Raspbian Package Auto-Building

Build log for r-bioc-deseq2 (1.18.0-1) on armhf

r-bioc-deseq2 → 1.18.0-1 → armhf → 2017-11-15 05:38:02 

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| r-bioc-deseq2 1.18.0-1 (armhf)               Wed, 15 Nov 2017 05:26:13 +0000 |
+==============================================================================+

Package: r-bioc-deseq2
Version: 1.18.0-1
Source Version: 1.18.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-825d79cb-c0cf-402c-94e2-23c243dd5362' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.5 MB in 8s (2596 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-deseq2' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/r-bioc-deseq2.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/r-bioc-deseq2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2148 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.18.0-1 (dsc) [2314 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.18.0-1 (tar) [2140 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-deseq2 1.18.0-1 (diff) [5780 B]
Fetched 2148 kB in 0s (3256 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-QEyp7y/r-bioc-deseq2-1.18.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-deseq2-QEyp7y' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gTxOqs/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gTxOqs/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gTxOqs/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (7804 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15098 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-genefilter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpparmadillo, r-cran-foreign, r-cran-nnet, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-geneplotter, r-cran-knitr
Filtered Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-genefilter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpparmadillo, r-cran-foreign, r-cran-nnet, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-geneplotter, r-cran-knitr
dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in '/<<BUILDDIR>>/resolver-gTxOqs/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-deseq2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Sources [598 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ Packages [674 B]
Fetched 2605 B in 0s (8994 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-deseq2 build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  e2fsprogs-l10n libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
  debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
  gfortran gfortran-7 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2
  libcroco3 libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
  libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
  libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap
  libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
  libssh2-1 libssl1.0.2 libtcl8.6 libthai-data libthai0 libtiff5
  libtimedate-perl libtinfo-dev libtk8.6 libtool libuv1 libx11-6 libx11-data
  libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
  node-highlight.js nodejs pkg-config po-debconf r-base-core r-base-dev
  r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
  r-bioc-iranges r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
  r-cran-acepack r-cran-backports r-cran-base64enc r-cran-bit r-cran-bit64
  r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron r-cran-cluster
  r-cran-colorspace r-cran-data.table r-cran-dbi r-cran-dichromat
  r-cran-digest r-cran-evaluate r-cran-foreign r-cran-formula
  r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-nnet
  r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi
  r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis
  r-cran-viridislite r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common
  xauth xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
  libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc
  fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc
  readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc less www-browser
  libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-generic-recommended
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biostrings
  r-bioc-go.db r-cran-runit r-bioc-graph r-cran-foreach r-cran-batchjobs
  r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-variantannotation
  r-bioc-rsamtools r-bioc-genomicalignments r-bioc-shortread r-cran-codetools
  r-cran-class r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer
  r-bioc-gviz r-bioc-annotationhub r-bioc-deseq2 r-bioc-edger r-cran-testthat
  r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny
  r-cran-shinyjs r-cran-reshape r-cran-hexbin r-cran-fastmatch r-cran-nlme
  r-cran-xts r-cran-gdata r-cran-caret r-cran-curl r-cran-zoo r-cran-rmysql
  r-cran-mapproj r-cran-maps r-cran-maptools r-cran-mgcv r-cran-multcomp
  r-cran-quantreg r-cran-testit r-cran-httr r-cran-sp r-cran-formatr
  r-cran-rgl r-cran-tikzdevice r-cran-png r-cran-getopt r-cran-abind
  r-cran-iterators r-cran-inline r-cran-dbitest r-cran-hms r-cran-rsprng
  r-cran-rlecuyer r-cran-dplyr r-cran-withr r-cran-lsmeans r-cran-spdep
Recommended packages:
  curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs javascript-common krb5-locales libpng-tools
  publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
  debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
  gfortran gfortran-7 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2
  libcroco3 libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
  libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
  libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap
  libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14
  libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
  libssh2-1 libssl1.0.2 libtcl8.6 libthai-data libthai0 libtiff5
  libtimedate-perl libtinfo-dev libtk8.6 libtool libuv1 libx11-6 libx11-data
  libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
  node-highlight.js nodejs pkg-config po-debconf r-base-core r-base-dev
  r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-delayedarray r-bioc-genefilter r-bioc-geneplotter
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
  r-bioc-iranges r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
  r-cran-acepack r-cran-backports r-cran-base64enc r-cran-bit r-cran-bit64
  r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron r-cran-cluster
  r-cran-colorspace r-cran-data.table r-cran-dbi r-cran-dichromat
  r-cran-digest r-cran-evaluate r-cran-foreign r-cran-formula
  r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra
  r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-jsonlite r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-nnet
  r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi
  r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis
  r-cran-viridislite r-cran-xml r-cran-xtable r-cran-yaml
  sbuild-build-depends-r-bioc-deseq2-dummy ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
0 upgraded, 207 newly installed, 0 to remove and 27 not upgraded.
