r-bioc-cner →
1.34.0+dfsg-1+b16 →
armhf → 2023-10-21 19:12:10
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-bioc-cner 1.34.0+dfsg-1+b16 (armhf) Sat, 21 Oct 2023 18:22:35 +0000 |
+==============================================================================+
Package: r-bioc-cner
Version: 1.34.0+dfsg-1+b16
Source Version: 1.34.0+dfsg-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-8c0d7efa-ebd7-41ab-95c1-3f316f399102' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 14.9 MB in 16s (938 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-cner' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-cner.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-cner.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7754 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-cner 1.34.0+dfsg-1 (dsc) [2393 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-cner 1.34.0+dfsg-1 (tar) [7747 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-cner 1.34.0+dfsg-1 (diff) [4172 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-cner-q12ehp/r-bioc-cner-1.34.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-cner-q12ehp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JQ9VTa/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JQ9VTa/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Packages [432 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils sgml-base
util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12119 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biostrings, r-cran-dbi, r-cran-rsqlite, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-rtracklayer, r-bioc-xvector, r-bioc-genomicalignments, r-bioc-s4vectors, r-bioc-iranges, r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2, r-cran-ggplot2, r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biostrings, r-cran-dbi, r-cran-rsqlite, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-rtracklayer, r-bioc-xvector, r-bioc-genomicalignments, r-bioc-s4vectors, r-bioc-iranges, r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2, r-cran-ggplot2, r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest
dpkg-deb: building package 'sbuild-build-depends-r-bioc-cner-dummy' in '/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive/sbuild-build-depends-r-bioc-cner-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-cner-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Sources [639 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ Packages [718 B]
Fetched 2690 B in 1s (3843 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-cner build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges
r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fansi r-cran-farver
r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr
r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw
r-cran-pracma r-cran-prettyunits r-cran-progress r-cran-r.methodss3
r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson
r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi
r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-tzdb
r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr
r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev
libboost-container1.81-dev libboost-context1.81-dev
libboost-contract1.81-dev libboost-coroutine1.81-dev
libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
libboost-filesystem1.81-dev libboost-graph1.81-dev
libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
libboost-program-options1.81-dev libboost-python1.81-dev
libboost-random1.81-dev libboost-regex1.81-dev
libboost-serialization1.81-dev libboost-stacktrace1.81-dev
libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter
r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr
r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-testthat r-cran-rmarkdown
r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation
r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-bsgenome
r-bioc-genomicfeatures r-bioc-hdf5array r-cran-lobstr
r-bioc-delayedmatrixstats r-bioc-edger r-bioc-gviz r-bioc-annotationhub
r-bioc-dexseq r-cran-digest r-cran-markdown r-bioc-sparsematrixstats
r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-callr
r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-unitizer
r-cran-forcats r-cran-waldo r-cran-lubridate r-cran-magick r-cran-sf
r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-base64enc
r-cran-r.devices r-cran-r.rsp r-cran-formattable r-cran-nanotime
r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
r-cran-quadprog r-cran-inline r-cran-fs r-cran-usethis r-cran-gert r-cran-gh
r-cran-rvest r-cran-xml2 r-cran-dichromat r-cran-rmpi r-cran-rlecuyer
r-cran-spelling r-cran-bench r-cran-brio r-cran-evaluate r-cran-here
r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr r-cran-plm
r-cran-zoo
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-cran-mockery r-cran-bench r-cran-brio r-cran-callr r-cran-covr
r-cran-decor r-cran-desc r-cran-knitr r-cran-lobstr r-cran-rmarkdown
r-cran-spelling r-cran-httpuv r-cran-webutils r-cran-testit r-cran-survival
r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps
r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart
r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-jpeg r-cran-r.rsp
r-cran-runit r-cran-digest r-cran-sodium r-cran-lubridate r-cran-doparallel
r-cran-foreach r-cran-iterators r-cran-itertools r-cran-dbitest
r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-mockr
r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-waldo
r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges
r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fansi r-cran-farver
r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr
r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw
r-cran-pracma r-cran-prettyunits r-cran-progress r-cran-r.methodss3
r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson
r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi
r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-tzdb
r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr
r-cran-xml r-cran-xtable r-cran-yaml sbuild-build-depends-r-bioc-cner-dummy
ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 275 newly installed, 0 to remove and 0 not upgraded.
