r-bioc-delayedarray →
0.8.0+dfsg-1 →
armhf → 2018-11-26 05:54:29
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-delayedarray 0.8.0+dfsg-1 (armhf) Mon, 26 Nov 2018 05:35:17 +0000 |
+==============================================================================+
Package: r-bioc-delayedarray
Version: 0.8.0+dfsg-1
Source Version: 0.8.0+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-e7d1aa77-1aa6-4913-891a-b3a635e68751' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-delayedarray' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-delayedarray.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-delayedarray.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 286 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-delayedarray 0.8.0+dfsg-1 (dsc) [2357 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-delayedarray 0.8.0+dfsg-1 (tar) [279 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-delayedarray 0.8.0+dfsg-1 (diff) [3900 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-p73sfo/r-bioc-delayedarray-0.8.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-p73sfo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-TPzUXc/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
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gpg: /<<BUILDDIR>>/resolver-TPzUXc/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TPzUXc/apt_archive ./ InRelease
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
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debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 15786 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, libgdal-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.25.1), r-bioc-s4vectors (>= 0.17.43), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, libgdal-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.25.1), r-bioc-s4vectors (>= 0.17.43), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel
dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<<BUILDDIR>>/resolver-TPzUXc/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-delayedarray-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TPzUXc/apt_archive ./ InRelease
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-delayedarray build dependencies (apt-based resolver)
-------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core gcc-7-base gdal-data
gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev
libblas-dev libblas3 libboost-dev libboost1.67-dev libbsd0 libbz2-dev
libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1-dev
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
libgdal-dev libgdal20 libgeos-3.7.0 libgeos-c1v5 libgeos-dev libgeotiff-dev
libgeotiff2 libgfortran-8-dev libgfortran4 libgfortran5 libgif-dev libgif7
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b
libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63
libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjson-c-dev libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1
libkmlengine1 libkmlregionator1 libkmlxsd1 liblapack-dev liblapack3
liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1
libmariadbclient-dev libmariadbclient-dev-compat libmariadbclient18
libminizip-dev libminizip1 libmpdec2 libncurses-dev libncurses5-dev
libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2
libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpoppler-dev libpoppler-private-dev libpoppler80 libpopt0 libpq-dev libpq5
libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-dev
libssh2-1 libsuperlu-dev libsuperlu5 libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool
liburiparser-dev liburiparser1 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db
mime-support mysql-common odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-matrixstats r-cran-snow ucf unixodbc-dev unzip uuid-dev x11-common
xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff
libitpp-dev liblapack-doc libboost-doc libboost1.67-doc
libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev
libboost-context1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
libgraphite2-utils libhdf4-doc hdf4-tools libhdf5-doc icu-doc liblcms2-utils
libtool-doc liblzma-doc ncurses-doc netcdf-bin netcdf-doc libmyodbc
odbc-postgresql tdsodbc unixodbc-bin ogdi-bin libfreetype6-dev
postgresql-doc-11 proj-bin readline-doc sqlite3-doc libsuperlu-doc tcl8.6
tk8.6 gcj-jdk libxerces-c-doc m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv
python3.6-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-genomicfeatures
r-bioc-summarizedexperiment r-cran-matrix r-bioc-delayedarray r-bioc-graph
r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc
r-cran-ggplot2 r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin
shared-mime-info xdg-user-dirs libpng-tools poppler-data publicsuffix
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi
r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools
r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core gcc-7-base gdal-data
gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev
libblas-dev libblas3 libboost-dev libboost1.67-dev libbsd0 libbz2-dev
libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1-dev
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0
libgdal-dev libgdal20 libgeos-3.7.0 libgeos-c1v5 libgeos-dev libgeotiff-dev
libgeotiff2 libgfortran-8-dev libgfortran4 libgfortran5 libgif-dev libgif7
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b
libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu63 libiculx63
libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjson-c-dev libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1
libkmlengine1 libkmlregionator1 libkmlxsd1 liblapack-dev liblapack3
liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1
libmariadbclient-dev libmariadbclient-dev-compat libmariadbclient18
libminizip-dev libminizip1 libmpdec2 libncurses-dev libncurses5-dev
libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2
libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpoppler-dev libpoppler-private-dev libpoppler80 libpopt0 libpq-dev libpq5
libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-dev
libssh2-1 libsuperlu-dev libsuperlu5 libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool
liburiparser-dev liburiparser1 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db
mime-support mysql-common odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-matrixstats r-cran-snow
sbuild-build-depends-r-bioc-delayedarray-dummy ucf unixodbc-dev unzip
uuid-dev x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 248 newly installed, 0 to remove and 19 not upgraded.
Need to get 139 MB/145 MB of archives.
