r-bioc-genefilter →
1.64.0-1 →
armhf → 2018-11-16 05:10:23
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-genefilter 1.64.0-1 (armhf) Fri, 16 Nov 2018 05:00:18 +0000 |
+==============================================================================+
Package: r-bioc-genefilter
Version: 1.64.0-1
Source Version: 1.64.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a7abc734-e196-4d4d-9f11-650f593cc565' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 9s (2688 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-genefilter' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1439 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-genefilter 1.64.0-1 (dsc) [2211 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-genefilter 1.64.0-1 (tar) [1433 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-genefilter 1.64.0-1 (diff) [3976 B]
Fetched 1439 kB in 0s (6072 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-Ii4ogF/r-bioc-genefilter-1.64.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-Ii4ogF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3CM8oY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3CM8oY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3CM8oY/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9590 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival
dpkg-deb: building package 'sbuild-build-depends-r-bioc-genefilter-dummy' in '/<<BUILDDIR>>/resolver-3CM8oY/apt_archive/sbuild-build-depends-r-bioc-genefilter-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genefilter-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ Packages [631 B]
Fetched 2507 B in 0s (13.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-genefilter build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd libperl5.26 libsasl2-modules perl-modules-5.26
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-8 dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core g++ g++-8 gcc gcc-7-base gcc-8
gcc-8-base gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0
libbz2-dev libcairo2 libcc1-0 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran4
libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgomp1 libgraphite2-3
libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
libharfbuzz0b libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev
liblapack3 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev
libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libstdc++-8-dev libstdc++6
libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool
libubsan1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
libxt6 littler m4 man-db mime-support pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal r-base-core r-base-dev r-bioc-annotate
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-iranges
r-bioc-s4vectors r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-blob r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler
r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-pkgconfig
r-cran-pkgkitten r-cran-prettyunits r-cran-rcpp r-cran-rcurl r-cran-rsqlite
r-cran-survival r-cran-xml r-cran-xtable ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cpp-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg
libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg
libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils icu-doc liblzma-doc
ncurses-doc readline-doc libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python3.6-venv python3.6-doc binfmt-support ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-bioc-genefilter r-bioc-biostrings r-bioc-go.db r-cran-runit r-bioc-graph
r-cran-knitr r-bioc-genomicranges r-bioc-rsamtools r-bioc-affy r-bioc-deseq2
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-summarizedexperiment
r-bioc-delayedarray r-bioc-shortread r-cran-data.table libgdal-dev
r-cran-pillar r-cran-rmysql r-cran-getopt r-cran-httr r-cran-testthat
r-cran-inline r-cran-rmarkdown r-cran-spdep r-cran-plm r-cran-zoo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-bioc-go.db r-cran-runit
r-bioc-xvector r-bioc-genomicranges r-cran-testthat r-cran-crayon
r-cran-dbitest libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools
intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support
pkg-config po-debconf python3 python3-distutils python3-lib2to3
python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors r-cran-assertthat r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-dbi r-cran-digest r-cran-lattice
r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-pkgconfig
r-cran-pkgkitten r-cran-prettyunits r-cran-rcpp r-cran-rcurl r-cran-rsqlite
r-cran-survival r-cran-xml r-cran-xtable
sbuild-build-depends-r-bioc-genefilter-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-8 g++ g++-8 gcc gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0
libgcc-8-dev libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
16 upgraded, 165 newly installed, 0 to remove and 20 not upgraded.
Need to get 124 MB/136 MB of archives.