Need to get 169 MB of archives.
After this operation, 434 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gTxOqs/apt_archive ./ sbuild-build-depends-r-bioc-deseq2-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-3 [95.9 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-2 [73.6 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-0.1 [401 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.3-0.2 [435 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2m-3 [887 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.10.5 [978 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-1 [72.7 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-12 [191 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.8-2 [557 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.27.0-1 [71.0 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-4 [42.4 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.56.1-1 [276 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-1 [168 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-1 [50.0 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.12-1 [179 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-6 [71.5 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.6.2-1 [683 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.12-1 [72.0 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.12-1 [61.2 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.7+dfsg-1 [869 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-6 [219 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-1+b2 [49.3 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.7-1 [660 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.2-2 [22.9 MB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.2.0-12 [231 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.2.0-12 [5443 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:93 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.0+20170902-1 [66.6 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.0+20170902-1 [151 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2 [178 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-4 [235 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-4 [227 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-4 [149 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-4 [565 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 57.1-8 [156 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 57.1-8 [15.8 MB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.2-2 [4488 B]
Get:114 http://172.17.0.1/private buster-staging/main armhf dh-r all 20161219 [8794 B]
Get:115 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.0-2 [960 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.3.7+dfsg-2 [274 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.2.1-1 [154 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.16+dfsg-1 [135 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.11.0-2 [78.9 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.2-1 [60.3 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.2-1 [12.0 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 4.8.4~dfsg-1 [2905 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.24.0-1 [567 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.38.0-1 [2024 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.16.0-1 [1163 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.12.0-1 [1466 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi armhf 0.7-1 [664 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-12-1 [214 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-1 [433 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.1.2-1 [435 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-1.1 [19.0 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 0.12.13-1 [3261 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.3.4-1 [167 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.0-2 [15.3 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.12-1+b1 [109 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-1 [31.8 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.1-2 [17.0 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.0-2 [700 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.40.0-1 [4303 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.9-1 [1667 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-2-2 [692 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.8-3 [616 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotate armhf 1.56.0+dfsg-1 [1946 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2-1 [86.3 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.0-3 [15.6 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-2 [93.8 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.2-1.1 [65.4 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.12.0-1 [765 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.52.2-1 [552 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.4.1-1 [615 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-35-1+b1 [723 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-11-1 [2330 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.41-3-2 [5142 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf r-bioc-genefilter armhf 1.58.1-2 [1579 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-1.1 [26.3 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf r-bioc-geneplotter all 1.56.0-1 [1495 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 0.99.0-2 [16.2 MB]
Get:161 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.14.0-1 [3529 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.18.0-1 [367 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.30.0-1 [1575 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.8.0-1 [1581 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2 [50.6 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.1-1 [41.4 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-1+b1 [23.6 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.4-1 [503 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-51-1 [107 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.6-2 [513 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-1+b1 [397 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.0-2 [5603 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.10.4-2-1 [1113 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf r-cran-dichromat all 2.0.0-3 [146 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.1.5-1 [566 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-4 [152 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.2.0-1 [132 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.10.1-1 [52.3 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.69-1 [236 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-2-1.1 [163 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-2 [66.1 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-47-1 [1098 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-1+b1 [734 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.2-1+b1 [92.2 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.4.3-2 [128 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-2 [40.6 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.2.2-2 [239 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.2.0-1.1 [56.1 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 0.5.0-1 [190 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.0-1+b1 [111 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 2.2.1-3 [2681 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-1.1 [999 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.6-2 [30.4 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-11-1 [882 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b1 [2059 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-1 [124 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.4.0-1.1 [1719 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.5-1+b1 [25.8 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.8-1 [99.9 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.1.14-1+b1 [68.4 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr armhf 1.17-1 [806 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.5-1 [589 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets armhf 0.9-1 [383 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.9-1.1 [199 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.0-3-1 [1748 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2 [109 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpparmadillo armhf 0.8.100.1.0-1 [1050 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libpipeline1:armhf (1.4.2-1) ...
