r-bioc-genefilter →
1.68.0-2 →
armhf → 2020-03-05 11:38:46
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| r-bioc-genefilter 1.68.0-2 (armhf) Thu, 05 Mar 2020 11:21:10 +0000 |
+==============================================================================+
Package: r-bioc-genefilter
Version: 1.68.0-2
Source Version: 1.68.0-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-a0c42f71-6401-4d49-b23b-6894670a3325' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 12s (1984 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-genefilter' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1428 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-genefilter 1.68.0-2 (dsc) [2245 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-genefilter 1.68.0-2 (tar) [1421 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-genefilter 1.68.0-2 (diff) [4408 B]
Fetched 1428 kB in 0s (3764 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-fBUiv5/r-bioc-genefilter-1.68.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-fBUiv5' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QGCnrr/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QGCnrr/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QGCnrr/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (5315 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-QGCnrr/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 20 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14075 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.31.2), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.31.2), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival
dpkg-deb: building package 'sbuild-build-depends-r-bioc-genefilter-dummy' in '/<<BUILDDIR>>/resolver-QGCnrr/apt_archive/sbuild-build-depends-r-bioc-genefilter-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genefilter-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Packages [638 B]
Fetched 2527 B in 0s (6357 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-QGCnrr/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install r-bioc-genefilter build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gettext
gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost1.67-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-s1
libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu63 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses-dev libncurses5-dev libncurses6 libncursesw6 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5 libtinfo6 libtk8.6
libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db ncurses-bin openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-cran-bh r-cran-bit
r-cran-bit64 r-cran-bitops r-cran-blob r-cran-dbi r-cran-digest
r-cran-ellipsis r-cran-glue r-cran-lattice r-cran-littler r-cran-matrix
r-cran-memoise r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-rcpp
r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-survival r-cran-vctrs
r-cran-xml r-cran-xtable sensible-utils ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-genefilter r-bioc-biostrings r-bioc-go.db
r-cran-runit r-bioc-graph r-cran-knitr r-bioc-all r-bioc-genomicranges
r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy r-bioc-deseq2
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-summarizedexperiment
r-bioc-shortread r-cran-data.table r-cran-covr r-cran-crayon r-cran-pillar
r-cran-rmysql r-cran-magrittr r-cran-rmarkdown r-cran-r.utils r-cran-forcats
r-cran-stringr r-cran-ggplot2 r-cran-dplyr r-cran-withr r-cran-getopt
libgdal-dev r-cran-httr r-cran-testthat r-cran-inline r-cran-cli r-cran-xml2
r-cran-zeallot r-cran-plm r-cran-zoo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-bioc-go.db r-cran-runit r-bioc-xvector r-bioc-genomicranges
r-cran-testthat r-cran-rmarkdown r-cran-dbitest r-cran-tibble
r-cran-generics libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gettext
gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost1.67-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-s1
libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu63 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl
pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-iranges
r-bioc-s4vectors r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-glue r-cran-lattice
r-cran-littler r-cran-matrix r-cran-memoise r-cran-pkgconfig
r-cran-pkgkitten r-cran-plogr r-cran-rcpp r-cran-rcurl r-cran-rlang
r-cran-rsqlite r-cran-survival r-cran-vctrs r-cran-xml r-cran-xtable
sbuild-build-depends-r-bioc-genefilter-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libncursesw6 libtinfo6 ncurses-bin
3 upgraded, 167 newly installed, 0 to remove and 17 not upgraded.
Need to get 129 MB of archives.
