r-bioc-dada2 →
1.16.0+dfsg-1 →
armhf → 2020-08-15 11:20:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-dada2 1.16.0+dfsg-1 (armhf) Sat, 15 Aug 2020 10:52:18 +0000 |
+==============================================================================+
Package: r-bioc-dada2
Version: 1.16.0+dfsg-1
Source Version: 1.16.0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-0d0a5426-a5cc-4eaf-a9e0-78208b320cfa' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-dada2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-dada2.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-dada2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1325 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-dada2 1.16.0+dfsg-1 (dsc) [2303 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-dada2 1.16.0+dfsg-1 (tar) [1319 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-dada2 1.16.0+dfsg-1 (diff) [3264 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-dada2-yzHxqJ/r-bioc-dada2-1.16.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dada2-yzHxqJ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-of292Z/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-of292Z/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-of292Z/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release.gpg
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Get:5 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2840 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-of292Z/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 852 B of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12502 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel, r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0)
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel, r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-dada2-dummy' in '/<<BUILDDIR>>/resolver-of292Z/apt_archive/sbuild-build-depends-r-bioc-dada2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-dada2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Sources [615 B]
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Fetched 2648 B in 1s (3576 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-of292Z/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-of292Z/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-dada2 build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu67
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl
libswitch-perl libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5
libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools
r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector
r-bioc-zlibbioc r-cran-assertthat r-cran-backports r-cran-bh r-cran-bitops
r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc
r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg
r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr
r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps
r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi
r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat
r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
libboost-context1.71-dev libboost-contract1.71-dev
libboost-coroutine1.71-dev libboost-date-time1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
libboost-program-options1.71-dev libboost-python1.71-dev
libboost-random1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc
liblzma-doc ncurses-doc readline-doc libtbb-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess
r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-bioc-all r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-cran-codetools
r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub
r-bioc-graph r-bioc-biomart r-cran-rmarkdown r-cran-jsonlite r-bioc-rhdf5
r-cran-covr r-cran-htmlwidgets r-cran-prettycode r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
r-cran-dplyr r-cran-viridis r-cran-unitizer r-cran-hmisc r-cran-maps
r-cran-maptools r-cran-multcomp r-cran-rpart r-cran-sf r-cran-svglite
r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-magick
r-cran-getopt r-cran-base64enc r-cran-doparallel r-cran-iterators
r-cran-itertools r-cran-curl r-cran-inline r-cran-xml r-cran-mockr
r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-devtools
r-cran-usethis r-cran-bit64 r-cran-blob r-cran-hms r-cran-htmltools
r-cran-purrr r-cran-tidyr r-cran-zeallot
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools
r-cran-rmpi r-bioc-genefilter r-bioc-annotate r-cran-cliapp r-cran-mockery
r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj
r-cran-hexbin r-cran-vdiffr r-cran-quantreg r-cran-lubridate r-cran-domc
r-cran-abind r-cran-curl r-cran-rmarkdown r-cran-bit64 r-cran-hms
r-cran-htmltools r-cran-htmlwidgets r-cran-xml2 r-cran-data.table
r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-mockr r-cran-generics
r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu67
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl
libswitch-perl libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5
libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools
r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector
r-bioc-zlibbioc r-cran-assertthat r-cran-backports r-cran-bh r-cran-bitops
r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc
r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg
r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr
r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps
r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi
r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat
r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr
sbuild-build-depends-r-bioc-dada2-dummy ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
0 upgraded, 217 newly installed, 0 to remove and 1 not upgraded.
Need to get 183 MB/185 MB of archives.