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Unpacking man-db (2.7.6.1-2) ...
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Preparing to unpack .../005-libexpat1_2.2.3-2_armhf.deb ...
Unpacking libexpat1:armhf (2.2.3-2) ...
Selecting previously unselected package libfreetype6:armhf.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2) ...
Setting up libfontconfig1:armhf (2.12.3-0.2) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libk5crypto3:armhf (1.15.2-2) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up node-highlight.js (9.12.0+dfsg1-4) ...
Setting up po-debconf (1.0.20) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.15.2-2) ...
Setting up libxft2:armhf (2.3.2-1+b2) ...
Setting up fontconfig (2.12.3-0.2) ...
Regenerating fonts cache... done.
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.15.2-2) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:armhf (1.40.12-1) ...
Setting up libcairo2:armhf (1.15.8-2) ...
Setting up libcurl3:armhf (7.56.1-1) ...
Setting up libtk8.6:armhf (8.6.7-1) ...
Setting up libpangoft2-1.0-0:armhf (1.40.12-1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.12-1) ...
Setting up r-base-core (3.4.2-2) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-littler (0.3.2-1) ...
Setting up littler (0.3.2-1) ...
Setting up r-cran-nnet (7.3-12-2) ...
Setting up r-cran-gtable (0.2.0-2) ...
Setting up r-base-dev (3.4.2-2) ...
Setting up r-cran-acepack (1.4.1-2) ...
Setting up r-bioc-biocgenerics (0.24.0-1) ...
Setting up r-bioc-biobase (2.38.0-1) ...
Setting up r-cran-jsonlite (1.5-1) ...
Setting up r-cran-rcolorbrewer (1.1-2-1.1) ...
Setting up r-cran-bitops (1.0-6-1) ...
Setting up r-cran-dbi (0.7-1) ...
Setting up r-cran-gridextra (2.3-1.1) ...
Setting up r-cran-stringi (1.1.5-1) ...
Setting up r-cran-pkgkitten (0.1.4-1.1) ...
Setting up r-cran-futile.options (1.0.0-3) ...
Setting up r-cran-rcpp (0.12.13-1) ...
Setting up r-cran-labeling (0.3-2) ...
Setting up r-cran-r6 (2.2.2-2) ...
Setting up r-cran-colorspace (1.3-2-1+b1) ...
Setting up r-cran-mass (7.3-47-1) ...
Setting up r-cran-plyr (1.8.4-1+b1) ...
Setting up r-cran-rcurl (1.95-4.8-3) ...
Setting up r-cran-mime (0.5-1+b1) ...
Setting up r-cran-yaml (2.1.14-1+b1) ...
Setting up r-cran-rlang (0.1.2-1) ...
Setting up r-cran-digest (0.6.12-1+b1) ...
Setting up r-cran-xtable (1:1.8-2-2) ...
Setting up r-cran-bit (1.1-12-1) ...
Setting up r-cran-magrittr (1.5-4) ...
Setting up r-cran-cluster (2.0.6-2) ...
Setting up r-cran-data.table (1.10.4-2-1) ...
Setting up r-cran-dichromat (2.0.0-3) ...
Setting up r-cran-pkgconfig (2.0.1-2) ...
Setting up r-cran-lambda.r (1.2-1) ...
Setting up r-cran-matrixstats (0.52.2-1) ...
Setting up r-cran-snow (1:0.4.2-1.1) ...
