r-bioc-deseq2 →
1.26.0+dfsg-1 →
armhf → 2019-11-18 05:25:55
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-deseq2 1.26.0+dfsg-1 (armhf) Mon, 18 Nov 2019 05:05:57 +0000 |
+==============================================================================+
Package: r-bioc-deseq2
Version: 1.26.0+dfsg-1
Source Version: 1.26.0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-7d3f8b2c-e5c1-4128-ae47-6bcea5222fdd' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 589 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-deseq2 1.26.0+dfsg-1 (dsc) [2438 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-deseq2 1.26.0+dfsg-1 (tar) [579 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-deseq2 1.26.0+dfsg-1 (diff) [6696 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-RXCmfQ/r-bioc-deseq2-1.26.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-RXCmfQ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-8jQqXd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-8jQqXd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-8jQqXd/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ Release.gpg [370 B]
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Reading package lists...
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12227 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-s4vectors (>= 0.23.18), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp, r-cran-rcpparmadillo
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-s4vectors (>= 0.23.18), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp, r-cran-rcpparmadillo
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-8jQqXd/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ Sources [618 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ Packages [696 B]
Fetched 2647 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings
fonts-mathjax gcc-7-base gettext gettext-base gfortran gfortran-9 groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libc-ares2 libcairo2 libcroco3 libcurl4
libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran4 libgfortran5
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1 libncurses-dev
libncurses5-dev libncurses6 libnghttp2-14 libnode64 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js node-normalize.css nodejs openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-delayedarray
r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-acepack
r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli
r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-dbi
r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi
r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite
r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zeallot
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff
liblapack-doc krb5-doc krb5-user icu-doc fonts-mathjax-extras fonts-stix
libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libjs-html5shiv npm
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biostrings
r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-all r-bioc-rsamtools
r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-codetools r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer
r-bioc-gviz r-bioc-annotationhub r-bioc-edger r-cran-rmarkdown r-bioc-rhdf5
r-cran-testthat r-cran-devtools r-cran-webshot r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
r-cran-png r-cran-curl r-cran-r.utils r-cran-xts r-cran-zoo r-cran-rmysql
r-cran-callr r-cran-dbplyr r-cran-lubridate r-cran-rpostgresql r-cran-broom
r-cran-readr r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg
r-cran-sf r-cran-svglite r-cran-forcats r-cran-httr r-cran-rgl
r-cran-reticulate r-cran-magick r-cran-jpeg r-cran-xml2 r-cran-getopt
libgdal-dev r-cran-doparallel r-cran-iterators r-cran-covr r-cran-inline
r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-generics
r-cran-tinytex r-cran-remotes r-cran-plm
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2
libpng-tools publicsuffix libltdl-dev nodejs-doc libmail-sendmail-perl
r-recommended r-doc-html r-bioc-go.db r-cran-runit r-cran-batchjobs
r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi
r-cran-class r-cran-testthat r-cran-fastmatch r-cran-mockery r-cran-hms
r-cran-testit r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin
r-cran-tikzdevice r-cran-rmarkdown r-cran-tinytex r-cran-lubridate
r-cran-domc r-cran-abind r-cran-dbitest r-cran-mockr libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings
fonts-mathjax gcc-7-base gettext gettext-base gfortran gfortran-9 groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libc-ares2 libcairo2 libcroco3 libcurl4
libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran4 libgfortran5
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1 libncurses-dev
libncurses5-dev libncurses6 libnghttp2-14 libnode64 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js node-normalize.css nodejs openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-delayedarray
r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-acepack
r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli
r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-dbi
r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi
r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite
r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zeallot
sbuild-build-depends-r-bioc-deseq2-dummy sensible-utils ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 252 newly installed, 0 to remove and 2 not upgraded.
Need to get 194 MB of archives.
