Raspbian Package Auto-Building

r-bioc-deseq2 → 1.22.2+dfsg-1 → armhf → 2019-01-09 05:29:42

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| r-bioc-deseq2 1.22.2+dfsg-1 (armhf)          Wed, 09 Jan 2019 04:48:25 +0000 |
+==============================================================================+

Package: r-bioc-deseq2
Version: 1.22.2+dfsg-1
Source Version: 1.22.2+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7d1febfb-da9e-4d62-844e-4bf693136158' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.1 MB]
Fetched 24.5 MB in 28s (873 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 586 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.2+dfsg-1 (dsc) [2394 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.2+dfsg-1 (tar) [577 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.2+dfsg-1 (diff) [6660 B]
Fetched 586 kB in 0s (5277 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-HoZKYQ/r-bioc-deseq2-1.22.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-HoZKYQ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ElZH40/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ElZH40/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ElZH40/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3051 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15815 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), r-cran-rcpparmadillo
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), r-cran-rcpparmadillo
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-ElZH40/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Sources [615 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ Packages [700 B]
Fetched 2648 B in 1s (3565 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
  libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gcc-7-base gettext
  gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libc-ares2
  libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
  libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-parser2.8 libice6
  libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-mathjax liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
  libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
  libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0
  libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
  libxt6 littler m4 man-db node-highlight.js node-normalize.css nodejs
  pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate
  r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
  r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
  r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
  r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
  r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
  r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff
  liblapack-doc icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc
  liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc
  apparmor less www-browser libjs-html5shiv libmail-box-perl ess r-doc-info
  | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-biostrings r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-rsamtools
  r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-batchjobs r-cran-bbmisc
  r-cran-doparallel r-cran-rmpi r-bioc-variantannotation
  r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-batchtools
  r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz
  r-bioc-annotationhub r-bioc-edger r-cran-rmarkdown r-cran-testthat
  libgdal-dev r-cran-devtools r-cran-webshot r-cran-kernsmooth r-cran-kernlab
  r-cran-mvtnorm r-cran-vcd r-cran-dichromat r-cran-shiny r-cran-shinyjs
  r-cran-curl r-cran-r.utils r-cran-xts r-cran-zoo r-cran-rmysql r-cran-callr
  r-cran-dbplyr r-cran-lubridate r-cran-mgcv r-cran-rpostgresql r-cran-maps
  r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-sf r-cran-svglite
  r-cran-forcats r-cran-httr r-cran-rgl r-cran-reticulate r-cran-png
  r-cran-xml2 r-cran-getopt r-cran-iterators r-cran-inline r-cran-rsprng
  r-cran-rlecuyer r-cran-testit r-cran-tinytex r-cran-spdep r-cran-plm
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs javascript-common libpng-tools publicsuffix
  libltdl-dev nodejs-doc libmail-sendmail-perl r-recommended r-doc-html
  r-bioc-go.db r-cran-runit r-cran-class r-cran-testthat r-cran-fastmatch
  r-cran-mockery r-cran-hms r-cran-bit64 r-cran-testit r-cran-codetools
  r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-tikzdevice r-cran-rmarkdown
  r-cran-tinytex r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest
  r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gcc-7-base gettext
  gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libc-ares2
  libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
  libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-parser2.8 libice6
  libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-mathjax liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
  libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
  libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0
  libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
  libxt6 littler m4 man-db node-highlight.js node-normalize.css nodejs
  pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate
  r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
  r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
  r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
  r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
  r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
  r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml
  sbuild-build-depends-r-bioc-deseq2-dummy ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
0 upgraded, 229 newly installed, 0 to remove and 5 not upgraded.
Need to get 183 MB/185 MB of archives.
