Raspbian Package Auto-Building

r-bioc-deseq2 → 1.22.1+dfsg-1 → armhf → 2018-11-17 07:43:17

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| r-bioc-deseq2 1.22.1+dfsg-1 (armhf)          Sat, 17 Nov 2018 07:13:24 +0000 |
+==============================================================================+

Package: r-bioc-deseq2
Version: 1.22.1+dfsg-1
Source Version: 1.22.1+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-ddecb8f3-5af5-4de6-af6b-bfba0dfda9fa' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 8s (2873 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 586 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-1 (dsc) [2437 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-1 (tar) [577 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.22.1+dfsg-1 (diff) [5968 B]
Fetched 586 kB in 0s (4382 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-74Ftds/r-bioc-deseq2-1.22.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-74Ftds' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0mt758/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0mt758/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0mt758/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
  libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-cran-rcpparmadillo, libgdal-dev, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0)
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-cran-rcpparmadillo, libgdal-dev, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-0mt758/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Sources [623 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ Packages [706 B]
Fetched 2662 B in 0s (13.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
  libnss-systemd libpam-systemd libperl5.26 libsasl2-modules perl-modules-5.26
  systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-8 dctrl-tools
  debhelper default-libmysqlclient-dev dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-mathjax g++ g++-8 gcc gcc-7-base gcc-8 gcc-8-base
  gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
  gir1.2-harfbuzz-0.0 groff-base hdf5-helpers icu-devtools intltool-debian
  libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo9
  libarpack2 libarpack2-dev libasan5 libatomic1 libblas-dev libblas3
  libboost-dev libboost1.62-dev libbsd0 libbz2-dev libc-ares2 libcairo2
  libcc1-0 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
  libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
  libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1-dev
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
  libgcc-8-dev libgcc1 libgdal-dev libgdal20 libgeos-3.7.0 libgeos-c1v5
  libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran4
  libgfortran5 libgif-dev libgif7 libgirepository-1.0-1 libglib2.0-0
  libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgomp1
  libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
  libhdf5-cpp-100 libhdf5-dev libhttp-parser2.8 libice6 libicu-dev
  libicu-le-hb-dev libicu-le-hb0 libicu60 libicu63 libiculx63 libjbig-dev
  libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap
  libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
  libjson-c-dev libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1
  libkmlengine1 libkmlregionator1 libkmlxsd1 liblapack-dev liblapack3
  liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1
  libmariadbclient-dev libmariadbclient-dev-compat libmariadbclient18
  libminizip-dev libminizip1 libmpdec2 libncurses-dev libncurses5-dev
  libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2
  libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
  libpoppler-dev libpoppler-private-dev libpoppler80 libpopt0 libpq-dev libpq5
  libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
  libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
  librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-0
  libsqlite3-dev libssh2-1 libstdc++-8-dev libstdc++6 libsuperlu-dev
  libsuperlu5 libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
  libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtk8.6 libtool libubsan1
  liburiparser-dev liburiparser1 libuv1 libwebp-dev libwebp6 libwebpdemux2
  libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
  libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev littler m4
  man-db mime-support mysql-common node-highlight.js node-normalize.css nodejs
  odbcinst odbcinst1debian2 pkg-config po-debconf proj-data python3
  python3-distutils python3-lib2to3 python3-minimal python3.6
  python3.6-minimal r-base-core r-base-dev r-bioc-annotate
  r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
  r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
  r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
  r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
  r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
  r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xml r-cran-xtable r-cran-yaml ucf unixodbc-dev unzip uuid-dev
  x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cpp-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
  gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg
  libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg
  libcoarrays-dev groff libitpp-dev liblapack-doc libboost-doc
  libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev
  libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-filesystem1.62-dev libboost-graph1.62-dev
  libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
  libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
  libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-regex1.62-dev
  libboost-serialization1.62-dev libboost-signals1.62-dev
  libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
  libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
