r-bioc-genomicalignments →
1.26.0-1 →
armhf → 2020-11-24 05:26:47
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| r-bioc-genomicalignments 1.26.0-1 (armhf) Tue, 24 Nov 2020 04:57:36 +0000 |
+==============================================================================+
Package: r-bioc-genomicalignments
Version: 1.26.0-1
Source Version: 1.26.0-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-68b64f95-8c42-43b0-a4f8-ee44155fc23d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-genomicalignments' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2326 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-genomicalignments 1.26.0-1 (dsc) [2529 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-genomicalignments 1.26.0-1 (tar) [2316 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-genomicalignments 1.26.0-1 (diff) [7252 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-d9SZdC/r-bioc-genomicalignments-1.26.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genomicalignments-d9SZdC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Vhjgis/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Vhjgis/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Vhjgis/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2442 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12762 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.15.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.15.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel
dpkg-deb: building package 'sbuild-build-depends-r-bioc-genomicalignments-dummy' in '/<<BUILDDIR>>/resolver-Vhjgis/apt_archive/sbuild-build-depends-r-bioc-genomicalignments-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genomicalignments-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Sources [634 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Vhjgis/apt_archive ./ Packages [717 B]
Fetched 2684 B in 1s (3238 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-genomicalignments build dependencies (apt-based resolver)
------------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcroco3 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges
r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh
r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger
r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix
r-cran-matrixstats r-cran-rcurl r-cran-snow ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
libboost-context1.71-dev libboost-contract1.71-dev
libboost-coroutine1.71-dev libboost-date-time1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
libboost-program-options1.71-dev libboost-python1.71-dev
libboost-random1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev icu-doc liblzma-doc
ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-foreach r-cran-bbmisc r-bioc-variantannotation
r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr
r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-biocstyle
r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq
r-bioc-edger r-bioc-delayedmatrixstats r-bioc-graph r-bioc-hdf5array
r-cran-jsonlite r-bioc-rhdf5 r-cran-rmarkdown r-cran-testthat
r-cran-rstudioapi r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml
r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl
libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libclone-perl libdevel-partialdump-perl libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools
r-cran-rmpi r-bioc-genefilter r-cran-digest r-bioc-annotate r-cran-testthat
r-bioc-shortread r-cran-withr r-cran-mockery r-cran-testit r-cran-codetools
r-cran-survival libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcroco3 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges
r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh
r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger
r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix
r-cran-matrixstats r-cran-rcurl r-cran-snow
sbuild-build-depends-r-bioc-genomicalignments-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 195 newly installed, 0 to remove and 18 not upgraded.
Need to get 197 MB of archives.
After this operation, 653 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
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Get:10 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
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Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
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Get:20 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
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Get:30 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-1 [1176 kB]
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Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.7-1 [1366 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b5 [36.5 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.2-3 [172 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [55.7 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.7 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.3-1 [24.7 MB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.2.0-16+rpi1 [278 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.2.0-16+rpi1 [56.1 MB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.2.0-1+rpi1 [1428 B]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2+20200918-1 [290 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2+20200918-1 [940 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.1~rc2-2 [121 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-4 [172 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-4 [9248 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.3-1 [4484 B]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.05-1 [90.3 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.26-1 [79.4 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libsub-install-perl all 0.928-1 [11.4 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libdata-optlist-perl all 0.110-1 [10.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-perl all 0.38-1 [21.7 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libdevel-globaldestruction-perl all 0.14-1 [8084 B]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libdist-checkconflicts-perl all 0.11-1 [10.8 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1 [6882 B]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libmoose-perl armhf 2.2013-1+b1 [806 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20201117 [40.8 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-7+b1 [9098 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b5 [4624 B]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.36.0-1 [648 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biobase armhf 2.50.0-1 [2228 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formatr all 1.7-2 [151 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf r-cran-snow all 1:0.4.3-2 [109 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocparallel armhf 1.24.1-1 [1136 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.28.0-1 [2019 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.24.0-1 [2204 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-xvector armhf 0.30.0-1 [611 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf r-cran-crayon all 1.3.4-5 [750 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biostrings armhf 2.58.0-1 [14.2 MB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1+b1 [3451 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.57.0-1 [574 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-matrixgenerics all 1.2.0-2 [285 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-delayedarray armhf 0.16.0+dfsg-1 [1802 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bitops armhf 1.0-6-5 [23.6 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcurl armhf 1.98-1.2-1+b1 [788 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodb all 1.26.0-1 [3912 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomicranges armhf 1.42.0+dfsg-1 [1864 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-rhtslib armhf 1.22.0+dfsg-1 [948 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-rsamtools armhf 2.6.0-1 [3572 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 197 MB in 15s (12.8 MB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12762 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../001-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
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Preparing to unpack .../002-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
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Preparing to unpack .../003-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
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Preparing to unpack .../004-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../005-libmagic1_1%3a5.38-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-5) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.38-5_armhf.deb ...
Unpacking file (1:5.38-5) ...