Need to get 229 MB of archives.
After this operation, 695 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JQ9VTa/apt_archive ./ sbuild-build-depends-r-bioc-cner-dummy 0.invalid.0 [1012 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-4 [80.8 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:39 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.57.0-1 [61.6 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2 [363 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-4+rpi1 [247 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.3.0-10+rpi1 [285 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.3.0-10+rpi1 [7527 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20230625-2 [79.6 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20230625-2 [290 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2 [358 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-7 [10.4 MB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.46.0-1 [594 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.60.0-1 [2126 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.38.2+dfsg-1 [2047 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.34.1-1 [2247 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.1-1 [1653 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.4-1 [1336 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-cran-blob all 1.2.4-1 [49.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-cran-fastmap armhf 1.1.1-1 [67.1 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-cran-cachem armhf 1.0.8-1 [71.8 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-cran-rsqlite armhf 2.3.1-1 [995 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-curl armhf 5.1.0+dfsg-1 [172 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.7+dfsg-1 [439 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-sys armhf 3.4.2-1 [42.8 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-askpass armhf 1.2.0-1 [23.8 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.1+dfsg-1 [394 kB]
Ign:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.1+dfsg-1
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.46.0+dfsg-1 [9336 B]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.40.0-1 [617 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [787 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.36.4+dfsg-1 [3842 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.68.1-1 [13.8 MB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-bioc-keggrest all 1.40.1+dfsg-1 [186 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotationdbi all 1.62.2-1 [4715 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.14-2 [1740 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotate all 1.78.0+dfsg-1 [1738 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocio all 1.10.0+dfsg-1 [214 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.34.2-1 [1337 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.21-9-1 [1376 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-1-1 [3777 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.0.0-1 [471 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.12.3-1 [411 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.0.6+dfsg-1 [512 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.26.7+dfsg-1 [1751 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.52.1+dfsg-1 [1823 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.30.2+dfsg-1 [1144 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.2.0+dfsg-1 [1188 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rsamtools armhf 2.16.0+dfsg-2 [3496 kB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicalignments armhf 1.36.0-1 [2137 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-bioc-go.db all 3.17.0-1 [12.2 MB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:235 http://172.17.4.1/private trixie-staging/main armhf r-cran-yaml armhf 2.3.7-1 [92.3 kB]
Get:236 http://172.17.4.1/private trixie-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:237 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rtracklayer armhf 1.60.1-1 [5053 kB]
Get:238 http://172.17.4.1/private trixie-staging/main armhf r-cran-clipr all 0.8.0-1 [53.0 kB]
Get:239 http://172.17.4.1/private trixie-staging/main armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1691 kB]
Get:240 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.4-1 [612 kB]
Get:241 http://172.17.4.1/private trixie-staging/main armhf r-cran-farver armhf 2.1.1-1 [1390 kB]
Get:242 http://172.17.4.1/private trixie-staging/main armhf r-cran-gtable all 0.3.4+dfsg-1 [221 kB]
Get:243 http://172.17.4.1/private trixie-staging/main armhf r-cran-isoband armhf 0.2.7-1 [1611 kB]
Get:244 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:245 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.163-1 [2274 kB]
Get:246 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
Get:247 http://172.17.4.1/private trixie-staging/main armhf r-cran-labeling all 0.4.3-1 [62.4 kB]
Get:248 http://172.17.4.1/private trixie-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:249 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:250 http://172.17.4.1/private trixie-staging/main armhf r-cran-viridislite all 0.4.2-2 [1299 kB]
Get:251 http://172.17.4.1/private trixie-staging/main armhf r-cran-scales all 1.2.1-1 [614 kB]
Get:252 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:253 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB]
