r-bioc-deseq2 →
1.20.0-2 →
armhf → 2018-05-11 05:10:03
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-deseq2 1.20.0-2 (armhf) Fri, 11 May 2018 04:58:11 +0000 |
+==============================================================================+
Package: r-bioc-deseq2
Version: 1.20.0-2
Source Version: 1.20.0-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-e0f81fd6-d29d-4886-a4b2-d361e2dc8e94' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.5 MB]
Fetched 23.2 MB in 13s (1785 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2068 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.20.0-2 (dsc) [2421 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.20.0-2 (tar) [2059 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.20.0-2 (diff) [6060 B]
Fetched 2068 kB in 0s (4153 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-M54SKd/r-bioc-deseq2-1.20.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-M54SKd' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-SWj4aQ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-SWj4aQ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (10.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 26 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), r-cran-foreign, r-cran-nnet, r-cran-rcpparmadillo
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), r-cran-foreign, r-cran-nnet, r-cran-rcpparmadillo
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Sources [626 B]
Get:5 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ Packages [709 B]
Fetched 2668 B in 0s (12.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
gfortran gfortran-7 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libc-ares2
libcairo2 libcroco3 libcurl3 libdatrie1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran-7-dev libgfortran4
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhttp-parser2.8
libice6 libicu-dev libicu57 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses-dev libncurses5-dev libncurses6 libncursesw6 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
libssh2-1 libssl1.0.2 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo6 libtk8.6 libtool libuv1 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js nodejs pkg-config po-debconf r-base-core r-base-dev
r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster
r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-dbi
r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-foreign
r-cran-formatr r-cran-formula r-cran-futile.logger r-cran-futile.options
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr
r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets
r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mime r-cran-munsell r-cran-nnet r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-rsqlite r-cran-rstudioapi
r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-survival
r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-viridis
r-cran-viridislite r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common
xauth xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc
fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc readline-doc
tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biostrings
r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-rsamtools r-bioc-affy
r-bioc-deseq2 r-cran-foreach r-cran-batchjobs r-cran-bbmisc
r-cran-doparallel r-cran-rmpi r-bioc-variantannotation
r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-class
r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz
r-bioc-annotationhub r-bioc-edger r-cran-testthat r-cran-fastmatch
r-cran-mockery r-cran-withr r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm
r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-curl r-cran-xts r-cran-zoo
r-cran-rmysql r-cran-dbplyr r-cran-hms r-cran-mgcv r-cran-rpostgresql
r-cran-testit r-cran-hexbin r-cran-mapproj r-cran-maps r-cran-maptools
r-cran-multcomp r-cran-nlme r-cran-quantreg r-cran-r.utils r-cran-forcats
r-cran-httr r-cran-sp r-cran-rgl r-cran-rmarkdown r-cran-tikzdevice
r-cran-tinytex r-cran-png r-cran-xml2 r-cran-getopt r-cran-lubridate
r-cran-abind r-cran-iterators r-cran-inline r-cran-dbitest r-cran-rsprng
r-cran-rlecuyer r-cran-mockr r-cran-lsmeans r-cran-spdep
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2
libpng-tools publicsuffix libltdl-dev nodejs-doc libmail-sendmail-perl
r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
gfortran gfortran-7 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libc-ares2
libcairo2 libcroco3 libcurl3 libdatrie1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran-7-dev libgfortran4
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhttp-parser2.8
libice6 libicu-dev libicu57 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses-dev libncurses5-dev libncurses6 libncursesw6 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
libssh2-1 libssl1.0.2 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo6 libtk8.6 libtool libuv1 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js nodejs pkg-config po-debconf r-base-core r-base-dev
r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster
r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-dbi
r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-foreign
r-cran-formatr r-cran-formula r-cran-futile.logger r-cran-futile.options
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr
r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets
r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mime r-cran-munsell r-cran-nnet r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-purrr r-cran-r6
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-rsqlite r-cran-rstudioapi
r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-survival
r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-viridis
r-cran-viridislite r-cran-xml r-cran-xtable r-cran-yaml
sbuild-build-depends-r-bioc-deseq2-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 227 newly installed, 0 to remove and 25 not upgraded.