After this operation, 435 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QGCnrr/apt_archive ./ sbuild-build-depends-r-bioc-genefilter-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.2-1 [321 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf ncurses-bin armhf 6.2-1 [414 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.2-1 [104 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200211-1+rpi1 [195 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200211-1+rpi1 [36.2 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-13 [513 kB]
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Get:33 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-2 [104 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.5-1 [1140 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-5 [133 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-5 [108 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-5 [99.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200211-1+rpi1 [229 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-8 [168 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-8 [62.4 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-8 [52.1 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.3-1 [24.3 MB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-25+rpi1 [279 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-25+rpi1 [8095 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-1 [113 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-1 [2981 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2-1 [284 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2-1 [932 B]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-4 [116 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.3-1 [4488 B]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20200104 [38.2 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.9-1 [308 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.9-1 [14.6 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biobase armhf 2.46.0-1 [2229 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.24.3-1 [1940 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.20.2-1 [2215 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dbi all 1.1.0-2 [552 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit armhf 1.1-15.2-1 [225 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rlang armhf 0.4.4-1 [1119 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ellipsis armhf 0.3.0-1 [30.3 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf r-cran-digest armhf 0.6.25-1 [178 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf r-cran-glue armhf 1.3.1-1 [156 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf r-cran-vctrs armhf 0.2.3-1 [863 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf r-cran-blob all 1.2.1-1 [49.5 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgconfig all 2.0.3-1 [19.7 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.1.5-1 [23.8 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.3-1 [1928 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plogr all 0.2.0-2 [14.7 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rsqlite armhf 2.2.0-1 [800 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotationdbi all 1.48.0-1 [4629 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xml armhf 3.99-0.3-2 [1693 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xtable all 1:1.8-4-1 [691 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcurl armhf 1.98-1.1-1 [733 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotate all 1.64.0+dfsg-1 [2113 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-40-1 [1136 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1 [3468 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf r-cran-survival armhf 3.1-8-1 [7405 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking groff-base (1.22.4-4) ...
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Unpacking man-db (2.9.1-1) ...
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Unpacking libmagic1:armhf (1:5.38-4) ...
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Unpacking file (1:5.38-4) ...
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Unpacking m4 (1.4.18-4) ...
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Unpacking autoconf (2.69-11.1) ...
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Unpacking sbuild-build-depends-r-bioc-genefilter-dummy (0.invalid.0) ...
Setting up libboost1.67-dev:armhf (1.67.0-17) ...
Setting up libexpat1:armhf (2.2.9-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-12) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libgraphite2-3:armhf (1.3.13-11) ...
Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libpcre16-3:armhf (2:8.39-12) ...
Setting up libdatrie1:armhf (0.2.12-3+b1) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.67-2) ...
Setting up libglib2.0-0:armhf (2.62.5-1) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up unzip (6.0-25) ...
Setting up libdebhelper-perl (12.9) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up x11-common (1:7.7+20) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.34-7) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up gcc-10-base:armhf (10-20200211-1+rpi1) ...
Setting up zip (3.0-11) ...
Setting up autotools-dev (20180224.1) ...
Setting up libpcre2-32-0:armhf (10.34-7) ...
Setting up libblas3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libswitch-perl (2.17-2) ...
Setting up libx11-data (2:1.6.9-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up libpcre32-3:armhf (2:8.39-12) ...
Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up icu-devtools (63.2-2) ...
Setting up pkg-config (0.29-6) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpcre2-posix2:armhf (10.34-7) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1.2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libboost-dev:armhf (1.67.0.2+b11) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up openssl (1.1.1d-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (63.2-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up xdg-utils (1.1.3-1) ...
Setting up libblas-dev:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up r-cran-bh (1.66.0-1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libncurses-dev:armhf (6.2-1) ...
Setting up libxcb1:armhf (1.13.1-5) ...
Setting up libpcre2-dev:armhf (10.34-7) ...
Setting up libtool (2.4.6-13) ...
Setting up libxcb-render0:armhf (1.13.1-5) ...
Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up libpng-dev:armhf (1.6.37-2) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libxcb-shm0:armhf (1.13.1-5) ...
Setting up libreadline-dev:armhf (8.0-4) ...
Setting up libgcc-s1:armhf (10-20200211-1+rpi1) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libgfortran5:armhf (10-20200211-1+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libncurses5-dev:armhf (6.2-1) ...
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libx11-6:armhf (2:1.6.9-2) ...
Setting up libharfbuzz0b:armhf (2.6.4-1+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libgfortran-9-dev:armhf (9.2.1-25+rpi1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up liblapack-dev:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up gfortran-9 (9.2.1-25+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-8) ...
