r-bioc-dirichletmultinomial →
1.22.0-2 →
armhf → 2018-07-15 13:18:34
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-dirichletmultinomial 1.22.0-2 (armhf) Sun, 15 Jul 2018 12:49:12 +0000 |
+==============================================================================+
Package: r-bioc-dirichletmultinomial
Version: 1.22.0-2
Source Version: 1.22.0-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-59802306-d28e-475a-921d-6384e19973c5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-dirichletmultinomial' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 414 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-2 (dsc) [2278 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-2 (tar) [409 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-2 (diff) [2068 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-IA1oT5/r-bioc-dirichletmultinomial-1.22.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-IA1oT5' with '<<BUILDDIR>>'
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| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
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dpkg-scanpackages: warning: Packages in archive but missing from override file:
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dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
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gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wU4EqO/apt_archive ./ InRelease
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W: GPG error: copy:/<<BUILDDIR>>/resolver-wU4EqO/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
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| Check architectures |
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Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-dirichletmultinomial-dummy' in '/<<BUILDDIR>>/resolver-wU4EqO/apt_archive/sbuild-build-depends-r-bioc-dirichletmultinomial-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-dirichletmultinomial-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wU4EqO/apt_archive ./ InRelease
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Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-wU4EqO/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-wU4EqO/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-dirichletmultinomial build dependencies (apt-based resolver)
---------------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
e2fsprogs-l10n libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext
gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0 libbz2-dev
libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
libgdal-dev libgdal20 libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev
libgeotiff2 libgfortran-7-dev libgfortran4 libgif-dev libgif7
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgsl-dev
libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libice6 libicu-dev libicu-le-hb-dev
libicu-le-hb0 libicu60 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjson-c-dev libk5crypto3 libkeyutils1 libkml-dev
libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1
libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libmariadbclient-dev
libmariadbclient-dev-compat libmariadbclient18 libminizip-dev libminizip1
libmpdec2 libncurses-dev libncurses5-dev libnetcdf-dev libnetcdf13
libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev
libopenjp2-7 libopenjp2-7-dev libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpoppler-dev libpoppler-private-dev libpoppler74 libpopt0 libpq-dev libpq5
libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-dev
libssh2-1 libsuperlu-dev libsuperlu5 libsz2 libtcl8.6 libthai-data libthai0
libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
libtool liburiparser-dev liburiparser1 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db
mime-support mysql-common odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors ucf unixodbc-dev unzip uuid-dev x11-common
xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff
libitpp-dev liblapack-doc libboost-doc libboost1.62-doc
libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev
libboost-coroutine1.62-dev libboost-date-time1.62-dev
libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
libglib2.0-doc libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html krb5-doc krb5-user libhdf4-doc hdf4-tools libhdf5-doc icu-doc
liblcms2-utils libtool-doc liblzma-doc ncurses-doc netcdf-bin netcdf-doc
libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin libfreetype6-dev
postgresql-doc-10 proj-bin readline-doc sqlite3-doc libsuperlu-doc tcl8.6
tk8.6 gcj-jdk libxerces-c-doc m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv
python3.6-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-bioc-genomicalignments
r-bioc-genomicfeatures r-bioc-summarizedexperiment r-cran-matrix
r-bioc-delayedarray r-bioc-shortread r-bioc-graph r-cran-data.table
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin
shared-mime-info xdg-user-dirs krb5-locales libpng-tools poppler-data
publicsuffix libmail-sendmail-perl r-recommended r-doc-html r-cran-runit
r-bioc-xvector r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext
gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0 libbz2-dev
libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
libgdal-dev libgdal20 libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev
libgeotiff2 libgfortran-7-dev libgfortran4 libgif-dev libgif7
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgsl-dev
libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libice6 libicu-dev libicu-le-hb-dev
libicu-le-hb0 libicu60 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjson-c-dev libk5crypto3 libkeyutils1 libkml-dev
libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1
libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libmariadbclient-dev
libmariadbclient-dev-compat libmariadbclient18 libminizip-dev libminizip1
libmpdec2 libncurses-dev libncurses5-dev libnetcdf-dev libnetcdf13
libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev
libopenjp2-7 libopenjp2-7-dev libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpoppler-dev libpoppler-private-dev libpoppler74 libpopt0 libpq-dev libpq5
libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-dev
libssh2-1 libsuperlu-dev libsuperlu5 libsz2 libtcl8.6 libthai-data libthai0
libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
libtool liburiparser-dev liburiparser1 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db
mime-support mysql-common odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors
sbuild-build-depends-r-bioc-dirichletmultinomial-dummy ucf unixodbc-dev
unzip uuid-dev x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 248 newly installed, 0 to remove and 38 not upgraded.