Need to get 139 MB/169 MB of archives.
After this operation, 445 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SWj4aQ/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [996 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1 [87.3 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-2 [234 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-2 [106 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-2 [64.7 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-1 [12.0 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.2.1 [1013 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-2 [72.8 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-12 [191 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-4 [280 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-4 [325 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.31.1-1 [69.4 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.1-1 [51.4 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-4 [403 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 0.19.7-2 [44.1 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.11-1 [34.6 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.0-1 [158 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1 [799 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.0-1 [53.2 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.0-1 [43.3 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-5 [224 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.4-1 [23.0 MB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-12 [232 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-12 [5454 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:62 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libtinfo6 armhf 6.1+20180210-2 [307 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libncurses6 armhf 6.1+20180210-2 [78.3 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libncursesw6 armhf 6.1+20180210-2 [103 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-2 [278 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20180210-2 [920 B]
Get:69 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.4-1 [4488 B]
Get:79 http://172.17.0.1/private buster-staging/main armhf dh-r all 20180403 [12.3 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.3+dfsg-1 [2209 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libc-ares2 armhf 1.14.0-1 [80.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libhttp-parser2.8 armhf 2.8.1-1 [19.1 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.3.7+dfsg-2 [274 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.16+dfsg-1 [135 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.3+dfsg-1 [5656 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.3-1 [335 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.3-1 [12.5 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 8.11.1~dfsg-2 [4076 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.26.0-2 [582 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.40.0-2 [2025 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.16.0-1 [1163 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.12.0-2 [1467 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi armhf 0.8-1 [693 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-12-2 [214 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-2 [433 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-4 [152 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-1 [44.1 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-2 [26.6 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.1-1 [18.4 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.15-1 [111 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-1 [31.8 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.1-2 [17.0 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-1.1 [19.0 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 0.12.16-1 [3252 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.1.0-1 [704 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.42.0-3 [4305 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.11-1 [1668 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-2-2 [692 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-3 [22.5 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.10-1 [618 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate armhf 1.56.2+dfsg-1 [1950 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr armhf 1.5-2 [126 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.2-2 [87.6 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-1 [16.0 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-2 [93.8 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.2-1.1 [65.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.12.0-2 [765 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.53.1-1 [560 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.4.1-1 [615 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-35-1+b1 [723 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-14-1 [2320 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.42-3-1 [4319 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf r-bioc-genefilter armhf 1.60.0-1 [1578 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-1.1 [26.3 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf r-bioc-geneplotter all 1.58.0-2 [1495 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.1.0-2 [8213 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.14.0-1 [3529 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.18.0-1 [367 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.30.3-1 [1576 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.8.1-1 [1592 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2 [50.6 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.2-1 [44.3 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-1+b1 [23.6 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-bindr all 0.1.1-1 [15.5 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-bindrcpp armhf 0.2.2-1 [61.1 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.5-1 [507 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-52-1 [108 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-cran-crayon armhf 1.3.4-2 [713 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-cran-cli all 1.0.0-1 [293 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.7-1-1 [523 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-2 [397 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.11.0-1 [1268 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-cran-dichromat all 1:2.0-0-1 [146 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-cran-glue armhf 1.2.0-1 [57.9 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.2.0-1 [800 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.2.2-2 [239 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-cran-utf8 armhf 1.1.3-1 [106 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-cran-pillar all 1.2.2-1 [103 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.4.2-2 [161 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-cran-dplyr armhf 0.7.4-3 [1357 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.2.2-1 [571 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.3.0-1 [153 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.10.1-1 [52.3 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.70-1 [237 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-2-1.1 [163 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-2 [66.1 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-49-1 [1100 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-1+b1 [734 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.3-1 [94.3 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.4.3-2 [128 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-2 [40.6 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.3.0-1 [55.5 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 0.5.0-1 [190 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.1-2 [110 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 2.2.1-3 [2681 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-1.1 [999 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.6-2 [30.4 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-13-1 [885 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b1 [2059 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-1 [124 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.5.1-1 [1845 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.5-1+b1 [25.8 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.8-1 [99.9 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.1.18-1 [80.3 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr armhf 1.20-2 [695 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.5-2 [589 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets armhf 1.2-1 [366 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf r-cran-rstudioapi all 0.7-1 [106 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf r-cran-purrr armhf 0.2.4-1 [214 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyselect armhf 0.2.4-1 [111 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf r-cran-tidyr armhf 0.8.0-1 [365 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.11.2-1 [218 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.1-1-1 [1772 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2 [109 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpparmadillo armhf 0.8.500.0-1 [1070 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ...
