Raspbian Package Auto-Building

Build log for r-bioc-dirichletmultinomial (1.24.0-1) on armhf

r-bioc-dirichletmultinomial1.24.0-1armhf → 2018-11-16 06:36:30

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| r-bioc-dirichletmultinomial 1.24.0-1 (armhf) Fri, 16 Nov 2018 06:25:41 +0000 |
+==============================================================================+

Package: r-bioc-dirichletmultinomial
Version: 1.24.0-1
Source Version: 1.24.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7ff3b98f-97ee-4d84-a444-ad658e4c7a16' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 8s (2858 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-dirichletmultinomial' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 414 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.24.0-1 (dsc) [2278 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.24.0-1 (tar) [409 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.24.0-1 (diff) [2160 B]
Fetched 414 kB in 0s (2690 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-dTvlhW/r-bioc-dirichletmultinomial-1.24.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-dTvlhW' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-70KuFB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-70KuFB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-70KuFB/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
  libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-dirichletmultinomial-dummy' in '/<<BUILDDIR>>/resolver-70KuFB/apt_archive/sbuild-build-depends-r-bioc-dirichletmultinomial-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-dirichletmultinomial-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ Packages [628 B]
Fetched 2508 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-dirichletmultinomial build dependencies (apt-based resolver)
---------------------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
  libnss-systemd libpam-systemd libperl5.26 libsasl2-modules perl-modules-5.26
  systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-8 dctrl-tools
  debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core g++ g++-8 gcc gcc-7-base gcc-8
  gcc-8-base gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
  gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0
  libbz2-dev libcairo2 libcc1-0 libcroco3 libcurl4 libdatrie1 libelf1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran4
  libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgomp1 libgraphite2-3
  libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev
  libicu-le-hb-dev libicu-le-hb0 libicu60 libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblzma-dev libmagic-mgc
  libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.6-minimal
  libpython3.6-stdlib libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1
  libstdc++-8-dev libstdc++6 libswitch-perl libtcl8.6 libthai-data libthai0
  libtiff5 libtk8.6 libtool libubsan1 libwebp6 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
  po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
  python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
  r-bioc-iranges r-bioc-s4vectors ucf unzip x11-common xauth xdg-utils zip
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cpp-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
  gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg
  libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg
  libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin
  | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils gsl-ref-psdoc
  | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc ncurses-doc
  readline-doc libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc
  apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python3.6-venv python3.6-doc binfmt-support ess r-doc-info
  | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-biobase r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi
  r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-summarizedexperiment r-cran-matrix
  r-bioc-delayedarray r-bioc-shortread r-bioc-graph r-cran-data.table
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
  shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
  libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-xvector
  r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
  gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools
  intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev
  libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
  libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgsl-dev
  libgsl23 libgslcblas0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
  libharfbuzz0b libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60
  libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev
  liblapack3 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev
  libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
  libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev
  librtmp1 libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
  po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
  python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
  r-bioc-iranges r-bioc-s4vectors
  sbuild-build-depends-r-bioc-dirichletmultinomial-dummy ucf unzip x11-common
  xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  cpp cpp-8 g++ g++-8 gcc gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0
  libgcc-8-dev libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
16 upgraded, 143 newly installed, 0 to remove and 20 not upgraded.
Need to get 106 MB/110 MB of archives.
After this operation, 271 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-70KuFB/apt_archive ./ sbuild-build-depends-r-bioc-dirichletmultinomial-dummy 0.invalid.0 [908 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-9+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-9+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-9+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-9+rpi1 [64.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-9+rpi1 [8096 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-9+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-9+rpi1 [5474 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-9+rpi1 [30.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-9+rpi1 [5942 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-9+rpi1 [5847 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-9+rpi1 [598 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-9+rpi1 [1564 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-9+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf g++ armhf 4:8.2.0-2+rpi1 [1628 B]
Get:41 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:8.2.0-2+rpi1 [5196 B]
Get:42 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:8.2.0-2+rpi1 [19.5 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:104 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.9.0-1+rpi1 [650 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.9.0-1+rpi1 [657 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1+rpi1 [665 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.9.0-1+rpi1 [944 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:131 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-5 [78.8 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-5 [703 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-5 [894 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-1 [644 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1+b1 [1799 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.12-1 [2130 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libgcc1:armhf (1:8.2.0-9+rpi1) ...
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Unpacking gcc-8 (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
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Setting up libstdc++6:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.22.3-10) ...
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Unpacking libpython3.6-minimal:armhf (3.6.7-1) ...
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Setting up python3.6-minimal (3.6.7-1) ...
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Setting up libasan5:armhf (8.2.0-9+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-9+rpi1) ...
Setting up libgraphite2-dev:armhf (1.3.12-1) ...
Setting up libx11-data (2:1.6.7-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.45.0-1) ...
Setting up libubsan1:armhf (8.2.0-9+rpi1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...