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-8) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-8) ...
Setting up r-base-core (3.6.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.20-40-1) ...
Setting up r-cran-xml (3.99-0.3-2) ...
Setting up r-cran-pkgkitten (0.1.5-1) ...
Setting up r-cran-littler (0.3.9-1) ...
Setting up r-cran-rcpp (1.0.3-1) ...
Setting up r-bioc-biocgenerics (0.32.0-1) ...
Setting up r-cran-rlang (0.4.4-1) ...
Setting up r-base-dev (3.6.3-1) ...
Setting up littler (0.3.9-1) ...
Setting up r-cran-plogr (0.2.0-2) ...
Setting up r-cran-digest (0.6.25-1) ...
Setting up r-cran-dbi (1.1.0-2) ...
Setting up r-cran-glue (1.3.1-1) ...
Setting up r-cran-bit (1.1-15.2-1) ...
Setting up r-cran-xtable (1:1.8-4-1) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-cran-bit64 (0.9-7-3) ...
Setting up r-bioc-biobase (2.46.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-1) ...
Setting up r-bioc-s4vectors (0.24.3-1) ...
Setting up r-cran-memoise (1.1.0-2) ...
Setting up r-cran-matrix (1.2-18-1) ...
Setting up r-bioc-iranges (2.20.2-1) ...
Setting up r-cran-rcurl (1.98-1.1-1) ...
Setting up r-cran-ellipsis (0.3.0-1) ...
Setting up r-cran-survival (3.1-8-1) ...
Setting up r-cran-vctrs (0.2.3-1) ...
Setting up r-cran-blob (1.2.1-1) ...
Setting up r-cran-rsqlite (2.2.0-1) ...
Setting up r-bioc-annotationdbi (1.48.0-1) ...
Setting up r-bioc-annotate (1.64.0+dfsg-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up dh-r (20200104) ...
Setting up sbuild-build-depends-r-bioc-genefilter-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-10+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.34-3+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-10+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3+rpi1 binutils-arm-linux-gnueabihf_2.34-3+rpi1 binutils-common_2.34-3+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-r_20200104 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200211-1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1+rpi1 gfortran-9_9.2.1-25+rpi1 gnupg_2.2.19-2 gnupg-l10n_2.2.19-2 gnupg-utils_2.2.19-2 gpg_2.2.19-2 gpg-agent_2.2.19-2 gpg-wks-client_2.2.19-2 gpg-wks-server_2.2.19-2 gpgconf_2.2.19-2 gpgsm_2.2.19-2 gpgv_2.2.19-2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4+b1 libarchive-zip-perl_1.67-2 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3+rpi1 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b11 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-10+rpi1 libc-dev-bin_2.29-10+rpi1 libc6_2.29-10+rpi1 libc6-dev_2.29-10+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_9.2.1-25+rpi1 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r-bioc-biocgenerics_0.32.0-1 r-bioc-iranges_2.20.2-1 r-bioc-s4vectors_0.24.3-1 r-cran-bh_1.66.0-1 r-cran-bit_1.1-15.2-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.2.1-1 r-cran-dbi_1.1.0-2 r-cran-digest_0.6.25-1 r-cran-ellipsis_0.3.0-1 r-cran-glue_1.3.1-1 r-cran-lattice_0.20-40-1 r-cran-littler_0.3.9-1 r-cran-matrix_1.2-18-1 r-cran-memoise_1.1.0-2 r-cran-pkgconfig_2.0.3-1 r-cran-pkgkitten_0.1.5-1 r-cran-plogr_0.2.0-2 r-cran-rcpp_1.0.3-1 r-cran-rcurl_1.98-1.1-1 r-cran-rlang_0.4.4-1 r-cran-rsqlite_2.2.0-1 r-cran-survival_3.1-8-1 r-cran-vctrs_0.2.3-1 r-cran-xml_3.99-0.3-2 r-cran-xtable_1:1.8-4-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genefilter-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.34-0.1 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Mar 3 07:31:18 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-genefilter_1.68.0-2.dsc