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Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up xdg-utils (1.1.2-2) ...
Setting up libncurses6:armhf (6.1+20180210-2) ...
Setting up libc-ares2:armhf (1.14.0-1) ...
Setting up libx11-data (2:1.6.5-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up r-cran-cluster (2.0.7-1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.041-1) ...
Setting up libhttp-parser2.8:armhf (2.8.1-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up gfortran (4:7.2.0-1d1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up fontconfig-config (2.13.0-4) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up gettext (0.19.8.1-6) ...
Setting up nodejs (8.11.1~dfsg-2) ...
update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncursesw6:armhf (6.1+20180210-2) ...
Setting up libharfbuzz0b:armhf (1.7.6-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.27-2) ...
Setting up libicu-dev (57.1-9) ...
Setting up file (1:5.33-2) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libncurses-dev:armhf (6.1+20180210-2) ...
Setting up libxcb1:armhf (1.13-1) ...
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2.1) ...
Setting up libfontconfig1:armhf (2.13.0-4) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-render0:armhf (1.13-1) ...
Setting up node-highlight.js (9.12.0+dfsg1-4) ...
Setting up po-debconf (1.0.20) ...
Setting up libx11-6:armhf (2:1.6.5-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libncurses5-dev:armhf (6.1+20180210-2) ...
Setting up libreadline-dev:armhf (7.0-3) ...
Setting up libxcb-shm0:armhf (1.13-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up fontconfig (2.13.0-4) ...
Regenerating fonts cache... done.
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.0-1) ...
Setting up libcairo2:armhf (1.15.10-3) ...
Setting up libcurl3:armhf (7.58.0-2) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.0-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.0-1) ...
Setting up r-base-core (3.4.4-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-littler (0.3.3-1) ...
Setting up littler (0.3.3-1) ...
Setting up r-cran-nnet (7.3-12-2) ...
Setting up r-cran-crayon (1.3.4-2) ...
Setting up r-cran-rstudioapi (0.7-1) ...
Setting up r-cran-gtable (0.2.0-2) ...
Setting up r-base-dev (3.4.4-1) ...
Setting up r-cran-acepack (1.4.1-2) ...
Setting up r-bioc-biocgenerics (0.26.0-2) ...
Setting up r-cran-assertthat (0.2.0-1) ...
Setting up r-bioc-biobase (2.40.0-2) ...
Setting up r-cran-jsonlite (1.5-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-1.1) ...
Setting up r-cran-bitops (1.0-6-3) ...
Setting up r-cran-formatr (1.5-2) ...
Setting up r-cran-dbi (0.8-1) ...
Setting up r-cran-gridextra (2.3-1.1) ...
Setting up r-cran-stringi (1.2.2-1) ...
Setting up r-cran-pkgkitten (0.1.4-1.1) ...
Setting up r-cran-futile.options (1.0.1-1) ...
Setting up r-cran-rcpp (0.12.16-1) ...
Setting up r-cran-labeling (0.3-2) ...
Setting up r-cran-r6 (2.2.2-2) ...
Setting up r-cran-colorspace (1.3-2-2) ...