After this operation, 530 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-7 [258 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.10-3 [311 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.10-3 [704 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-2 [61.2 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1+b1 [286 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-6+rpi1 [232 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1+b1 [1309 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b3 [36.4 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.44.7-4 [165 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.44.7-4 [52.6 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.44.7-4 [44.9 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.2-1 [24.7 MB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.1.0-6+rpi1 [278 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.1.0-6+rpi1 [6595 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.1.0-1+rpi1 [1436 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2-1 [284 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2-1 [932 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-4 [116 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-3 [170 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-3 [9213 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.2-1 [4484 B]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20200710 [39.3 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b3 [4620 B]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libtbb2 armhf 2020.2-2 [117 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libtbb-dev armhf 2020.2-2 [312 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.11-1 [310 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.11-1 [15.1 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.34.0-1 [639 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biobase armhf 2.48.0-1 [2232 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formatr all 1.7-2 [151 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf r-cran-snow all 1:0.4.3-2 [109 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocparallel armhf 1.22.0-2 [1117 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.26.1-1 [2007 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.22.2-1 [2280 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-zlibbioc all 1.34.0+dfsg-1 [8788 B]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-xvector armhf 0.28.0-1 [616 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf r-cran-crayon all 1.3.4-5 [750 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biostrings armhf 2.56.0-1 [14.2 MB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.56.0-1+b1 [582 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1+b1 [3451 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-delayedarray armhf 0.14.1+dfsg-1 [1746 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bitops armhf 1.0-6-4+b1 [23.8 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcurl armhf 1.98-1.2-1+b1 [788 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodbdata all 1.2.3-1 [10.4 MB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomeinfodb all 1.24.2-1 [3903 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomicranges armhf 1.40.0+dfsg-1 [1873 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-summarizedexperiment all 1.18.2+dfsg-1 [1968 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-rhtslib armhf 1.20.0+dfsg-1 [965 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-rsamtools armhf 2.4.0-1 [3697 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genomicalignments armhf 1.24.0-1 [2223 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf r-cran-hwriter all 1.3.2-4 [162 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf r-cran-png armhf 0.1-7-3+b1 [40.1 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf r-cran-jpeg armhf 0.1-8.1-1+b1 [29.5 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf r-cran-latticeextra all 0.6-29-3 [2192 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-shortread armhf 1.46.0-1 [5070 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf r-cran-backports armhf 1.1.8-1 [74.5 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ps armhf 1.3.3-1+b1 [215 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf r-cran-r6 all 2.4.1-2 [79.2 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf r-cran-processx armhf 3.4.3-1 [291 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf r-cran-callr all 3.4.3-2 [388 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf r-cran-glue armhf 1.4.1-1 [138 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf r-cran-fansi armhf 0.4.1-1+b1 [337 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf r-cran-cli all 2.0.2-2 [392 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf r-cran-colorspace armhf 1.4-1+dfsg-1+b1 [1636 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rprojroot all 1.3-2-3 [97.5 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf r-cran-desc all 1.2.0-3 [301 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf r-cran-digest armhf 0.6.25-1+b1 [177 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rlang armhf 0.4.6-1+b1 [1117 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ellipsis armhf 0.3.1-1 [31.5 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf r-cran-evaluate all 0.14-2 [81.1 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf r-cran-farver armhf 2.0.3-1+b1 [1381 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf r-cran-magrittr all 1.5-6 [154 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf r-cran-withr all 2.2.0-2 [209 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgbuild all 1.0.8-2 [140 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rstudioapi all 0.11-2 [249 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgload armhf 1.1.0-1 [170 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf r-cran-praise all 1.0.0-4 [20.1 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf r-cran-testthat armhf 2.3.2-2 [1038 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf r-cran-isoband armhf 0.2.2-1 [2437 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mass armhf 7.3-51.6-1+b1 [1114 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nlme armhf 3.1.148-1 [2230 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mgcv armhf 1.8-31-1+b1 [2731 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf r-cran-labeling all 0.3-4 [62.2 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lifecycle all 0.2.0-2 [93.2 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf r-cran-viridislite all 0.3.0-4 [59.2 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b2 [127 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf r-cran-vctrs armhf 0.3.0-2 [957 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pillar all 1.4.4-2 [230 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tibble armhf 3.0.1-1+b1 [425 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ggplot2 all 3.3.2+dfsg-2 [3146 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.1.5-2 [23.7 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.5-1 [2009 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plyr armhf 1.8.6-2 [830 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcppparallel armhf 5.0.2+dfsg-1 [114 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringi armhf 1.4.6-1+b2 [687 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
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Setting up r-cran-rcolorbrewer (1.1-2-3) ...
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Setting up r-cran-mgcv (1.8-31-1+b1) ...
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Setting up r-cran-rcurl (1.98-1.2-1+b1) ...
Setting up r-bioc-delayedarray (0.14.1+dfsg-1) ...
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Setting up r-cran-desc (1.2.0-3) ...
Setting up r-cran-munsell (0.5.0-2) ...
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Setting up r-cran-ggplot2 (3.3.2+dfsg-2) ...
Setting up r-bioc-genomicalignments (1.24.0-1) ...
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Processing triggers for libc-bin (2.31-3+rpi1) ...
