r-bioc-dirichletmultinomial →
1.36.0-1+b1 →
armhf → 2021-12-09 09:39:37
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+=================================================================================+
| r-bioc-dirichletmultinomial 1.36.0-1+b1 (armhf) Thu, 09 Dec 2021 09:23:04 +0000 |
+=================================================================================+
Package: r-bioc-dirichletmultinomial
Version: 1.36.0-1+b1
Source Version: 1.36.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-2243b2e4-dfce-4881-b129-e7d1ff418124' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-E4w1lx/resolver-ZnhvA3' with '<<RESOLVERDIR>>'
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| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.1 MB in 10s (2556 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-dirichletmultinomial' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 482 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-dirichletmultinomial 1.36.0-1 (dsc) [2283 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-dirichletmultinomial 1.36.0-1 (tar) [477 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-dirichletmultinomial 1.36.0-1 (diff) [2588 B]
Fetched 482 kB in 0s (2132 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-E4w1lx/r-bioc-dirichletmultinomial-1.36.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-E4w1lx' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [495 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bzip2
ca-certificates cpp-11 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core g++-11 gcc-11 gcc-11-base gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libasan6 libatomic1 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-1.0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgcc-s1 libgfortran-11-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libstdc++-11-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libubsan1 libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors
ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bzip2-doc gcc-11-locales debtags
dh-make postgresql-client-common gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff
liblapack-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc
libstdc++-11-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-bioc-xvector r-bioc-genomicalignments r-bioc-genomicfeatures r-cran-runit
r-bioc-biocstyle r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread
r-bioc-graph r-cran-data.table
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db
openssl pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors sbuild-build-depends-main-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libbz2-1.0
libcc1-0 libgcc-11-dev libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6
libubsan1
15 upgraded, 174 newly installed, 0 to remove and 0 not upgraded.
Need to get 127 MB of archives.
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Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-12+rpi1 [88.1 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-12+rpi1 [8184 B]
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Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
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Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
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Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
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Get:29 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
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Get:31 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
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Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.1-1 [26.5 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.1-1 [15.6 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
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Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
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Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
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Get:66 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
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Get:89 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.1.2-1 [25.4 MB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-12+rpi1 [280 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-12+rpi1 [7571 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-1 [113 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-1 [2872 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-1 [79.8 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3-1 [290 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3-1 [932 B]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-3 [200 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.39-3 [190 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.39-3 [51.8 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.39-3 [629 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.1.2-1 [4484 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.35-1 [80.5 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.59-1 [60.8 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1 [803 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.79.1-2 [317 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-3 [958 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.40.0-1 [587 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.32.3-1 [2066 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.28.0-1 [2218 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking gcc-11 (11.2.0-12+rpi1) over (11.2.0-10+rpi1) ...
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Setting up libstdc++6:armhf (11.2.0-12+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
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Setting up libbz2-1.0:armhf (1.0.8-5) ...
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Preparing to unpack .../000-libmagic-mgc_1%3a5.41-2_armhf.deb ...
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Setting up libexpat1:armhf (2.4.1-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
Setting up libpipeline1:armhf (1.5.4-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up cpp-11 (11.2.0-12+rpi1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-4) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-2) ...
Setting up libgslcblas0:armhf (2.7.1+dfsg-3) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.70.2-1) ...
No schema files found: doing nothing.
Setting up libscalar-list-utils-perl (1:1.59-1) ...
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up libgsl27:armhf (2.7.1+dfsg-3) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.41-2) ...
Setting up libgomp1:armhf (11.2.0-12+rpi1) ...
Setting up bzip2 (1.0.8-5) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.39-3) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up libasan6:armhf (11.2.0-12+rpi1) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libpcre2-32-0:armhf (10.39-3) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3-1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up libatomic1:armhf (11.2.0-12+rpi1) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-4) ...
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Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up icu-devtools (67.1-7) ...
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Setting up libgfortran5:armhf (11.2.0-12+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up libubsan1:armhf (11.2.0-12+rpi1) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libpcre2-posix3:armhf (10.39-3) ...
Setting up libgcc-11-dev:armhf (11.2.0-12+rpi1) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-4.1) ...
Setting up libdevel-globaldestruction-perl (0.14-1.1) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up openssl (1.1.1l-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (11.2.0-12+rpi1) ...
Setting up liburi-perl (5.10-1) ...
Setting up libblas-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.1-1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3-1) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libgsl-dev (2.7.1+dfsg-3) ...
Setting up libpcre2-dev:armhf (10.39-3) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libgfortran-11-dev:armhf (11.2.0-12+rpi1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.79.1-2) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-4.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up liblapack-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-12+rpi1) ...
Setting up dh-strip-nondeterminism (1.12.1-1) ...
Setting up dwz (0.14-1) ...
Setting up gcc-11 (11.2.0-12+rpi1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libncurses5-dev:armhf (6.3-1) ...
Setting up libcurl4:armhf (7.79.1-2) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.35-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up g++-11 (11.2.0-12+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up gfortran-11 (11.2.0-12+rpi1) ...
Setting up xauth (1:1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libclass-load-perl (0.25-1) ...
Setting up r-base-core (4.1.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libb-hooks-endofscope-perl (0.25-1) ...
Setting up r-bioc-biocgenerics (0.40.0-1) ...
Setting up r-base-dev (4.1.2-1) ...
Setting up libmoose-perl:armhf (2.2200-1) ...