After this operation, 318 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3CM8oY/apt_archive ./ sbuild-build-depends-r-bioc-genefilter-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-9+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-9+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-9+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-9+rpi1 [64.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-9+rpi1 [8096 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-9+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-9+rpi1 [5474 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-9+rpi1 [30.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-9+rpi1 [5942 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-9+rpi1 [5847 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-9+rpi1 [598 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-9+rpi1 [1564 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-9+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf g++ armhf 4:8.2.0-2+rpi1 [1628 B]
Get:41 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:8.2.0-2+rpi1 [5196 B]
Get:42 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:8.2.0-2+rpi1 [19.5 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:96 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.9.0-1+rpi1 [650 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.9.0-1+rpi1 [657 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1+rpi1 [665 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.9.0-1+rpi1 [944 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:127 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.5-1 [301 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.5-1 [13.4 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-1 [644 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.42.0-1 [2215 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1+b1 [1799 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.12-1 [2130 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi all 1.0.0-2 [789 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-14-1 [218 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.1-2 [25.0 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.18-1 [133 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1 [3356 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.1.1-2+b2 [763 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.44.0-1 [4629 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.16-1 [1938 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-3-1 [737 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.43-1-1 [4624 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up cpp-8 (8.2.0-9+rpi1) ...
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Setting up libatomic1:armhf (8.2.0-9+rpi1) ...
Setting up cpp (4:8.2.0-2+rpi1) ...
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Setting up libbz2-dev:armhf (1.0.6-9) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libnghttp2-14:armhf (1.34.0-1) ...
Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libfile-which-perl (1.22-1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpsl5:armhf (0.20.2-2) ...
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Setting up gettext-base (0.19.8.1-8) ...
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Running in chroot, ignoring request.
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Creating config file /etc/papersize with new version
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Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-6) ...
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Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up gcc (4:8.2.0-2+rpi1) ...
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Setting up g++ (4:8.2.0-2+rpi1) ...
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-1) ...
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Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libharfbuzz-icu0:armhf (1.9.0-1+rpi1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-littler (0.3.5-1) ...
Setting up littler (0.3.5-1) ...
Setting up r-bioc-biocgenerics (0.28.0-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up r-cran-assertthat (0.2.0-2) ...
Setting up r-bioc-biobase (2.42.0-1) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-cran-dbi (1.0.0-2) ...
Setting up r-cran-pkgkitten (0.1.4-2) ...
Setting up r-cran-rcpp (1.0.0-1) ...
Setting up icu-devtools (60.2-6) ...
Setting up r-cran-rcurl (1.95-4.11-1) ...
Setting up r-cran-digest (0.6.18-1) ...
Setting up r-cran-xtable (1:1.8-3-1) ...
Setting up r-cran-bit (1.1-14-1) ...
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Setting up r-cran-pkgconfig (2.0.2-1) ...
Setting up r-cran-memoise (1.1.0-2) ...
Setting up r-bioc-s4vectors (0.18.3-1+b1) ...
Setting up r-cran-bit64 (0.9-7-3) ...
Setting up r-cran-xml (3.98-1.16-1) ...
Setting up gettext (0.19.8.1-8) ...
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-prettyunits (1.0.2-3) ...
Setting up libicu-dev (60.2-6) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
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Setting up libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Setting up r-cran-rsqlite (2.1.1-2+b2) ...
Setting up r-bioc-iranges (2.14.12-1) ...
Setting up po-debconf (1.0.20) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-bioc-annotationdbi (1.44.0-1) ...
Setting up r-cran-survival (2.43-1-1) ...
Setting up debhelper (11.5.3) ...
Setting up dh-r (20181101) ...