  libboost1.62-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc
  libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
  libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
  libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
  libgraphite2-utils libhdf4-doc hdf4-tools libhdf5-doc icu-doc
  fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils libtool-doc
  liblzma-doc ncurses-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql
  tdsodbc unixodbc-bin ogdi-bin libfreetype6-dev postgresql-doc-11 proj-bin
  readline-doc sqlite3-doc libstdc++-8-doc libsuperlu-doc tcl8.6 tk8.6 gcj-jdk
  libxerces-c-doc m4-doc apparmor less www-browser libjs-html5shiv
  libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv
  python3.6-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib
  r-base-html texlive-base texlive-latex-base texlive-generic-recommended
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biostrings
  r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-rsamtools r-bioc-affy
  r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-bioc-variantannotation
  r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-bioc-bsgenome
  r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub
  r-bioc-edger r-cran-rmarkdown r-cran-devtools r-cran-testthat r-cran-webshot
  r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-dichromat
  r-cran-shiny r-cran-shinyjs r-cran-curl r-cran-r.utils r-cran-xts r-cran-zoo
  r-cran-rmysql r-cran-callr r-cran-dbplyr r-cran-lubridate r-cran-mgcv
  r-cran-rpostgresql r-cran-maps r-cran-maptools r-cran-multcomp
  r-cran-quantreg r-cran-sf r-cran-svglite r-cran-forcats r-cran-httr
  r-cran-rgl r-cran-png r-cran-xml2 r-cran-getopt r-cran-doparallel
  r-cran-iterators r-cran-inline r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
  r-cran-spdep r-cran-plm
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin
  shared-mime-info xdg-user-dirs javascript-common libpng-tools poppler-data
  publicsuffix nodejs-doc libmail-sendmail-perl r-recommended r-doc-html
  r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel
  r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-cran-class r-cran-testthat
  r-cran-fastmatch r-cran-mockery r-cran-hms r-cran-bit64 r-cran-testit
  r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-tikzdevice
  r-cran-tinytex r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest
  r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
  file fontconfig fontconfig-config fonts-dejavu-core fonts-mathjax gcc-7-base
  gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
  gir1.2-harfbuzz-0.0 groff-base hdf5-helpers icu-devtools intltool-debian
  libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo9
  libarpack2 libarpack2-dev libblas-dev libblas3 libboost-dev libboost1.62-dev
  libbsd0 libbz2-dev libc-ares2 libcairo2 libcharls-dev libcharls1 libcroco3
  libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
  libdapclient6v5 libdapserver7v5 libdatrie1 libelf1 libepsilon-dev
  libepsilon1 libexpat1-dev libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfreexl-dev libfreexl1
  libfribidi0 libfyba-dev libfyba0 libgdal-dev libgdal20 libgeos-3.7.0
  libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev
  libgfortran4 libgfortran5 libgif-dev libgif7 libgirepository-1.0-1
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
  libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt
  libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhttp-parser2.8
  libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libicu63
  libiculx63 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libjs-bootstrap libjs-highlight.js libjs-jquery
  libjs-jquery-datatables libjs-mathjax libjson-c-dev libkml-dev libkmlbase1
  libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1
  liblapack-dev liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev
  libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
  libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
  libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
  libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler80
  libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
  libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
  libreadline-dev librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7
  libsqlite3-dev libssh2-1 libsuperlu-dev libsuperlu5 libswitch-perl libsz2
  libtcl8.6 libthai-data libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5
  libtk8.6 libtool liburiparser-dev liburiparser1 libuv1 libwebp-dev libwebp6
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6
  libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
  littler m4 man-db mime-support mysql-common node-highlight.js
  node-normalize.css nodejs odbcinst odbcinst1debian2 pkg-config po-debconf
  proj-data python3 python3-distutils python3-lib2to3 python3-minimal
  python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-annotate
  r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
  r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
  r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-xvector r-cran-acepack r-cran-assertthat
  r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron
  r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-data.table
  r-cran-dbi r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xml r-cran-xtable r-cran-yaml
  sbuild-build-depends-r-bioc-deseq2-dummy ucf unixodbc-dev unzip uuid-dev
  x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  cpp cpp-8 g++ g++-8 gcc gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0
  libgcc-8-dev libgcc1 libgomp1 libsqlite3-0 libstdc++-8-dev libstdc++6
  libubsan1
17 upgraded, 354 newly installed, 0 to remove and 19 not upgraded.
Need to get 254 MB/269 MB of archives.