Setting up r-bioc-s4vectors (0.32.3-1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-bioc-iranges (2.28.0-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37-7+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-12+rpi1 gcc-11_11.2.0-12+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-12+rpi1 libstdc++6_11.2.0-12+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-5 binutils_2.37-7+rpi1 binutils-arm-linux-gnueabihf_2.37-7+rpi1 binutils-common_2.37-7+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20210119 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-12+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-12+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-12+rpi1 gcc-11-base_11.2.0-12+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.2.0-12+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libasan6_11.2.0-12+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-12+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libb-hooks-endofscope-perl_0.25-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-7+rpi1 libblas-dev_3.10.0-1 libblas3_3.10.0-1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-12+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-7+rpi1 libctf0_2.37-7+rpi1 libcurl3-gnutls_7.79.1-2 libcurl4_7.79.1-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.186-1 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.1-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.11.0+dfsg-1 libfribidi0_1.0.8-2 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libpcre2-dev_10.39-3 libpcre2-posix3_10.39-3 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libreadline-dev_8.1-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libscalar-list-utils-perl_1:1.59-1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-12+rpi1 libstdc++6_11.2.0-12+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.3.0-2 libtimedate-perl_2.3300-2 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15 libtry-tiny-perl_0.31-1 libubsan1_11.2.0-12+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.10-1 libuuid1_2.37.2-4 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 openssl_1.1.1l-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.2-1 r-base-dev_4.1.2-1 r-bioc-biocgenerics_0.40.0-1 r-bioc-iranges_2.28.0-1 r-bioc-s4vectors_0.32.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-4 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
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Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-dirichletmultinomial
Binary: r-bioc-dirichletmultinomial
Architecture: any
Version: 1.36.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/DirichletMultinomial/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
Package-List:
r-bioc-dirichletmultinomial deb gnu-r optional arch=any
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Checksums-Sha256:
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45aca8e43eacd3aff2edf7ef4db2aeef517e6d71842445e2cdbf24040eb93daf 2588 r-bioc-dirichletmultinomial_1.36.0-1.debian.tar.xz
Files:
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ca708bebc022dd7b206e6c493d504a7b 2588 r-bioc-dirichletmultinomial_1.36.0-1.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Mdh9g61P/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 24 19:48:05 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dirichletmultinomial_1.36.0-1.dsc
dpkg-source: info: extracting r-bioc-dirichletmultinomial in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.36.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.36.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.36.0-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=1b2d35e96e094e0c905e1f5e00ab4580
JOURNAL_STREAM=8:29072680
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-2243b2e4-dfce-4881-b129-e7d1ff418124
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c183083
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-dirichletmultinomial
dpkg-buildpackage: info: source version 1.36.0-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-dirichletmultinomial/ -a -O--buildsystem=R
I: R Package: DirichletMultinomial Version: 1.36.0
I: Building using R version 4.1.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 09 Dec 2021 09:38:54 +0000
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 09 Dec 2021 09:38:54 +0000'"
* installing *source* package ‘DirichletMultinomial’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dirichlet_fit.c -o dirichlet_fit.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dirichlet_fit_main.c -o dirichlet_fit_main.o
gcc -std=gnu99 -std=gnu11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/00LOCK-r-bioc-dirichletmultinomial-1.36.0/00new/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DirichletMultinomial)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
I: Using r-bioc-s4vectors for Depends:S4Vectors
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
I: Using r-cran-xtable for Suggests:xtable
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: BioConductor API version: r-api-bioc-3.14
I: Use r-bioc-dirichletmultinomial as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-dirichletmultinomial-dbgsym' in '../r-bioc-dirichletmultinomial-dbgsym_1.36.0-1+b1_armhf.deb'.
dpkg-deb: building package 'r-bioc-dirichletmultinomial' in '../r-bioc-dirichletmultinomial_1.36.0-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../r-bioc-dirichletmultinomial_1.36.0-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-12-09T09:39:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-dirichletmultinomial_1.36.0-1+b1_armhf.changes:
------------------------------------------------------
Format: 1.8
Date: Thu, 09 Dec 2021 09:38:54 +0000
Source: r-bioc-dirichletmultinomial (1.36.0-1)
Binary: r-bioc-dirichletmultinomial r-bioc-dirichletmultinomial-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.36.0-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Raspbian pi4 based autobuilder <root@raspbian.org>
Description:
r-bioc-dirichletmultinomial - Dirichlet-Multinomial Mixture Model Machine Learning for Microbio
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+------------------------------------------------------------------------------+
| Package contents |
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r-bioc-dirichletmultinomial-dbgsym_1.36.0-1+b1_armhf.deb
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size 22992 bytes: control archive=552 bytes.
462 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-dirichletmultinomial-dbgsym
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r-bioc-dirichletmultinomial_1.36.0-1+b1_armhf.deb
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Package: r-bioc-dirichletmultinomial
Source: r-bioc-dirichletmultinomial (1.36.0-1)
Version: 1.36.0-1+b1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 821
Depends: r-base-core (>= 4.1.2-1), r-api-4.0, r-api-bioc-3.14, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libc6 (>= 2.29), libgsl27 (>= 2.7.1)
Suggests: r-cran-lattice, r-cran-mass, r-cran-rcolorbrewer, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DirichletMultinomial/
Description: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Dirichlet-multinomial mixture models can be used to describe variability
in microbial metagenomic data. This package is an interface to code
originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE.
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 2364
Build-Time: 38
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 919
Job: r-bioc-dirichletmultinomial_1.36.0-1
Machine Architecture: armhf
Package: r-bioc-dirichletmultinomial
Package-Time: 988
Source-Version: 1.36.0-1
Space: 2364
Status: successful
Version: 1.36.0-1+b1
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Finished at 2021-12-09T09:39:32Z
Build needed 00:16:28, 2364k disk space