Setting up r-cran-memoise (1.1.0-1) ...
Setting up r-bioc-s4vectors (0.16.0-1) ...
Setting up r-cran-bit64 (0.9-7-1) ...
Setting up r-cran-tibble (1.3.4-1) ...
Setting up r-cran-xml (3.98-1.9-1) ...
Setting up r-cran-highr (0.6-2) ...
Setting up r-cran-viridislite (0.2.0-1.1) ...
Setting up r-cran-chron (2.3-51-1) ...
Setting up r-cran-formula (1.2-2-1.1) ...
Setting up r-cran-lattice (0.20-35-1+b1) ...
Setting up r-cran-base64enc (0.1-3-1+b1) ...
Setting up r-cran-lazyeval (0.2.0-1+b1) ...
Setting up r-cran-latticeextra (0.6-28-2+b1) ...
Setting up r-cran-backports (1.1.1-1) ...
Setting up r-bioc-genomeinfodbdata (0.99.0-2) ...
Setting up r-cran-foreign (0.8.69-1) ...
Setting up r-cran-stringr (1.2.0-1) ...
Setting up r-cran-htmltools (0.3.6-1) ...
Setting up r-cran-markdown (0.8-1) ...
Setting up r-cran-evaluate (0.10.1-1) ...
Setting up r-cran-rcpparmadillo (0.8.100.1.0-1) ...
Setting up r-cran-munsell (0.4.3-2) ...
Setting up r-cran-htmlwidgets (0.9-1) ...
Setting up r-cran-blob (1.1.0-2) ...
Setting up r-cran-futile.logger (1.4.3-2) ...
Setting up r-cran-reshape2 (1.4.2-1+b1) ...
Setting up r-cran-rsqlite (2.0-2) ...
Setting up r-bioc-iranges (2.12.0-1) ...
Setting up r-cran-scales (0.5.0-1) ...
Setting up r-bioc-biocparallel (1.12.0-1) ...
Setting up r-cran-matrix (1.2-11-1) ...
Setting up r-bioc-delayedarray (0.4.1-1) ...
Setting up r-bioc-genomeinfodb (1.14.0-1) ...
Setting up r-cran-checkmate (1.8.4-1) ...
Setting up r-cran-knitr (1.17-1) ...
Setting up r-bioc-xvector (0.18.0-1) ...
Setting up r-bioc-annotationdbi (1.40.0-1) ...
Setting up r-cran-ggplot2 (2.2.1-3) ...
Setting up r-cran-survival (2.41-3-2) ...
Setting up r-bioc-genomicranges (1.30.0-1) ...
Setting up r-cran-htmltable (1.9-1.1) ...
Setting up r-bioc-annotate (1.56.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.8.0-1) ...
Setting up r-cran-viridis (0.4.0-1.1) ...
Setting up r-bioc-genefilter (1.58.1-2) ...
Setting up r-cran-rpart (4.1-11-1) ...
Setting up r-bioc-geneplotter (1.56.0-1) ...
Setting up r-cran-hmisc (4.0-3-1) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (10.10.5) ...
Setting up dh-r (20161219) ...
Setting up sbuild-build-depends-r-bioc-deseq2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-17) ...