After this operation, 813 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0mt758/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-9+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-9+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-9+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-9+rpi1 [64.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-9+rpi1 [8096 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-9+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-9+rpi1 [5474 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-9+rpi1 [30.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-9+rpi1 [5942 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-9+rpi1 [5847 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-9+rpi1 [598 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-9+rpi1 [1564 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-9+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf node-normalize.css all 8.0.1-1 [12.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libsqlite3-0 armhf 3.25.3-1 [544 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf g++ armhf 4:8.2.0-2+rpi1 [1628 B]
Get:43 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:8.2.0-2+rpi1 [5196 B]
Get:44 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:8.2.0-2+rpi1 [19.5 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-4 [7974 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git180724-3 [12.9 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.37-1 [683 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.37-1 [1533 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.37-1 [28.2 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:67 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:109 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libiculx63 armhf 63.1-4 [26.3 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-4 [166 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.9.0-1+rpi1 [650 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.9.0-1+rpi1 [657 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1+rpi1 [665 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.9.0-1+rpi1 [944 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git180724-3 [28.5 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-4 [8865 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:136 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.4+dfsg-1 [2209 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.2+dfsg-2 [733 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.6.3-1+rpi1 [81.2 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libarmadillo9 armhf 1:9.100.6+dfsg-1 [86.3 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.6.3-1+rpi1 [89.3 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:9.100.6+dfsg-1 [357 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-10+b1 [7003 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:152 http://172.17.0.1/private buster-staging/main armhf libc-ares2 armhf 1.14.0-1 [80.4 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libcharls1 armhf 1.1.0+dfsg-3 [44.4 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-3 [21.8 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.61.0-1 [281 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.61.0-1 [353 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libdap25 armhf 3.20.0-1 [468 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libdapserver7v5 armhf 3.20.0-1 [126 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libdapclient6v5 armhf 3.20.0-1 [183 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32.1-0.1 [91.9 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.20.0-1 [768 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.4 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [46.0 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-3 [31.8 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-3 [30.3 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-6 [97.8 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-6 [161 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libgeos-3.7.0 armhf 3.7.0-1 [630 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libgeos-c1v5 armhf 3.7.0-1 [284 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.2.0-1 [6986 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.2.0-1 [185 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-4 [66.2 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-4 [234 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.8.6-1 [36.0 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-7 [42.1 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-7 [144 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-7 [67.4 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-7 [44.4 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-7 [22.2 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-7 [28.7 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-3 [344 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-6 [387 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-4 [194 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.20-1 [89.6 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.39-1 [937 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libpoppler80 armhf 0.69.0-2 [1322 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 11.1-1 [146 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.2+debian-1 [707 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.2+dfsg-2+b2 [4847 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.7.0-1 [306 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.9+git181026-1 [100 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libtiff5-dev armhf 4.0.9+git181026-1 [340 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.9+git181026-1 [96.6 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-4 [93.4 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-3 [80.6 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-4 [310 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.8.6-1 [18.3 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-7 [939 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-6 [159 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.2.0-1 [228 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-4 [38.2 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.69.0-2 [23.0 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.69.0-2 [190 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 11.1-1 [146 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.25.3-1 [677 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.2+debian-1 [1466 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.5+dfsg-1+rpi1 [226 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.2+dfsg-2+b2 [6274 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libhttp-parser2.8 armhf 2.8.1-1 [19.1 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.3.7+dfsg-2 [274 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.4+dfsg-1 [5658 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.23.2-1 [94.3 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.5-1 [301 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.5-1 [13.4 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 8.11.2~dfsg-1+b1 [4088 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-1 [644 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.42.0-1 [2215 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1+b1 [1799 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.12-1 [2130 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi all 1.0.0-2 [789 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-14-1 [218 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-3 [433 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.1-2 [25.0 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.18-1 [133 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-2 [38.6 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:252 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1 [3356 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.1.1-2+b2 [763 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.44.0-1 [4629 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.16-1 [1938 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-3-1 [737 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:258 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB]