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Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-r_20200710 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gettext_0.19.8.1-10 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libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libpsl5_0.21.0-1.1 libreadline-dev_8.0-4 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtbb-dev_2020.2-2 libtbb2_2020.2-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtinfo6_6.2-1 libtk8.6_8.6.10-1 libtool_2.4.6-14 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.36-2 libwebp6_0.6.1-2 libx11-6_2:1.6.10-3 libx11-data_2:1.6.10-3 libxapian30_1.4.15-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-5+b1 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1+b3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 littler_0.3.11-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 r-base-core_4.0.2-1 r-base-dev_4.0.2-1 r-bioc-biobase_2.48.0-1 r-bioc-biocgenerics_0.34.0-1 r-bioc-biocparallel_1.22.0-2 r-bioc-biostrings_2.56.0-1 r-bioc-delayedarray_0.14.1+dfsg-1 r-bioc-genomeinfodb_1.24.2-1 r-bioc-genomeinfodbdata_1.2.3-1 r-bioc-genomicalignments_1.24.0-1 r-bioc-genomicranges_1.40.0+dfsg-1 r-bioc-iranges_2.22.2-1 r-bioc-rhtslib_1.20.0+dfsg-1 r-bioc-rsamtools_2.4.0-1 r-bioc-s4vectors_0.26.1-1 r-bioc-shortread_1.46.0-1 r-bioc-summarizedexperiment_1.18.2+dfsg-1 r-bioc-xvector_0.28.0-1 r-bioc-zlibbioc_1.34.0+dfsg-1 r-cran-assertthat_0.2.1-2 r-cran-backports_1.1.8-1 r-cran-bh_1.66.0-1 r-cran-bitops_1.0-6-4+b1 r-cran-callr_3.4.3-2 r-cran-cli_2.0.2-2 r-cran-colorspace_1.4-1+dfsg-1+b1 r-cran-crayon_1.3.4-5 r-cran-desc_1.2.0-3 r-cran-digest_0.6.25-1+b1 r-cran-ellipsis_0.3.1-1 r-cran-evaluate_0.14-2 r-cran-fansi_0.4.1-1+b1 r-cran-farver_2.0.3-1+b1 r-cran-formatr_1.7-2 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-ggplot2_3.3.2+dfsg-2 r-cran-glue_1.4.1-1 r-cran-gtable_0.3.0+dfsg-2 r-cran-hwriter_1.3.2-4 r-cran-isoband_0.2.2-1 r-cran-jpeg_0.1-8.1-1+b1 r-cran-labeling_0.3-4 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-41-1+b1 r-cran-latticeextra_0.6-29-3 r-cran-lifecycle_0.2.0-2 r-cran-littler_0.3.11-1 r-cran-magrittr_1.5-6 r-cran-mass_7.3-51.6-1+b1 r-cran-matrix_1.2-18-1+b1 r-cran-matrixstats_0.56.0-1+b1 r-cran-mgcv_1.8-31-1+b1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.148-1 r-cran-pillar_1.4.4-2 r-cran-pkgbuild_1.0.8-2 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.1.5-2 r-cran-pkgload_1.1.0-1 r-cran-plyr_1.8.6-2 r-cran-png_0.1-7-3+b1 r-cran-praise_1.0.0-4 r-cran-prettyunits_1.1.1-2 r-cran-processx_3.4.3-1 r-cran-ps_1.3.3-1+b1 r-cran-r6_2.4.1-2 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.5-1 r-cran-rcppparallel_5.0.2+dfsg-1 r-cran-rcurl_1.98-1.2-1+b1 r-cran-reshape2_1.4.4-2 r-cran-rlang_0.4.6-1+b1 r-cran-rprojroot_1.3-2-3 r-cran-rstudioapi_0.11-2 r-cran-scales_1.1.1-1 r-cran-snow_1:0.4.3-2 r-cran-stringi_1.4.6-1+b2 r-cran-stringr_1.4.0-2 r-cran-testthat_2.3.2-2 r-cran-tibble_3.0.1-1+b1 r-cran-utf8_1.1.4-1+b2 r-cran-vctrs_0.3.0-2 r-cran-viridislite_0.3.0-4 r-cran-withr_2.2.0-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-dada2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 unzip_6.0-25 util-linux_2.36-2 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.OQy7pFCt/trustedkeys.kbx': General error
gpgv: Signature made Wed May 20 15:18:50 2020 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dada2_1.16.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-dada2 in /<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg
dpkg-source: info: unpacking r-bioc-dada2_1.16.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-dada2_1.16.0+dfsg-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-0d0a5426-a5cc-4eaf-a9e0-78208b320cfa
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-dada2
dpkg-buildpackage: info: source version 1.16.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: dada2 Version: 1.16.0
I: Building using R version 4.0.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 20 May 2020 16:57:02 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-dada2-1.16.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-dada2-1.16.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 20 May 2020 16:57:02 +0200'"
* installing *source* package 'dada2' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppParallel/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nKXijO/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppParallel/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nKXijO/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmain.cpp -o Rmain.o
Rmain.cpp:7:10: fatal error: cpuid.h: No such file or directory
7 | #include <cpuid.h>
| ^~~~~~~~~
compilation terminated.
make[1]: *** [/usr/lib/R/etc/Makeconf:176: Rmain.o] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg/src'
ERROR: compilation failed for package 'dada2'
* removing '/<<BUILDDIR>>/r-bioc-dada2-1.16.0+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library/dada2'
dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-dada2-1.16.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 20 May 2020 16:57:02 +0200'" returned exit code 1
make: *** [debian/rules:4: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-08-15T11:20:29Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 94
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1539
Job: r-bioc-dada2_1.16.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-dada2
Package-Time: 1691
Source-Version: 1.16.0+dfsg-1
Space: 0
Status: failed
Version: 1.16.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-08-15T11:20:29Z
Build needed 00:00:00, 0k disc space