Get:254 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:255 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:256 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:257 http://172.17.4.1/private trixie-staging/main armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB]
Get:258 http://172.17.4.1/private trixie-staging/main armhf r-cran-hms all 1.1.3-1 [104 kB]
Get:259 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:260 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:261 http://172.17.4.1/private trixie-staging/main armhf r-cran-plyr armhf 1.8.9-1 [827 kB]
Get:262 http://172.17.4.1/private trixie-staging/main armhf r-cran-pracma all 2.4.2-1 [1699 kB]
Get:263 http://172.17.4.1/private trixie-staging/main armhf r-cran-powerlaw all 0.70.6-2 [3367 kB]
Get:264 http://172.17.4.1/private trixie-staging/main armhf r-cran-prettyunits all 1.2.0-1 [162 kB]
Get:265 http://172.17.4.1/private trixie-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:266 http://172.17.4.1/private trixie-staging/main armhf r-cran-r.methodss3 all 1.8.2-1 [84.5 kB]
Get:267 http://172.17.4.1/private trixie-staging/main armhf r-cran-r.oo all 1.25.0-1 [959 kB]
Get:268 http://172.17.4.1/private trixie-staging/main armhf r-cran-r.utils all 2.12.2-1 [1391 kB]
Get:269 http://172.17.4.1/private trixie-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:270 http://172.17.4.1/private trixie-staging/main armhf r-cran-tzdb armhf 0.4.0-2 [484 kB]
Get:271 http://172.17.4.1/private trixie-staging/main armhf r-cran-vroom armhf 1.6.4-1 [782 kB]
Get:272 http://172.17.4.1/private trixie-staging/main armhf r-cran-readr armhf 2.1.4-1 [752 kB]
Get:273 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringi armhf 1.7.12-1 [830 kB]
Get:274 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringr all 1.5.0-1 [295 kB]
Get:275 http://172.17.4.1/private trixie-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.1+dfsg-1 [394 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
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Unpacking m4 (1.4.19-4) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libdebhelper-perl (13.11.6) ...
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Unpacking libexpat1:armhf (2.5.0-2) ...
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Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.57.0-1) ...
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Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
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Setting up libencode-locale-perl (1.05-3) ...
Setting up libboost1.81-dev:armhf (1.81.0-7) ...
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Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up libfribidi0:armhf (1.0.13-3) ...
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Setting up libvariable-magic-perl (0.63-1+b1) ...
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Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
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Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up r-cran-bh (1.81.0-1) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20230625-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2) ...
Setting up libgfortran-12-dev:armhf (12.3.0-10+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
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Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.3.0-10+rpi1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2) ...
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Setting up libharfbuzz0b:armhf (8.0.1-1) ...
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Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
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Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
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Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libcairo2:armhf (1.18.0-1) ...
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Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.21-9-1) ...
Setting up r-cran-nlme (3.1.163-1) ...
Setting up r-cran-farver (2.1.1-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.14-2) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up r-cran-clipr (0.8.0-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.10-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-curl (5.1.0+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.46.0-1) ...
Setting up r-cran-rlang (1.1.1-1) ...
Setting up r-cran-matrixstats (1.0.0-1) ...
Setting up r-base-dev (4.3.1-4) ...
Setting up r-cran-pracma (2.4.2-1) ...
Setting up r-bioc-matrixgenerics (1.12.3-1) ...
Setting up r-cran-sys (3.4.2-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-yaml (2.3.7-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-prettyunits (1.2.0-1) ...
Setting up r-cran-fansi (1.0.4-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ...
Setting up r-cran-askpass (1.2.0-1) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-cran-r.methodss3 (1.8.2-1) ...
Setting up r-bioc-biobase (2.60.0-1) ...
Setting up r-cran-jsonlite (1.8.7+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.3-1) ...
Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
Setting up r-cran-stringi (1.7.12-1) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-cran-plyr (1.8.9-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.38.2+dfsg-1) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-gtable (0.3.4+dfsg-1) ...
Setting up r-cran-matrix (1.6-1-1) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up r-cran-powerlaw (0.70.6-2) ...
Setting up r-cran-cachem (1.0.8-1) ...
Setting up r-bioc-iranges (2.34.1-1) ...