After this operation, 466 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ElZH40/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [980 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-1 [782 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf node-normalize.css all 8.0.1-1 [12.1 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.2-3 [1076 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.26 [20.0 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.26 [17.5 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-13+rpi1 [205 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-2 [602 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.35.1-1 [70.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.62.0-1 [286 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-6 [168 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.3.0-1 [1130 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [61.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [51.6 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-1 [878 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-3 [235 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.9-1 [666 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.2-1 [23.6 MB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-13+rpi1 [248 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-13+rpi1 [5816 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:79 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:83 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-5 [166 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-5 [8845 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.2-1 [4480 B]
Get:96 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181206 [34.9 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.4+dfsg-1 [2209 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libc-ares2 armhf 1.14.0-1 [80.4 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libhttp-parser2.8 armhf 2.8.1-1 [19.1 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.4.0+dfsg-1 [274 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.4+dfsg-1 [5658 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.24.0-1 [96.3 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.5-1+b1 [301 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.5-1 [13.4 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 8.11.2~dfsg-1+rpi1 [4083 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.42.0-1 [2215 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.20.1-2 [1807 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.16.0-1 [2121 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi all 1.0.0-2 [789 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-14-1 [218 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.1-2 [25.0 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.18-1 [133 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1+b1 [3356 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.1.1-2+b2 [763 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.44.0-1 [4629 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.16-1 [1938 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-3-1 [737 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr all 1.5-3 [149 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.16.2-1 [1054 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray armhf 0.8.0+dfsg-1 [1281 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.43-3-1 [4622 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-bioc-genefilter armhf 1.64.0-1 [1689 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-bioc-geneplotter all 1.60.0-1 [1548 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.18.1-1 [3692 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.22.0-1 [596 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.34.0+dfsg-1 [1765 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1886 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2+b1 [57.5 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.3-1 [55.8 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-2 [27.4 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-cran-bindr all 0.1.1-2 [18.1 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf r-cran-bindrcpp armhf 0.2.2-2 [62.2 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.5-2 [507 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-53-1 [193 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf r-cran-crayon all 1.3.4-4 [750 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf r-cran-cli all 1.0.1-1 [519 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.7-1-1+b1 [525 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-3 [471 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.11.8+dfsg-1 [1286 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf r-cran-glue armhf 1.3.0-1 [91.5 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.3.0-1 [73.5 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.3.0.1-2 [1027 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [126 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf r-cran-pillar all 1.3.1-1 [203 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.4.2-3 [232 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf r-cran-purrr armhf 0.2.5-1 [265 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyselect armhf 0.2.5-1 [113 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf r-cran-dplyr armhf 0.7.8-1 [1579 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.12-1 [77.8 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.71-1 [238 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-3-2 [178 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-3 [93.6 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.1-3 [137 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-51.1-1 [1103 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf r-cran-nlme armhf 3.1.137-1+b1 [2202 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf r-cran-mgcv armhf 1.8-26-1 [2557 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-2 [811 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.2.4-2 [8374 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.3.1-2 [179 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.3-2 [109 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-3 [61.4 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.5.0-1 [235 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.3.0-3 [59.2 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 1.0.0-2 [541 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf r-cran-withr all 2.1.2-3 [152 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 3.1.0-1 [3740 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-2 [1023 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.7+dfsg-1 [39.7 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b2 [2182 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-13-1+b2 [886 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2+b1 [109 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.6-1 [34.8 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.9+dfsg-1 [120 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.2.0-1 [88.6 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf r-cran-xfun all 0.4-1 [145 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr all 1.21+dfsg-2 [855 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-2 [167 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.6+dfsg-1 [432 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB]
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Get:207 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyr armhf 0.8.2-1 [411 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.12-2 [293 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.5.1-2 [1846 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.1-1-3 [2951 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpparmadillo armhf 0.9.200.5.0-1 [1044 kB]
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Creating config file /etc/R/Renviron with new version
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Setting up r-cran-lazyeval (0.2.1-3) ...
Setting up r-cran-latticeextra (0.6-28-2+b2) ...
Setting up r-cran-nlme (3.1.137-1+b1) ...
Setting up r-cran-backports (1.1.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.0-1) ...
Setting up r-cran-foreign (0.8.71-1) ...
Setting up r-cran-stringr (1.3.1-2) ...
Setting up r-cran-prettyunits (1.0.2-3) ...
Setting up r-cran-htmltools (0.3.6-2) ...
Setting up r-cran-markdown (0.9+dfsg-1) ...
Setting up r-cran-rcpparmadillo (0.9.200.5.0-1) ...
Setting up r-cran-munsell (0.5.0-1) ...
Setting up r-cran-htmlwidgets (1.3+dfsg-1) ...
Setting up r-cran-blob (1.1.1-2) ...
Setting up r-cran-pillar (1.3.1-1) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up r-cran-reshape2 (1.4.3-2) ...
Setting up r-cran-rsqlite (2.1.1-2+b2) ...
Setting up r-bioc-iranges (2.16.0-1) ...
Setting up r-cran-scales (1.0.0-2) ...
Setting up r-cran-tibble (1.4.2-3) ...
Setting up r-bioc-biocparallel (1.16.2-1) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-bioc-delayedarray (0.8.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.18.1-1) ...
Setting up r-cran-checkmate (1.8.5-2) ...
Setting up r-cran-knitr (1.21+dfsg-2) ...
Setting up r-bioc-xvector (0.22.0-1) ...
Setting up r-cran-purrr (0.2.5-1) ...
Setting up r-cran-mgcv (1.8-26-1) ...
Setting up r-bioc-annotationdbi (1.44.0-1) ...
Setting up r-cran-ggplot2 (3.1.0-1) ...
Setting up r-cran-survival (2.43-3-1) ...
Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ...
Setting up r-cran-tidyselect (0.2.5-1) ...
Setting up r-bioc-annotate (1.60.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ...
Setting up r-cran-viridis (0.5.1-2) ...
Setting up r-bioc-genefilter (1.64.0-1) ...
Setting up r-cran-rpart (4.1-13-1+b2) ...
Setting up r-cran-dplyr (0.7.8-1) ...
Setting up r-bioc-geneplotter (1.60.0-1) ...
Setting up r-cran-tidyr (0.8.2-1) ...
Setting up r-cran-htmltable (1.12-2) ...
Setting up r-cran-hmisc (4.1-1-3) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.0.0-1) ...
Setting up debhelper (12) ...
Setting up dh-r (20181206) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-13+rpi1 gcc-8_8.2.0-13+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-13+rpi1 libstdc++6_8.2.0-13+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-13+rpi1 dash_0.5.10.2-4 dbus_1.12.12-1 dbus-user-session_1.12.12-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_12 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181206 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-mathjax_2.7.4+dfsg-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-13+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-13+rpi1 gcc-8-base_8.2.0-13+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-13+rpi1 gnupg_2.2.12-1+rpi1 gnupg-agent_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.1-3 groff-base_1.22.4-1 gzip_1.9-2.1 hostname_3.21 icu-devtools_63.1-5 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56+nmu1 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.2-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 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libgcc-8-dev_8.2.0-13+rpi1 libgcc1_1:8.2.0-13+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran-8-dev_8.2.0-13+rpi1 libgfortran4_7.3.0-19 libgfortran5_8.2.0-13+rpi1 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2+rpi1 libgomp1_8.2.0-13+rpi1 libgpg-error-l10n_1.33-3 libgpg-error0_1.33-3 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.2-1 libharfbuzz0b_2.3.0-1 libhogweed4_3.4.1~rc1-1 libhttp-parser2.8_2.8.1-1 libice6_2:1.0.9-2 libicu-dev_63.1-5 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjs-bootstrap_3.4.0+dfsg-1 libjs-highlight.js_9.12.0+dfsg1-4 libjs-jquery_3.2.1-1 libjs-jquery-datatables_1.10.19+dfsg-1 libjs-mathjax_2.7.4+dfsg-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-1 libldap-common_2.4.47+dfsg-1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpfr6_4.0.1-2 