Creating config file /etc/papersize with new version
Setting up libpython3.6-stdlib:armhf (3.6.7-1) ...
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.7-1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libgsl23:armhf (2.5+dfsg-5) ...
Setting up libgsl-dev (2.5+dfsg-5) ...
Setting up libcurl4:armhf (7.61.0-1) ...
Setting up libharfbuzz0b:armhf (1.9.0-1+rpi1) ...
Setting up libtiff5:armhf (4.0.9+git181026-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.28-1) ...
Setting up file (1:5.34-2) ...
Setting up libncurses5-dev:armhf (6.1+20181013-1) ...
Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.4-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libxcb1:armhf (1.13.1-1) ...
Setting up libharfbuzz-gobject0:armhf (1.9.0-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.6.7-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-1) ...
Setting up python3 (3.6.7-1) ...
Setting up libblas-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gcc-8 (8.2.0-9+rpi1) ...
Setting up g++-8 (8.2.0-9+rpi1) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.9.0-1+rpi1) ...
Setting up libxcb-shm0:armhf (1.13.1-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-6) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.58.1-2) ...
Setting up gfortran-8 (8.2.0-9+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up gcc (4:8.2.0-2+rpi1) ...
Setting up libglib2.0-dev:armhf (2.58.1-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-3) ...
Setting up g++ (4:8.2.0-2+rpi1) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libharfbuzz-icu0:armhf (1.9.0-1+rpi1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.28.0-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up icu-devtools (60.2-6) ...
Setting up r-bioc-s4vectors (0.18.3-1+b1) ...
Setting up gettext (0.19.8.1-8) ...
Setting up libicu-dev (60.2-6) ...
Setting up r-base-dev (3.5.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Setting up r-bioc-iranges (2.14.12-1) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.5.3) ...
Setting up dh-r (20181101) ...
Setting up sbuild-build-depends-r-bioc-dirichletmultinomial-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-9+rpi1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_1.9.0-1+rpi1 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-5 init-system-helpers_1.55 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-7+rpi1 libblas-dev_3.8.0-1+b1 libblas3_3.8.0-1+b1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.5-1 libcryptsetup4_2:1.7.5-1 libcurl4_7.61.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.45.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.1-2 libfreetype6_2.8.1-2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18.1-1 libgdbm3_1.8.3-14 libgdbm6_1.18.1-1 libgfortran-8-dev_8.2.0-9+rpi1 libgfortran4_7.3.0-19 libgfortran5_8.2.0-9+rpi1 libgirepository-1.0-1_1.58.0-1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgsl-dev_2.5+dfsg-5 libgsl23_2.5+dfsg-5 libgslcblas0_2.5+dfsg-5 libgssapi-krb5-2_1.16.1-1 libharfbuzz-dev_1.9.0-1+rpi1 libharfbuzz-gobject0_1.9.0-1+rpi1 libharfbuzz-icu0_1.9.0-1+rpi1 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_60.2-6 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.1-2 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libnss-systemd_239-10+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libswitch-perl_2.17-2 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-iranges_2.14.12-1 r-bioc-s4vectors_0.18.3-1+b1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-dirichletmultinomial-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-10+rpi1 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 14 07:26:41 2018 UTC
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv:                issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dirichletmultinomial_1.24.0-1.dsc
dpkg-source: info: extracting r-bioc-dirichletmultinomial in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.24.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.24.0-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
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dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-dirichletmultinomial
dpkg-buildpackage: info: source version 1.24.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
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I: R Package: DirichletMultinomial Version: 1.24.0
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Wed, 14 Nov 2018 08:17:24 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 14 Nov 2018 08:17:24 +0100'"
* installing *source* package 'DirichletMultinomial' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dirichlet_fit.c -o dirichlet_fit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
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make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DirichletMultinomial)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
I: Using r-bioc-s4vectors for Depends:S4Vectors
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
I: Using r-cran-xtable for Suggests:xtable
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
   dh_install -a -O--buildsystem=R
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dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs/DirichletMultinomial.so was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=R
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dpkg-deb: building package 'r-bioc-dirichletmultinomial' in '../r-bioc-dirichletmultinomial_1.24.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-dirichletmultinomial-dbgsym' in '../r-bioc-dirichletmultinomial-dbgsym_1.24.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-dirichletmultinomial_1.24.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-16T06:36:28Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-dirichletmultinomial_1.24.0-1_armhf.changes:
---------------------------------------------------

