r-bioc-biovizbase →
1.40.0-2 →
armhf → 2021-10-01 03:20:25
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-biovizbase 1.40.0-2 (armhf) Fri, 01 Oct 2021 03:01:39 +0000 |
+==============================================================================+
Package: r-bioc-biovizbase
Version: 1.40.0-2
Source Version: 1.40.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-bc9f3f79-5548-4c73-998d-91c413b46f37' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biovizbase' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-biovizbase.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-biovizbase.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2422 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-biovizbase 1.40.0-2 (dsc) [2584 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-biovizbase 1.40.0-2 (tar) [2414 kB]
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| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-SyLWNb/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
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gpg: /<<BUILDDIR>>/resolver-SyLWNb/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SyLWNb/apt_archive ./ InRelease
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
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+------------------------------------------------------------------------------+
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Arch check ok (armhf included in any)
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| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-scales, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-dichromat, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.23.19), r-bioc-iranges (>= 1.99.28), r-bioc-genomeinfodb (>= 1.5.14), r-bioc-genomicranges (>= 1.23.21), r-bioc-summarizedexperiment, r-bioc-biostrings (>= 2.33.11), r-bioc-rsamtools (>= 1.17.28), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomicfeatures (>= 1.21.19), r-bioc-annotationdbi, r-bioc-variantannotation (>= 1.11.4), r-bioc-ensembldb (>= 1.99.13), r-bioc-annotationfilter, r-cran-rlang
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-scales, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-dichromat, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.23.19), r-bioc-iranges (>= 1.99.28), r-bioc-genomeinfodb (>= 1.5.14), r-bioc-genomicranges (>= 1.23.21), r-bioc-summarizedexperiment, r-bioc-biostrings (>= 2.33.11), r-bioc-rsamtools (>= 1.17.28), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomicfeatures (>= 1.21.19), r-bioc-annotationdbi, r-bioc-variantannotation (>= 1.11.4), r-bioc-ensembldb (>= 1.99.13), r-bioc-annotationfilter, r-cran-rlang
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biovizbase-dummy' in '/<<BUILDDIR>>/resolver-SyLWNb/apt_archive/sbuild-build-depends-r-bioc-biovizbase-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biovizbase-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-SyLWNb/apt_archive ./ InRelease
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Install r-bioc-biovizbase build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core
fonts-glyphicons-halflings fonts-mathjax g++-10 gcc-10 gcc-10-base
gcc-11-base gettext gettext-base gfortran gfortran-10 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libasan6 libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev
libgcc-s1 libgfortran-10-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-mathjax liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libstdc++-10-dev libstdc++6
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-html5shiv
node-normalize.css openssl pkg-config po-debconf r-base-core r-base-dev
r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics
r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
r-bioc-zlibbioc r-cran-acepack r-cran-askpass r-cran-assertthat
r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-cachem r-cran-checkmate r-cran-chron
r-cran-cli r-cran-cluster r-cran-colorspace r-cran-cpp11 r-cran-crayon
r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-dichromat
r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi
r-cran-farver r-cran-fastmap r-cran-filelock r-cran-foreign r-cran-formatr
r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr
r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets
r-cran-httr r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr
r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r6
r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-restfulr
r-cran-rjson r-cran-rlang r-cran-rpart r-cran-rsqlite r-cran-rstudioapi
r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-survival
r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8
r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun
r-cran-xml r-cran-xml2 r-cran-yaml sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales debtags dh-make
postgresql-client-common gcc-10-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-10-doc libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc
ncurses-doc libscalar-number-perl readline-doc libstdc++-10-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser nodejs libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle
r-cran-testthat r-bioc-all r-cran-rmarkdown r-bioc-affy r-bioc-deseq2