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libnss-systemd_240-2+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_240-2+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libplymouth4_0.9.4-1 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3+b1 libselinux1_2.8-1+b1 libsemanage-common_2.8-1 libsemanage1_2.8-1+b1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-13+rpi1 libstdc++6_8.2.0-13+rpi1 libswitch-perl_2.17-2 libsystemd0_240-2+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.9-1 libtool_2.4.6-6 libubsan1_8.2.0-13+rpi1 libuchardet0_0.0.6-3 libudev1_240-2+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33-0.2 libuv1_1.24.0-1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-2+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 littler_0.3.5-1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 node-highlight.js_9.12.0+dfsg1-4 node-normalize.css_8.0.1-1 nodejs_8.11.2~dfsg-1+rpi1 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 r-base-core_3.5.2-1 r-base-dev_3.5.2-1 r-bioc-annotate_1.60.0+dfsg-1 r-bioc-annotationdbi_1.44.0-1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.2-1 r-bioc-delayedarray_0.8.0+dfsg-1 r-bioc-genefilter_1.64.0-1 r-bioc-geneplotter_1.60.0-1 r-bioc-genomeinfodb_1.18.1-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicranges_1.34.0+dfsg-1 r-bioc-iranges_2.16.0-1 r-bioc-s4vectors_0.20.1-2 r-bioc-summarizedexperiment_1.12.0+dfsg-1 r-bioc-xvector_0.22.0-1 r-cran-acepack_1.4.1-2+b1 r-cran-assertthat_0.2.0-2 r-cran-backports_1.1.3-1 r-cran-base64enc_0.1-3-2 r-cran-bindr_0.1.1-2 r-cran-bindrcpp_0.2.2-2 r-cran-bit_1.1-14-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.1.1-2 r-cran-checkmate_1.8.5-2 r-cran-chron_2.3-53-1 r-cran-cli_1.0.1-1 r-cran-cluster_2.0.7-1-1+b1 r-cran-colorspace_1.3-2-3 r-cran-crayon_1.3.4-4 r-cran-data.table_1.11.8+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.18-1 r-cran-dplyr_0.7.8-1 r-cran-evaluate_0.12-1 r-cran-fansi_0.4.0-1 r-cran-foreign_0.8.71-1 r-cran-formatr_1.5-3 r-cran-formula_1.2-3-2 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.1.0-1 r-cran-glue_1.3.0-1 r-cran-gridextra_2.3-2 r-cran-gtable_0.2.0-3 r-cran-highr_0.7+dfsg-1 r-cran-hmisc_4.1-1-3 r-cran-htmltable_1.12-2 r-cran-htmltools_0.3.6-2 r-cran-htmlwidgets_1.3+dfsg-1 r-cran-jsonlite_1.6+dfsg-1 r-cran-knitr_1.21+dfsg-2 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2+b2 r-cran-lazyeval_0.2.1-3 r-cran-littler_0.3.5-1+b1 r-cran-magrittr_1.5-5 r-cran-markdown_0.9+dfsg-1 r-cran-mass_7.3-51.1-1 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-26-1 r-cran-mime_0.6-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.137-1+b1 r-cran-nnet_7.3-12-2+b1 r-cran-pillar_1.3.1-1 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-plyr_1.8.4-2 r-cran-prettyunits_1.0.2-3 r-cran-purrr_0.2.5-1 r-cran-r6_2.3.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.0-1+b1 r-cran-rcpparmadillo_0.9.200.5.0-1 r-cran-rcurl_1.95-4.11-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.3.0.1-2 r-cran-rpart_4.1-13-1+b2 r-cran-rsqlite_2.1.1-2+b2 r-cran-rstudioapi_0.8-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.2.4-2 r-cran-stringr_1.3.1-2 r-cran-survival_2.43-3-1 r-cran-tibble_1.4.2-3 r-cran-tidyr_0.8.2-1 r-cran-tidyselect_0.2.5-1 r-cran-utf8_1.1.4-1+b1 r-cran-viridis_0.5.1-2 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xfun_0.4-1 r-cran-xml_3.98-1.16-1 r-cran-xtable_1:1.8-3-1 r-cran-yaml_2.2.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-2+rpi1 systemd-sysv_240-2+rpi1 sysvinit-utils_2.93-2 tar_1.30+dfsg-3+rpi1 tzdata_2018i-1 ucf_3.0038+nmu1 udev_240-2+rpi1 unzip_6.0-21 util-linux_2.33-0.2 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan  6 15:23:00 2019 UTC
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv:                issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.22.2+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg
dpkg-source: info: unpacking r-bioc-deseq2_1.22.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-deseq2_1.22.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-locfit
dpkg-source: info: applying fix_autopkgtest.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-7d1febfb-da9e-4d62-844e-4bf693136158
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.22.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build-arch
dh build-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R Package: DESeq2 Version: 1.22.2
I: Building using R version 3.5.2-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 06 Jan 2019 16:08:22 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-deseq2-1.22.2\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-deseq2-1.22.2\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 06 Jan 2019 16:08:22 +0100'"
* installing *source* package 'DESeq2' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg/src'
g++  -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-xoRi9J/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c DESeq2.cpp -o DESeq2.o
g++  -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-xoRi9J/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-deseq2-1.22.2+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
W: Cannot find a debian package for Suggests:tximport
W: Cannot find a debian package for Suggests:tximportData
I: Using r-cran-readr for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
I: BioConductor API version: r-api-bioc-3.8
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs/DESeq2.so was not linked against libgfortran.so.5 (it uses none of the library's symbols)
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dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.22.2+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.22.2+dfsg-1_armhf.deb'.
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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Build finished at 2019-01-09T05:29:35Z

