Build log for r-bioc-dirichletmultinomial (1.22.0-1) on armhf

r-bioc-dirichletmultinomial → 1.22.0-1 → armhf → 2018-06-14 04:36:46

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| r-bioc-dirichletmultinomial 1.22.0-1 (armhf) Thu, 14 Jun 2018 04:07:24 +0000 |
+==============================================================================+

Package: r-bioc-dirichletmultinomial
Version: 1.22.0-1
Source Version: 1.22.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-8d1e64b5-40af-4f54-93ea-133782373b63' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.4 MB in 29s (806 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-dirichletmultinomial' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-dirichletmultinomial.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 414 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-1 (dsc) [2278 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-1 (tar) [409 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-dirichletmultinomial 1.22.0-1 (diff) [2028 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-L8XOm1/r-bioc-dirichletmultinomial-1.22.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dirichletmultinomial-L8XOm1' with '<<BUILDDIR>>'

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| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-h7OV9M/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-h7OV9M/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-h7OV9M/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3251 B/s)
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Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biocgenerics, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-dirichletmultinomial-dummy' in '/<<BUILDDIR>>/resolver-h7OV9M/apt_archive/sbuild-build-depends-r-bioc-dirichletmultinomial-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-dirichletmultinomial-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ Packages [630 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-dirichletmultinomial build dependencies (apt-based resolver)
---------------------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
  libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-7 dctrl-tools
  debhelper default-libmysqlclient-dev dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core g++-7 gcc gcc-7 gcc-7-base gdal-data gettext gettext-base
  gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base
  hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
  libasan4 libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0
  libbz2-dev libcairo2 libcharls-dev libcharls1 libcilkrts5 libcroco3
  libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
  libdapclient6v5 libdapserver7v5 libdatrie1 libelf1 libepsilon-dev
  libepsilon1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
  libgcc-7-dev libgdal-dev libgdal20 libgeos-3.6.2 libgeos-c1v5 libgeos-dev
  libgeotiff-dev libgeotiff2 libgfortran-7-dev libgfortran4 libgif-dev libgif7
  libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgsl-dev
  libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
  libhdf5-cpp-100 libhdf5-dev libice6 libicu-dev libicu-le-hb-dev
  libicu-le-hb0 libicu60 libisl19 libjbig-dev libjbig0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libjson-c-dev libk5crypto3 libkeyutils1
  libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1
  libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev
  liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc
  libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
  libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
  libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
  libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler74
  libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
  libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
  libreadline-dev libreadline7 librtmp1 libsigsegv2 libsm6 libspatialite-dev
  libspatialite7 libsqlite3-0 libsqlite3-dev libssh2-1 libstdc++-7-dev
  libsuperlu-dev libsuperlu5 libsz2 libtcl8.6 libthai-data libthai0
  libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
  libtool libubsan0 liburiparser-dev liburiparser1 libwebp-dev libwebp6
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6
  libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
  m4 man-db mime-support mysql-common odbcinst odbcinst1debian2 pkg-config
  po-debconf proj-data python3 python3-distutils python3-lib2to3
  python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
  r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors ucf unixodbc-dev unzip
  uuid-dev x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cpp-doc gcc-7-locales debtags dh-make gcc-7-doc libstdc++6-7-dbg
  gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc
  libgfortran4-dbg libcoarrays-dev groff libitpp-dev liblapack-doc
  libboost-doc libboost1.62-doc libboost-atomic1.62-dev
  libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-filesystem1.62-dev libboost-graph1.62-dev
  libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
  libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
  libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-regex1.62-dev
  libboost-serialization1.62-dev libboost-signals1.62-dev
  libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
  libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
  libboost1.62-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc
  libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
  libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
  libglib2.0-doc libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
  | gsl-ref-html krb5-doc krb5-user libhdf4-doc hdf4-tools libhdf5-doc icu-doc
  liblcms2-utils libtool-doc liblzma-doc ncurses-doc netcdf-bin netcdf-doc
  libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin libfreetype6-dev
  postgresql-doc-10 proj-bin readline-doc sqlite3-doc libstdc++-7-doc
  libsuperlu-doc tcl8.6 tk8.6 gcj-jdk libxerces-c-doc m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv
  python3.6-venv python3.6-doc binfmt-support ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-biobase r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi
  r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-summarizedexperiment r-cran-matrix
  r-bioc-delayedarray r-bioc-shortread r-bioc-graph r-cran-data.table
Recommended packages:
  curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin shared-mime-info
  xdg-user-dirs krb5-locales libpng-tools poppler-data publicsuffix
  libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-xvector
  r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
  file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext
  gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
  groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
  libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0 libbz2-dev
  libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
  libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
  libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreexl-dev
  libfreexl1 libfribidi0 libfyba-dev libfyba0 libgdal-dev libgdal20
  libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2
  libgfortran-7-dev libgfortran4 libgif-dev libgif7 libgirepository-1.0-1
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
  libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23
  libgslcblas0 libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
  libhdf5-cpp-100 libhdf5-dev libice6 libicu-dev libicu-le-hb-dev
  libicu-le-hb0 libicu60 libisl19 libjbig-dev libjbig0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libjson-c-dev libk5crypto3 libkeyutils1
  libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1
  libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev
  liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc
  libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
  libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
  libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
  libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler74
  libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
  libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
  libreadline-dev librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7
  libsqlite3-dev libssh2-1 libsuperlu-dev libsuperlu5 libsz2 libtcl8.6
  libthai-data libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5
  libtimedate-perl libtk8.6 libtool liburiparser-dev liburiparser1 libwebp-dev
  libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2
  libxext6 libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6
  libzstd-dev m4 man-db mime-support mysql-common odbcinst odbcinst1debian2
  pkg-config po-debconf proj-data python3 python3-distutils python3-lib2to3
  python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
  r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors
  sbuild-build-depends-r-bioc-dirichletmultinomial-dummy ucf unixodbc-dev
  unzip uuid-dev x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  cpp cpp-7 g++-7 gcc gcc-7 gcc-7-base libasan4 libcilkrts5 libgcc-7-dev
  libreadline7 libsqlite3-0 libstdc++-7-dev libubsan0
13 upgraded, 247 newly installed, 0 to remove and 36 not upgraded.
Need to get 158 MB/169 MB of archives.
After this operation, 580 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h7OV9M/apt_archive ./ sbuild-build-depends-r-bioc-dirichletmultinomial-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.5-9 [565 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.5-9 [1374 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libreadline7 armhf 7.0-5 [130 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libsqlite3-0 armhf 3.24.0-1 [521 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.5-9 [1651 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.5-9 [229 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libisl19 armhf 0.19-1 [427 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.3.0-19 [5593 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.3.0-19 [5488 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.3.0-19 [5139 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.3.0-19 [301 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.3.0-19 [106 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.3.0-19 [35.2 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.3.0-19 [1506 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.3.0-19 [671 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.3.0-19 [187 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-2 [234 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-2 [106 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-2 [64.7 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:7.3.0-3+rpi1 [19.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:7.3.0-3+rpi1 [5192 B]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-2 [20.0 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-2 [12.0 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.2 [994 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:63 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.60.0-2 [281 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 0.19.7-2 [44.1 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.11-1 [34.6 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.0-1 [158 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.0-1 [53.2 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.0-1 [43.3 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-5 [224 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.0-5 [23.6 MB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-19 [232 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-19 [5459 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.3.0-3+rpi1 [1436 B]
Get:92 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20180210-4 [936 B]
Get:96 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.7.6-1+b1 [584 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.7.6-1+b1 [591 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [77.6 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [142 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.7.6-1+b1 [597 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5-4 [79.0 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5-4 [144 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.11-2 [22.2 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.7.6-1+b1 [879 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.0-5 [4484 B]
Get:121 http://172.17.0.1/private buster-staging/main armhf dh-r all 20180601 [32.0 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.0+dfsg-1 [729 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.5.0+real-2+b2 [80.6 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libarmadillo8 armhf 1:8.400.0+dfsg-3 [83.7 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.5.0+real-2+b2 [87.0 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:8.400.0+dfsg-3 [344 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5.1 [7003 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:135 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-2 [21.6 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.60.0-2 [279 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.60.0-2 [352 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.1 [91.3 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.19.1-2 [760 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-2 [46.8 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-1 [30.2 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-3 [425 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.1.0-1 [7002 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.1.0-1 [182 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.8.5-1 [34.7 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-1 [344 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.19-3+rpi1 [90.0 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.37.1-1 [933 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libpoppler74 armhf 0.63.0-2 [1225 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 10.4-2 [148 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.1+debian-2+b2 [710 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.0+dfsg-1 [4842 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.6.2-1 [282 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.9-5 [100 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libtiff5-dev armhf 4.0.9-5 [337 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.9-5 [96.3 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-2+b2 [93.5 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-1 [80.5 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-2 [310 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.8.5-1 [17.8 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-5 [940 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.1.0-1 [225 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-1+b1 [38.3 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.63.0-2 [22.5 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.63.0-2 [187 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 10.4-2 [145 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.1+debian-2+b2 [1486 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.4+dfsg-3+rpi1 [209 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.0+dfsg-1 [6211 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.4+dfsg-6 [75.1 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.4+dfsg-6 [681 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.4+dfsg-6 [863 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.26.0-3 [641 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.2-1+b1 [1802 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.10-1+b1 [2127 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 158 MB in 52s (3036 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15771 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