Format: 1.8
Date: Wed, 14 Nov 2018 08:17:24 +0100
Source: r-bioc-dirichletmultinomial
Binary: r-bioc-dirichletmultinomial
Architecture: armhf
Version: 1.24.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 r-bioc-dirichletmultinomial - Dirichlet-Multinomial Mixture Model Machine Learning for Microbio
Changes:
 r-bioc-dirichletmultinomial (1.24.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.2.1
   * Remove trailing whitespace in debian/copyright
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-dirichletmultinomial-dbgsym_1.24.0-1_armhf.deb
-----------------------------------------------------

 new Debian package, version 2.0.
 size 26176 bytes: control archive=548 bytes.
     445 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-dirichletmultinomial-dbgsym
 Source: r-bioc-dirichletmultinomial
 Version: 1.24.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 40
 Depends: r-bioc-dirichletmultinomial (= 1.24.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-dirichletmultinomial
 Build-Ids: 4f2f3789ab15271f7fbcaee8b3b5873d2f56df6e

drwxr-xr-x root/root         0 2018-11-14 07:17 ./
drwxr-xr-x root/root         0 2018-11-14 07:17 ./usr/
drwxr-xr-x root/root         0 2018-11-14 07:17 ./usr/lib/
drwxr-xr-x root/root         0 2018-11-14 07:17 ./usr/lib/debug/
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-rw-r--r-- root/root     29884 2018-11-14 07:17 ./usr/lib/debug/.build-id/4f/2f3789ab15271f7fbcaee8b3b5873d2f56df6e.debug
drwxr-xr-x root/root         0 2018-11-14 07:17 ./usr/share/
drwxr-xr-x root/root         0 2018-11-14 07:17 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-11-14 07:17 ./usr/share/doc/r-bioc-dirichletmultinomial-dbgsym -> r-bioc-dirichletmultinomial


r-bioc-dirichletmultinomial_1.24.0-1_armhf.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 539316 bytes: control archive=1696 bytes.
     809 bytes,    14 lines      control              
    3177 bytes,    33 lines      md5sums              
 Package: r-bioc-dirichletmultinomial
 Version: 1.24.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 712
 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libc6 (>= 2.4), libgsl23 (>= 2.5), libgslcblas0 (>= 2.4)
 Suggests: r-cran-lattice, r-cran-mass, r-cran-rcolorbrewer, r-cran-xtable
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/DirichletMultinomial/
 Description: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
  Dirichlet-multinomial mixture models can be used to describe variability
  in microbial metagenomic data. This package is an interface to code
  originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE.

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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 2260
Build-Time: 27
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 603
Job: r-bioc-dirichletmultinomial_1.24.0-1
Machine Architecture: armhf
Package: r-bioc-dirichletmultinomial
Package-Time: 647
Source-Version: 1.24.0-1
Space: 2260
Status: successful
Version: 1.24.0-1
--------------------------------------------------------------------------------
Finished at 2018-11-16T06:36:28Z
Build needed 00:10:47, 2260k disk space