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Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
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Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
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Get:7 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
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Get:9 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-1 [131 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
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Get:13 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
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Get:24 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038 [67.8 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-2 [402 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.11-2 [73.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.2-2 [832 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf mysql-common all 5.8+1.0.4 [7276 B]
Get:58 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.29-6+b1 [685 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:63 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-2 [451 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-1 [107 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-1 [98.3 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.60.0-2 [281 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 0.19.7-3 [44.2 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-2 [168 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-2 [50.2 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.1-2 [159 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.1-2 [54.6 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.1-2 [44.5 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-6 [225 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-19 [232 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-19 [5459 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.3.0-3+rpi1 [1436 B]
Get:109 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20180210-4 [936 B]
Get:113 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.8.2-2 [619 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.8.2-2 [626 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [77.6 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [142 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.8.2-2 [633 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.11-2 [22.2 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.8.2-2 [919 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:143 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.21-1 [14.3 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf dh-r all 20180617 [32.9 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.1+dfsg-1 [731 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 1.0.2-1 [21.3 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libsz2 armhf 1.0.2-1 [6640 B]
Get:149 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.5.0+real-2+b2 [80.6 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libsuperlu5 armhf 5.2.1+dfsg1-3 [125 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libarmadillo8 armhf 1:8.400.0+dfsg-3 [83.7 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.5.0+real-2+b2 [87.0 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:8.400.0+dfsg-3 [344 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-6 [7004 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:161 http://172.17.0.1/private buster-staging/main armhf libcharls1 armhf 1.1.0+dfsg-2 [45.1 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-2 [21.6 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.60.0-2 [279 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.60.0-2 [352 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libdap25 armhf 3.19.1-2 [469 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libdapserver7v5 armhf 3.19.1-2 [122 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libdapclient6v5 armhf 3.19.1-2 [180 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.1 [91.3 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.19.1-2 [760 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-2 [36.5 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-2 [46.8 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.5-3 [123 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-1 [31.7 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-1 [30.2 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-3 [97.8 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-3 [425 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libgeos-3.6.2 armhf 3.6.2-1 [612 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libgeos-c1v5 armhf 3.6.2-1 [264 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.1.0-1 [7002 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.1.0-1 [182 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-2+b2 [66.2 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-2 [234 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libminizip1 armhf 1.1-8 [18.3 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.8.5-2 [34.8 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-5 [42.0 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-5 [147 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-5 [67.4 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-5 [44.5 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-5 [21.9 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-5 [28.5 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-1 [344 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-3 [194 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.3.0-1 [139 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-2 [117 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.19-3+rpi1 [90.0 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.38-1 [935 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libpoppler74 armhf 0.63.0-2 [1225 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 10.4-2 [148 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libqhull7 armhf 2015.2-4 [175 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libspatialite7 armhf 4.3.0a-5+b2 [1231 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.1+debian-2+b2 [710 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.1+dfsg-1 [4860 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.6.2-1 [282 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libjbig-dev armhf 2.1-3.1+b2 [27.7 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.9-6 [100 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libtiff5-dev armhf 4.0.9-6 [337 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.9-6 [96.4 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-2+b2 [93.5 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-1 [80.5 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-2 [310 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.8.5-2 [18.0 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-5 [940 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.1.0-1 [225 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-3 [38.1 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.63.0-2 [22.5 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.63.0-2 [187 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 10.4-2 [145 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.1+debian-2+b2 [1486 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.4+dfsg-3+rpi1 [209 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.1+dfsg-1 [6228 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-4 [77.6 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-4 [697 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-4 [885 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.26.0-3 [641 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1 [1801 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.10-1+b1 [2127 kB]
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Setting up libminizip1:armhf (1.1-8) ...