Setting up r-cran-utf8 (1.1.3-1) ...
Setting up r-cran-mass (7.3-49-1) ...
Setting up r-cran-plyr (1.8.4-1+b1) ...
Setting up r-cran-rcurl (1.95-4.10-1) ...
Setting up r-cran-mime (0.5-1+b1) ...
Setting up r-cran-yaml (2.1.18-1) ...
Setting up r-cran-rlang (0.2.0-1) ...
Setting up r-cran-digest (0.6.15-1) ...
Setting up r-cran-xtable (1:1.8-2-2) ...
Setting up r-cran-cli (1.0.0-1) ...
Setting up r-cran-bit (1.1-12-2) ...
Setting up r-cran-magrittr (1.5-4) ...
Setting up r-cran-data.table (1.11.0-1) ...
Setting up r-cran-dichromat (1:2.0-0-1) ...
Setting up r-cran-pkgconfig (2.0.1-2) ...
Setting up r-cran-lambda.r (1.2.2-2) ...
Setting up r-cran-matrixstats (0.53.1-1) ...
Setting up r-cran-snow (1:0.4.2-1.1) ...
Setting up r-cran-glue (1.2.0-1) ...
Setting up r-cran-memoise (1.1.0-1) ...
Setting up r-bioc-s4vectors (0.16.0-1) ...
Setting up r-cran-bit64 (0.9-7-2) ...
Setting up r-cran-xml (3.98-1.11-1) ...
Setting up r-cran-bindr (0.1.1-1) ...
Setting up r-cran-highr (0.6-2) ...
Setting up r-cran-viridislite (0.3.0-1) ...
Setting up r-cran-chron (2.3-52-1) ...
Setting up r-cran-bindrcpp (0.2.2-1) ...
Setting up r-cran-formula (1.2-2-1.1) ...
Setting up r-cran-lattice (0.20-35-1+b1) ...
Setting up r-cran-base64enc (0.1-3-1+b1) ...
Setting up r-cran-lazyeval (0.2.1-2) ...
Setting up r-cran-latticeextra (0.6-28-2+b1) ...
Setting up r-cran-backports (1.1.2-1) ...
Setting up r-bioc-genomeinfodbdata (1.1.0-2) ...
Setting up r-cran-stringr (1.3.0-1) ...
Setting up r-cran-prettyunits (1.0.2-2) ...
Setting up r-cran-htmltools (0.3.6-1) ...
Setting up r-cran-markdown (0.8-1) ...
Setting up r-cran-evaluate (0.10.1-1) ...
Setting up r-cran-rcpparmadillo (0.8.500.0-1) ...
Setting up r-cran-munsell (0.4.3-2) ...
Setting up r-cran-htmlwidgets (1.2-1) ...
Setting up r-cran-blob (1.1.1-1) ...
Setting up r-cran-pillar (1.2.2-1) ...
Setting up r-cran-futile.logger (1.4.3-2) ...
Setting up r-cran-reshape2 (1.4.3-1) ...
Setting up r-cran-rsqlite (2.1.0-1) ...
Setting up r-bioc-iranges (2.12.0-2) ...
Setting up r-cran-scales (0.5.0-1) ...
Setting up r-cran-tibble (1.4.2-2) ...
Setting up r-bioc-biocparallel (1.12.0-2) ...
Setting up r-cran-matrix (1.2-14-1) ...
Setting up r-bioc-delayedarray (0.4.1-1) ...
Setting up r-bioc-genomeinfodb (1.14.0-1) ...
Setting up r-cran-checkmate (1.8.5-1) ...
Setting up r-cran-knitr (1.20-2) ...
Setting up r-bioc-xvector (0.18.0-1) ...
Setting up r-cran-purrr (0.2.4-1) ...
Setting up r-cran-dplyr (0.7.4-3) ...
Setting up r-bioc-annotationdbi (1.42.0-3) ...
Setting up r-cran-ggplot2 (2.2.1-3) ...
Setting up r-cran-survival (2.42-3-1) ...