Get:259 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB]
Get:260 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr all 1.5-3 [149 kB]
Get:261 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:262 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:263 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:264 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:265 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.16.0-1 [1056 kB]
Get:266 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
Get:267 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.6.6+dfsg-1 [1056 kB]
Get:268 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:269 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:270 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.43-1-1 [4624 kB]
Get:271 http://172.17.0.1/private buster-staging/main armhf r-bioc-genefilter armhf 1.64.0-1 [1689 kB]
Get:272 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB]
Get:273 http://172.17.0.1/private buster-staging/main armhf r-bioc-geneplotter all 1.60.0-1 [1548 kB]
Get:274 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get:275 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.18.0-1 [3694 kB]
Get:276 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.20.0-2+b1 [592 kB]
Get:277 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.32.7-1 [1941 kB]
Get:278 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.10.1+dfsg-1 [1882 kB]
Get:279 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2+b1 [57.5 kB]
Get:280 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.2-2 [44.4 kB]
Get:281 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-2 [27.4 kB]
Get:282 http://172.17.0.1/private buster-staging/main armhf r-cran-bindr all 0.1.1-2 [18.1 kB]
Get:283 http://172.17.0.1/private buster-staging/main armhf r-cran-bindrcpp armhf 0.2.2-2 [62.2 kB]
Get:284 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.5-2 [507 kB]
Get:285 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-53-1 [193 kB]
Get:286 http://172.17.0.1/private buster-staging/main armhf r-cran-crayon all 1.3.4-4 [750 kB]
Get:287 http://172.17.0.1/private buster-staging/main armhf r-cran-cli all 1.0.1-1 [519 kB]
Get:288 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.7-1-1+b1 [525 kB]
Get:289 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-3 [471 kB]
Get:290 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.11.8+dfsg-1 [1286 kB]
Get:291 http://172.17.0.1/private buster-staging/main armhf r-cran-glue armhf 1.3.0-1 [91.5 kB]
Get:292 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.3.0-1 [73.5 kB]
Get:293 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.2.2-1 [807 kB]
Get:294 http://172.17.0.1/private buster-staging/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB]
Get:295 http://172.17.0.1/private buster-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [126 kB]
Get:296 http://172.17.0.1/private buster-staging/main armhf r-cran-pillar all 1.3.0-1 [200 kB]
Get:297 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.4.2-3 [232 kB]
Get:298 http://172.17.0.1/private buster-staging/main armhf r-cran-purrr armhf 0.2.5-1 [265 kB]
Get:299 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyselect armhf 0.2.5-1 [113 kB]
Get:300 http://172.17.0.1/private buster-staging/main armhf r-cran-dplyr armhf 0.7.7-1 [1579 kB]
Get:301 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.12-1 [77.8 kB]
Get:302 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.71-1 [238 kB]
Get:303 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-3-2 [178 kB]
Get:304 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-3 [93.6 kB]
Get:305 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.1-3 [137 kB]
Get:306 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-51.1-1 [1103 kB]
Get:307 http://172.17.0.1/private buster-staging/main armhf r-cran-nlme armhf 3.1.137-1+b1 [2202 kB]
Get:308 http://172.17.0.1/private buster-staging/main armhf r-cran-mgcv armhf 1.8-25-1 [2554 kB]
Get:309 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-2 [811 kB]
Get:310 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.2.4-1 [646 kB]
Get:311 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.3.1-2 [179 kB]
Get:312 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.3-2 [109 kB]
Get:313 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-3 [61.4 kB]
Get:314 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.5.0-1 [235 kB]
Get:315 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.3.0-3 [59.2 kB]
Get:316 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 1.0.0-2 [541 kB]
Get:317 http://172.17.0.1/private buster-staging/main armhf r-cran-withr all 2.1.2-3 [152 kB]
Get:318 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 3.1.0-1 [3740 kB]
Get:319 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-2 [1023 kB]
Get:320 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.7+dfsg-1 [39.7 kB]
Get:321 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b2 [2182 kB]
Get:322 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-13-1+b2 [886 kB]
Get:323 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2+b1 [109 kB]
Get:324 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.6-1 [34.8 kB]
Get:325 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.8+dfsg-1 [119 kB]
Get:326 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.2.0-1 [88.6 kB]
Get:327 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr all 1.20+dfsg-1 [809 kB]
Get:328 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-2 [167 kB]
Get:329 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.5-3 [632 kB]
Get:330 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB]
Get:331 http://172.17.0.1/private buster-staging/main armhf r-cran-rstudioapi all 0.8-1 [142 kB]
Get:332 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyr armhf 0.8.2-1 [411 kB]
Get:333 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.12-2 [293 kB]
Get:334 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.5.1-2 [1846 kB]
Get:335 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.1-1-3 [2951 kB]
Get:336 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpparmadillo armhf 0.9.200.4.0-1 [1044 kB]
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Setting up nodejs (8.11.2~dfsg-1+b1) ...
update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode
Setting up libarmadillo9 (1:9.100.6+dfsg-1) ...
Setting up gfortran-8 (8.2.0-9+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-4+b2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up gcc (4:8.2.0-2+rpi1) ...
