc-s4vectors_0.40.2+dfsg-1_armhf.deb ...
Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../181-r-bioc-iranges_2.36.0-1_armhf.deb ...
Unpacking r-bioc-iranges (2.36.0-1) ...
Selecting previously unselected package r-bioc-zlibbioc.
Preparing to unpack .../182-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../183-r-bioc-xvector_0.42.0-1_armhf.deb ...
Unpacking r-bioc-xvector (0.42.0-1) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../184-r-cran-bitops_1.0-7-1_armhf.deb ...
Unpacking r-cran-bitops (1.0-7-1) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../185-r-cran-rcurl_1.98-1.13+dfsg-2_armhf.deb ...
Unpacking r-cran-rcurl (1.98-1.13+dfsg-2) ...
Selecting previously unselected package r-bioc-genomeinfodbdata.
Preparing to unpack .../186-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../187-r-bioc-genomeinfodb_1.38.5+dfsg-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.38.5+dfsg-1) ...
Selecting previously unselected package r-cran-crayon.
Preparing to unpack .../188-r-cran-crayon_1.5.2-1_all.deb ...
Unpacking r-cran-crayon (1.5.2-1) ...
Selecting previously unselected package r-bioc-biostrings.
Preparing to unpack .../189-r-bioc-biostrings_2.70.1-1_armhf.deb ...
Unpacking r-bioc-biostrings (2.70.1-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../190-r-cran-lattice_0.22-5-1_armhf.deb ...
Unpacking r-cran-lattice (0.22-5-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../191-r-cran-matrix_1.6-5-1_armhf.deb ...
Unpacking r-cran-matrix (1.6-5-1) ...
Selecting previously unselected package r-cran-matrixstats.
Preparing to unpack .../192-r-cran-matrixstats_1.2.0-1_armhf.deb ...
Unpacking r-cran-matrixstats (1.2.0-1) ...
Selecting previously unselected package r-bioc-matrixgenerics.
Preparing to unpack .../193-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
Selecting previously unselected package r-cran-abind.
Preparing to unpack .../194-r-cran-abind_1.4-5-2_all.deb ...
Unpacking r-cran-abind (1.4-5-2) ...
Selecting previously unselected package r-bioc-s4arrays.
Preparing to unpack .../195-r-bioc-s4arrays_1.2.0+dfsg-1_armhf.deb ...
Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
Selecting previously unselected package r-bioc-sparsearray.
Preparing to unpack .../196-r-bioc-sparsearray_1.2.3+dfsg-1_armhf.deb ...
Unpacking r-bioc-sparsearray (1.2.3+dfsg-1) ...
Selecting previously unselected package r-bioc-delayedarray.
Preparing to unpack .../197-r-bioc-delayedarray_0.28.0+dfsg-1_armhf.deb ...
Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
Selecting previously unselected package r-bioc-genomicranges.
Preparing to unpack .../198-r-bioc-genomicranges_1.54.1+dfsg-1_armhf.deb ...
Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
Selecting previously unselected package r-bioc-rhtslib.
Preparing to unpack .../199-r-bioc-rhtslib_2.4.0+dfsg-1_armhf.deb ...
Unpacking r-bioc-rhtslib (2.4.0+dfsg-1) ...
Selecting previously unselected package r-bioc-rsamtools.
Preparing to unpack .../200-r-bioc-rsamtools_2.18.0+dfsg-1_armhf.deb ...
Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ...
Selecting previously unselected package r-bioc-summarizedexperiment.
Preparing to unpack .../201-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-genomicalignments-dummy.
Preparing to unpack .../202-sbuild-build-depends-r-bioc-genomicalignments-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-genomicalignments-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-2) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libsharpyuv0:armhf (1.3.2-0.3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-4) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up cpp-13 (13.2.0-9+rpi1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-3) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.3-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.9) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.45-2) ...
Setting up libgomp1:armhf (13.2.0-9+rpi1) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20231209-1) ...
Setting up xz-utils (5.4.5-0.3) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-3) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-14) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (13.2.0-9+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.5-0.3) ...