Processing triggers for systemd (235-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-6+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-12 gcc-7_7.2.0-12 libc6-dev_2.24-17 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-6+rpi1 binutils-arm-linux-gnueabihf_2.29.1-6+rpi1 binutils-common_2.29.1-6+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-12 dash_0.5.8-2.5 dctrl-tools_2.24-2 debconf_1.5.64 debhelper_10.10.5 debianutils_4.8.2 dh-autoreconf_14 dh-r_20161219 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.1-5 dmsetup_2:1.02.142-1 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-1 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.3-0.2 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 fonts-mathjax_2.7.0-2 g++_4:7.2.0-1d1 g++-7_7.2.0-12 gcc_4:7.2.0-1d1 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perl-base_5.26.1-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 pkg-config_0.29-4 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 r-base-core_3.4.2-2 r-base-dev_3.4.2-2 r-bioc-annotate_1.56.0+dfsg-1 r-bioc-annotationdbi_1.40.0-1 r-bioc-biobase_2.38.0-1 r-bioc-biocgenerics_0.24.0-1 r-bioc-biocparallel_1.12.0-1 r-bioc-delayedarray_0.4.1-1 r-bioc-genefilter_1.58.1-2 r-bioc-geneplotter_1.56.0-1 r-bioc-genomeinfodb_1.14.0-1 r-bioc-genomeinfodbdata_0.99.0-2 r-bioc-genomicranges_1.30.0-1 r-bioc-iranges_2.12.0-1 r-bioc-s4vectors_0.16.0-1 r-bioc-summarizedexperiment_1.8.0-1 r-bioc-xvector_0.18.0-1 r-cran-acepack_1.4.1-2 r-cran-backports_1.1.1-1 r-cran-base64enc_0.1-3-1+b1 r-cran-bit_1.1-12-1 r-cran-bit64_0.9-7-1 r-cran-bitops_1.0-6-1 r-cran-blob_1.1.0-2 r-cran-checkmate_1.8.4-1 r-cran-chron_2.3-51-1 r-cran-cluster_2.0.6-2 r-cran-colorspace_1.3-2-1+b1 r-cran-data.table_1.10.4-2-1 r-cran-dbi_0.7-1 r-cran-dichromat_2.0.0-3 r-cran-digest_0.6.12-1+b1 r-cran-evaluate_0.10.1-1 r-cran-foreign_0.8.69-1 r-cran-formula_1.2-2-1.1 r-cran-futile.logger_1.4.3-2 r-cran-futile.options_1.0.0-3 r-cran-ggplot2_2.2.1-3 r-cran-gridextra_2.3-1.1 r-cran-gtable_0.2.0-2 r-cran-highr_0.6-2 r-cran-hmisc_4.0-3-1 r-cran-htmltable_1.9-1.1 r-cran-htmltools_0.3.6-1 r-cran-htmlwidgets_0.9-1 r-cran-jsonlite_1.5-1 r-cran-knitr_1.17-1 r-cran-labeling_0.3-2 r-cran-lambda.r_1.2-1 r-cran-lattice_0.20-35-1+b1 r-cran-latticeextra_0.6-28-2+b1 r-cran-lazyeval_0.2.0-1+b1 r-cran-littler_0.3.2-1 r-cran-magrittr_1.5-4 r-cran-markdown_0.8-1 r-cran-mass_7.3-47-1 r-cran-matrix_1.2-11-1 r-cran-matrixstats_0.52.2-1 r-cran-memoise_1.1.0-1 r-cran-mime_0.5-1+b1 r-cran-munsell_0.4.3-2 r-cran-nnet_7.3-12-2 r-cran-pkgconfig_2.0.1-2 r-cran-pkgkitten_0.1.4-1.1 r-cran-plyr_1.8.4-1+b1 r-cran-r6_2.2.2-2 r-cran-rcolorbrewer_1.1-2-1.1 r-cran-rcpp_0.12.13-1 r-cran-rcpparmadillo_0.8.100.1.0-1 r-cran-rcurl_1.95-4.8-3 r-cran-reshape2_1.4.2-1+b1 r-cran-rlang_0.1.2-1 r-cran-rpart_4.1-11-1 r-cran-rsqlite_2.0-2 r-cran-scales_0.5.0-1 r-cran-snow_1:0.4.2-1.1 r-cran-stringi_1.1.5-1 r-cran-stringr_1.2.0-1 r-cran-survival_2.41-3-2 r-cran-tibble_1.3.4-1 r-cran-viridis_0.4.0-1.1 r-cran-viridislite_0.2.0-1.1 r-cran-xml_3.98-1.9-1 r-cran-xtable_1:1.8-2-2 r-cran-yaml_2.1.14-1+b1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-deseq2-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 ucf_3.0036 udev_235-2 unzip_6.0-21 util-linux_2.30.2-0.1 x11-common_1:7.7+19 xauth_1:1.0.9-1 xdg-utils_1.1.2-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 10 08:28:00 2017 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-deseq2_1.18.0-1.dsc
dpkg-source: info: extracting r-bioc-deseq2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-deseq2_1.18.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-deseq2_1.18.0-1.debian.tar.xz
dpkg-source: info: applying remove-locfit

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-825d79cb-c0cf-402c-94e2-23c243dd5362
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-deseq2
dpkg-buildpackage: info: source version 1.18.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build r-bioc-deseq2-1.18.0
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_testdir -O--buildsystem=R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build-arch
dh build-arch --buildsystem R
   dh_testdir -a -O--buildsystem=R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_installdirs -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R Package: DESeq2 Version: 1.18.0
I: Building using R version 3.4.2-2
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Fri, 10 Nov 2017 09:00:02 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 10 Nov 2017 09:00:02 +0100'"
