r-bioc-deseq2 →
1.22.1+dfsg-2 →
armhf → 2018-12-03 05:58:02
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-deseq2 1.22.1+dfsg-2 (armhf) Mon, 03 Dec 2018 05:37:53 +0000 |
+==============================================================================+
Package: r-bioc-deseq2
Version: 1.22.1+dfsg-2
Source Version: 1.22.1+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-2793cf37-b074-488a-a7aa-15eccb2da3b4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
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W: No sandbox user '_apt' on the system, can not drop privileges
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| Fetch source files |
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Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 586 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-2 (dsc) [2407 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-2 (tar) [577 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-2 (diff) [6656 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-kjM00H/r-bioc-deseq2-1.22.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-kjM00H' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QFNMpL/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QFNMpL/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QFNMpL/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ InRelease
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
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Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any)
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| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-cran-rcpparmadillo, libgdal-dev, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0)
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-cran-rcpparmadillo, libgdal-dev, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-QFNMpL/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ Sources [623 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ Packages [706 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core fonts-mathjax gcc-7-base
gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
gir1.2-harfbuzz-0.0 groff-base hdf5-helpers icu-devtools intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo9
libarpack2 libarpack2-dev libblas-dev libblas3 libboost-dev libboost1.67-dev
libbsd0 libbz2-dev libc-ares2 libcairo2 libcharls-dev libcharls1 libcroco3
libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
libdapclient6v5 libdapserver7v5 libdatrie1 libelf1 libepsilon-dev
libepsilon1 libexpat1-dev libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfreexl-dev libfreexl1
libfribidi0 libfyba-dev libfyba0 libgdal-dev libgdal20 libgeos-3.7.0
libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev
libgfortran4 libgfortran5 libgif-dev libgif7 libgirepository-1.0-1
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libharfbuzz-dev
libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt
libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhttp-parser2.8
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63
libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-mathjax libjson-c-dev libkml-dev libkmlbase1 libkmlconvenience1
libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 liblapack-dev
liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc
libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler80
libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
libreadline-dev librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7
libsqlite3-dev libssh2-1 libsuperlu-dev libsuperlu5 libswitch-perl libsz2
libtcl8.6 libthai-data libthai0 libtiff-dev libtiff5 libtiffxx5 libtk8.6
libtool liburiparser-dev liburiparser1 libuv1 libwebp-dev libwebp6
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6
libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
littler m4 man-db mime-support mysql-common node-highlight.js
node-normalize.css nodejs odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-annotate
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
r-cran-xml r-cran-xtable r-cran-yaml ucf unixodbc-dev unzip uuid-dev
x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff
libitpp-dev liblapack-doc libboost-doc libboost1.67-doc
libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev
libboost-context1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
libgraphite2-utils libhdf4-doc hdf4-tools libhdf5-doc icu-doc
fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils libtool-doc
liblzma-doc ncurses-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql
tdsodbc unixodbc-bin ogdi-bin libfreetype6-dev postgresql-doc-11 proj-bin
readline-doc sqlite3-doc libsuperlu-doc tcl8.6 tk8.6 gcj-jdk libxerces-c-doc
m4-doc apparmor less www-browser libjs-html5shiv libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biostrings r-bioc-go.db r-cran-runit
r-bioc-graph r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach
r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments
r-bioc-shortread r-cran-codetools r-bioc-bsgenome r-bioc-genomicfeatures
r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-edger
r-cran-rmarkdown r-cran-testthat r-cran-devtools r-cran-webshot
r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-dichromat
r-cran-shiny r-cran-shinyjs r-cran-curl r-cran-r.utils r-cran-xts r-cran-zoo
r-cran-rmysql r-cran-callr r-cran-dbplyr r-cran-lubridate r-cran-mgcv
r-cran-rpostgresql r-cran-maps r-cran-maptools r-cran-multcomp
r-cran-quantreg r-cran-sf r-cran-svglite r-cran-forcats r-cran-httr
r-cran-rgl r-cran-png r-cran-xml2 r-cran-getopt r-cran-doparallel
r-cran-iterators r-cran-inline r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
r-cran-spdep r-cran-plm
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin
shared-mime-info xdg-user-dirs javascript-common libpng-tools poppler-data
publicsuffix nodejs-doc libmail-sendmail-perl r-recommended r-doc-html
r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel
r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-cran-class r-cran-testthat
r-cran-fastmatch r-cran-mockery r-cran-hms r-cran-bit64 r-cran-testit
r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-tikzdevice
r-cran-tinytex r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest
r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core fonts-mathjax gcc-7-base
gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
gir1.2-harfbuzz-0.0 groff-base hdf5-helpers icu-devtools intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo9
libarpack2 libarpack2-dev libblas-dev libblas3 libboost-dev libboost1.67-dev
libbsd0 libbz2-dev libc-ares2 libcairo2 libcharls-dev libcharls1 libcroco3
libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
libdapclient6v5 libdapserver7v5 libdatrie1 libelf1 libepsilon-dev
libepsilon1 libexpat1-dev libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfreexl-dev libfreexl1
libfribidi0 libfyba-dev libfyba0 libgdal-dev libgdal20 libgeos-3.7.0
libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev
libgfortran4 libgfortran5 libgif-dev libgif7 libgirepository-1.0-1
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libharfbuzz-dev
libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt
libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhttp-parser2.8
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63
libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-mathjax libjson-c-dev libkml-dev libkmlbase1 libkmlconvenience1
libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 liblapack-dev
liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc
libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler80
libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
libreadline-dev librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7
libsqlite3-dev libssh2-1 libsuperlu-dev libsuperlu5 libswitch-perl libsz2
libtcl8.6 libthai-data libthai0 libtiff-dev libtiff5 libtiffxx5 libtk8.6
libtool liburiparser-dev liburiparser1 libuv1 libwebp-dev libwebp6
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6
libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
littler m4 man-db mime-support mysql-common node-highlight.js
node-normalize.css nodejs odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-annotate
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
r-cran-xml r-cran-xtable r-cran-yaml
sbuild-build-depends-r-bioc-deseq2-dummy ucf unixodbc-dev unzip uuid-dev
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 352 newly installed, 0 to remove and 4 not upgraded.
Need to get 244 MB/250 MB of archives.
After this operation, 828 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QFNMpL/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [996 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf node-normalize.css all 8.0.1-1 [12.1 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-4 [7974 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.37-1 [683 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.37-1 [1533 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.37-1 [28.2 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:48 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.62.0-1 [286 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-4 [166 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.1.1-1+rpi1 [1013 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-4 [61.9 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-4 [51.5 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-3 [235 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-2 [23.6 MB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:89 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:93 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git180724-3 [12.9 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libiculx63 armhf 63.1-4 [26.3 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-4 [166 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 2.1.1-1+rpi1 [742 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 2.1.1-1+rpi1 [749 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.1-1 [78.3 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.1-1 [143 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.1.1-1+rpi1 [757 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 2.1.1-1+rpi1 [1099 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git180724-3 [28.5 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-4 [8865 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-2 [4484 B]
Get:121 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181126 [34.7 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.4+dfsg-1 [2209 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.2+dfsg-2 [733 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.6.3-1+rpi1 [81.2 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libarmadillo9 armhf 1:9.100.6+dfsg-1 [86.3 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.6.3-1+rpi1 [89.3 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:9.100.6+dfsg-1 [357 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-10 [8387 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.67.0.1+b1 [4140 B]
Get:138 http://172.17.0.1/private buster-staging/main armhf libc-ares2 armhf 1.14.0-1 [80.4 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libcharls1 armhf 1.1.0+dfsg-3 [44.4 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-3 [21.8 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.62.0-1 [284 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.62.0-1 [358 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libdap25 armhf 3.20.1-1 [470 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libdapserver7v5 armhf 3.20.1-1 [127 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libdapclient6v5 armhf 3.20.1-1 [184 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7+b1 [640 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32.1-0.1 [91.9 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.20.1-1 [771 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.4 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [46.0 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-3 [31.8 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-3 [30.3 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-6 [97.8 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-6 [161 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libgeos-3.7.0 armhf 3.7.0-1 [630 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libgeos-c1v5 armhf 3.7.0-1 [284 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.2.0-1 [6986 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.2.0-1 [185 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-4 [66.2 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-4 [234 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.9.0-1 [38.6 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-7 [42.1 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-7 [144 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-7 [67.4 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-7 [44.4 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-7 [22.2 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-7 [28.7 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-3 [344 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-6 [387 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-4 [194 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.20-1 [89.6 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.40-1 [940 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libpoppler80 armhf 0.69.0-2 [1322 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 11.1-1+b1 [146 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.2+debian-1+b1 [707 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.2+dfsg-2+b2 [4847 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.7.0-1 [306 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.10-3 [107 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.10-3 [347 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-4 [93.4 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-3 [80.6 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-4 [310 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.9.0-1 [20.9 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-7 [939 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-6 [159 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.2.0-1 [228 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-4 [38.2 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.69.0-2 [23.0 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.69.0-2 [190 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 11.1-1+b1 [146 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.25.3-2 [678 