Setting up libubsan1:armhf (13.2.0-9+rpi1) ...
Setting up libsub-name-perl:armhf (0.27-1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up mount (2.39.3-6) ...
Setting up libtiff6:armhf (4.5.1+git230720-3) ...
Setting up libasan8:armhf (13.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-4) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.1.4-2) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (13.2.0-9+rpi1) ...
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up util-linux-extra (2.39.3-6) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231209-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-3) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-2) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libgcc-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.5.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libgfortran-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libstdc++-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libboost1.83-dev:armhf (1.83.0-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up gcc-13 (13.2.0-9+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libboost-dev:armhf (1.83.0.2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up g++-13 (13.2.0-9+rpi1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.9) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up gfortran-13 (13.2.0-9+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-matrixstats (1.2.0-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-bioc-matrixgenerics (1.14.0-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Setting up r-bioc-biobase (2.62.0-1) ...
Setting up r-cran-cpp11 (0.4.7-1) ...
Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-matrix (1.6-5-1) ...
Setting up r-bioc-iranges (2.36.0-1) ...
Setting up dh-r (20231212) ...
Setting up r-cran-rcurl (1.98-1.13+dfsg-2) ...
Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.36.0-1) ...
Setting up r-bioc-rhtslib (2.4.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.38.5+dfsg-1) ...
Setting up r-bioc-xvector (0.42.0-1) ...
Setting up r-bioc-sparsearray (1.2.3+dfsg-1) ...
Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.70.1-1) ...
Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-genomicalignments-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-r_20231212 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-9+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-6 libboost-dev_1.83.0.2 libboost1.83-dev_1.83.0-2 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-9+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.5.0-2+rpi1 libcurl4_8.5.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-3 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran-13-dev_13.2.0-9+rpi1 libgfortran5_13.2.0-9+rpi1 libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgraphite2-3_1.3.14-2 libgssapi-krb5-2_1.20.1-5 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.45-1 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-4 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20231209-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpango-1.0-0_1.51.0+ds-3 libpangocairo-1.0-0_1.51.0+ds-3 libpangoft2-1.0-0_1.51.0+ds-3 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-3 libpng16-16_1.6.40-3 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-3 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.10-1 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-3 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.3-6 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-bioc-biobase_2.62.0-1 r-bioc-biocgenerics_0.48.1-2 r-bioc-biocparallel_1.36.0-1 r-bioc-biostrings_2.70.1-1 r-bioc-delayedarray_0.28.0+dfsg-1 r-bioc-genomeinfodb_1.38.5+dfsg-1 r-bioc-genomeinfodbdata_1.2.11-2 r-bioc-genomicranges_1.54.1+dfsg-1 r-bioc-iranges_2.36.0-1 r-bioc-matrixgenerics_1.14.0-1 r-bioc-rhtslib_2.4.0+dfsg-1 r-bioc-rsamtools_2.18.0+dfsg-1 r-bioc-s4arrays_1.2.0+dfsg-1 r-bioc-s4vectors_0.40.2+dfsg-1 r-bioc-sparsearray_1.2.3+dfsg-1 r-bioc-summarizedexperiment_1.32.0+dfsg-1 r-bioc-xvector_0.42.0-1 r-bioc-zlibbioc_1.48.0+dfsg-1 r-cran-abind_1.4-5-2 r-cran-bh_1.84.0-1 r-cran-bitops_1.0-7-1 r-cran-codetools_0.2-19-1 r-cran-cpp11_0.4.7-1 r-cran-crayon_1.5.2-1 r-cran-formatr_1.14-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.22-5-1 r-cran-matrix_1.6-5-1 r-cran-matrixstats_1.2.0-1 r-cran-rcurl_1.98-1.13+dfsg-2 r-cran-snow_1:0.4.4-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genomicalignments-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.3 zip_3.0-13 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Wed Jan 17 10:11:00 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.38.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-genomicalignments in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-genomicalignments_1.38.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genomicalignments_1.38.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying disable-testing-pasillaBamSubset.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-c0a26637-3817-48cd-8fc0-226934efe8d9
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-genomicalignments
dpkg-buildpackage: info: source version 1.38.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-genomicalignments/ -a -O--buildsystem=R
I: R Package: GenomicAlignments Version: 1.38.1
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 17 Jan 2024 11:05:00 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 17 Jan 2024 11:05:00 +0100'"
* installing *source* package 'GenomicAlignments' ...