r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-shortread
r-cran-codetools r-cran-mockery r-cran-biocmanager r-bioc-hdf5array
r-bioc-genefilter r-bioc-delayedmatrixstats r-bioc-gviz r-bioc-annotationhub
r-bioc-edger r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma
r-bioc-rhdf5 r-cran-covr r-cran-roxygen2 r-cran-devtools r-cran-tinytest
r-cran-callr r-cran-prettycode r-cran-processx r-cran-ps r-cran-shiny
r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs
r-cran-bench r-cran-desc r-cran-r.utils r-cran-xts r-cran-nanotime
r-cran-zoo r-cran-rmysql r-cran-broom r-cran-rpostgresql r-cran-unitizer
r-cran-forcats r-cran-lubridate r-cran-cairo r-cran-ragg r-cran-httpuv
r-cran-readr r-cran-magick r-cran-sf r-cran-plyr r-cran-rgl r-cran-webshot
r-cran-reticulate r-cran-sass r-cran-getopt r-cran-formattable r-cran-units
r-cran-inline r-cran-gert r-cran-gh r-cran-rvest r-cran-rmpi r-cran-rsprng
r-cran-rlecuyer r-cran-zeallot r-cran-tinytex r-cran-remotes
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
javascript-common libdevel-partialdump-perl libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-cran-runit r-cran-testthat r-cran-batchjobs r-cran-doparallel
r-cran-batchtools r-cran-rmpi r-bioc-biovizbase r-bioc-snpstats
r-cran-fastmatch r-cran-mockery r-cran-decor r-cran-brio r-cran-httpuv
r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-testit
r-cran-codetools r-cran-pkgload r-cran-covr r-cran-ragg r-cran-hexbin
r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp
r-cran-quantreg r-cran-rmarkdown r-cran-sf r-cran-svglite r-cran-vdiffr
r-cran-sp r-cran-tikzdevice r-cran-tinytex node-highlight.js r-cran-sodium
r-cran-lubridate r-cran-dbitest r-cran-mockr r-cran-waldo
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings
fonts-mathjax gettext gettext-base gfortran gfortran-10 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1 libffi8
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-mathjax liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db node-html5shiv node-normalize.css openssl
pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi
r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart
r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest
r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment
r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-acepack
r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bh
r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem
r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-colorspace
r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi
r-cran-dbplyr r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-ellipsis
r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock
r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger
r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue
r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms
r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httr
r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis
r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2
r-cran-yaml sbuild-build-depends-r-bioc-biovizbase-dummy sensible-utils ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base gcc-11-base libasan6 libatomic1 libcc1-0
libgcc-10-dev libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
14 upgraded, 318 newly installed, 0 to remove and 8 not upgraded.
Need to get 279 MB of archives.
After this operation, 657 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-SyLWNb/apt_archive ./ sbuild-build-depends-r-bioc-biovizbase-dummy 0.invalid.0 [1080 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-7+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-7+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-7+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-7+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-7+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-7+rpi1 [37.7 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-7+rpi1 [8188 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-7+rpi1 [465 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf node-normalize.css all 8.0.1-3 [12.5 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-11+rpi1 [7350 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-11+rpi1 [13.4 MB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-11+rpi1 [1755 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-11+rpi1 [678 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-11+rpi1 [6690 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-11+rpi1 [206 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-7+rpi1 [235 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-2 [173 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-datatables all 1.10.21+dfsg-2 [138 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.13-2 [94.5 kB]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf littler all 0.3.13-2 [16.4 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-3 [12.9 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.52.0-1 [2214 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.30.0-1 [2064 kB]
Get:200 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.26.0-1 [2205 kB]