After this operation, 475 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8jQqXd/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
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Get:10 http://172.17.0.1/private bullseye-staging/main armhf gcc-7-base armhf 7.5.0-1 [191 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
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Get:14 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-2 [136 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-3 [1137 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-8 [107 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1+b1 [297 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-17+rpi1 [231 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-8 [1568 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1.1 [62.8 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0-1 [249 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.1-7 [24.3 MB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-17+rpi1 [279 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-17+rpi1 [7451 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3+rpi1 [1432 B]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.8.0-8 [112 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-8 [2839 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20191019-1 [284 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20191019-1 [940 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-3 [114 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.1-7 [4488 B]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20190917 [36.2 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf fonts-mathjax all 2.7.4+dfsg-1 [2209 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libc-ares2 armhf 1.15.0-1 [84.0 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libgfortran4 armhf 7.5.0-1 [190 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-1 [173 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-datatables all 1.10.20+dfsg-1 [136 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libjs-mathjax all 2.7.4+dfsg-1 [5658 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.33.1-2 [112 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libnode64 armhf 10.17.0~dfsg-2 [5188 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.9-1 [308 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.9-1 [14.6 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf nodejs armhf 10.17.0~dfsg-2 [87.9 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biobase armhf 2.46.0-1 [2229 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.24.0-1 [1944 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.20.0-1 [2217 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dbi all 1.0.0-2 [789 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit armhf 1.1-14-1 [218 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf r-cran-assertthat all 0.2.1-1 [56.7 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rlang armhf 0.4.1-1 [1102 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf r-cran-backports armhf 1.1.5-1 [57.9 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ellipsis armhf 0.3.0-1 [30.3 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf r-cran-digest armhf 0.6.22-1 [171 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf r-cran-glue armhf 1.3.1-1 [156 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf r-cran-zeallot all 0.1.0-2 [59.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf r-cran-vctrs armhf 0.2.0-1 [735 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf r-cran-blob all 1.2.0-1 [46.0 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgconfig all 2.0.3-1 [19.7 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.1.5-1 [23.8 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.3-1 [1928 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rsqlite armhf 2.1.2-1 [804 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotationdbi all 1.48.0-1 [4629 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xml armhf 3.98-1.20-2 [1957 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xtable all 1:1.8-4-1 [691 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcurl armhf 1.95-4.12-1 [722 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotate all 1.64.0+dfsg-1 [2113 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formatr all 1.7-1 [152 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lambda.r all 1.2.4-1 [119 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocparallel armhf 1.20.0-1 [1070 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.55.0-1 [576 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-17-2 [3458 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-delayedarray armhf 0.12.0+dfsg-1 [1666 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf r-cran-survival armhf 3.1-7-1 [7412 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genefilter armhf 1.68.0-1 [1659 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-geneplotter all 1.64.0-1 [1549 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodbdata all 1.2.2-1 [10.2 MB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodb all 1.22.0-1 [3687 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-zlibbioc all 1.32.0+dfsg-1 [8780 B]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-xvector armhf 0.26.0-1 [610 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomicranges armhf 1.38.0+dfsg-1 [1828 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-summarizedexperiment all 1.16.0+dfsg-1 [1893 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf r-cran-acepack armhf 1.4.1-2+b1 [57.5 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf r-cran-base64enc armhf 0.1-3-2 [27.4 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf r-cran-checkmate armhf 1.9.4-1 [588 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf r-cran-chron armhf 2.3-54-1 [197 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf r-cran-crayon all 1.3.4-4 [750 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf r-cran-cli all 1.1.0-1 [175 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf r-cran-cluster armhf 2.1.0-2 [539 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf r-cran-colorspace armhf 1.4-1+dfsg-1 [1584 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf r-cran-data.table armhf 1.12.6+dfsg-1 [1574 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf r-cran-r6 all 2.4.1-1 [79.4 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [126 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pillar all 1.3.1-1 [203 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tibble armhf 2.0.1-1 [656 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf r-cran-purrr armhf 0.3.3-1 [399 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tidyselect armhf 0.2.5-1 [113 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dplyr armhf 0.8.3-1 [1735 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf r-cran-evaluate all 0.14-1 [81.2 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf r-cran-foreign armhf 0.8.72-1 [241 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formula all 1.2-3-2 [178 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gtable all 0.3.0+dfsg-1 [164 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lazyeval armhf 0.2.2-1 [143 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mass armhf 7.3-51.4-2 [1118 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nlme armhf 3.1.142-1 [2249 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mgcv armhf 1.8-31-1 [2752 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plyr armhf 1.8.4-2 [811 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringi armhf 1.4.3-1 [679 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringr all 1.4.0-1 [198 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf r-cran-reshape2 armhf 1.4.3-2 [109 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf r-cran-labeling all 0.3-3 [61.4 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf r-cran-munsell all 0.5.0-1 [235 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf r-cran-viridislite all 0.3.0-3 [59.2 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf r-cran-scales armhf 1.0.0-2 [541 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf r-cran-withr all 2.1.2-3 [152 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ggplot2 all 3.2.1+dfsg-1 [2882 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gridextra all 2.3-2 [1023 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf r-cran-highr all 0.8+dfsg-1 [40.1 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b2 [2182 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rpart armhf 4.1-15-2 [700 kB]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nnet armhf 7.3-12-2+b1 [109 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xfun all 0.11-1 [174 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mime armhf 0.7-1 [35.4 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf r-cran-markdown armhf 1.1+dfsg-1 [120 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf r-cran-yaml armhf 2.2.0-1 [88.6 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf r-cran-knitr all 1.26+dfsg-1 [816 kB]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf r-cran-htmltools armhf 0.4.0-1 [194 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf r-cran-jsonlite armhf 1.6+dfsg-1 [432 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf r-cran-htmlwidgets all 1.5.1+dfsg-1 [115 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rstudioapi all 0.10-2 [203 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tidyr armhf 0.8.3-1 [418 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf r-cran-htmltable all 1.13.2-1 [306 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf r-cran-viridis all 0.5.1-2 [1846 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf r-cran-hmisc armhf 4.3-0-1 [3082 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpparmadillo armhf 0.9.800.1.0-1+1 [1090 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up r-base-dev (3.6.1-7) ...
Setting up r-cran-assertthat (0.2.1-1) ...
Setting up littler (0.3.9-1) ...
Setting up r-cran-xfun (0.11-1) ...
Setting up r-cran-withr (2.1.2-3) ...
Setting up r-cran-backports (1.1.5-1) ...
Setting up r-cran-mime (0.7-1) ...
Setting up r-cran-base64enc (0.1-3-2) ...
Setting up r-cran-digest (0.6.22-1) ...
Setting up r-cran-yaml (2.2.0-1) ...
Setting up r-cran-lambda.r (1.2.4-1) ...
Setting up r-cran-evaluate (0.14-1) ...
Setting up r-cran-dbi (1.0.0-2) ...
Setting up r-cran-highr (0.8+dfsg-1) ...
Setting up r-cran-prettyunits (1.0.2-3) ...
Setting up r-cran-fansi (0.4.0-1) ...
Setting up r-cran-mass (7.3-51.4-2) ...
Setting up r-cran-checkmate (1.9.4-1) ...
Setting up r-cran-acepack (1.4.1-2+b1) ...
Setting up r-cran-snow (1:0.4.3-1) ...
Setting up r-cran-data.table (1.12.6+dfsg-1) ...
Setting up r-cran-glue (1.3.1-1) ...
Setting up r-cran-foreign (0.8.72-1) ...
Setting up r-cran-bit (1.1-14-1) ...
Setting up r-cran-zeallot (0.1.0-2) ...
Setting up r-cran-xtable (1:1.8-4-1) ...
Setting up r-cran-cli (1.1.0-1) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-cran-bit64 (0.9-7-3) ...
Setting up r-bioc-zlibbioc (1.32.0+dfsg-1) ...
Setting up r-bioc-biobase (2.46.0-1) ...
Setting up r-cran-jsonlite (1.6+dfsg-1) ...
Setting up r-cran-rstudioapi (0.10-2) ...