** using staged installation
** libs
using C compiler: 'gcc (Raspbian 13.2.0-9+rpi1) 13.2.0'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cigar_utils.c -o cigar_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library/00LOCK-r-bioc-genomicalignments-1.38.1/00new/GenomicAlignments/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicAlignments)
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.23.9)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.13.1)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.9.13)
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.55.7)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2)
I: Using r-bioc-shortread for Suggests:ShortRead
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14
W: Cannot find a debian package for Suggests:pasillaBamSubset
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-edger for Suggests:edgeR
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-genomicranges for Imports:GenomicRanges
I: Using r-bioc-biostrings for Imports:Biostrings
I: Using r-bioc-rsamtools for Imports:Rsamtools
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-genomicalignments as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genomicalignments-dbgsym' in '../r-bioc-genomicalignments-dbgsym_1.38.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-genomicalignments' in '../r-bioc-genomicalignments_1.38.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-genomicalignments_1.38.1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-genomicalignments_1.38.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-19T05:09:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-genomicalignments_1.38.1-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Wed, 17 Jan 2024 11:05:00 +0100
Source: r-bioc-genomicalignments
Binary: r-bioc-genomicalignments r-bioc-genomicalignments-dbgsym
Architecture: armhf
Version: 1.38.1-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-genomicalignments - BioConductor representation and manipulation of short genomic ali
Changes:
r-bioc-genomicalignments (1.38.1-1) unstable; urgency=medium
.
* New upstream version
Set upstream metadata fields: Archive.
Checksums-Sha1:
1f4610f68b50956b24d6639e55d5dee8b0ad0186 17856 r-bioc-genomicalignments-dbgsym_1.38.1-1_armhf.deb
2753ae7f4c36a8432356683f6ce9822e8a59d149 11081 r-bioc-genomicalignments_1.38.1-1_armhf.buildinfo
fc51639e8e19bd47bb7cc959a5a375969909c65e 2155708 r-bioc-genomicalignments_1.38.1-1_armhf.deb
Checksums-Sha256:
734a14c3e49d7d6cba0c437b272d0f3fa5952f85cfadc7735c475c57c245853c 17856 r-bioc-genomicalignments-dbgsym_1.38.1-1_armhf.deb
ff403ae4a679a6bfc7535d36c68fe770cd1b0b0147ce84e33c885312b113e8e4 11081 r-bioc-genomicalignments_1.38.1-1_armhf.buildinfo
b120240c66883a63d99c7e5a9525bb41c64eee3a1f562645624d7ae7a68af0d0 2155708 r-bioc-genomicalignments_1.38.1-1_armhf.deb
Files:
e04c8d015cc0fa6a7b053d0c8e05c9c8 17856 debug optional r-bioc-genomicalignments-dbgsym_1.38.1-1_armhf.deb
671aba64114a2724984e89aeb48e047b 11081 gnu-r optional r-bioc-genomicalignments_1.38.1-1_armhf.buildinfo
3fae560d9d65c4b160a234fb5a820df4 2155708 gnu-r optional r-bioc-genomicalignments_1.38.1-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-genomicalignments-dbgsym_1.38.1-1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 17856 bytes: control archive=548 bytes.
433 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-genomicalignments-dbgsym
Source: r-bioc-genomicalignments
Version: 1.38.1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 43
Depends: r-bioc-genomicalignments (= 1.38.1-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-genomicalignments
Build-Ids: 4e48f093e5e146469a39417bc5af830741a4a7d6
drwxr-xr-x root/root 0 2024-01-17 10:05 ./
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root 32976 2024-01-17 10:05 ./usr/lib/debug/.build-id/4e/48f093e5e146469a39417bc5af830741a4a7d6.debug
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/share/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-17 10:05 ./usr/share/doc/r-bioc-genomicalignments-dbgsym -> r-bioc-genomicalignments
r-bioc-genomicalignments_1.38.1-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 2155708 bytes: control archive=2288 bytes.