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Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-1) ...
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Setting up libminizip1:armhf (1.1-8) ...
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Setting up libaec0:armhf (1.0.2-1) ...
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Setting up libqhull7:armhf (2015.2-4) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.60-1) ...
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Setting up libsqlite3-dev:armhf (3.24.0-1) ...
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Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up fonts-dejavu-core (2.37-1) ...
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No schema files found: removed existing output file.
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update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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Creating config file /etc/papersize with new version
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Setting up libx11-6:armhf (2:1.6.5-1) ...
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Setting up libxt6:armhf (1:1.1.5-1) ...
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Setting up libboost-dev:armhf (1.62.0.1+b8) ...
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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Setting up libpango-1.0-0:armhf (1.42.0-1) ...
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Setting up libcairo2:armhf (1.15.10-3) ...
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Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
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Creating config file /etc/R/Renviron with new version
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Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libspatialite7:armhf (4.3.0a-5+b2) ...
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Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ...
Setting up libxerces-c3.2:armhf (3.2.1+debian-2+b2) ...
Setting up libdap25:armhf (3.19.1-2) ...
Setting up gettext (0.19.8.1-6) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
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Setting up libdap-dev:armhf (3.19.1-2) ...
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Setting up libgdal20 (2.3.0+dfsg-1) ...
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Setting up r-bioc-s4vectors (0.18.2-1+b1) ...
Setting up r-bioc-iranges (2.14.10-1+b1) ...
Setting up sbuild-build-depends-r-bioc-dirichletmultinomial-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-3+rpi1 linux-libc-dev_4.16.5-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-2 dbus-user-session_1.12.8-2 dctrl-tools_2.24-2 debconf_1.5.66 debhelper_11.3.2 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20180601 dh-strip-nondeterminism_0.041-2 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 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libtiff-dev_4.0.9-5 libtiff5_4.0.9-5 libtiff5-dev_4.0.9-5 libtiffxx5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtk8.6_8.6.8-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 liburiparser-dev_0.8.5-1 liburiparser1_0.8.5-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.1+debian-2+b2 libxerces-c3.2_3.2.1+debian-2+b2 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxml2-dev_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 libzstd-dev_1.3.4+dfsg-3+rpi1 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.5-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.60 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 mysql-common_5.8+1.0.4 nano_2.9.5-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1-1 netbase_5.4 odbcinst_2.3.6-0.1 odbcinst1debian2_2.3.6-0.1 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-5 perl-base_5.26.2-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-1 proj-data_5.1.0-1 python3_3.6.5-3 python3-distutils_3.6.5-4 python3-lib2to3_3.6.5-4 python3-minimal_3.6.5-3 python3.6_3.6.5-9 python3.6-minimal_3.6.5-9 r-base-core_3.5.0-5 r-base-dev_3.5.0-5 r-bioc-biocgenerics_0.26.0-3 r-bioc-iranges_2.14.10-1+b1 r-bioc-s4vectors_0.18.2-1+b1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-dirichletmultinomial-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.31.1-0.5 uuid-dev_2.32-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri May 18 19:29:10 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dirichletmultinomial_1.22.0-1.dsc
dpkg-source: info: extracting r-bioc-dirichletmultinomial in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.22.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-dirichletmultinomial_1.22.0-1.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-8d1e64b5-40af-4f54-93ea-133782373b63
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-dirichletmultinomial
dpkg-buildpackage: info: source version 1.22.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build r-bioc-dirichletmultinomial-1.22.0
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_testdir -O--buildsystem=R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build-arch
dh build-arch --buildsystem R
   dh_testdir -a -O--buildsystem=R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_installdirs -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R Package: DirichletMultinomial Version: 1.22.0
I: Building using R version 3.5.0-5
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Fri, 18 May 2018 21:18:45 +0200
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 18 May 2018 21:18:45 +0200'"
* installing *source* package 'DirichletMultinomial' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dirichlet_fit.c -o dirichlet_fit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm -L/usr/lib/R/lib -lR
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installing to /<<PKGBUILDDIR>>/debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs
** R
** data
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** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DirichletMultinomial)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
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Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
I: Using r-bioc-s4vectors for Depends:S4Vectors
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
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I: Using libgdal-dev for Imports:stats4
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-dirichletmultinomial/usr/lib/R/site-library/DirichletMultinomial/libs/DirichletMultinomial.so was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
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dpkg-deb: building package 'r-bioc-dirichletmultinomial' in '../r-bioc-dirichletmultinomial_1.22.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-dirichletmultinomial-dbgsym' in '../r-bioc-dirichletmultinomial-dbgsym_1.22.0-1_armhf.deb'.
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-06-14T04:36:37Z