Setting up r-cran-pkgconfig (2.0.3-1) ...
Setting up r-cran-utf8 (1.1.4-1+b1) ...
Setting up r-cran-colorspace (1.4-1+dfsg-1) ...
Setting up r-cran-stringi (1.4.3-1) ...
Setting up r-cran-markdown (1.1+dfsg-1) ...
Setting up r-cran-plyr (1.8.4-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-2) ...
Setting up r-bioc-s4vectors (0.24.0-1) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up r-cran-gridextra (2.3-2) ...
Setting up r-cran-memoise (1.1.0-2) ...
Setting up r-cran-purrr (0.3.3-1) ...
Setting up r-cran-matrix (1.2-17-2) ...
Setting up r-cran-htmltools (0.4.0-1) ...
Setting up r-cran-mgcv (1.8-31-1) ...
Setting up r-cran-rcpparmadillo (0.9.800.1.0-1+1) ...
Setting up r-bioc-iranges (2.20.0-1) ...
Setting up r-cran-rcurl (1.95-4.12-1) ...
Setting up r-cran-pillar (1.3.1-1) ...
Setting up r-cran-ellipsis (0.3.0-1) ...
Setting up r-cran-stringr (1.4.0-1) ...
Setting up r-bioc-biocparallel (1.20.0-1) ...
Setting up r-cran-munsell (0.5.0-1) ...
Setting up r-cran-tibble (2.0.1-1) ...
Setting up r-cran-survival (3.1-7-1) ...
Setting up r-cran-latticeextra (0.6-28-2+b2) ...
Setting up r-cran-htmlwidgets (1.5.1+dfsg-1) ...
Setting up r-cran-tidyselect (0.2.5-1) ...
Setting up r-cran-reshape2 (1.4.3-2) ...
Setting up r-bioc-genomeinfodb (1.22.0-1) ...
Setting up r-cran-scales (1.0.0-2) ...
Setting up r-bioc-xvector (0.26.0-1) ...
Setting up r-cran-knitr (1.26+dfsg-1) ...
Setting up r-cran-dplyr (0.8.3-1) ...
Setting up r-cran-vctrs (0.2.0-1) ...
Setting up r-bioc-delayedarray (0.12.0+dfsg-1) ...
Setting up r-cran-ggplot2 (3.2.1+dfsg-1) ...
Setting up r-bioc-genomicranges (1.38.0+dfsg-1) ...
Setting up r-cran-rpart (4.1-15-2) ...
Setting up r-cran-viridis (0.5.1-2) ...
Setting up r-cran-tidyr (0.8.3-1) ...
Setting up r-cran-blob (1.2.0-1) ...
Setting up r-cran-rsqlite (2.1.2-1) ...
Setting up r-bioc-summarizedexperiment (1.16.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.48.0-1) ...
Setting up r-cran-htmltable (1.13.2-1) ...
Setting up r-bioc-annotate (1.64.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.68.0-1) ...
Setting up r-bioc-geneplotter (1.64.0-1) ...