1153 bytes, 16 lines control
4969 bytes, 50 lines md5sums
Package: r-bioc-genomicalignments
Version: 1.38.1-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2960
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel, libc6 (>= 2.4)
Suggests: r-bioc-shortread, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-deseq2, r-bioc-edger, r-cran-runit, r-bioc-biocstyle
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Description: BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and
manipulating short genomic alignments (typically obtained by aligning
short reads to a reference genome). This includes read counting,
computing the coverage, junction detection, and working with the
nucleotide content of the alignments.
drwxr-xr-x root/root 0 2024-01-17 10:05 ./
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/
-rw-r--r-- root/root 940 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/CITATION
-rw-r--r-- root/root 2904 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
-rw-r--r-- root/root 2050 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/INDEX
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/
-rw-r--r-- root/root 2964 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
-rw-r--r-- root/root 132 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
-rw-r--r-- root/root 3106 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds
-rw-r--r-- root/root 2426 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
-rw-r--r-- root/root 1362 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds
-rw-r--r-- root/root 2162 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/package.rds
-rw-r--r-- root/root 544 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds
-rw-r--r-- root/root 5184 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/NAMESPACE
-rw-r--r-- root/root 11933 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/NEWS
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/R/
-rw-r--r-- root/root 1058 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
-rw-r--r-- root/root 1392803 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb
-rw-r--r-- root/root 8090 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/
-rw-r--r-- root/root 1421 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
-rw-r--r-- root/root 5654 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
-rw-r--r-- root/root 94703 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
-rw-r--r-- root/root 32023 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
-rw-r--r-- root/root 58627 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
-rw-r--r-- root/root 296001 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
-rw-r--r-- root/root 5195 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
-rw-r--r-- root/root 14414 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
-rw-r--r-- root/root 224953 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
-rw-r--r-- root/root 3526 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/index.html
-rw-r--r-- root/root 7678 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
-rw-r--r-- root/root 13595 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw
-rw-r--r-- root/root 228966 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/extdata/
-rw-r--r-- root/root 52098 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
-rw-r--r-- root/root 95007 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/
-rw-r--r-- root/root 15444 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/AnIndex
-rw-r--r-- root/root 235295 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
-rw-r--r-- root/root 725 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
-rw-r--r-- root/root 2472 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
-rw-r--r-- root/root 396 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/help/paths.rds
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/html/
-rw-r--r-- root/root 34932 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/html/00Index.html
-rw-r--r-- root/root 1844 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/html/R.css
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/libs/
-rw-r--r-- root/root 59004 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/
-rw-r--r-- root/root 1174 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
-rw-r--r-- root/root 5046 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
-rw-r--r-- root/root 4374 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
-rw-r--r-- root/root 6350 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
-rw-r--r-- root/root 9950 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
-rw-r--r-- root/root 1642 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R
-rw-r--r-- root/root 12261 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
-rw-r--r-- root/root 2249 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R
-rw-r--r-- root/root 579 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
-rw-r--r-- root/root 12560 2024-01-17 10:05 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/share/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-17 10:05 ./usr/share/doc/r-bioc-genomicalignments/
-rw-r--r-- root/root 997 2024-01-17 10:05 ./usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
-rw-r--r-- root/root 5373 2024-01-17 10:05 ./usr/share/doc/r-bioc-genomicalignments/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 8532
Build-Time: 159
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 624
Job: r-bioc-genomicalignments_1.38.1-1
Machine Architecture: armhf
Package: r-bioc-genomicalignments
Package-Time: 805
Source-Version: 1.38.1-1
Space: 8532
Status: successful
Version: 1.38.1-1
--------------------------------------------------------------------------------
Finished at 2024-01-19T05:09:04Z
Build needed 00:13:25, 8532k disk space