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Setting up libaec0:armhf (1.0.2-1) ...
Setting up libbz2-dev:armhf (1.0.6-8.1) ...
Setting up libopenjp2-7:armhf (2.3.0-1) ...
Setting up libqhull7:armhf (2015.2-4) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libnghttp2-14:armhf (1.32.0-1) ...
Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libfile-which-perl (1.21-1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-6) ...
Setting up libsqlite3-dev:armhf (3.24.0-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up liblcms2-2:armhf (2.9-2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpsl5:armhf (0.20.2-1) ...
Setting up libcharls1:armhf (1.1.0+dfsg-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up libgeos-3.6.2:armhf (3.6.2-1) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.56.1-2) ...
No schema files found: doing nothing.
Setting up mysql-common (5.8+1.0.4) ...
update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
Setting up unzip (6.0-21) ...
Setting up uuid-dev:armhf (2.32-0.1) ...
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Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up libtiff5:armhf (4.0.9-6) ...
Setting up gettext-base (0.19.8.1-6) ...
Setting up libgif7:armhf (5.1.4-3) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up libmariadbclient18:armhf (1:10.1.29-6+b1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
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Setting up libbsd0:armhf (0.9.1-1) ...
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Setting up ucf (3.0038) ...
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Setting up gdal-data (2.3.1+dfsg-1) ...
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Setting up libpixman-1-0:armhf (0.34.0-2) ...
Setting up libblas3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up gir1.2-glib-2.0:armhf (1.56.1-1) ...
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Processing triggers for libc-bin (2.27-3+rpi1) ...
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Processing triggers for systemd (238-4) ...
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Setting up libjson-c-dev:armhf (0.12.1-1.3) ...
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Setting up libboost-dev:armhf (1.62.0.1+b8) ...
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Setting up libthai-data (0.1.27-2) ...
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Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libhdf4-0-alt (4.2.13-2) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libgslcblas0:armhf (2.5+dfsg-4) ...
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Setting up libfyba-dev:armhf (4.1.1-3) ...
Setting up libgraphite2-dev:armhf (1.3.11-2) ...
Setting up hdf5-helpers (1.10.0-patch1+docs-4+b2) ...
Setting up libqhull-r7:armhf (2015.2-4) ...
Setting up libx11-data (2:1.6.5-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up liburiparser1:armhf (0.8.5-2) ...
Setting up libsz2:armhf (1.0.2-1) ...
Setting up proj-data (5.1.0-1) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libfreexl-dev:armhf (1.0.5-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up gfortran (4:7.3.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libmariadbclient-dev (1:10.1.29-6+b1) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up fontconfig-config (2.13.0-5) ...
Setting up python3.6 (3.6.6-1) ...
Setting up libodbc1:armhf (2.3.6-0.1) ...
Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up libltdl-dev:armhf (2.4.6-2.1) ...
Setting up libgsl23:armhf (2.5+dfsg-4) ...
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libgsl-dev (2.5+dfsg-4) ...
Setting up libmariadbclient-dev-compat:armhf (1:10.1.29-6+b1) ...
Setting up libgif-dev (5.1.4-3) ...
Setting up libepsilon-dev:armhf (0.9.2+dfsg-2) ...
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtiff5-dev:armhf (4.0.9-6) ...
Setting up libaec-dev:armhf (1.0.2-1) ...
Setting up libnss3:armhf (2:3.38-1) ...
Setting up libproj13:armhf (5.1.0-1) ...
Setting up libgeos-dev (3.6.2-1) ...
Setting up libharfbuzz0b:armhf (1.8.2-2) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.27-2) ...
Setting up file (1:5.33-3) ...
Setting up libsuperlu5:armhf (5.2.1+dfsg1-3) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libkmlbase1:armhf (1.3.0-5) ...
Setting up libqhull-dev:armhf (2015.2-4) ...
Setting up libncurses5-dev:armhf (6.1+20180210-4) ...
Setting up libogdi3.2 (3.2.1+ds-3) ...
Setting up libkmlxsd1:armhf (1.3.0-5) ...
Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-3) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libgeotiff2:armhf (1.4.2-2+b2) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up libarpack2:armhf (3.5.0+real-2+b2) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up liburiparser-dev (0.8.5-2) ...
Setting up libkmldom1:armhf (1.3.0-5) ...
Setting up default-libmysqlclient-dev:armhf (1.0.4) ...
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libxcb1:armhf (1.13-1) ...
Setting up libharfbuzz-gobject0:armhf (1.8.2-2) ...
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2.1) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up libtiff-dev (4.0.9-6) ...
Setting up libfontconfig1:armhf (2.13.0-5) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libgeotiff-dev:armhf (1.4.2-2+b2) ...
Setting up libproj-dev:armhf (5.1.0-1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up libxcb-render0:armhf (1.13-1) ...
Setting up python3 (3.6.5-3) ...
Setting up libx11-6:armhf (2:1.6.5-1) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-4+b2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpoppler74:armhf (0.63.0-2) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libogdi3.2-dev (3.2.1+ds-3) ...
Setting up libwebp-dev:armhf (0.6.1-2) ...
Setting up libarmadillo8 (1:8.400.0+dfsg-3) ...
Setting up libkmlengine1:armhf (1.3.0-5) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.8.2-2) ...
Setting up libarpack2-dev:armhf (3.5.0+real-2+b2) ...
Setting up libxcb-shm0:armhf (1.13-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.6.6-1) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up fontconfig (2.13.0-5) ...
Regenerating fonts cache... done.
Setting up libarmadillo-dev (1:8.400.0+dfsg-3) ...
Setting up libpoppler-dev:armhf (0.63.0-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.56.1-2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libkmlconvenience1:armhf (1.3.0-5) ...
Setting up libglib2.0-dev:armhf (2.56.1-2) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpq5:armhf (10.4-2) ...
Setting up libkmlregionator1:armhf (1.3.0-5) ...
Setting up libpango-1.0-0:armhf (1.42.1-2) ...
Setting up libcairo2:armhf (1.15.10-3) ...
Setting up libpoppler-private-dev:armhf (0.63.0-2) ...
Setting up libpq-dev (10.4-2) ...
Setting up libcurl3-gnutls:armhf (7.60.0-2) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libcurl4:armhf (7.60.0-2) ...
Setting up libkml-dev:armhf (1.3.0-5) ...
Setting up libpangoft2-1.0-0:armhf (1.42.1-2) ...
Setting up libnetcdf13:armhf (1:4.6.1-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.60.0-2) ...
Setting up libnetcdf-dev (1:4.6.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.1-2) ...
Setting up libhdf4-alt-dev (4.2.13-2) ...
Setting up dh-autoreconf (19) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up libharfbuzz-icu0:armhf (1.8.2-2) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.26.0-3) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libspatialite7:armhf (4.3.0a-5+b2) ...
Setting up icu-devtools (60.2-6) ...
Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ...
Setting up libxerces-c3.2:armhf (3.2.1+debian-2+b2) ...
Setting up libdap25:armhf (3.19.1-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libicu-dev (60.2-6) ...
Setting up r-base-dev (3.5.1-1) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7) ...
Setting up libdapclient6v5:armhf (3.19.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libdapserver7v5:armhf (3.19.1-2) ...
Setting up libharfbuzz-dev:armhf (1.8.2-2) ...
Setting up libxerces-c-dev (3.2.1+debian-2+b2) ...
Setting up libdap-dev:armhf (3.19.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libgdal20 (2.3.1+dfsg-1) ...
Setting up debhelper (11.3.5) ...
Setting up dh-r (20180617) ...
Setting up libgdal-dev (2.3.1+dfsg-1) ...
Setting up r-bioc-s4vectors (0.18.3-1) ...
Setting up r-bioc-iranges (2.14.10-1+b1) ...
