r-bioc-delayedarray →
0.12.0+dfsg-1 →
armhf → 2019-11-17 17:18:13
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-delayedarray 0.12.0+dfsg-1 (armhf) Sun, 17 Nov 2019 17:09:19 +0000 |
+==============================================================================+
Package: r-bioc-delayedarray
Version: 0.12.0+dfsg-1
Source Version: 0.12.0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-04b532b4-2a90-49da-a09c-591cb63bd27b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 10s (2336 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-delayedarray' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-delayedarray.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-delayedarray.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 296 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-delayedarray 0.12.0+dfsg-1 (dsc) [2369 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-delayedarray 0.12.0+dfsg-1 (tar) [290 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-delayedarray 0.12.0+dfsg-1 (diff) [3988 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-cEEpBQ/r-bioc-delayedarray-0.12.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-cEEpBQ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-q64OjH/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-q64OjH/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-q64OjH/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8193 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12227 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix
dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<<BUILDDIR>>/resolver-q64OjH/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-delayedarray-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Sources [579 B]
Get:5 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ Packages [661 B]
Fetched 2573 B in 0s (9931 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-delayedarray build dependencies (apt-based resolver)
-------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl
libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5 libtk8.6
libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges
r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff
liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-foreach r-cran-bbmisc r-bioc-variantannotation
r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr
r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment
r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc
r-cran-ggplot2 r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-rsamtools
r-cran-batchtools r-cran-rmpi r-bioc-xvector r-bioc-genomicranges
r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl
libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5 libtk8.6
libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges
r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow
sbuild-build-depends-r-bioc-delayedarray-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 144 newly installed, 0 to remove and 2 not upgraded.
Need to get 94.1 MB of archives.
After this operation, 259 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-q64OjH/apt_archive ./ sbuild-build-depends-r-bioc-delayedarray-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-2 [136 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-3 [1137 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-8 [107 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
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Get:53 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
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Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
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Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1+b1 [297 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-17+rpi1 [231 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-8 [1568 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1.1 [62.8 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0-1 [249 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.1-7 [24.3 MB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-17+rpi1 [279 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-17+rpi1 [7451 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3+rpi1 [1432 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.8.0-8 [112 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-8 [2839 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20191019-1 [284 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20191019-1 [940 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-3 [114 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.1-7 [4488 B]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20190917 [36.2 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formatr all 1.7-1 [152 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lambda.r all 1.2.4-1 [119 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocparallel armhf 1.20.0-1 [1070 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.24.0-1 [1944 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.20.0-1 [2217 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-17-2 [3458 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.55.0-1 [576 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Unpacking libswitch-perl (2.17-2) ...
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Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package libsigsegv2:armhf.
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Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.18-4) ...
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Unpacking automake (1:1.16.1-4) ...
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Unpacking autopoint (0.19.8.1-9) ...
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.9-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up r-base-core (3.6.1-7) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-futile.options (1.0.1-2) ...
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-formatr (1.7-1) ...
Setting up r-bioc-biocgenerics (0.32.0-1) ...
Setting up r-cran-matrixstats (0.55.0-1) ...
Setting up r-base-dev (3.6.1-7) ...
Setting up r-cran-lambda.r (1.2.4-1) ...
Setting up r-cran-snow (1:0.4.3-1) ...
Setting up r-bioc-s4vectors (0.24.0-1) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up r-cran-matrix (1.2-17-2) ...
Setting up r-bioc-iranges (2.20.0-1) ...
Setting up r-bioc-biocparallel (1.20.0-1) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-r (20190917) ...
Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-17+rpi1 gcc-9_9.2.1-17+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2+rpi1 binutils-arm-linux-gnueabihf_2.33.1-2+rpi1 binutils-common_2.33.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-17+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-r_20190917 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-17+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-9_9.2.1-17+rpi1 gcc-9-base_9.2.1-17+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:9.2.1-3+rpi1 gfortran-9_9.2.1-17+rpi1 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-17+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-17+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2+rpi1 libblas-dev_3.8.0-8 libblas3_3.8.0-8 libblkid1_2.34-0.1 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-17+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcurl4_7.66.0-1+b1 libdatrie1_0.2.12-3+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.1-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libfribidi0_1.0.7-1.1 libgcc-9-dev_9.2.1-17+rpi1 libgcc1_1:9.2.1-17+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-17+rpi1 libgfortran5_9.2.1-17+rpi1 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-17+rpi1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6+b1 libharfbuzz0b_2.6.4-1+rpi1 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 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libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libpsl5_0.20.2-2 libreadline-dev_8.0-3 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-3 libtcl8.6_8.6.9+dfsg-2 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0-1 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtk8.6_8.6.9-2 libtool_2.4.6-11 libubsan1_9.2.1-17+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+b2 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1+b3 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.6 openssl_1.1.1d-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.0-1 r-bioc-iranges_2.20.0-1 r-bioc-s4vectors_0.24.0-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-matrix_1.2-17-2 r-cran-matrixstats_0.55.0-1 r-cran-snow_1:0.4.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.34-0.1 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 9 21:46:36 2019 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.12.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-delayedarray in /<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg
dpkg-source: info: unpacking r-bioc-delayedarray_0.12.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-delayedarray_0.12.0+dfsg-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-04b532b4-2a90-49da-a09c-591cb63bd27b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-delayedarray
dpkg-buildpackage: info: source version 0.12.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit, biocgenerics, genefilter
I: R Package: DelayedArray Version: 0.12.0
I: Building using R version 3.6.1-7
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sat, 09 Nov 2019 22:39:39 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-delayedarray-0.12.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-delayedarray-0.12.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 09 Nov 2019 22:39:39 +0100'"
* installing *source* package 'DelayedArray' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jEdEmw/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compress_atomic_vector.c -o compress_atomic_vector.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o compress_atomic_vector.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-delayedarray-0.12.0+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/00LOCK-r-bioc-delayedarray-0.12.0+dfsg/00new/DelayedArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'aperm' in package 'DelayedArray'
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a new generic function for 'rowsum' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedArray)
W: Ignoring specified R dependency: R (>= 3.4)
I: Using r-cran-matrixstats for Depends:matrixStats
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.31.5)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.21.7)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.17.3)
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-cran-runit for Recommends:runit
I: Using r-bioc-biocgenerics for Recommends:biocgenerics
I: Using r-bioc-genefilter for Recommends:genefilter
W: Cannot find a debian package for Suggests:HDF5Array
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment
W: Cannot find a debian package for Suggests:airway
W: Cannot find a debian package for Suggests:pryr
W: Cannot find a debian package for Suggests:DelayedMatrixStats
I: Using r-cran-knitr for Suggests:knitr
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-matrix for Imports:Matrix
I: BioConductor API version: r-api-bioc-3.10
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
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dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.12.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in '../r-bioc-delayedarray-dbgsym_0.12.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
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Build finished at 2019-11-17T17:18:07Z
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r-bioc-delayedarray_0.12.0+dfsg-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Sat, 09 Nov 2019 22:39:39 +0100
Source: r-bioc-delayedarray
Binary: r-bioc-delayedarray r-bioc-delayedarray-dbgsym
Architecture: armhf
Version: 0.12.0+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-delayedarray - BioConductor delayed operations on array-like objects
Changes:
r-bioc-delayedarray (0.12.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Fixed debian/watch for BioConductor
* debhelper-compat 12
* Standards-Version: 4.4.1
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r-bioc-delayedarray-dbgsym_0.12.0+dfsg-1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 27784 bytes: control archive=548 bytes.
423 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-delayedarray-dbgsym
Source: r-bioc-delayedarray
Version: 0.12.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 49
Depends: r-bioc-delayedarray (= 0.12.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-delayedarray
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r-bioc-delayedarray_0.12.0+dfsg-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 1666080 bytes: control archive=2096 bytes.
1149 bytes, 20 lines control
3797 bytes, 41 lines md5sums
Package: r-bioc-delayedarray
Version: 0.12.0+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2651
Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix, libc6 (>= 2.4)
Recommends: r-cran-runit, r-bioc-genefilter
Suggests: r-bioc-summarizedexperiment, r-cran-knitr
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/DelayedArray/
Description: BioConductor delayed operations on array-like objects
Wrapping an array-like object (typically an on-disk object) in
a DelayedArray object allows one to perform common array operations
on it without loading the object in memory. In order to reduce memory
usage and optimize performance, operations on the object are either
delayed or executed using a block processing mechanism. Note that this
also works on in-memory array-like objects like DataFrame objects
(typically with Rle columns), Matrix objects, and ordinary arrays and
data frames.
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Build Architecture: armhf
Build-Space: 5456
Build-Time: 112
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 398
Job: r-bioc-delayedarray_0.12.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-delayedarray
Package-Time: 528
Source-Version: 0.12.0+dfsg-1
Space: 5456
Status: successful
Version: 0.12.0+dfsg-1
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Finished at 2019-11-17T17:18:07Z
Build needed 00:08:48, 5456k disk space