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.2+debian-1+b1 [1466 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.5+dfsg-1+rpi1 [226 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.2+dfsg-2+b2 [6274 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libhttp-parser2.8 armhf 2.8.1-1 [19.1 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.3.7+dfsg-2 [274 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.4+dfsg-1 [5658 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.23.2-2 [94.4 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.5-1+b1 [301 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.5-1 [13.4 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 8.11.2~dfsg-1+rpi1 [4083 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.42.0-1 [2215 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.20.1-2 [1807 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.16.0-1 [2121 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi all 1.0.0-2 [789 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-14-1 [218 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.1-2 [25.0 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.18-1 [133 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1+b1 [3356 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.1.1-2+b2 [763 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.44.0-1 [4629 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.16-1 [1938 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-3-1 [737 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr all 1.5-3 [149 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.16.0-1 [1056 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
Get:252 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray armhf 0.8.0+dfsg-1 [1281 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.43-1-1 [4624 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf r-bioc-genefilter armhf 1.64.0-1 [1689 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB]
Get:258 http://172.17.0.1/private buster-staging/main armhf r-bioc-geneplotter all 1.60.0-1 [1548 kB]
Get:259 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get:260 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.18.1-1 [3692 kB]
Get:261 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.22.0-1 [596 kB]
Get:262 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.34.0+dfsg-1 [1765 kB]
Get:263 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1886 kB]
Get:264 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2+b1 [57.5 kB]
Get:265 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.2-2 [44.4 kB]
Get:266 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-2 [27.4 kB]
Get:267 http://172.17.0.1/private buster-staging/main armhf r-cran-bindr all 0.1.1-2 [18.1 kB]
Get:268 http://172.17.0.1/private buster-staging/main armhf r-cran-bindrcpp armhf 0.2.2-2 [62.2 kB]
Get:269 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.5-2 [507 kB]
Get:270 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-53-1 [193 kB]
Get:271 http://172.17.0.1/private buster-staging/main armhf r-cran-crayon all 1.3.4-4 [750 kB]
Get:272 http://172.17.0.1/private buster-staging/main armhf r-cran-cli all 1.0.1-1 [519 kB]
Get:273 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.7-1-1+b1 [525 kB]
Get:274 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-3 [471 kB]
Get:275 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.11.8+dfsg-1 [1286 kB]
Get:276 http://172.17.0.1/private buster-staging/main armhf r-cran-glue armhf 1.3.0-1 [91.5 kB]
Get:277 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.3.0-1 [73.5 kB]
Get:278 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.3.0.1-1 [1027 kB]
Get:279 http://172.17.0.1/private buster-staging/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB]
Get:280 http://172.17.0.1/private buster-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [126 kB]
Get:281 http://172.17.0.1/private buster-staging/main armhf r-cran-pillar all 1.3.0-1 [200 kB]
Get:282 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.4.2-3 [232 kB]
Get:283 http://172.17.0.1/private buster-staging/main armhf r-cran-purrr armhf 0.2.5-1 [265 kB]
Get:284 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyselect armhf 0.2.5-1 [113 kB]
Get:285 http://172.17.0.1/private buster-staging/main armhf r-cran-dplyr armhf 0.7.8-1 [1579 kB]
Get:286 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.12-1 [77.8 kB]
Get:287 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.71-1 [238 kB]
Get:288 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-3-2 [178 kB]
Get:289 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-3 [93.6 kB]
Get:290 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.1-3 [137 kB]
Get:291 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-51.1-1 [1103 kB]
Get:292 http://172.17.0.1/private buster-staging/main armhf r-cran-nlme armhf 3.1.137-1+b1 [2202 kB]
Get:293 http://172.17.0.1/private buster-staging/main armhf r-cran-mgcv armhf 1.8-26-1 [2557 kB]
Get:294 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-2 [811 kB]
Get:295 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.2.4-2 [8374 kB]
Get:296 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.3.1-2 [179 kB]
Get:297 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.3-2 [109 kB]
Get:298 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-3 [61.4 kB]
Get:299 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.5.0-1 [235 kB]
Get:300 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.3.0-3 [59.2 kB]
Get:301 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 1.0.0-2 [541 kB]
Get:302 http://172.17.0.1/private buster-staging/main armhf r-cran-withr all 2.1.2-3 [152 kB]
Get:303 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 3.1.0-1 [3740 kB]
Get:304 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-2 [1023 kB]
Get:305 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.7+dfsg-1 [39.7 kB]
Get:306 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b2 [2182 kB]
Get:307 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-13-1+b2 [886 kB]
Get:308 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2+b1 [109 kB]
Get:309 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.6-1 [34.8 kB]
Get:310 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.8+dfsg-1 [119 kB]
Get:311 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.2.0-1 [88.6 kB]
Get:312 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr all 1.20+dfsg-1 [809 kB]
Get:313 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-2 [167 kB]
Get:314 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.5-3 [632 kB]
Get:315 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB]
Get:316 http://172.17.0.1/private buster-staging/main armhf r-cran-rstudioapi all 0.8-1 [142 kB]
Get:317 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyr armhf 0.8.2-1 [411 kB]
Get:318 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.12-2 [293 kB]
Get:319 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.5.1-2 [1846 kB]
Get:320 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.1-1-3 [2951 kB]
Get:321 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpparmadillo armhf 0.9.200.4.0-1 [1044 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up r-bioc-annotate (1.60.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ...