dpkg-source: info: extracting r-bioc-genefilter in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-genefilter_1.68.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genefilter_1.68.0-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=c605eeb4e47242eab5a84ad883abfd9b
JOURNAL_STREAM=8:18382
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
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SCHROOT_COMMAND=env
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SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a0c42f71-6401-4d49-b23b-6894670a3325
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c84892
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-genefilter
dpkg-buildpackage: info: source version 1.68.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: class, knitr
I: R Package: genefilter Version: 1.68.0
I: Building using R version 3.6.3-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Tue, 03 Mar 2020 10:47:32 +0530
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 03 Mar 2020 10:47:32 +0530'"
* installing *source* package 'genefilter' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c half_range_mode.cpp -o half_range_mode.o
In file included from /usr/include/c++/9/vector:72,
from half_range_mode.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'double half_range_mode(double*, double*, double, int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nd.c -o nd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pAUC.c -o pAUC.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowPAUCs.c -o rowPAUCs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowttests.c -o rowttests.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-CtMU1R/r-base-3.6.3=. -fstack-protector-strong -c ttest.f -o ttest.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library/00LOCK-r-bioc-genefilter-1.68.0/00new/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genefilter)
I: Using r-cran-class for Recommends:class
I: Using r-cran-knitr for Recommends:knitr
W: Cannot find a debian package for Suggests:hgu95av2.db
W: Cannot find a debian package for Suggests:tkWidgets
I: Using r-bioc-all for Suggests:ALL
W: Cannot find a debian package for Suggests:ROC
W: Cannot find a debian package for Suggests:DESeq
W: Cannot find a debian package for Suggests:pasilla
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.31.2)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi
I: Using r-bioc-annotate for Imports:annotate
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-cran-survival for Imports:survival
I: BioConductor API version: r-api-bioc-3.10
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genefilter' in '../r-bioc-genefilter_1.68.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-genefilter-dbgsym' in '../r-bioc-genefilter-dbgsym_1.68.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../r-bioc-genefilter_1.68.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-05T11:38:29Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-genefilter_1.68.0-2_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Tue, 03 Mar 2020 10:47:32 +0530
Source: r-bioc-genefilter
Binary: r-bioc-genefilter r-bioc-genefilter-dbgsym
Architecture: armhf