Finished
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I: Built successfully

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r-bioc-deseq2_1.22.2+dfsg-1_armhf.changes:
------------------------------------------

Format: 1.8
Date: Sun, 06 Jan 2019 16:08:22 +0100
Source: r-bioc-deseq2
Binary: r-bioc-deseq2
Architecture: armhf
Version: 1.22.2+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
 r-bioc-deseq2 (1.22.2+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.3.0
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| Package contents                                                             |
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r-bioc-deseq2-dbgsym_1.22.2+dfsg-1_armhf.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 905864 bytes: control archive=544 bytes.
     400 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-deseq2-dbgsym
 Source: r-bioc-deseq2
 Version: 1.22.2+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 931
 Depends: r-bioc-deseq2 (= 1.22.2+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-deseq2
 Build-Ids: 95e9266fa1a466bbc7b4c8d58249a5170fa04175

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drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/
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drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/lib/debug/.build-id/95/
-rw-r--r-- root/root    942632 2019-01-06 15:08 ./usr/lib/debug/.build-id/95/e9266fa1a466bbc7b4c8d58249a5170fa04175.debug
drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/share/
drwxr-xr-x root/root         0 2019-01-06 15:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-01-06 15:08 ./usr/share/doc/r-bioc-deseq2-dbgsym -> r-bioc-deseq2


r-bioc-deseq2_1.22.2+dfsg-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 1194528 bytes: control archive=2852 bytes.
    1180 bytes,    15 lines      control              
    5953 bytes,    70 lines      md5sums              
 Package: r-bioc-deseq2
 Version: 1.22.2+dfsg-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 1661
 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-api-bioc-3.8, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
 Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/DESeq2/
 Description: R package for RNA-Seq Differential Expression Analysis
  Differential gene expression analysis based on the negative binomial
  distribution. Estimate variance-mean dependence in count data from
  high-throughput sequencing assays and test for differential expression based
  on a model using the negative binomial distribution.

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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 6616
Build-Time: 482
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1933
Job: r-bioc-deseq2_1.22.2+dfsg-1
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 2470
Source-Version: 1.22.2+dfsg-1
Space: 6616
Status: successful
Version: 1.22.2+dfsg-1
--------------------------------------------------------------------------------
Finished at 2019-01-09T05:29:35Z
Build needed 00:41:10, 6616k disc space

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