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Preparing to unpack .../007-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../008-libswitch-perl_2.17-2_all.deb ...
Unpacking libswitch-perl (2.17-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../009-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../010-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../011-m4_1.4.18-4_armhf.deb ...
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invoke-rc.d: could not determine current runlevel
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Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1) ...
Setting up libpackage-stash-perl (0.38-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up r-base-core (4.0.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.3.4-5) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-41-1+b1) ...
Setting up r-cran-formatr (1.7-2) ...
Setting up libpackage-deprecationmanager-perl (0.17-1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libb-hooks-endofscope-perl (0.24-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.4-1) ...
Setting up r-bioc-biocgenerics (0.36.0-1) ...
Setting up r-cran-matrixstats (0.57.0-1) ...
Setting up r-base-dev (4.0.3-1) ...
Setting up r-bioc-matrixgenerics (1.2.0-2) ...
Setting up libmoose-perl (2.2013-1+b1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.3-2) ...
Setting up r-cran-bitops (1.0-6-5) ...
Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ...
Setting up r-bioc-biobase (2.50.0-1) ...
Setting up r-bioc-s4vectors (0.28.0-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-matrix (1.2-18-1+b1) ...
Setting up r-bioc-iranges (2.24.0-1) ...
Setting up r-cran-rcurl (1.98-1.2-1+b1) ...
Setting up r-bioc-delayedarray (0.16.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.24.1-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.26.0-1) ...
Setting up r-bioc-xvector (0.30.0-1) ...
Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.58.0-1) ...
Setting up r-bioc-rsamtools (2.6.0-1) ...
Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up dh-r (20201117) ...
Setting up sbuild-build-depends-r-bioc-genomicalignments-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201117 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:10.2.0-1+rpi1 gfortran-10_10.2.0-16+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libb-hooks-endofscope-perl_0.24-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-dev_1.71.0.3+b5 libboost-iostreams1.71.0_1.71.0-7 libboost1.71-dev_1.71.0-7+b1 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-16+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libcurl4_7.72.0-1 libcwidget4_0.5.18-5 libdata-optlist-perl_0.110-1 libdatrie1_0.2.12-3+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1 libdpkg-perl_1.20.5+rpi1 libdynaloader-functions-perl_0.003-1 libelf1_0.182-1 libencode-locale-perl_1.05-1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran-10-dev_10.2.0-16+rpi1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10+b3 libharfbuzz0b_2.6.7-1 libhogweed6_3.6-2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.26-1 libice6_2:1.0.10-1 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-3 libio-html-perl_1.001-1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1 libldap-common_2.4.56+dfsg-1+rpi1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmodule-implementation-perl_0.09-1 libmodule-runtime-conflicts-perl_0.003-1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2013-1+b1 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20200918-1 libncurses5-dev_6.2+20200918-1 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpackage-deprecationmanager-perl_0.17-1 libpackage-stash-perl_0.38-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.46.2-3 libpangocairo-1.0-0_1.46.2-3 libpangoft2-1.0-0_1.46.2-3 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libreadline-dev_8.1~rc2-2 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtimedate-perl_2.3300-1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36-3 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.2 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 r-bioc-biobase_2.50.0-1 r-bioc-biocgenerics_0.36.0-1 r-bioc-biocparallel_1.24.1-1 r-bioc-biostrings_2.58.0-1 r-bioc-delayedarray_0.16.0+dfsg-1 r-bioc-genomeinfodb_1.26.0-1 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-genomicranges_1.42.0+dfsg-1 r-bioc-iranges_2.24.0-1 r-bioc-matrixgenerics_1.2.0-2 r-bioc-rhtslib_1.22.0+dfsg-1 r-bioc-rsamtools_2.6.0-1 r-bioc-s4vectors_0.28.0-1 r-bioc-summarizedexperiment_1.20.0+dfsg-1 r-bioc-xvector_0.30.0-1 r-bioc-zlibbioc_1.36.0+dfsg-1 r-cran-bh_1.66.0-1 r-cran-bitops_1.0-6-5 r-cran-crayon_1.3.4-5 r-cran-formatr_1.7-2 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-41-1+b1 r-cran-matrix_1.2-18-1+b1 r-cran-matrixstats_0.57.0-1 r-cran-rcurl_1.98-1.2-1+b1 r-cran-snow_1:0.4.3-2 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genomicalignments-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 ucf_3.0043 unzip_6.0-25 util-linux_2.36-3 x11-common_1:7.7+21 xauth_1:1.0.10-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.5AUavKO0/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 3 09:48:23 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-genomicalignments_1.26.0-1.dsc
dpkg-source: info: extracting r-bioc-genomicalignments in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-genomicalignments_1.26.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genomicalignments_1.26.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying disable-testing-pasillaBamSubset.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-68b64f95-8c42-43b0-a4f8-ee44155fc23d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-genomicalignments
dpkg-buildpackage: info: source version 1.26.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit, shortread (>= 1.24.0)
I: R Package: GenomicAlignments Version: 1.26.0
I: Building using R version 4.0.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 03 Nov 2020 10:07:02 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 03 Nov 2020 10:07:02 +0100'"
* installing *source* package 'GenomicAlignments' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cigar_utils.c -o cigar_utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-genomicalignments/usr/lib/R/site-library/00LOCK-r-bioc-genomicalignments-1.26.0/00new/GenomicAlignments/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicAlignments)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.3)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.23.9)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.13.1)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.9.13)