Version: 1.68.0-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
r-bioc-genefilter - methods for filtering genes from microarray experiments
Changes:
r-bioc-genefilter (1.68.0-2) unstable; urgency=medium
.
[ Nilesh Patra ]
* Team Upload.
* Use knitr to weave
* Add "Rules-Requires-Root:no"
* Bump standards version to 4.5.0
.
[ Andreas Tille ]
* Add salsa-ci file (routine-update)
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Thu, 05 Mar 2020 11:38:27 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-11.1),
automake (= 1:1.16.1-4),
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bsdutils (= 1:2.34-0.1),
build-essential (= 12.8),
bzip2 (= 1.0.8-2),
ca-certificates (= 20190110),
coreutils (= 8.30-3),
cpp (= 4:9.2.1-3.1+rpi1),
cpp-9 (= 9.2.1-25+rpi1),
dash (= 0.5.10.2-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.73),
debhelper (= 12.9),
debianutils (= 4.9.1),
dh-autoreconf (= 19),
dh-r (= 20200104),
dh-strip-nondeterminism (= 1.6.3-2),
diffutils (= 1:3.7-3),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-5),
fdisk (= 2.34-0.1),
file (= 1:5.38-4),
findutils (= 4.7.0-1),
fontconfig (= 2.13.1-2),
fontconfig-config (= 2.13.1-2),
fonts-dejavu-core (= 2.37-1),
g++ (= 4:9.2.1-3.1+rpi1),
g++-9 (= 9.2.1-25+rpi1),
gcc (= 4:9.2.1-3.1+rpi1),
gcc-10-base (= 10-20200211-1+rpi1),
gcc-9 (= 9.2.1-25+rpi1),
gcc-9-base (= 9.2.1-25+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
gfortran (= 4:9.2.1-3.1+rpi1),
gfortran-9 (= 9.2.1-25+rpi1),
grep (= 3.4-1),
groff-base (= 1.22.4-4),
gzip (= 1.10-1),
hostname (= 3.23),
icu-devtools (= 63.2-2),
init-system-helpers (= 1.57),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-5),
libarchive-zip-perl (= 1.67-2),
libasan5 (= 9.2.1-25+rpi1),
libatomic1 (= 9.2.1-25+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-2),
libaudit1 (= 1:2.8.5-2+b1),
libbinutils (= 2.34-3+rpi1),
libblas-dev (= 3.9.0-1),
libblas3 (= 3.9.0-1),
libblkid1 (= 2.34-0.1),
libboost-dev (= 1.67.0.2+b11),
libboost1.67-dev (= 1.67.0-17),
libbrotli1 (= 1.0.7-6),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-2),
libbz2-dev (= 1.0.8-2),
libc-bin (= 2.29-10+rpi1),
libc-dev-bin (= 2.29-10+rpi1),
libc6 (= 2.29-10+rpi1),
libc6-dev (= 2.29-10+rpi1),
libcairo2 (= 1.16.0-4),
libcap-ng0 (= 0.7.9-2.1),
libcc1-0 (= 9.2.1-25+rpi1),
libcom-err2 (= 1.45.5-2),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.10-10+b5),
libcrypt1 (= 1:4.4.10-10+b5),
libctf-nobfd0 (= 2.34-3+rpi1),
libctf0 (= 2.34-3+rpi1),
libcurl4 (= 7.68.0-1),
libdatrie1 (= 0.2.12-3+b1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.251),
libdebhelper-perl (= 12.9),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libexpat1 (= 2.2.9-1),
libfdisk1 (= 2.34-0.1),
libffi7 (= 3.3-3),
libfile-stripnondeterminism-perl (= 1.6.3-2),
libfile-which-perl (= 1.23-1),
libfontconfig1 (= 2.13.1-2),
libfreetype6 (= 2.10.1-2),
libfribidi0 (= 1.0.8-2),
libgcc-9-dev (= 9.2.1-25+rpi1),
libgcc-s1 (= 10-20200211-1+rpi1),
libgcc1 (= 1:9.2.1-25+rpi1),
libgcrypt20 (= 1.8.5-3),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libgfortran-9-dev (= 9.2.1-25+rpi1),
libgfortran5 (= 10-20200211-1+rpi1),
libglib2.0-0 (= 2.62.5-1),
libgmp10 (= 2:6.2.0+dfsg-4),
libgnutls30 (= 3.6.12-2),
libgomp1 (= 9.2.1-25+rpi1),
libgpg-error0 (= 1.37-1),
libgraphite2-3 (= 1.3.13-11),
libgssapi-krb5-2 (= 1.17-6+b1),
libharfbuzz0b (= 2.6.4-1+rpi1),
libhogweed5 (= 3.5.1+really3.5.1-2),