After this operation, 587 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TPzUXc/apt_archive ./ sbuild-build-depends-r-bioc-delayedarray-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-4 [7974 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.37-1 [683 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.37-1 [1533 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.37-1 [28.2 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:47 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-4 [166 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.1.1-1+rpi1 [1013 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-4 [61.9 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-4 [51.5 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-2 [236 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-2 [23.6 MB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:86 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:90 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git180724-3 [12.9 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libiculx63 armhf 63.1-4 [26.3 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-4 [166 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 2.1.1-1+rpi1 [742 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 2.1.1-1+rpi1 [749 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.1.1-1+rpi1 [757 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 2.1.1-1+rpi1 [1099 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git180724-3 [28.5 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-4 [8865 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-2 [4484 B]
Get:118 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.2+dfsg-2 [733 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.6.3-1+rpi1 [81.2 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libarmadillo9 armhf 1:9.100.6+dfsg-1 [86.3 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.6.3-1+rpi1 [89.3 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:9.100.6+dfsg-1 [357 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-10 [8387 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.67.0.1 [3860 B]
Get:134 http://172.17.0.1/private buster-staging/main armhf libcharls1 armhf 1.1.0+dfsg-3 [44.4 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-3 [21.8 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.61.0-1 [281 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.61.0-1 [353 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libdap25 armhf 3.20.0-1 [468 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libdapserver7v5 armhf 3.20.0-1 [126 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libdapclient6v5 armhf 3.20.0-1 [183 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7+b1 [640 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32.1-0.1 [91.9 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.20.0-1 [768 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.4 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [46.0 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-3 [31.8 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-3 [30.3 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-6 [97.8 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-6 [161 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libgeos-3.7.0 armhf 3.7.0-1 [630 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libgeos-c1v5 armhf 3.7.0-1 [284 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.2.0-1 [6986 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.2.0-1 [185 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-4 [66.2 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-4 [234 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.9.0-1 [38.6 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-7 [42.1 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-7 [144 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-7 [67.4 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-7 [44.4 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-7 [22.2 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-7 [28.7 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-3 [344 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-6 [387 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-4 [194 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.20-1 [89.6 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.39-1 [937 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libpoppler80 armhf 0.69.0-2 [1322 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 11.1-1+b1 [146 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.2+debian-1+b1 [707 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.2+dfsg-2+b2 [4847 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.7.0-1 [306 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.10-2 [107 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.10-2 [347 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-4 [93.4 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-3 [80.6 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-4 [310 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.9.0-1 [20.9 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-7 [939 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-6 [159 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.2.0-1 [228 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-4 [38.2 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.69.0-2 [23.0 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.69.0-2 [190 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 11.1-1+b1 [146 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.25.3-1 [677 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.2+debian-1+b1 [1466 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.5+dfsg-1+rpi1 [226 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.2+dfsg-2+b2 [6274 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr all 1.5-3 [149 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.16.0-1 [1056 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1+b1 [1799 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.12-1 [2130 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
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Setting up libminizip1:armhf (1.1-8) ...
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Setting up dh-r (20181101) ...
Setting up libxerces-c-dev (3.2.2+debian-1+b1) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up libdap-dev:armhf (3.20.0-1) ...
Setting up libgdal20 (2.3.2+dfsg-2+b2) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up libgdal-dev (2.3.2+dfsg-2+b2) ...
Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-8+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.10-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 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libpq-dev_11.1-1+b1 libpq5_11.1-1+b1 libprocps7_2:3.3.15-2 libproj-dev_5.2.0-1 libproj13_5.2.0-1 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libqhull-dev_2015.2-4 libqhull-r7_2015.2-4 libqhull7_2015.2-4 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libspatialite-dev_4.3.0a-5+b2 libspatialite7_4.3.0a-5+b2 libsqlite3-0_3.25.3-1 libsqlite3-dev_3.25.3-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libsuperlu-dev_5.2.1+dfsg1-3 libsuperlu5_5.2.1+dfsg1-3 libswitch-perl_2.17-2 libsystemd0_239-11+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff-dev_4.0.10-2 libtiff5_4.0.10-2 libtiffxx5_4.0.10-2 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-11+rpi1 libunistring2_0.9.10-1 liburiparser-dev_0.9.0-1 liburiparser1_0.9.0-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.2+debian-1+b1 libxerces-c3.2_3.2.2+debian-1+b1 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b1 libxml2-dev_2.9.4+dfsg1-7+b1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd-dev_1.3.5+dfsg-1+rpi1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.10-2+rpi1+b1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-8+rpi1 mysql-common_5.8+1.0.4 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 odbcinst_2.3.6-0.1 odbcinst1debian2_2.3.6-0.1 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 proj-data_5.2.0-1 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-2 r-base-dev_3.5.1-2 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.0-1 r-bioc-iranges_2.14.12-1 r-bioc-s4vectors_0.18.3-1+b1 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.3-2 r-cran-matrixstats_0.54.0-1 r-cran-snow_1:0.4.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-11+rpi1 systemd-sysv_239-11+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-11+rpi1 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.32.1-0.1 uuid-dev_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 8 22:16:55 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.8.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-delayedarray in /<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg
dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-e7d1aa77-1aa6-4913-891a-b3a635e68751
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-delayedarray
dpkg-buildpackage: info: source version 0.8.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit, biocgenerics, genefilter
I: R Package: DelayedArray Version: 0.8.0
I: Building using R version 3.5.1-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Thu, 08 Nov 2018 23:10:03 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 08 Nov 2018 23:10:03 +0100'"
* installing *source* package 'DelayedArray' ...
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/DelayedArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error : package 'S4Vectors' 0.18.3 was found, but >= 0.19.15 is required by 'DelayedArray'
ERROR: lazy loading failed for package 'DelayedArray'
* removing '/<<BUILDDIR>>/r-bioc-delayedarray-0.8.0+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/DelayedArray'
dh_auto_install: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 08 Nov 2018 23:10:03 +0100'" returned exit code 1
make: *** [debian/rules:4: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-11-26T05:54:25Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1148
Build-Time: 7
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1123
Job: r-bioc-delayedarray_0.8.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-delayedarray
Package-Time: 1148
Source-Version: 0.8.0+dfsg-1
Space: 1148
Status: attempted
Version: 0.8.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-11-26T05:54:25Z
Build needed 00:19:08, 1148k disk space