Setting up dh-r (20230912) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-tzdb (0.4.0-2) ...
Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.6.4-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-cran-openssl (2.1.1+dfsg-1) ...
Setting up r-bioc-s4arrays (1.0.6+dfsg-1) ...
Setting up r-cran-stringr (1.5.0-1) ...
Setting up r-bioc-biocparallel (1.34.2-1) ...
Setting up r-bioc-rhtslib (2.2.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-bioc-biocio (1.10.0+dfsg-1) ...
Setting up r-cran-r.oo (1.25.0-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-bioc-genomeinfodb (1.36.4+dfsg-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-hms (1.1.3-1) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.40.0-1) ...
Setting up r-cran-rsqlite (2.3.1-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-delayedarray (0.26.7+dfsg-1) ...
Setting up r-cran-r.utils (2.12.2-1) ...
Setting up r-cran-vroom (1.6.4-1) ...
Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
Setting up r-bioc-genomicranges (1.52.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.68.1-1) ...
Setting up r-cran-readr (2.1.4-1) ...
Setting up r-bioc-rsamtools (2.16.0+dfsg-2) ...
Setting up r-bioc-summarizedexperiment (1.30.2+dfsg-1) ...
Setting up r-bioc-keggrest (1.40.1+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.62.2-1) ...
Setting up r-bioc-go.db (3.17.0-1) ...
Setting up r-bioc-annotate (1.78.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.36.0-1) ...
Setting up r-bioc-rtracklayer (1.60.1-1) ...
Setting up sbuild-build-depends-r-bioc-cner-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.0+rpi1 g++-12_12.3.0-10+rpi1 gcc-12_12.3.0-10+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++6_13.2.0-4+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-4 bsdutils_1:2.39.2-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.3.0-10+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.14 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.22.0+rpi1 dpkg-dev_1.22.0+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.3.0-10+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13-base_13.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.3.0-10+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-4 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-4+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-4+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-4 libboost-iostreams1.74.0_1.74.0+ds1-23 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r-bioc-genomeinfodbdata_1.2.10-1 r-bioc-genomicalignments_1.36.0-1 r-bioc-genomicranges_1.52.1+dfsg-1 r-bioc-go.db_3.17.0-1 r-bioc-iranges_2.34.1-1 r-bioc-keggrest_1.40.1+dfsg-1 r-bioc-matrixgenerics_1.12.3-1 r-bioc-rhtslib_2.2.0+dfsg-1 r-bioc-rsamtools_2.16.0+dfsg-2 r-bioc-rtracklayer_1.60.1-1 r-bioc-s4arrays_1.0.6+dfsg-1 r-bioc-s4vectors_0.38.2+dfsg-1 r-bioc-summarizedexperiment_1.30.2+dfsg-1 r-bioc-xvector_0.40.0-1 r-bioc-zlibbioc_1.46.0+dfsg-1 r-cran-abind_1.4-5-2 r-cran-askpass_1.2.0-1 r-cran-bh_1.81.0-1 r-cran-bit_4.0.5-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.4-1 r-cran-cachem_1.0.8-1 r-cran-cli_3.6.1-1 r-cran-clipr_0.8.0-1 r-cran-codetools_0.2-19-1 r-cran-colorspace_2.1-0+dfsg-1 r-cran-cpp11_0.4.6-1 r-cran-crayon_1.5.2-1 r-cran-curl_5.1.0+dfsg-1 r-cran-dbi_1.1.3-1 r-cran-fansi_1.0.4-1 r-cran-farver_2.1.1-1 r-cran-fastmap_1.1.1-1 r-cran-formatr_1.14-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-ggplot2_3.4.4+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gtable_0.3.4+dfsg-1 r-cran-hms_1.1.3-1 r-cran-httr_1.4.7+dfsg-1 r-cran-isoband_0.2.7-1 r-cran-jsonlite_1.8.7+dfsg-1 r-cran-labeling_0.4.3-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.21-9-1 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.18-2 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-1-1 r-cran-matrixstats_1.0.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.9-0-1 r-cran-mime_0.12-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.163-1 r-cran-openssl_2.1.1+dfsg-1 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-plogr_0.2.0-3 r-cran-plyr_1.8.9-1 r-cran-png_0.1-8-1 r-cran-powerlaw_0.70.6-2 r-cran-pracma_2.4.2-1 r-cran-prettyunits_1.2.0-1 r-cran-progress_1.2.2-2 r-cran-r.methodss3_1.8.2-1 r-cran-r.oo_1.25.0-1 r-cran-r.utils_2.12.2-1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.11-1 r-cran-rcurl_1.98-1.12+dfsg-1 r-cran-readr_2.1.4-1 r-cran-reshape2_1.4.4-2 r-cran-restfulr_0.0.15-1 r-cran-rjson_0.2.21-1 r-cran-rlang_1.1.1-1 r-cran-rsqlite_2.3.1-1 r-cran-scales_1.2.1-1 r-cran-snow_1:0.4.4-2 r-cran-stringi_1.7.12-1 r-cran-stringr_1.5.0-1 r-cran-sys_3.4.2-1 r-cran-tibble_3.2.1+dfsg-2 r-cran-tidyselect_1.2.0+dfsg-1 r-cran-tzdb_0.4.0-2 r-cran-utf8_1.2.3-1 r-cran-vctrs_0.6.4-1 r-cran-viridislite_0.4.2-2 r-cran-vroom_1.6.4-1 r-cran-withr_2.5.0-1 r-cran-xml_3.99-0.14-2 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.7-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-cner-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_37 util-linux_2.39.2-4 util-linux-extra_2.39.2-4 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Mon Nov 21 17:23:24 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.34.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-cner in /<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg
dpkg-source: info: unpacking r-bioc-cner_1.34.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-cner_1.34.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.34.0+dfsg-1+b16
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-8c0d7efa-ebd7-41ab-95c1-3f316f399102
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-cner
dpkg-buildpackage: info: source version 1.34.0+dfsg-1+b16
dpkg-buildpackage: info: source distribution trixie-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-cner/ -a -O--buildsystem=R
I: R Package: CNEr Version: 1.34.0
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 21 Nov 2022 18:17:14 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-cner-1.34.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-cner-1.34.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 21 Nov 2022 18:17:14 +0100'"
* installing *source* package 'CNEr' ...
** using staged installation
** libs
using C compiler: 'gcc (Raspbian 12.3.0-10+rpi1) 12.3.0'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg/src'
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_CNEr.c -o R_init_CNEr.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ceScan.c -o ceScan.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/axt.c -o ucsc/axt.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/base64.c -o ucsc/base64.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/binRange.c -o ucsc/binRange.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/bits.c -o ucsc/bits.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/chain.c -o ucsc/chain.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/cirTree.c -o ucsc/cirTree.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/common.c -o ucsc/common.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/dlist.c -o ucsc/dlist.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/dnaseq.c -o ucsc/dnaseq.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/dnautil.c -o ucsc/dnautil.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/dystring.c -o ucsc/dystring.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/errabort.c -o ucsc/errabort.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/hash.c -o ucsc/hash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/https.c -o ucsc/https.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/intExp.c -o ucsc/intExp.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/kxTok.c -o ucsc/kxTok.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/linefile.c -o ucsc/linefile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/localmem.c -o ucsc/localmem.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/memalloc.c -o ucsc/memalloc.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/obscure.c -o ucsc/obscure.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/options.c -o ucsc/options.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/pipeline.c -o ucsc/pipeline.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/_portimpl.c -o ucsc/_portimpl.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/sqlList.c -o ucsc/sqlList.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/sqlNum.c -o ucsc/sqlNum.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/verbose.c -o ucsc/verbose.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/os.c -o ucsc/os.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ucsc/wildcmp.c -o ucsc/wildcmp.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o CNEr.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_CNEr.o utils.o io.o ceScan.o ucsc/axt.o ucsc/base64.o ucsc/binRange.o ucsc/bits.o ucsc/chain.o ucsc/_cheapcgi.o ucsc/cirTree.o ucsc/common.o ucsc/dlist.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/dystring.o ucsc/errabort.o ucsc/hash.o ucsc/https.o ucsc/intExp.o ucsc/kxTok.o ucsc/linefile.o ucsc/localmem.o ucsc/memalloc.o ucsc/obscure.o ucsc/options.o ucsc/pipeline.o ucsc/_portimpl.o ucsc/sqlList.o ucsc/sqlNum.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg/debian/r-bioc-cner/usr/lib/R/site-library/00LOCK-r-bioc-cner-1.34.0+dfsg/00new/CNEr/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNEr)
rm -f /<<BUILDDIR>>/r-bioc-cner-1.34.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library/CNEr/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
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Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 305.