libice6 (= 2:1.0.9-2),
libicu-dev (= 63.2-2),
libicu63 (= 63.2-2),
libidn2-0 (= 2.2.0-2),
libisl22 (= 0.22.1-1),
libjbig0 (= 2.1-3.1+b2),
libjpeg-dev (= 1:1.5.2-2),
libjpeg62-turbo (= 1:1.5.2-2+b1),
libjpeg62-turbo-dev (= 1:1.5.2-2+b1),
libk5crypto3 (= 1.17-6+b1),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-6+b1),
libkrb5support0 (= 1.17-6+b1),
liblapack-dev (= 3.9.0-1),
liblapack3 (= 3.9.0-1),
libldap-2.4-2 (= 2.4.49+dfsg-1+rpi1),
libldap-common (= 2.4.49+dfsg-1+rpi1),
liblz4-1 (= 1.9.2-2),
liblzma-dev (= 5.2.4-1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-4),
libmagic1 (= 1:5.38-4),
libmount1 (= 2.34-0.1),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncurses-dev (= 6.2-1),
libncurses5-dev (= 6.2-1),
libncurses6 (= 6.2-1),
libncursesw6 (= 6.2-1),
libnettle7 (= 3.5.1+really3.5.1-2),
libnghttp2-14 (= 1.40.0-1+b2),
libp11-kit0 (= 0.23.20-1),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpango-1.0-0 (= 1.42.4-8),
libpangocairo-1.0-0 (= 1.42.4-8),
libpangoft2-1.0-0 (= 1.42.4-8),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libpcre16-3 (= 2:8.39-12),
libpcre2-16-0 (= 10.34-7),
libpcre2-32-0 (= 10.34-7),
libpcre2-8-0 (= 10.34-7),
libpcre2-dev (= 10.34-7),
libpcre2-posix2 (= 10.34-7),
libpcre3 (= 2:8.39-12),
libpcre3-dev (= 2:8.39-12),
libpcre32-3 (= 2:8.39-12),
libpcrecpp0v5 (= 2:8.39-12),
libperl5.30 (= 5.30.0-9),
libpipeline1 (= 1.5.2-2),
libpixman-1-0 (= 0.36.0-1),
libpng-dev (= 1.6.37-2),
libpng16-16 (= 1.6.37-2),
libpsl5 (= 0.20.2-2),
libreadline-dev (= 8.0-4),
libreadline8 (= 8.0-4),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.4.2-2+rpi1),
libselinux1 (= 3.0-1),
libsigsegv2 (= 2.12-2),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.34-0.1),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1d-2),
libstdc++-9-dev (= 9.2.1-25+rpi1),
libstdc++6 (= 9.2.1-25+rpi1),
libsub-override-perl (= 0.09-2),
libswitch-perl (= 2.17-2),
libsystemd0 (= 244.3-1+rpi1),
libtasn1-6 (= 4.16.0-2),
libtcl8.6 (= 8.6.10+dfsg-1),
libthai-data (= 0.1.28-3),
libthai0 (= 0.1.28-3),
libtiff5 (= 4.1.0+git191117-2),
libtinfo5 (= 6.2-1),
libtinfo6 (= 6.2-1),
libtk8.6 (= 8.6.10-1),
libtool (= 2.4.6-13),
libubsan1 (= 9.2.1-25+rpi1),
libuchardet0 (= 0.0.6-3),
libudev1 (= 244.3-1+rpi1),
libunistring2 (= 0.9.10-2),
libuuid1 (= 2.34-0.1),
libwebp6 (= 0.6.1-2),
libx11-6 (= 2:1.6.9-2),
libx11-data (= 2:1.6.9-2),
libxau6 (= 1:1.0.8-1+b2),
libxcb-render0 (= 1.13.1-5),
libxcb-shm0 (= 1.13.1-5),
libxcb1 (= 1.13.1-5),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.3-1+b2),
libxft2 (= 2.3.2-2),
libxml2 (= 2.9.4+dfsg1-8),
libxmuu1 (= 2:1.1.2-2+b3),
libxrender1 (= 1:0.9.10-1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.1.5-1+b3),
libzstd1 (= 1.4.4+dfsg-3+rpi1),
linux-libc-dev (= 5.2.17-1+rpi1+b2),
littler (= 0.3.9-1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.2.1-1.2),
man-db (= 2.9.1-1),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.1+20191019-1),
ncurses-bin (= 6.2-1),
openssl (= 1.1.1d-2),
patch (= 2.7.6-6),
perl (= 5.30.0-9),
perl-base (= 5.30.0-9),
perl-modules-5.30 (= 5.30.0-9),
pkg-config (= 0.29-6),
po-debconf (= 1.0.21),
r-base-core (= 3.6.3-1),
r-base-dev (= 3.6.3-1),
r-bioc-annotate (= 1.64.0+dfsg-1),
r-bioc-annotationdbi (= 1.48.0-1),
r-bioc-biobase (= 2.46.0-1),
r-bioc-biocgenerics (= 0.32.0-1),
r-bioc-iranges (= 2.20.2-1),
r-bioc-s4vectors (= 0.24.3-1),
r-cran-bh (= 1.66.0-1),