Setting up r-cran-viridis (0.5.1-2) ...
Setting up r-bioc-genefilter (1.64.0-1) ...
Setting up r-cran-rpart (4.1-13-1+b2) ...
Setting up r-cran-dplyr (0.7.8-1) ...
Setting up r-bioc-geneplotter (1.60.0-1) ...
Setting up r-cran-tidyr (0.8.2-1) ...
Setting up r-cran-htmltable (1.12-2) ...
Setting up r-cran-hmisc (4.1-1-3) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
Setting up libharfbuzz-dev:armhf (2.1.1-1+rpi1) ...
Setting up debhelper (11.5.3) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git180724-3) ...
Setting up libgdal20 (2.3.2+dfsg-2+b2) ...
Setting up libicu-dev (63.1-4) ...
Setting up r-base-dev (3.5.1-2) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7+b1) ...
Setting up dh-r (20181126) ...
Setting up libxerces-c-dev (3.2.2+debian-1+b1) ...
Setting up libdap-dev:armhf (3.20.1-1) ...
Setting up libgdal-dev (2.3.2+dfsg-2+b2) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-8+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.10-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20181126 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 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r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.0-1 r-bioc-delayedarray_0.8.0+dfsg-1 r-bioc-genefilter_1.64.0-1 r-bioc-geneplotter_1.60.0-1 r-bioc-genomeinfodb_1.18.1-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicranges_1.34.0+dfsg-1 r-bioc-iranges_2.16.0-1 r-bioc-s4vectors_0.20.1-2 r-bioc-summarizedexperiment_1.12.0+dfsg-1 r-bioc-xvector_0.22.0-1 r-cran-acepack_1.4.1-2+b1 r-cran-assertthat_0.2.0-2 r-cran-backports_1.1.2-2 r-cran-base64enc_0.1-3-2 r-cran-bindr_0.1.1-2 r-cran-bindrcpp_0.2.2-2 r-cran-bit_1.1-14-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.1.1-2 r-cran-checkmate_1.8.5-2 r-cran-chron_2.3-53-1 r-cran-cli_1.0.1-1 r-cran-cluster_2.0.7-1-1+b1 r-cran-colorspace_1.3-2-3 r-cran-crayon_1.3.4-4 r-cran-data.table_1.11.8+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.18-1 r-cran-dplyr_0.7.8-1 r-cran-evaluate_0.12-1 r-cran-fansi_0.4.0-1 r-cran-foreign_0.8.71-1 r-cran-formatr_1.5-3 r-cran-formula_1.2-3-2 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.1.0-1 r-cran-glue_1.3.0-1 r-cran-gridextra_2.3-2 r-cran-gtable_0.2.0-3 r-cran-highr_0.7+dfsg-1 r-cran-hmisc_4.1-1-3 r-cran-htmltable_1.12-2 r-cran-htmltools_0.3.6-2 r-cran-htmlwidgets_1.3+dfsg-1 r-cran-jsonlite_1.5-3 r-cran-knitr_1.20+dfsg-1 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2+b2 r-cran-lazyeval_0.2.1-3 r-cran-littler_0.3.5-1+b1 r-cran-magrittr_1.5-5 r-cran-markdown_0.8+dfsg-1 r-cran-mass_7.3-51.1-1 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-26-1 r-cran-mime_0.6-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.137-1+b1 r-cran-nnet_7.3-12-2+b1 r-cran-pillar_1.3.0-1 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-plyr_1.8.4-2 r-cran-prettyunits_1.0.2-3 r-cran-purrr_0.2.5-1 r-cran-r6_2.3.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.0-1+b1 r-cran-rcpparmadillo_0.9.200.4.0-1 r-cran-rcurl_1.95-4.11-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.3.0.1-1 r-cran-rpart_4.1-13-1+b2 r-cran-rsqlite_2.1.1-2+b2 r-cran-rstudioapi_0.8-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.2.4-2 r-cran-stringr_1.3.1-2 r-cran-survival_2.43-1-1 r-cran-tibble_1.4.2-3 r-cran-tidyr_0.8.2-1 r-cran-tidyselect_0.2.5-1 r-cran-utf8_1.1.4-1+b1 r-cran-viridis_0.5.1-2 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xml_3.98-1.16-1 r-cran-xtable_1:1.8-3-1 r-cran-yaml_2.2.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-13+rpi1 systemd-sysv_239-13+rpi1 sysvinit-utils_2.92~beta-2 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 ucf_3.0038 udev_239-13+rpi1 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.32.1-0.1 uuid-dev_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 30 22:17:53 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.22.1+dfsg-2.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg
dpkg-source: info: unpacking r-bioc-deseq2_1.22.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-deseq2_1.22.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-locfit