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Setting up libglib2.0-dev:armhf (2.58.1-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libkmlregionator1:armhf (1.3.0-7) ...
Setting up libpango-1.0-0:armhf (1.42.4-3) ...
Setting up libarpack2-dev:armhf (3.6.3-1+rpi1) ...
Setting up libspatialite7:armhf (4.3.0a-5+b2) ...
Setting up g++ (4:8.2.0-2+rpi1) ...
Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ...
Setting up libnetcdf-dev (1:4.6.1-3) ...
Setting up libxerces-c3.2:armhf (3.2.2+debian-1) ...
Setting up libarmadillo-dev (1:9.100.6+dfsg-1) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libpoppler-private-dev:armhf (0.69.0-2) ...
Setting up libdap25:armhf (3.20.0-1) ...
Setting up node-highlight.js (9.12.0+dfsg1-4) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libkml-dev:armhf (1.3.0-7) ...
Setting up libhdf4-alt-dev (4.2.13-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up libdapclient6v5:armhf (3.20.0-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libdapserver7v5:armhf (3.20.0-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up r-base-core (3.5.1-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-withr (2.1.2-3) ...
Setting up r-cran-littler (0.3.5-1) ...
Setting up littler (0.3.5-1) ...
Setting up r-cran-fansi (0.4.0-1) ...
Setting up r-cran-nnet (7.3-12-2+b1) ...
Setting up r-cran-crayon (1.3.4-4) ...
Setting up r-cran-rstudioapi (0.8-1) ...
Setting up r-cran-gtable (0.2.0-3) ...
Setting up r-cran-acepack (1.4.1-2+b1) ...
Setting up r-bioc-biocgenerics (0.28.0-1) ...
Setting up r-cran-assertthat (0.2.0-2) ...
Setting up r-bioc-biobase (2.42.0-1) ...
Setting up r-cran-evaluate (0.12-1) ...
Setting up r-cran-jsonlite (1.5-3) ...
Setting up r-cran-rcolorbrewer (1.1-2-2) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-cran-formatr (1.5-3) ...
Setting up r-cran-dbi (1.0.0-2) ...
Setting up r-cran-gridextra (2.3-2) ...
Setting up r-cran-stringi (1.2.4-1) ...
Setting up r-cran-pkgkitten (0.1.4-2) ...
Setting up r-cran-futile.options (1.0.1-2) ...
Setting up r-cran-rcpp (1.0.0-1) ...
Setting up r-cran-labeling (0.3-3) ...
Setting up r-cran-r6 (2.3.0-1) ...
Setting up r-cran-colorspace (1.3-2-3) ...
Setting up r-cran-utf8 (1.1.4-1+b1) ...
Setting up r-cran-mass (7.3-51.1-1) ...
Setting up r-cran-plyr (1.8.4-2) ...
Setting up r-cran-rcurl (1.95-4.11-1) ...
Setting up r-cran-mime (0.6-1) ...
Setting up r-cran-yaml (2.2.0-1) ...
Setting up r-cran-rlang (0.2.2-1) ...
Setting up r-cran-digest (0.6.18-1) ...
Setting up r-cran-xtable (1:1.8-3-1) ...
Setting up r-cran-cli (1.0.1-1) ...
Setting up r-cran-bit (1.1-14-1) ...
Setting up r-cran-magrittr (1.5-5) ...
Setting up r-cran-cluster (2.0.7-1-1+b1) ...
Setting up r-cran-data.table (1.11.8+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.2-1) ...
Setting up r-cran-lambda.r (1.2.3-2) ...
Setting up r-cran-matrixstats (0.54.0-1) ...
Setting up r-cran-snow (1:0.4.3-1) ...
Setting up r-cran-glue (1.3.0-1) ...
Setting up r-cran-memoise (1.1.0-2) ...
Setting up r-bioc-s4vectors (0.18.3-1+b1) ...
Setting up r-cran-bit64 (0.9-7-3) ...
Setting up r-cran-xml (3.98-1.16-1) ...
Setting up r-cran-bindr (0.1.1-2) ...
Setting up r-cran-highr (0.7+dfsg-1) ...
Setting up r-cran-viridislite (0.3.0-3) ...
Setting up r-cran-chron (2.3-53-1) ...
Setting up r-cran-bindrcpp (0.2.2-2) ...
Setting up r-cran-formula (1.2-3-2) ...
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-base64enc (0.1-3-2) ...