Setting up r-bioc-genomicranges (1.30.3-1) ...
Setting up r-cran-tidyselect (0.2.4-1) ...
Setting up r-bioc-annotate (1.56.2+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.8.1-1) ...
Setting up r-cran-tidyr (0.8.0-1) ...
Setting up r-cran-viridis (0.5.1-1) ...
Setting up r-bioc-genefilter (1.60.0-1) ...
Setting up r-cran-rpart (4.1-13-1) ...
Setting up r-bioc-geneplotter (1.58.0-2) ...
Setting up r-cran-htmltable (1.11.2-1) ...
Setting up r-cran-hmisc (4.1-1-1) ...
Setting up dh-autoreconf (17) ...
Setting up dh-strip-nondeterminism (0.041-1) ...
Setting up debhelper (11.2.1) ...
Setting up dh-r (20180403) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-119-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 linux-libc-dev_4.15.17-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 dctrl-tools_2.24-2 debconf_1.5.66 debhelper_11.2.1 debianutils_4.8.4 dh-autoreconf_17 dh-r_20180403 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 e2fsprogs-l10n_1.44.1-2 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-4 fontconfig-config_2.13.0-4 fonts-dejavu-core_2.37-1 fonts-mathjax_2.7.3+dfsg-1 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8-20180414-1+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gfortran_4:7.2.0-1d1 gfortran-7_7.3.0-12 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 icu-devtools_57.1-9 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8-20180414-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-15+rpi1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-ares2_1.14.0-1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcairo2_1.15.10-3 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180414-1+rpi1 libcilkrts5_7.3.0-12 libcom-err2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdatrie1_0.2.11-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfontconfig1_2.13.0-4 libfreetype6_2.8.1-2 libfribidi0_0.19.7-2 libgcc-7-dev_7.3.0-12 libgcc1_1:8-20180414-1+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 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libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-2 libncurses5_6.1-1 libncurses5-dev_6.1+20180210-2 libncurses6_6.1+20180210-2 libncursesw5_6.1-1 libncursesw6_6.1+20180210-2 libnettle6_3.4-1 libnghttp2-14_1.31.1-1 libnpth0_1.5-3 libnss-systemd_238-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpango-1.0-0_1.42.0-1 libpangocairo-1.0-0_1.42.0-1 libpangoft2-1.0-0_1.42.0-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-2 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-2 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.14-1 libpsl5_0.20.1-1 libreadline-dev_7.0-3 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 libsystemd0_238-4 libtasn1-6_4.13-2 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtinfo6_6.1+20180210-2 libtk8.6_8.6.8-4 libtool_2.4.6-2.1 libubsan0_7.3.0-12 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libuv1_1.18.0-3 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-6.1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 libzstd1_1.3.3+dfsg-2+rpi1 linux-base_4.5 linux-libc-dev_4.15.17-1+rpi1 littler_0.3.3-1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mount_2.31.1-0.5 multiarch-support_2.27-3+rpi1 nano_2.9.5-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 netbase_5.4 node-highlight.js_9.12.0+dfsg1-4 nodejs_8.11.1~dfsg-2 openssl_1.1.0h-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-2 perl-base_5.26.2-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.14-1 r-base-core_3.4.4-1 r-base-dev_3.4.4-1 r-bioc-annotate_1.56.2+dfsg-1 r-bioc-annotationdbi_1.42.0-3 r-bioc-biobase_2.40.0-2 r-bioc-biocgenerics_0.26.0-2 r-bioc-biocparallel_1.12.0-2 r-bioc-delayedarray_0.4.1-1 r-bioc-genefilter_1.60.0-1 r-bioc-geneplotter_1.58.0-2 r-bioc-genomeinfodb_1.14.0-1 r-bioc-genomeinfodbdata_1.1.0-2 r-bioc-genomicranges_1.30.3-1 