Setting up r-cran-hmisc (4.3-0-1) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up dh-r (20190917) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-17+rpi1 gcc-9_9.2.1-17+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2+rpi1 binutils-arm-linux-gnueabihf_2.33.1-2+rpi1 binutils-common_2.33.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-17+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-r_20190917 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-1 fonts-mathjax_2.7.4+dfsg-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-17+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.5.0-1 gcc-9_9.2.1-17+rpi1 gcc-9-base_9.2.1-17+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:9.2.1-3+rpi1 gfortran-9_9.2.1-17+rpi1 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-17+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-17+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2+rpi1 libblas-dev_3.8.0-8 libblas3_3.8.0-8 libblkid1_2.34-0.1 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-ares2_1.15.0-1 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 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nodejs_10.17.0~dfsg-2 openssl_1.1.1d-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-annotate_1.64.0+dfsg-1 r-bioc-annotationdbi_1.48.0-1 r-bioc-biobase_2.46.0-1 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.0-1 r-bioc-delayedarray_0.12.0+dfsg-1 r-bioc-genefilter_1.68.0-1 r-bioc-geneplotter_1.64.0-1 r-bioc-genomeinfodb_1.22.0-1 r-bioc-genomeinfodbdata_1.2.2-1 r-bioc-genomicranges_1.38.0+dfsg-1 r-bioc-iranges_2.20.0-1 r-bioc-s4vectors_0.24.0-1 r-bioc-summarizedexperiment_1.16.0+dfsg-1 r-bioc-xvector_0.26.0-1 r-bioc-zlibbioc_1.32.0+dfsg-1 r-cran-acepack_1.4.1-2+b1 r-cran-assertthat_0.2.1-1 r-cran-backports_1.1.5-1 r-cran-base64enc_0.1-3-2 r-cran-bit_1.1-14-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.2.0-1 r-cran-checkmate_1.9.4-1 r-cran-chron_2.3-54-1 r-cran-cli_1.1.0-1 r-cran-cluster_2.1.0-2 r-cran-colorspace_1.4-1+dfsg-1 r-cran-crayon_1.3.4-4 r-cran-data.table_1.12.6+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.22-1 r-cran-dplyr_0.8.3-1 r-cran-ellipsis_0.3.0-1 r-cran-evaluate_0.14-1 r-cran-fansi_0.4.0-1 r-cran-foreign_0.8.72-1 r-cran-formatr_1.7-1 r-cran-formula_1.2-3-2 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.2.1+dfsg-1 r-cran-glue_1.3.1-1 r-cran-gridextra_2.3-2 r-cran-gtable_0.3.0+dfsg-1 r-cran-highr_0.8+dfsg-1 r-cran-hmisc_4.3-0-1 r-cran-htmltable_1.13.2-1 r-cran-htmltools_0.4.0-1 r-cran-htmlwidgets_1.5.1+dfsg-1 r-cran-jsonlite_1.6+dfsg-1 r-cran-knitr_1.26+dfsg-1 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2+b2 r-cran-lazyeval_0.2.2-1 r-cran-littler_0.3.9-1 r-cran-magrittr_1.5-5 r-cran-markdown_1.1+dfsg-1 r-cran-mass_7.3-51.4-2 r-cran-matrix_1.2-17-2 r-cran-matrixstats_0.55.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-31-1 r-cran-mime_0.7-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.142-1 r-cran-nnet_7.3-12-2+b1 r-cran-pillar_1.3.1-1 r-cran-pkgconfig_2.0.3-1 r-cran-pkgkitten_0.1.5-1 r-cran-plyr_1.8.4-2 r-cran-prettyunits_1.0.2-3 r-cran-purrr_0.3.3-1 r-cran-r6_2.4.1-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.3-1 r-cran-rcpparmadillo_0.9.800.1.0-1+1 r-cran-rcurl_1.95-4.12-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.4.1-1 r-cran-rpart_4.1-15-2 r-cran-rsqlite_2.1.2-1 r-cran-rstudioapi_0.10-2 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.4.3-1 r-cran-stringr_1.4.0-1 r-cran-survival_3.1-7-1 r-cran-tibble_2.0.1-1 r-cran-tidyr_0.8.3-1 r-cran-tidyselect_0.2.5-1 r-cran-utf8_1.1.4-1+b1 r-cran-vctrs_0.2.0-1 r-cran-viridis_0.5.1-2 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xfun_0.11-1 r-cran-xml_3.98-1.20-2 r-cran-xtable_1:1.8-4-1 r-cran-yaml_2.2.0-1 r-cran-zeallot_0.1.0-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.34-0.1 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 12 20:38:45 2019 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.26.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg
dpkg-source: info: unpacking r-bioc-deseq2_1.26.0+dfsg.orig.tar.xz
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dpkg-source: info: applying remove-locfit
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Check disk space
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User Environment
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APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
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SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
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dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.26.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
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debian/rules build-arch
dh build-arch --buildsystem R
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dh_testroot -a -O--buildsystem=R
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I: R packages needed for DEP8: testthat
I: R Package: DESeq2 Version: 1.26.0
I: Building using R version 3.6.1-7
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Tue, 12 Nov 2019 21:26:13 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-deseq2-1.26.0\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-deseq2-1.26.0\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 12 Nov 2019 21:26:13 +0100'"