Finished
--------

I: Built successfully

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| Post Build Chroot                                                            |
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| Changes                                                                      |
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r-bioc-dirichletmultinomial_1.22.0-1_armhf.changes:
---------------------------------------------------

Format: 1.8
Date: Fri, 18 May 2018 21:18:45 +0200
Source: r-bioc-dirichletmultinomial
Binary: r-bioc-dirichletmultinomial
Architecture: armhf
Version: 1.22.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-dirichletmultinomial - Dirichlet-Multinomial Mixture Model Machine Learning for Microbio
Closes: 899056
Changes:
 r-bioc-dirichletmultinomial (1.22.0-1) unstable; urgency=medium
 .
   * Initial release (closes: #899056)
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r-bioc-dirichletmultinomial-dbgsym_1.22.0-1_armhf.deb
-----------------------------------------------------

 new Debian package, version 2.0.
 size 22700 bytes: control archive=548 bytes.
     445 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-dirichletmultinomial-dbgsym
 Source: r-bioc-dirichletmultinomial
 Version: 1.22.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 36
 Depends: r-bioc-dirichletmultinomial (= 1.22.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-dirichletmultinomial
 Build-Ids: 9cc82926dad765030911581c993690adf80f9b3c

drwxr-xr-x root/root         0 2018-05-18 19:18 ./
drwxr-xr-x root/root         0 2018-05-18 19:18 ./usr/
drwxr-xr-x root/root         0 2018-05-18 19:18 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-18 19:18 ./usr/lib/debug/
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lrwxrwxrwx root/root         0 2018-05-18 19:18 ./usr/share/doc/r-bioc-dirichletmultinomial-dbgsym -> r-bioc-dirichletmultinomial


r-bioc-dirichletmultinomial_1.22.0-1_armhf.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 538788 bytes: control archive=1700 bytes.
     804 bytes,    14 lines      control              
    3177 bytes,    33 lines      md5sums              
 Package: r-bioc-dirichletmultinomial
 Version: 1.22.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 711
 Depends: r-base-core (>= 3.5.0-5), r-api-3.5, r-bioc-s4vectors, r-bioc-iranges, libgdal-dev, r-bioc-biocgenerics, libc6 (>= 2.4), libgsl23, libgslcblas0
 Suggests: r-cran-lattice, r-cran-mass, r-cran-rcolorbrewer, r-cran-xtable
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/DirichletMultinomial/
 Description: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
  Dirichlet-multinomial mixture models can be used to describe variability
  in microbial metagenomic data. This package is an interface to code
  originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE.

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Build Architecture: armhf
Build-Space: 2080
Build-Time: 102
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1598
Job: r-bioc-dirichletmultinomial_1.22.0-1
Machine Architecture: armhf
Package: r-bioc-dirichletmultinomial
Package-Time: 1753
Source-Version: 1.22.0-1
Space: 2080
Status: successful
Version: 1.22.0-1
--------------------------------------------------------------------------------
Finished at 2018-06-14T04:36:37Z
Build needed 00:29:13, 2080k disc space
Raspbian Package Auto-Building

Build log for r-bioc-dirichletmultinomial (1.22.0-1) on armhf