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.55.7)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2)
I: Using r-cran-runit for Recommends:runit
I: Using r-bioc-shortread for Recommends:shortread (>= 1.24.0)
I: Using r-bioc-shortread for Suggests:ShortRead
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14
W: Cannot find a debian package for Suggests:pasillaBamSubset
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-edger for Suggests:edgeR
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-genomicranges for Imports:GenomicRanges
I: Using r-bioc-biostrings for Imports:Biostrings
I: Using r-bioc-rsamtools for Imports:Rsamtools
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: BioConductor API version: r-api-bioc-3.12
I: Use r-bioc-genomicalignments as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -a -O--buildsystem=R
dh_strip -a -a -O--buildsystem=R
dh_makeshlibs -a -a -O--buildsystem=R
dh_shlibdeps -a -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genomicalignments-dbgsym' in '../r-bioc-genomicalignments-dbgsym_1.26.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-genomicalignments' in '../r-bioc-genomicalignments_1.26.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-genomicalignments_1.26.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-24T05:26:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-genomicalignments_1.26.0-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Tue, 03 Nov 2020 10:07:02 +0100
Source: r-bioc-genomicalignments
Binary: r-bioc-genomicalignments r-bioc-genomicalignments-dbgsym
Architecture: armhf
Version: 1.26.0-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-genomicalignments - BioConductor representation and manipulation of short genomic ali
Changes:
r-bioc-genomicalignments (1.26.0-1) unstable; urgency=medium
.
* New upstream version
* debhelper-compat 13 (routine-update)
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+------------------------------------------------------------------------------+
| Package contents |
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r-bioc-genomicalignments-dbgsym_1.26.0-1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 62156 bytes: control archive=544 bytes.
433 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-genomicalignments-dbgsym
Source: r-bioc-genomicalignments
Version: 1.26.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 87
Depends: r-bioc-genomicalignments (= 1.26.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-genomicalignments
Build-Ids: 209d50f43b3be26ed97607fd52c8027594aceee8
drwxr-xr-x root/root 0 2020-11-03 09:07 ./
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root 78132 2020-11-03 09:07 ./usr/lib/debug/.build-id/20/9d50f43b3be26ed97607fd52c8027594aceee8.debug
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/share/
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-11-03 09:07 ./usr/share/doc/r-bioc-genomicalignments-dbgsym -> r-bioc-genomicalignments
r-bioc-genomicalignments_1.26.0-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 2213640 bytes: control archive=2320 bytes.
1184 bytes, 17 lines control
4942 bytes, 50 lines md5sums
Package: r-bioc-genomicalignments
Version: 1.26.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2984
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-biocgenerics (>= 0.15.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel, libc6 (>= 2.4)
Recommends: r-cran-runit, r-bioc-shortread (>= 1.24.0)
Suggests: r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-deseq2, r-bioc-edger
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Description: BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and
manipulating short genomic alignments (typically obtained by aligning
short reads to a reference genome). This includes read counting,
computing the coverage, junction detection, and working with the
nucleotide content of the alignments.
drwxr-xr-x root/root 0 2020-11-03 09:07 ./
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-rw-r--r-- root/root 940 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/CITATION
-rw-r--r-- root/root 2545 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
-rw-r--r-- root/root 2050 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/INDEX
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/Meta/
-rw-r--r-- root/root 2957 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
-rw-r--r-- root/root 131 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
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-rw-r--r-- root/root 2459 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
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drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/extdata/
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-rw-r--r-- root/root 95007 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/help/
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drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/html/
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-rw-r--r-- root/root 1335 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/html/R.css
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/libs/
-rw-r--r-- root/root 54912 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
drwxr-xr-x root/root 0 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/unitTests/
-rw-r--r-- root/root 1174 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
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-rw-r--r-- root/root 4374 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
-rw-r--r-- root/root 6006 2020-11-03 09:07 ./usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
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-rw-r--r-- root/root 1262 2020-11-03 09:07 ./usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
-rw-r--r-- root/root 5349 2020-11-03 09:07 ./usr/share/doc/r-bioc-genomicalignments/copyright
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
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Build Architecture: armhf
Build-Space: 8748
Build-Time: 411
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1280
Job: r-bioc-genomicalignments_1.26.0-1
Machine Architecture: armhf
Package: r-bioc-genomicalignments
Package-Time: 1742
Source-Version: 1.26.0-1
Space: 8748
Status: successful
Version: 1.26.0-1
--------------------------------------------------------------------------------
Finished at 2020-11-24T05:26:38Z
Build needed 00:29:02, 8748k disc space