* installing *source* package 'DESeq2' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DESeq2.cpp -o DESeq2.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-deseq2-1.26.0+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library/00LOCK-r-bioc-deseq2-1.26.0+dfsg/00new/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DESeq2)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.23.18)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
I: Using r-bioc-ihw for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
I: Using r-bioc-tximport for Suggests:tximport
W: Cannot find a debian package for Suggests:tximeta
W: Cannot find a debian package for Suggests:tximportData
I: Using r-cran-readr for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
I: BioConductor API version: r-api-bioc-3.10
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
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dh_installsystemduser -a -O--buildsystem=R
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dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.26.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.26.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-deseq2_1.26.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-11-18T05:25:51Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-deseq2_1.26.0+dfsg-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Tue, 12 Nov 2019 21:26:13 +0100
Source: r-bioc-deseq2
Binary: r-bioc-deseq2 r-bioc-deseq2-dbgsym
Architecture: armhf
Version: 1.26.0+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
r-bioc-deseq2 (1.26.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Fixed debian/watch for BioConductor
* debhelper-compat 12
* Standards-Version: 4.4.1
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r-bioc-deseq2-dbgsym_1.26.0+dfsg-1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 1010328 bytes: control archive=544 bytes.
401 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-deseq2-dbgsym
Source: r-bioc-deseq2
Version: 1.26.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1031
Depends: r-bioc-deseq2 (= 1.26.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-deseq2
Build-Ids: ce0783ed960dce40da2976c740de74ae61339d53
drwxr-xr-x root/root 0 2019-11-12 20:26 ./
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root 1045416 2019-11-12 20:26 ./usr/lib/debug/.build-id/ce/0783ed960dce40da2976c740de74ae61339d53.debug
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/share/
drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-11-12 20:26 ./usr/share/doc/r-bioc-deseq2-dbgsym -> r-bioc-deseq2
r-bioc-deseq2_1.26.0+dfsg-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 1161456 bytes: control archive=2808 bytes.
1200 bytes, 16 lines control
5871 bytes, 69 lines md5sums
Package: r-bioc-deseq2
Version: 1.26.0+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1766
Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-s4vectors (>= 0.23.18), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc1 (>= 1:3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 9)
Recommends: r-cran-testthat
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-bioc-ihw, r-bioc-tximport, r-cran-readr, r-cran-pbapply
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DESeq2/
Description: R package for RNA-Seq Differential Expression Analysis
Differential gene expression analysis based on the negative binomial
distribution. Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential expression based
on a model using the negative binomial distribution.
drwxr-xr-x root/root 0 2019-11-12 20:26 ./
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-rw-r--r-- root/root 117436 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/doc/DESeq2.Rmd
-rw-r--r-- root/root 1336 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/doc/index.html
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-rw-r--r-- root/root 2887 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/help/AnIndex
-rw-r--r-- root/root 139480 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/help/DESeq2.rdb
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-rw-r--r-- root/root 886 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/help/aliases.rds
-rw-r--r-- root/root 542 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/help/paths.rds
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-rw-r--r-- root/root 13191 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/html/00Index.html
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-rw-r--r-- root/root 207680 2019-11-12 20:26 ./usr/lib/R/site-library/DESeq2/libs/DESeq2.so
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drwxr-xr-x root/root 0 2019-11-12 20:26 ./usr/share/doc/r-bioc-deseq2/examples/
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 6884
Build-Time: 162
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1013
Job: r-bioc-deseq2_1.26.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 1194
Source-Version: 1.26.0+dfsg-1
Space: 6884
Status: successful
Version: 1.26.0+dfsg-1
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Finished at 2019-11-18T05:25:51Z
Build needed 00:19:54, 6884k disk space