Setting up r-bioc-annotate (1.60.0+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-genefilter-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-9+rpi1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_1.9.0-1+rpi1 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-5 init-system-helpers_1.55 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-7+rpi1 libblas-dev_3.8.0-1+b1 libblas3_3.8.0-1+b1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.5-1 libcryptsetup4_2:1.7.5-1 libcurl4_7.61.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.45.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.1-2 libfreetype6_2.8.1-2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18.1-1 libgdbm3_1.8.3-14 libgdbm6_1.18.1-1 libgfortran-8-dev_8.2.0-9+rpi1 libgfortran4_7.3.0-19 libgfortran5_8.2.0-9+rpi1 libgirepository-1.0-1_1.58.0-1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16.1-1 libharfbuzz-dev_1.9.0-1+rpi1 libharfbuzz-gobject0_1.9.0-1+rpi1 libharfbuzz-icu0_1.9.0-1+rpi1 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_60.2-6 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.1-2 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libnss-systemd_239-10+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libswitch-perl_2.17-2 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 littler_0.3.5-1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-bioc-annotate_1.60.0+dfsg-1 r-bioc-annotationdbi_1.44.0-1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-iranges_2.14.12-1 r-bioc-s4vectors_0.18.3-1+b1 r-cran-assertthat_0.2.0-2 r-cran-bit_1.1-14-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.1.1-2 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.18-1 r-cran-lattice_0.20-38-1 r-cran-littler_0.3.5-1 r-cran-magrittr_1.5-5 r-cran-matrix_1.2-15-1 r-cran-memoise_1.1.0-2 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-prettyunits_1.0.2-3 r-cran-rcpp_1.0.0-1 r-cran-rcurl_1.95-4.11-1 r-cran-rsqlite_2.1.1-2+b2 r-cran-survival_2.43-1-1 r-cran-xml_3.98-1.16-1 r-cran-xtable_1:1.8-3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genefilter-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-10+rpi1 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 10 20:50:19 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-genefilter_1.64.0-1.dsc
dpkg-source: info: extracting r-bioc-genefilter in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-genefilter_1.64.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genefilter_1.64.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a7abc734-e196-4d4d-9f11-650f593cc565
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-genefilter
dpkg-buildpackage: info: source version 1.64.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: class
I: R Package: genefilter Version: 1.64.0
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sat, 10 Nov 2018 21:40:11 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 10 Nov 2018 21:40:11 +0100'"
* installing *source* package 'genefilter' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c half_range_mode.cpp -o half_range_mode.o
In file included from /usr/include/c++/8/vector:69,
from half_range_mode.cpp:3:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'double half_range_mode(double*, double*, double, int)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nd.c -o nd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pAUC.c -o pAUC.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowPAUCs.c -o rowPAUCs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowttests.c -o rowttests.o
gfortran -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -c ttest.f -o ttest.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-genefilter/usr/lib/R/site-library/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genefilter)
I: Using r-cran-class for Recommends:class
W: Cannot find a debian package for Suggests:hgu95av2.db
W: Cannot find a debian package for Suggests:tkWidgets
W: Cannot find a debian package for Suggests:ALL
W: Cannot find a debian package for Suggests:ROC
W: Cannot find a debian package for Suggests:DESeq
W: Cannot find a debian package for Suggests:pasilla
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.42)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi
I: Using r-bioc-annotate for Imports:annotate
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-cran-survival for Imports:survival
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-genefilter/usr/lib/R/site-library/genefilter/libs/genefilter.so was not linked against libgfortran.so.5 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genefilter' in '../r-bioc-genefilter_1.64.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-genefilter-dbgsym' in '../r-bioc-genefilter-dbgsym_1.64.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-genefilter_1.64.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2018-11-16T05:10:20Z
Finished
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I: Built successfully
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r-bioc-genefilter_1.64.0-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Sat, 10 Nov 2018 21:40:11 +0100
Source: r-bioc-genefilter
Binary: r-bioc-genefilter
Architecture: armhf
Version: 1.64.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-genefilter - methods for filtering genes from microarray experiments
Changes:
r-bioc-genefilter (1.64.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/copyright
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r-bioc-genefilter-dbgsym_1.64.0-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 52768 bytes: control archive=544 bytes.
405 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-genefilter-dbgsym
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Priority: optional
Description: debug symbols for r-bioc-genefilter
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r-bioc-genefilter_1.64.0-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
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768 bytes, 14 lines control
4765 bytes, 54 lines md5sums
Package: r-bioc-genefilter
Version: 1.64.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1974
Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-s4vectors (>= 0.9.42), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), libstdc++6 (>= 4.3.0)
Recommends: r-cran-class
Suggests: r-cran-rcolorbrewer, r-cran-knitr
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/genefilter/
Description: methods for filtering genes from microarray experiments
This BioConductor module provides methods for filtering genes from microarray
experiments. It contains some basic functions for filtering genes.
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 6028
Build-Time: 46
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 540
Job: r-bioc-genefilter_1.64.0-1
Machine Architecture: armhf
Package: r-bioc-genefilter
Package-Time: 602
Source-Version: 1.64.0-1
Space: 6028
Status: successful
Version: 1.64.0-1
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Finished at 2018-11-16T05:10:20Z
Build needed 00:10:02, 6028k disk space