r-cran-bit (= 1.1-15.2-1),
r-cran-bit64 (= 0.9-7-3),
r-cran-bitops (= 1.0-6-4),
r-cran-blob (= 1.2.1-1),
r-cran-dbi (= 1.1.0-2),
r-cran-digest (= 0.6.25-1),
r-cran-ellipsis (= 0.3.0-1),
r-cran-glue (= 1.3.1-1),
r-cran-lattice (= 0.20-40-1),
r-cran-littler (= 0.3.9-1),
r-cran-matrix (= 1.2-18-1),
r-cran-memoise (= 1.1.0-2),
r-cran-pkgconfig (= 2.0.3-1),
r-cran-pkgkitten (= 0.1.5-1),
r-cran-plogr (= 0.2.0-2),
r-cran-rcpp (= 1.0.3-1),
r-cran-rcurl (= 1.98-1.1-1),
r-cran-rlang (= 0.4.4-1),
r-cran-rsqlite (= 2.2.0-1),
r-cran-survival (= 3.1-8-1),
r-cran-vctrs (= 0.2.3-1),
r-cran-xml (= 3.99-0.3-2),
r-cran-xtable (= 1:1.8-4-1),
readline-common (= 8.0-4),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-2.1),
tar (= 1.30+dfsg-6),
tzdata (= 2019c-3),
ucf (= 3.0038+nmu1),
unzip (= 6.0-25),
util-linux (= 2.34-0.1),
x11-common (= 1:7.7+20),
xauth (= 1:1.0.10-1),
xdg-utils (= 1.1.3-1),
xz-utils (= 5.2.4-1),
zip (= 3.0-11),
zlib1g (= 1:1.2.11.dfsg-1.2),
zlib1g-dev (= 1:1.2.11.dfsg-1.2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1583212652"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-genefilter-dbgsym_1.68.0-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 48980 bytes: control archive=544 bytes.
405 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-genefilter-dbgsym
Source: r-bioc-genefilter
Version: 1.68.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 62
Depends: r-bioc-genefilter (= 1.68.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-genefilter
Build-Ids: 2c0be35ac4a28338ddae4a1a95919a5b88854a3b
drwxr-xr-x root/root 0 2020-03-03 05:17 ./
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 52624 2020-03-03 05:17 ./usr/lib/debug/.build-id/2c/0be35ac4a28338ddae4a1a95919a5b88854a3b.debug
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/share/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-03-03 05:17 ./usr/share/doc/r-bioc-genefilter-dbgsym -> r-bioc-genefilter
r-bioc-genefilter_1.68.0-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 1659400 bytes: control archive=2080 bytes.
779 bytes, 14 lines control
4753 bytes, 54 lines md5sums
Package: r-bioc-genefilter
Version: 1.68.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1981
Depends: r-base-core (>= 3.6.3-1), r-api-3.5, r-api-bioc-3.10, r-bioc-biocgenerics (>= 0.31.2), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 4.3.0)
Recommends: r-cran-class, r-cran-knitr
Suggests: r-bioc-all, r-cran-rcolorbrewer
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/genefilter/
Description: methods for filtering genes from microarray experiments
This BioConductor module provides methods for filtering genes from microarray
experiments. It contains some basic functions for filtering genes.
drwxr-xr-x root/root 0 2020-03-03 05:17 ./
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/R/
drwxr-xr-x root/root 0 2020-03-03 05:17 ./usr/lib/R/site-library/
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Build Architecture: armhf
Build Type: any
Build-Space: 5800
Build-Time: 82
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 923
Job: r-bioc-genefilter_1.68.0-2
Machine Architecture: armhf
Package: r-bioc-genefilter
Package-Time: 1039
Source-Version: 1.68.0-2
Space: 5800
Status: successful
Version: 1.68.0-2
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Finished at 2020-03-05T11:38:29Z
Build needed 00:17:19, 5800k disk space