dpkg-source: info: applying fix_autopkgtest.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-2793cf37-b074-488a-a7aa-15eccb2da3b4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.22.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: DESeq2 Version: 1.22.1
I: Building using R version 3.5.1-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Fri, 30 Nov 2018 23:08:56 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-deseq2-1.22.1\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-deseq2-1.22.1\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 30 Nov 2018 23:08:56 +0100'"
* installing *source* package 'DESeq2' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DESeq2.cpp -o DESeq2.o
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
W: Cannot find a debian package for Suggests:tximport
W: Cannot find a debian package for Suggests:tximportData
I: Using r-cran-readr for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
I: BioConductor API version: r-api-bioc-3.8
Create lintian-override for package-contains-documentation-outside-usr-share-doc
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs/DESeq2.so was not linked against libgfortran.so.5 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.22.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.22.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-deseq2_1.22.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-03T05:57:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-deseq2_1.22.1+dfsg-2_armhf.changes:
------------------------------------------
Format: 1.8
Date: Fri, 30 Nov 2018 23:08:56 +0100
Source: r-bioc-deseq2
Binary: r-bioc-deseq2
Architecture: armhf
Version: 1.22.1+dfsg-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
r-bioc-deseq2 (1.22.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Fix autopkgtest.
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-deseq2-dbgsym_1.22.1+dfsg-2_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 905956 bytes: control archive=544 bytes.
400 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-deseq2-dbgsym
Source: r-bioc-deseq2
Version: 1.22.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 931
Depends: r-bioc-deseq2 (= 1.22.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-deseq2
Build-Ids: c7caa453095176afd24ab891d65e2fc0112ace85
drwxr-xr-x root/root 0 2018-11-30 22:08 ./
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/lib/debug/.build-id/c7/
-rw-r--r-- root/root 942436 2018-11-30 22:08 ./usr/lib/debug/.build-id/c7/caa453095176afd24ab891d65e2fc0112ace85.debug
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/share/
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-11-30 22:08 ./usr/share/doc/r-bioc-deseq2-dbgsym -> r-bioc-deseq2
r-bioc-deseq2_1.22.1+dfsg-2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 1197156 bytes: control archive=2852 bytes.
1180 bytes, 15 lines control
5953 bytes, 70 lines md5sums
Package: r-bioc-deseq2
Version: 1.22.1+dfsg-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1661
Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-api-bioc-3.8, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DESeq2/
Description: R package for RNA-Seq Differential Expression Analysis
Differential gene expression analysis based on the negative binomial
distribution. Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential expression based
on a model using the negative binomial distribution.
drwxr-xr-x root/root 0 2018-11-30 22:08 ./
drwxr-xr-x root/root 0 2018-11-30 22:08 ./usr/
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| Summary |
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Build Architecture: armhf
Build-Space: 6856
Build-Time: 128
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1062
Job: r-bioc-deseq2_1.22.1+dfsg-2
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 1206
Source-Version: 1.22.1+dfsg-2
Space: 6856
Status: successful
Version: 1.22.1+dfsg-2
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Finished at 2018-12-03T05:57:59Z
Build needed 00:20:06, 6856k disk space