Setting up r-cran-lazyeval (0.2.1-3) ...
Setting up r-cran-latticeextra (0.6-28-2+b2) ...
Setting up r-cran-nlme (3.1.137-1+b1) ...
Setting up r-cran-backports (1.1.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.0-1) ...
Setting up r-cran-foreign (0.8.71-1) ...
Setting up r-cran-stringr (1.3.1-2) ...
Setting up r-cran-prettyunits (1.0.2-3) ...
Setting up r-cran-htmltools (0.3.6-2) ...
Setting up r-cran-markdown (0.8+dfsg-1) ...
Setting up r-cran-rcpparmadillo (0.9.200.4.0-1) ...
Setting up r-cran-munsell (0.5.0-1) ...
Setting up r-cran-htmlwidgets (1.3+dfsg-1) ...
Setting up r-cran-blob (1.1.1-2) ...
Setting up r-cran-pillar (1.3.0-1) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up r-cran-reshape2 (1.4.3-2) ...
Setting up r-cran-rsqlite (2.1.1-2+b2) ...
Setting up r-bioc-iranges (2.14.12-1) ...
Setting up r-cran-scales (1.0.0-2) ...
Setting up r-cran-tibble (1.4.2-3) ...
Setting up r-bioc-biocparallel (1.16.0-1) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-bioc-delayedarray (0.6.6+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.18.0-1) ...
Setting up r-cran-checkmate (1.8.5-2) ...
Setting up r-cran-knitr (1.20+dfsg-1) ...
Setting up r-bioc-xvector (0.20.0-2+b1) ...
Setting up r-cran-purrr (0.2.5-1) ...
Setting up r-cran-mgcv (1.8-25-1) ...
Setting up r-bioc-annotationdbi (1.44.0-1) ...
Setting up r-cran-ggplot2 (3.1.0-1) ...
Setting up r-cran-survival (2.43-1-1) ...
Setting up r-bioc-genomicranges (1.32.7-1) ...
Setting up r-cran-tidyselect (0.2.5-1) ...
Setting up r-bioc-annotate (1.60.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.10.1+dfsg-1) ...
Setting up r-cran-viridis (0.5.1-2) ...
Setting up r-bioc-genefilter (1.64.0-1) ...
Setting up r-cran-rpart (4.1-13-1+b2) ...
Setting up r-cran-dplyr (0.7.7-1) ...
Setting up r-bioc-geneplotter (1.60.0-1) ...
Setting up r-cran-tidyr (0.8.2-1) ...
Setting up r-cran-htmltable (1.12-2) ...
Setting up r-cran-hmisc (4.1-1-3) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
Setting up libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Setting up debhelper (11.5.3) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git180724-3) ...
Setting up libgdal20 (2.3.2+dfsg-2+b2) ...
Setting up libicu-dev (63.1-4) ...
Setting up r-base-dev (3.5.1-1) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7) ...
Setting up dh-r (20181101) ...
Setting up libxerces-c-dev (3.2.2+debian-1) ...
Setting up libdap-dev:armhf (3.20.0-1) ...
Setting up libgdal-dev (2.3.2+dfsg-2+b2) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 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libip4tc0_1.8.1-2 libisl19_0.20-2 libjbig-dev_2.1-3.1+b2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjs-bootstrap_3.3.7+dfsg-2 libjs-highlight.js_9.12.0+dfsg1-4 libjs-jquery_3.2.1-1 libjs-jquery-datatables_1.10.19+dfsg-1 libjs-mathjax_2.7.4+dfsg-1 libjson-c-dev_0.12.1-1.3 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkml-dev_1.3.0-7 libkmlbase1_1.3.0-7 libkmlconvenience1_1.3.0-7 libkmldom1_1.3.0-7 libkmlengine1_1.3.0-7 libkmlregionator1_1.3.0-7 libkmlxsd1_1.3.0-7 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 liblcms2-2_2.9-3 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libltdl-dev_2.4.6-6 libltdl7_2.4.6-6 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmariadbclient-dev_1:10.1.37-1 libmariadbclient-dev-compat_1:10.1.37-1 libmariadbclient18_1:10.1.37-1 libminizip-dev_1.1-8 libminizip1_1.1-8 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnetcdf-dev_1:4.6.1-3 libnetcdf13_1:4.6.1-3 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libnspr4_2:4.20-1 libnss-systemd_239-10+rpi1 libnss3_2:3.39-1 libodbc1_2.3.6-0.1 libogdi3.2_3.2.1+ds-4 libogdi3.2-dev_3.2.1+ds-4 libopenjp2-7_2.3.0-1 libopenjp2-7-dev_2.3.0-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libpoppler-dev_0.69.0-2 libpoppler-private-dev_0.69.0-2 libpoppler80_0.69.0-2 libpopt0_1.16-11 libpq-dev_11.1-1 libpq5_11.1-1 libprocps7_2:3.3.15-2 libproj-dev_5.2.0-1 libproj13_5.2.0-1 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libqhull-dev_2015.2-4 libqhull-r7_2015.2-4 libqhull7_2015.2-4 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libspatialite-dev_4.3.0a-5+b2 libspatialite7_4.3.0a-5+b2 libsqlite3-0_3.25.3-1 libsqlite3-dev_3.25.3-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libsuperlu-dev_5.2.1+dfsg1-3 libsuperlu5_5.2.1+dfsg1-3 