Setting up sbuild-build-depends-r-bioc-dirichletmultinomial-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Processing triggers for systemd (238-4) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dctrl-tools_2.24-2 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20180617 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 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patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 proj-data_5.1.0-1 python3_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-bioc-biocgenerics_0.26.0-3 r-bioc-iranges_2.14.10-1+b1 r-bioc-s4vectors_0.18.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-dirichletmultinomial-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.32-0.1 uuid-dev_2.32-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jul 13 06:30:22 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dirichletmultinomial_1.22.0-2.dsc
dpkg-source: info: extracting r-bioc-dirichletmultinomial in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.22.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.22.0-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-59802306-d28e-475a-921d-6384e19973c5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-dirichletmultinomial
dpkg-buildpackage: info: source version 1.22.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-dirichletmultinomial-1.22.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
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dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: DirichletMultinomial Version: 1.22.0
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Thu, 12 Jul 2018 15:05:41 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 12 Jul 2018 15:05:41 +0200'"
* installing *source* package 'DirichletMultinomial' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dirichlet_fit.c -o dirichlet_fit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dirichlet_fit_main.c -o dirichlet_fit_main.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DirichletMultinomial)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
I: Using r-bioc-s4vectors for Depends:S4Vectors
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
I: Using r-cran-xtable for Suggests:xtable
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
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dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs/DirichletMultinomial.so was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-dirichletmultinomial-dbgsym' in '../r-bioc-dirichletmultinomial-dbgsym_1.22.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-dirichletmultinomial' in '../r-bioc-dirichletmultinomial_1.22.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-dirichletmultinomial_1.22.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-dirichletmultinomial-1.22.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-07-15T13:16:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-dirichletmultinomial_1.22.0-2_armhf.changes:
---------------------------------------------------
Format: 1.8
Date: Thu, 12 Jul 2018 15:05:41 +0200
Source: r-bioc-dirichletmultinomial
Binary: r-bioc-dirichletmultinomial
Architecture: armhf
Version: 1.22.0-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-dirichletmultinomial - Dirichlet-Multinomial Mixture Model Machine Learning for Microbio
Changes:
r-bioc-dirichletmultinomial (1.22.0-2) unstable; urgency=medium
.
* dh-update-R to update Build-Depends
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-dirichletmultinomial-dbgsym_1.22.0-2_armhf.deb
-----------------------------------------------------
new Debian package, version 2.0.
size 22680 bytes: control archive=548 bytes.
445 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-dirichletmultinomial-dbgsym
Source: r-bioc-dirichletmultinomial
Version: 1.22.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 36
Depends: r-bioc-dirichletmultinomial (= 1.22.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-dirichletmultinomial
Build-Ids: 2ee92dee6d89b8cfee4ede914e2da5b38d3f2948
drwxr-xr-x root/root 0 2018-07-12 13:05 ./
drwxr-xr-x root/root 0 2018-07-12 13:05 ./usr/
drwxr-xr-x root/root 0 2018-07-12 13:05 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-12 13:05 ./usr/lib/debug/
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drwxr-xr-x root/root 0 2018-07-12 13:05 ./usr/share/
drwxr-xr-x root/root 0 2018-07-12 13:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-12 13:05 ./usr/share/doc/r-bioc-dirichletmultinomial-dbgsym -> r-bioc-dirichletmultinomial
r-bioc-dirichletmultinomial_1.22.0-2_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 539036 bytes: control archive=1692 bytes.
809 bytes, 14 lines control
3177 bytes, 33 lines md5sums
Package: r-bioc-dirichletmultinomial
Version: 1.22.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 711
Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libc6 (>= 2.4), libgsl23 (>= 2.5), libgslcblas0 (>= 2.4)
Suggests: r-cran-lattice, r-cran-mass, r-cran-rcolorbrewer, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DirichletMultinomial/
Description: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Dirichlet-multinomial mixture models can be used to describe variability
in microbial metagenomic data. This package is an interface to code
originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE.
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-rw-r--r-- root/root 968 2018-07-12 13:05 ./usr/share/doc/r-bioc-dirichletmultinomial/copyright
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| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2080
Build-Time: 104
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1501
Job: r-bioc-dirichletmultinomial_1.22.0-2
Machine Architecture: armhf
Package: r-bioc-dirichletmultinomial
Package-Time: 1664
Source-Version: 1.22.0-2
Space: 2080
Status: successful
Version: 1.22.0-2
--------------------------------------------------------------------------------
Finished at 2018-07-15T13:16:56Z
Build needed 00:27:44, 2080k disc space