* installing *source* package 'DESeq2' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++  -I/usr/share/R/include -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-bsBMFt/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c DESeq2.cpp -o DESeq2.o
In file included from /usr/lib/R/site-library/RcppArmadillo/include/armadillo:53:0,
                 from /usr/lib/R/site-library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /usr/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from DESeq2.cpp:16:
/usr/lib/R/site-library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:474:96: note: #pragma message: WARNING: use of OpenMP disabled; this compiler doesn't support OpenMP 3.0+
   #pragma message ("WARNING: use of OpenMP disabled; this compiler doesn't support OpenMP 3.0+")
                                                                                                ^
g++  -I/usr/share/R/include -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppArmadillo/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-bsBMFt/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o
In file included from /usr/lib/R/site-library/RcppArmadillo/include/armadillo:53:0,
                 from /usr/lib/R/site-library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /usr/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from RcppExports.cpp:4:
/usr/lib/R/site-library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:474:96: note: #pragma message: WARNING: use of OpenMP disabled; this compiler doesn't support OpenMP 3.0+
   #pragma message ("WARNING: use of OpenMP disabled; this compiler doesn't support OpenMP 3.0+")
                                                                                                ^
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o DESeq2.so DESeq2.o RcppExports.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Depends:IRanges
I: Using r-bioc-genomicranges for Depends:GenomicRanges
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.1.6)
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-knitr for Suggests:knitr
W: Cannot find a debian package for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:vsn
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-cran-rcolorbrewer for Suggests:RColorBrewer
W: Cannot find a debian package for Suggests:IHW
W: Cannot find a debian package for Suggests:apeglm
W: Cannot find a debian package for Suggests:ashr
W: Cannot find a debian package for Suggests:tximport
W: Cannot find a debian package for Suggests:tximportData
W: Cannot find a debian package for Suggests:readr
I: Using r-cran-pbapply for Suggests:pbapply
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.10)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.7.5)
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-genefilter for Imports:genefilter
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-cran-ggplot2 for Imports:ggplot2
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0)
   dh_install -a -O--buildsystem=R
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installexamples -a -O--buildsystem=R
   dh_installman -a -O--buildsystem=R
   dh_installcatalogs -a -O--buildsystem=R
   dh_installcron -a -O--buildsystem=R
   dh_installdebconf -a -O--buildsystem=R
   dh_installemacsen -a -O--buildsystem=R
   dh_installifupdown -a -O--buildsystem=R
   dh_installinfo -a -O--buildsystem=R
   dh_systemd_enable -a -O--buildsystem=R
   dh_installinit -a -O--buildsystem=R
   dh_systemd_start -a -O--buildsystem=R
   dh_installmenu -a -O--buildsystem=R
   dh_installmime -a -O--buildsystem=R
   dh_installmodules -a -O--buildsystem=R
   dh_installlogcheck -a -O--buildsystem=R
   dh_installlogrotate -a -O--buildsystem=R
   dh_installpam -a -O--buildsystem=R
   dh_installppp -a -O--buildsystem=R
   dh_installudev -a -O--buildsystem=R
   dh_installgsettings -a -O--buildsystem=R
   dh_bugfiles -a -O--buildsystem=R
   dh_ucf -a -O--buildsystem=R
   dh_lintian -a -O--buildsystem=R
   dh_gconf -a -O--buildsystem=R
   dh_icons -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_usrlocal -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_installwm -a -O--buildsystem=R
   dh_installxfonts -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-deseq2/usr/lib/R/site-library/DESeq2/libs/DESeq2.so was not linked against libgfortran.so.4 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-deseq2-dbgsym' in '../r-bioc-deseq2-dbgsym_1.18.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-deseq2' in '../r-bioc-deseq2_1.18.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-deseq2_1.18.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-bioc-deseq2-1.18.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-11-15T05:37:59Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-deseq2_1.18.0-1_armhf.changes:
-------------------------------------

Format: 1.8
Date: Fri, 10 Nov 2017 09:00:02 +0100
Source: r-bioc-deseq2
Binary: r-bioc-deseq2
Architecture: armhf
Version: 1.18.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis
Changes:
 r-bioc-deseq2 (1.18.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Secure URI in watch file
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 82d5c1216c43879551b52bb46d96ecbdd1c7d777 2302336 r-bioc-deseq2_1.18.0-1_armhf.deb
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Files:
 1dfb573d1e16f76b0abad9e67775b633 666260 debug optional r-bioc-deseq2-dbgsym_1.18.0-1_armhf.deb
 8d75e2b23d1ad32a0480f17de4a17234 10075 gnu-r optional r-bioc-deseq2_1.18.0-1_armhf.buildinfo
 7f6b50495de565c42abf33896f0a7faf 2302336 gnu-r optional r-bioc-deseq2_1.18.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-deseq2-dbgsym_1.18.0-1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 666260 bytes: control archive=540 bytes.
     396 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-deseq2-dbgsym
 Source: r-bioc-deseq2
 Version: 1.18.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 693
 Depends: r-bioc-deseq2 (= 1.18.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-deseq2
 Build-Ids: 2faeba604e5d9b121ef88673c3de8ae4f9fb412e

drwxr-xr-x root/root         0 2017-11-10 08:00 ./
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/debug/.build-id/2f/
-rw-r--r-- root/root    698464 2017-11-10 08:00 ./usr/lib/debug/.build-id/2f/aeba604e5d9b121ef88673c3de8ae4f9fb412e.debug
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/share/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-11-10 08:00 ./usr/share/doc/r-bioc-deseq2-dbgsym -> r-bioc-deseq2


r-bioc-deseq2_1.18.0-1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 2302336 bytes: control archive=3120 bytes.
    1133 bytes,    15 lines      control              
    6868 bytes,    80 lines      md5sums              
 Package: r-bioc-deseq2
 Version: 1.18.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3845
 Depends: r-base-core (>= 3.4.2-2), r-api-3.4, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran4 (>= 7), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
 Suggests: r-cran-testthat, r-cran-knitr, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-pbapply
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/DESeq2/
 Description: R package for RNA-Seq Differential Expression Analysis
  Differential gene expression analysis based on the negative binomial
  distribution. Estimate variance-mean dependence in count data from
  high-throughput sequencing assays and test for differential expression based
  on a model using the negative binomial distribution.

drwxr-xr-x root/root         0 2017-11-10 08:00 ./
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/R/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/
-rw-r--r-- root/root       701 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/CITATION
-rw-r--r-- root/root      1249 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/DESCRIPTION
-rw-r--r-- root/root      3480 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/INDEX
drwxr-xr-x root/root         0 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/
-rw-r--r-- root/root      2042 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/Rd.rds
-rw-r--r-- root/root       112 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/features.rds
-rw-r--r-- root/root      1948 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/hsearch.rds
-rw-r--r-- root/root      1035 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/links.rds
-rw-r--r-- root/root      1149 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/nsInfo.rds
-rw-r--r-- root/root      1406 2017-11-10 08:00 ./usr/lib/R/site-library/DESeq2/Meta/package.rds
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Build Architecture: armhf
Build-Space: 12104
Build-Time: 136
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 551
Job: r-bioc-deseq2_1.18.0-1
Machine Architecture: armhf
Package: r-bioc-deseq2
Package-Time: 706
Source-Version: 1.18.0-1
Space: 12104
Status: successful
Version: 1.18.0-1
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Finished at 2017-11-15T05:37:59Z
Build needed 00:11:46, 12104k disk space