libswitch-perl_2.17-2 libsystemd0_239-10+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff-dev_4.0.9+git181026-1 libtiff5_4.0.9+git181026-1 libtiff5-dev_4.0.9+git181026-1 libtiffxx5_4.0.9+git181026-1 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 liburiparser-dev_0.8.6-1 liburiparser1_0.8.6-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libuv1_1.23.2-1 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.2+debian-1 libxerces-c3.2_3.2.2+debian-1 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxml2-dev_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd-dev_1.3.5+dfsg-1+rpi1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 littler_0.3.5-1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 mysql-common_5.8+1.0.4 nano_3.1-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 node-highlight.js_9.12.0+dfsg1-4 node-normalize.css_8.0.1-1 nodejs_8.11.2~dfsg-1+b1 odbcinst_2.3.6-0.1 odbcinst1debian2_2.3.6-0.1 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 proj-data_5.2.0-1 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-bioc-annotate_1.60.0+dfsg-1 r-bioc-annotationdbi_1.44.0-1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-biocparallel_1.16.0-1 r-bioc-delayedarray_0.6.6+dfsg-1 r-bioc-genefilter_1.64.0-1 r-bioc-geneplotter_1.60.0-1 r-bioc-genomeinfodb_1.18.0-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicranges_1.32.7-1 r-bioc-iranges_2.14.12-1 r-bioc-s4vectors_0.18.3-1+b1 r-bioc-summarizedexperiment_1.10.1+dfsg-1 r-bioc-xvector_0.20.0-2+b1 r-cran-acepack_1.4.1-2+b1 r-cran-assertthat_0.2.0-2 r-cran-backports_1.1.2-2 r-cran-base64enc_0.1-3-2 r-cran-bindr_0.1.1-2 r-cran-bindrcpp_0.2.2-2 r-cran-bit_1.1-14-1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.1.1-2 r-cran-checkmate_1.8.5-2 r-cran-chron_2.3-53-1 r-cran-cli_1.0.1-1 r-cran-cluster_2.0.7-1-1+b1 r-cran-colorspace_1.3-2-3 r-cran-crayon_1.3.4-4 r-cran-data.table_1.11.8+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.18-1 r-cran-dplyr_0.7.7-1 r-cran-evaluate_0.12-1 r-cran-fansi_0.4.0-1 r-cran-foreign_0.8.71-1 r-cran-formatr_1.5-3 r-cran-formula_1.2-3-2 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.1.0-1 r-cran-glue_1.3.0-1 r-cran-gridextra_2.3-2 r-cran-gtable_0.2.0-3 r-cran-highr_0.7+dfsg-1 r-cran-hmisc_4.1-1-3 r-cran-htmltable_1.12-2 r-cran-htmltools_0.3.6-2 r-cran-htmlwidgets_1.3+dfsg-1 r-cran-jsonlite_1.5-3 r-cran-knitr_1.20+dfsg-1 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2+b2 r-cran-lazyeval_0.2.1-3 r-cran-littler_0.3.5-1 r-cran-magrittr_1.5-5 r-cran-markdown_0.8+dfsg-1 r-cran-mass_7.3-51.1-1 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-25-1 r-cran-mime_0.6-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.137-1+b1 r-cran-nnet_7.3-12-2+b1 r-cran-pillar_1.3.0-1 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-plyr_1.8.4-2 r-cran-prettyunits_1.0.2-3 r-cran-purrr_0.2.5-1 r-cran-r6_2.3.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.0-1 r-cran-rcpparmadillo_0.9.200.4.0-1 r-cran-rcurl_1.95-4.11-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.2.2-1 r-cran-rpart_4.1-13-1+b2 r-cran-rsqlite_2.1.1-2+b2 r-cran-rstudioapi_0.8-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.2.4-1 r-cran-stringr_1.3.1-2 r-cran-survival_2.43-1-1 r-cran-tibble_1.4.2-3 r-cran-tidyr_0.8.2-1 r-cran-tidyselect_0.2.5-1 r-cran-utf8_1.1.4-1+b1 r-cran-viridis_0.5.1-2 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xml_3.98-1.16-1 r-cran-xtable_1:1.8-3-1 r-cran-yaml_2.2.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-10+rpi1 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.32.1-0.1 uuid-dev_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Nov 11 16:20:24 2018 UTC
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv:                issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.22.1+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg
dpkg-source: info: unpacking r-bioc-deseq2_1.22.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-deseq2_1.22.1+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-locfit

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-ddecb8f3-5af5-4de6-af6b-bfba0dfda9fa
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.22.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build-arch
dh build-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_installdirs -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: DESeq2 Version: 1.22.1