r-bioc-iranges_2.12.0-2 r-bioc-s4vectors_0.16.0-1 r-bioc-summarizedexperiment_1.8.1-1 r-bioc-xvector_0.18.0-1 r-cran-acepack_1.4.1-2 r-cran-assertthat_0.2.0-1 r-cran-backports_1.1.2-1 r-cran-base64enc_0.1-3-1+b1 r-cran-bindr_0.1.1-1 r-cran-bindrcpp_0.2.2-1 r-cran-bit_1.1-12-2 r-cran-bit64_0.9-7-2 r-cran-bitops_1.0-6-3 r-cran-blob_1.1.1-1 r-cran-checkmate_1.8.5-1 r-cran-chron_2.3-52-1 r-cran-cli_1.0.0-1 r-cran-cluster_2.0.7-1-1 r-cran-colorspace_1.3-2-2 r-cran-crayon_1.3.4-2 r-cran-data.table_1.11.0-1 r-cran-dbi_0.8-1 r-cran-dichromat_1:2.0-0-1 r-cran-digest_0.6.15-1 r-cran-dplyr_0.7.4-3 r-cran-evaluate_0.10.1-1 r-cran-foreign_0.8.70-1 r-cran-formatr_1.5-2 r-cran-formula_1.2-2-1.1 r-cran-futile.logger_1.4.3-2 r-cran-futile.options_1.0.1-1 r-cran-ggplot2_2.2.1-3 r-cran-glue_1.2.0-1 r-cran-gridextra_2.3-1.1 r-cran-gtable_0.2.0-2 r-cran-highr_0.6-2 r-cran-hmisc_4.1-1-1 r-cran-htmltable_1.11.2-1 r-cran-htmltools_0.3.6-1 r-cran-htmlwidgets_1.2-1 r-cran-jsonlite_1.5-2 r-cran-knitr_1.20-2 r-cran-labeling_0.3-2 r-cran-lambda.r_1.2.2-2 r-cran-lattice_0.20-35-1+b1 r-cran-latticeextra_0.6-28-2+b1 r-cran-lazyeval_0.2.1-2 r-cran-littler_0.3.3-1 r-cran-magrittr_1.5-4 r-cran-markdown_0.8-1 r-cran-mass_7.3-49-1 r-cran-matrix_1.2-14-1 r-cran-matrixstats_0.53.1-1 r-cran-memoise_1.1.0-1 r-cran-mime_0.5-1+b1 r-cran-munsell_0.4.3-2 r-cran-nnet_7.3-12-2 r-cran-pillar_1.2.2-1 r-cran-pkgconfig_2.0.1-2 r-cran-pkgkitten_0.1.4-1.1 r-cran-plyr_1.8.4-1+b1 r-cran-prettyunits_1.0.2-2 r-cran-purrr_0.2.4-1 r-cran-r6_2.2.2-2 r-cran-rcolorbrewer_1.1-2-1.1 r-cran-rcpp_0.12.16-1 r-cran-rcpparmadillo_0.8.500.0-1 r-cran-rcurl_1.95-4.10-1 r-cran-reshape2_1.4.3-1 r-cran-rlang_0.2.0-1 r-cran-rpart_4.1-13-1 r-cran-rsqlite_2.1.0-1 r-cran-rstudioapi_0.7-1 r-cran-scales_0.5.0-1 r-cran-snow_1:0.4.2-1.1 r-cran-stringi_1.2.2-1 r-cran-stringr_1.3.0-1 r-cran-survival_2.42-3-1 r-cran-tibble_1.4.2-2 r-cran-tidyr_0.8.0-1 r-cran-tidyselect_0.2.4-1 r-cran-utf8_1.1.3-1 r-cran-viridis_0.5.1-1 r-cran-viridislite_0.3.0-1 r-cran-xml_3.98-1.11-1 r-cran-xtable_1:1.8-2-2 r-cran-yaml_2.1.18-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018d-1 ucf_3.0038 udev_238-4 unzip_6.0-21 util-linux_2.31.1-0.5 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.2-2 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun May 6 05:18:37 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.20.0-2.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-deseq2_1.20.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-deseq2_1.20.0-2.debian.tar.xz
dpkg-source: info: applying remove-locfit
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-e0f81fd6-d29d-4886-a4b2-d361e2dc8e94
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.20.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-deseq2-1.20.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: DESeq2 Version: 1.20.0
I: Building using R version 3.4.4-1
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Sun, 06 May 2018 07:02:08 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 06 May 2018 07:02:08 +0200'"
* installing *source* package 'DESeq2' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DESeq2.cpp -o DESeq2.o
g++ -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs
** R
** inst
** preparing package for lazy loading
Warning: multiple methods tables found for 'pos'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'GenomeInfoDb'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'GenomicRanges'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'XVector'
Warning: multiple methods tables found for 'pos'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'DelayedArray'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'SummarizedExperiment'