Get:201 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.1-1 [619 kB]
Get:202 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:203 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:204 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rlang armhf 0.4.11-1 [1186 kB]
Get:205 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:206 http://172.17.0.1/private bookworm-staging/main armhf r-cran-glue armhf 1.4.2-1 [139 kB]
Get:207 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.3.8-1 [1099 kB]
Get:208 http://172.17.0.1/private bookworm-staging/main armhf r-cran-blob all 1.2.2-1 [50.0 kB]
Get:209 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:210 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:211 http://172.17.0.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.0-1 [52.9 kB]
Get:212 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:213 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:214 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:215 http://172.17.0.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:216 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.8-1 [949 kB]
Get:217 http://172.17.0.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.2+dfsg-1 [153 kB]
Get:218 http://172.17.0.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.7.2+dfsg-1 [442 kB]
Get:219 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mime armhf 0.11-1 [35.5 kB]
Get:220 http://172.17.0.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4-1 [42.7 kB]
Get:221 http://172.17.0.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:222 http://172.17.0.1/private bookworm-staging/main armhf r-cran-openssl armhf 1.4.5+dfsg-1 [373 kB]
Get:223 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:224 http://172.17.0.1/private bookworm-staging/main armhf r-cran-httr all 1.4.2-1 [478 kB]
Get:225 http://172.17.0.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:226 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.38.0+dfsg-1 [9008 B]
Get:227 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.32.0-1 [609 kB]
Get:228 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:229 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.5-1 [800 kB]
Get:230 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB]
Get:231 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.28.4-1 [3921 kB]
Get:232 http://172.17.0.1/private bookworm-staging/main armhf r-cran-crayon all 1.4.1-1 [145 kB]
Get:233 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.60.2-1 [14.2 MB]
Get:234 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.32.0+dfsg-1 [179 kB]
Get:235 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.54.1-2 [4681 kB]
Get:236 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.44.0+dfsg-1 [1861 kB]
Get:237 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [141 kB]
Get:238 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-annotationfilter all 1.16.0+dfsg-1 [232 kB]
Get:239 http://172.17.0.1/private bookworm-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:240 http://172.17.0.1/private bookworm-staging/main armhf r-cran-generics all 0.1.0-1 [73.5 kB]
Get:241 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.0-1 [91.2 kB]
Get:242 http://172.17.0.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.1-1 [197 kB]
Get:243 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cli armhf 3.0.1-1 [735 kB]
Get:244 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fansi armhf 0.5.0-1 [379 kB]
Get:245 http://172.17.0.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:246 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pillar all 1.6.2+dfsg-1 [410 kB]
Get:247 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.0.6+dfsg-1 [417 kB]
Get:248 http://172.17.0.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:249 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.1.1+dfsg-1 [194 kB]
Get:250 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.4-1 [1154 kB]
Get:251 http://172.17.0.1/private bookworm-staging/main armhf r-cran-withr all 2.4.2-1 [213 kB]
Get:252 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dbplyr all 2.1.1-1 [811 kB]
Get:253 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:254 http://172.17.0.1/private bookworm-staging/main armhf r-cran-filelock armhf 1.0.2-2 [24.2 kB]
Get:255 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocfilecache all 2.0.0+dfsg-1 [298 kB]
Get:256 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocio all 1.2.0+dfsg-2 [202 kB]
Get:257 http://172.17.0.1/private bookworm-staging/main armhf r-cran-formatr all 1.11-1 [147 kB]
Get:258 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:259 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:260 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:261 http://172.17.0.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.3-2 [109 kB]
Get:262 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:263 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.26.2-1 [1187 kB]
Get:264 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.8-1 [1720 kB]
Get:265 http://172.17.0.1/private bookworm-staging/main armhf r-cran-hms all 1.1.0-1 [103 kB]