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 11 Nov 2018 16:53:53 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-deseq2-1.22.1\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-deseq2-1.22.1\+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 11 Nov 2018 16:53:53 +0100'"
* installing *source* package 'DESeq2' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
g++  -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c DESeq2.cpp -o DESeq2.o
g++  -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-deseq2-1.22.1+dfsg/debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
W: Cannot find a debian package for Suggests:tximport
W: Cannot find a debian package for Suggests:tximportData
I: Using r-cran-readr for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
Create lintian-override for package-contains-documentation-outside-usr-share-doc
   dh_install -a -O--buildsystem=R
   dh_installdocs -a -O--buildsystem=R
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dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs/DESeq2.so was not linked against libgfortran.so.5 (it uses none of the library's symbols)
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dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.22.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.22.1+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-17T07:43:14Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-deseq2_1.22.1+dfsg-1_armhf.changes:
------------------------------------------

Format: 1.8
Date: Sun, 11 Nov 2018 16:53:53 +0100
Source: r-bioc-deseq2
Binary: r-bioc-deseq2
Architecture: armhf
Version: 1.22.1+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
 r-bioc-deseq2 (1.22.1+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Andreas Tille ]
   * There is no need to force extra Build-Depends since #900974 was
     closed
 .
   [ Dylan Aïssi ]
   * New upstream version
   * Standards-Version: 4.2.1
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-deseq2-dbgsym_1.22.1+dfsg-1_armhf.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 905752 bytes: control archive=544 bytes.
     400 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-deseq2-dbgsym
 Source: r-bioc-deseq2
 Version: 1.22.1+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 931
 Depends: r-bioc-deseq2 (= 1.22.1+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-deseq2
 Build-Ids: 65ac6035b4b5267818084398e86986bddb0a934d

drwxr-xr-x root/root         0 2018-11-11 15:53 ./
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/lib/
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root    942444 2018-11-11 15:53 ./usr/lib/debug/.build-id/65/ac6035b4b5267818084398e86986bddb0a934d.debug
drwxr-xr-x root/root         0 2018-11-11 15:53 ./usr/share/
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lrwxrwxrwx root/root         0 2018-11-11 15:53 ./usr/share/doc/r-bioc-deseq2-dbgsym -> r-bioc-deseq2


r-bioc-deseq2_1.22.1+dfsg-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 1197732 bytes: control archive=2852 bytes.
    1175 bytes,    16 lines      control              
    5953 bytes,    70 lines      md5sums              
 Package: r-bioc-deseq2
 Version: 1.22.1+dfsg-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 1660
 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
 Recommends: r-cran-testthat
 Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/DESeq2/
 Description: R package for RNA-Seq Differential Expression Analysis
  Differential gene expression analysis based on the negative binomial
  distribution. Estimate variance-mean dependence in count data from
  high-throughput sequencing assays and test for differential expression based
  on a model using the negative binomial distribution.

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| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 6816
Build-Time: 126
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1648
Job: r-bioc-deseq2_1.22.1+dfsg-1
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 1790
Source-Version: 1.22.1+dfsg-1
Space: 6816
Status: successful
Version: 1.22.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-11-17T07:43:14Z
Build needed 00:29:50, 6816k disk space

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