Warning: replacing previous import 'BiocGenerics::pos' by 'GenomicRanges::pos' when loading 'DESeq2'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'AnnotationDbi'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: multiple methods tables found for 'pos'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'GenomeInfoDb'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'GenomicRanges'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'XVector'
Warning: multiple methods tables found for 'pos'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'DelayedArray'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'SummarizedExperiment'
Warning: replacing previous import 'BiocGenerics::pos' by 'GenomicRanges::pos' when loading 'DESeq2'
Warning: replacing previous import 'BiocGenerics::pos' by 'IRanges::pos' when loading 'AnnotationDbi'
* DONE (DESeq2)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
W: Cannot find a debian package for Suggests:tximport
W: Cannot find a debian package for Suggests:tximportData
I: Using r-cran-readr for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs/DESeq2.so was not linked against libgfortran.so.4 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.20.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.20.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-deseq2_1.20.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-deseq2-1.20.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-05-11T05:09:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-deseq2_1.20.0-2_armhf.changes:
-------------------------------------
Format: 1.8
Date: Sun, 06 May 2018 07:02:08 +0200
Source: r-bioc-deseq2
Binary: r-bioc-deseq2
Architecture: armhf
Version: 1.20.0-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
r-bioc-deseq2 (1.20.0-2) unstable; urgency=medium
.
* Fix Maintainer and Vcs-fields
* Add comment about really needed Build-Depends not respected by
dh-update-R
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Files:
2b5c0d89f399cbd71b2149b9883c75b0 680544 debug optional r-bioc-deseq2-dbgsym_1.20.0-2_armhf.deb
1b7431d9bd644bbcd2b72a2973694450 10828 gnu-r optional r-bioc-deseq2_1.20.0-2_armhf.buildinfo
3c0b702fac462756516b1ba70809c014 2225084 gnu-r optional r-bioc-deseq2_1.20.0-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-deseq2-dbgsym_1.20.0-2_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 680544 bytes: control archive=540 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-deseq2-dbgsym
Source: r-bioc-deseq2
Version: 1.20.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 707
Depends: r-bioc-deseq2 (= 1.20.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-deseq2
Build-Ids: c89d867be594b688db6b07a469dbf7f722ee12dc
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r-bioc-deseq2_1.20.0-2_armhf.deb
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new Debian package, version 2.0.
size 2225084 bytes: control archive=3068 bytes.
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6625 bytes, 77 lines md5sums
Package: r-bioc-deseq2
Version: 1.20.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3715
Depends: r-base-core (>= 3.4.4-1), r-api-3.4, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran4 (>= 7), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DESeq2/
Description: R package for RNA-Seq Differential Expression Analysis
Differential gene expression analysis based on the negative binomial
distribution. Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential expression based
on a model using the negative binomial distribution.
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Build Architecture: armhf
Build-Space: 11800
Build-Time: 104
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 584
Job: r-bioc-deseq2_1.20.0-2
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 708
Source-Version: 1.20.0-2
Space: 11800
Status: successful
Version: 1.20.0-2
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Finished at 2018-05-11T05:09:59Z
Build needed 00:11:48, 11800k disk space