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-bioc-gviz for Suggests:Gviz (>= 1.7.4)
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
W: Cannot find a debian package for Suggests:BSgenome.Drerio.UCSC.danRer10
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg38
W: Cannot find a debian package for Suggests:TxDb.Drerio.UCSC.danRer10.refGene
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:BSgenome.Ggallus.UCSC.galGal3
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.4)
I: Using r-cran-dbi for Imports:DBI (>= 0.7)
I: Using r-cran-rsqlite for Imports:RSQLite (>= 0.11.4)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.1.3)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.23.16)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.25.5)
I: Using r-bioc-xvector for Imports:XVector (>= 0.5.4)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.9)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.13.13)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.5.27)
I: Using r-cran-readr for Imports:readr (>= 0.2.2)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-cran-reshape2 for Imports:reshape2 (>= 1.4.1)
I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.1.0)
I: Using r-cran-powerlaw for Imports:poweRlaw (>= 0.60.3)
I: Using r-bioc-annotate for Imports:annotate (>= 1.50.0)
I: Using r-bioc-go.db for Imports:GO.db (>= 3.3.0)
I: Using r-cran-r.utils for Imports:R.utils (>= 2.3.0)
I: Using r-bioc-keggrest for Imports:KEGGREST (>= 1.14.0)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-cner as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg'
dh_fixperms
find debian -name "*.Rmd" -executable -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-cner-1.34.0+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-cner-dbgsym' in '../r-bioc-cner-dbgsym_1.34.0+dfsg-1+b16_armhf.deb'.
dpkg-deb: building package 'r-bioc-cner' in '../r-bioc-cner_1.34.0+dfsg-1+b16_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-cner_1.34.0+dfsg-1+b16_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-bioc-cner_1.34.0+dfsg-1+b16_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-10-21T19:11:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-cner_1.34.0+dfsg-1+b16_armhf.changes:
--------------------------------------------
Format: 1.8
Date: Mon, 21 Nov 2022 18:17:14 +0100
Source: r-bioc-cner (1.34.0+dfsg-1)
Binary: r-bioc-cner r-bioc-cner-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.34.0+dfsg-1+b16
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
r-bioc-cner - CNE Detection and Visualization
Changes:
r-bioc-cner (1.34.0+dfsg-1+b16) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-cner-dbgsym_1.34.0+dfsg-1+b16_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 93060 bytes: control archive=544 bytes.
416 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-cner-dbgsym
Source: r-bioc-cner (1.34.0+dfsg-1)
Version: 1.34.0+dfsg-1+b16
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 153
Depends: r-bioc-cner (= 1.34.0+dfsg-1+b16)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-cner
Build-Ids: 0ba00972556a434215269d8a56aa098d7c25a247
drwxr-xr-x root/root 0 2022-11-21 17:17 ./
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root 146148 2022-11-21 17:17 ./usr/lib/debug/.build-id/0b/a00972556a434215269d8a56aa098d7c25a247.debug
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/share/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-21 17:17 ./usr/share/doc/r-bioc-cner-dbgsym -> r-bioc-cner
r-bioc-cner_1.34.0+dfsg-1+b16_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 8380516 bytes: control archive=2596 bytes.
1126 bytes, 14 lines control
5039 bytes, 61 lines md5sums
Package: r-bioc-cner
Source: r-bioc-cner (1.34.0+dfsg-1)
Version: 1.34.0+dfsg-1+b16
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 17884
Depends: r-api-4.0, r-api-bioc-3.16, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite (>= 0.11.4), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr (>= 0.2.2), r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw (>= 0.60.3), r-bioc-annotate (>= 1.50.0), r-bioc-go.db (>= 3.3.0), r-cran-r.utils (>= 2.3.0), r-bioc-keggrest (>= 1.14.0), libc6 (>= 2.33)
Suggests: r-bioc-gviz (>= 1.7.4), r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/CNEr/
Description: CNE Detection and Visualization
Large-scale identification and advanced visualization
of sets of conserved noncoding elements.
drwxr-xr-x root/root 0 2022-11-21 17:17 ./
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/
-rw-r--r-- root/root 778 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/CITATION
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drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/Meta/
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-rw-r--r-- root/root 2071 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/Meta/hsearch.rds
-rw-r--r-- root/root 1345 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/Meta/links.rds
-rw-r--r-- root/root 1974 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/Meta/nsInfo.rds
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-rw-r--r-- root/root 5145 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/NAMESPACE
-rw-r--r-- root/root 1456 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/NEWS
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/R/
-rw-r--r-- root/root 1058 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/R/CNEr
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-rw-r--r-- root/root 3828 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/R/CNEr.rdx
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-rw-r--r-- root/root 7284 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/CNEHg38DanRer10.rda
-rw-r--r-- root/root 1144 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/axisTrack.rda
-rw-r--r-- root/root 9296 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/cneFinalListDanRer10Hg38.rda
-rw-r--r-- root/root 1528 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/cpgIslands.rda
-rw-r--r-- root/root 1468 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/grangesPairsForDotplot.rda
-rw-r--r-- root/root 2528 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/data/refGenes.rda
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/
-rw-r--r-- root/root 14052 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/CNEr.R
-rw-r--r-- root/root 29697 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/CNEr.Rmd
-rw-r--r-- root/root 5187 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.R
-rw-r--r-- root/root 8891 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.Rmd
-rw-r--r-- root/root 1995 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/doc/index.html
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/
-rw-r--r-- root/root 4090418 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/chr4.hg19.galGal3.net.axt.gz
-rw-r--r-- root/root 1258426 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/cne2wBf_AstMex102_danRer10_48_50
-rw-r--r-- root/root 1198055 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/cne2wBf_cteIde1_danRer10_100_100
-rw-r--r-- root/root 1205502 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/cne2wBf_cypCar1_danRer10_100_100
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-rw-r--r-- root/root 329735 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/danRer10.hg38.net.axt
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-rw-r--r-- root/root 12656 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/filter_regions.hg38.bed
-rw-r--r-- root/root 36650 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/extdata/hg38.danRer10.net.axt
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-rw-r--r-- root/root 3584 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/help/AnIndex
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-rw-r--r-- root/root 1350 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/help/CNEr.rdx
-rw-r--r-- root/root 1158 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/help/aliases.rds
-rw-r--r-- root/root 652 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/help/paths.rds
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/html/
-rw-r--r-- root/root 14914 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/html/00Index.html
-rw-r--r-- root/root 1844 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/html/R.css
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drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/obsolete/
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drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/lib/R/site-library/CNEr/scripts/
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drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/share/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-21 17:17 ./usr/share/doc/r-bioc-cner/
-rw-r--r-- root/root 227 2022-11-21 17:17 ./usr/share/doc/r-bioc-cner/changelog.Debian.armhf.gz
-rw-r--r-- root/root 964 2022-11-21 17:17 ./usr/share/doc/r-bioc-cner/changelog.Debian.gz
-rw-r--r-- root/root 2367 2022-11-21 17:17 ./usr/share/doc/r-bioc-cner/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 44640
Build-Time: 702
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 2214
Job: r-bioc-cner_1.34.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-cner
Package-Time: 2964
Source-Version: 1.34.0+dfsg-1
Space: 44640
Status: successful
Version: 1.34.0+dfsg-1+b16
--------------------------------------------------------------------------------
Finished at 2023-10-21T19:11:59Z
Build needed 00:49:24, 44640k disc space