Get:266 http://172.17.0.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:267 http://172.17.0.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:268 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.4-1 [773 kB]
Get:269 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:270 http://172.17.0.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.28-1 [187 kB]
Get:271 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xml2 armhf 1.3.2-2 [275 kB]
Get:272 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biomart all 2.48.3+dfsg-1 [435 kB]
Get:273 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 1.24.0+dfsg-1 [946 kB]
Get:274 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.8.0-1 [3538 kB]
Get:275 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:276 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.4.3-1 [301 kB]
Get:277 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:278 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-4-2 [3573 kB]
Get:279 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.18.0+dfsg-2 [1987 kB]
Get:280 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.22.0+dfsg-1 [1982 kB]
Get:281 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.28.0-1 [2198 kB]
Get:282 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.20-2 [125 kB]
Get:283 http://172.17.0.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.2.1-1+b1 [92.2 kB]
Get:284 http://172.17.0.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.13-2 [346 kB]
Get:285 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.52.1-1 [5111 kB]
Get:286 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.60.0-1 [7184 kB]
Get:287 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicfeatures all 1.44.2+dfsg-1 [1833 kB]
Get:288 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-protgenerics all 1.24.0-1 [215 kB]
Get:289 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-ensembldb all 2.16.4+dfsg-1 [1508 kB]
Get:290 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-variantannotation armhf 1.38.0-1 [3390 kB]
Get:291 http://172.17.0.1/private bookworm-staging/main armhf r-cran-acepack armhf 1.4.1-2+b2 [57.6 kB]
Get:292 http://172.17.0.1/private bookworm-staging/main armhf r-cran-backports armhf 1.2.1-1 [90.1 kB]
Get:293 http://172.17.0.1/private bookworm-staging/main armhf r-cran-base64enc armhf 0.1-3-3 [27.8 kB]
Get:294 http://172.17.0.1/private bookworm-staging/main armhf r-cran-checkmate armhf 2.0.0-1+b1 [600 kB]
Get:295 http://172.17.0.1/private bookworm-staging/main armhf r-cran-chron armhf 2.3-56-1 [196 kB]
Get:296 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.2-2 [551 kB]
Get:297 http://172.17.0.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-2+dfsg-1 [1690 kB]
Get:298 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.3.1-2 [150 kB]
Get:299 http://172.17.0.1/private bookworm-staging/main armhf r-cran-data.table armhf 1.14.0+dfsg-1 [1689 kB]
Get:300 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dichromat all 1:2.0-0-3 [148 kB]
Get:301 http://172.17.0.1/private bookworm-staging/main armhf r-cran-evaluate all 0.14-2 [81.1 kB]
Get:302 http://172.17.0.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:303 http://172.17.0.1/private bookworm-staging/main armhf r-cran-foreign armhf 0.8.81-1 [247 kB]
Get:304 http://172.17.0.1/private bookworm-staging/main armhf r-cran-formula all 1.2-4-1 [175 kB]
Get:305 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:306 http://172.17.0.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:307 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-54-2 [1117 kB]
Get:308 http://172.17.0.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:309 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-37-1 [2980 kB]
Get:310 http://172.17.0.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:311 http://172.17.0.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:312 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:313 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:314 http://172.17.0.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:315 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.5+dfsg-2 [3215 kB]
Get:316 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:317 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xfun armhf 0.26-1 [338 kB]
Get:318 http://172.17.0.1/private bookworm-staging/main armhf r-cran-highr all 0.9+dfsg-1 [38.6 kB]
Get:319 http://172.17.0.1/private bookworm-staging/main armhf r-cran-survival armhf 3.2-13-1 [6598 kB]
Get:320 http://172.17.0.1/private bookworm-staging/main armhf r-cran-jpeg armhf 0.1-9-1 [29.6 kB]
Get:321 http://172.17.0.1/private bookworm-staging/main armhf r-cran-latticeextra all 0.6-29-3 [2192 kB]
Get:322 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rpart armhf 4.1-15-2+b1 [699 kB]
Get:323 http://172.17.0.1/private bookworm-staging/main armhf r-cran-nnet armhf 7.3-16-2 [111 kB]
Get:324 http://172.17.0.1/private bookworm-staging/main armhf r-cran-markdown armhf 1.1+dfsg-1+b1 [120 kB]
Get:325 http://172.17.0.1/private bookworm-staging/main armhf r-cran-knitr all 1.33+dfsg-1 [849 kB]
Get:326 http://172.17.0.1/private bookworm-staging/main armhf r-cran-htmltools armhf 0.5.2-1 [352 kB]
Get:327 http://172.17.0.1/private bookworm-staging/main armhf r-cran-htmlwidgets all 1.5.4+dfsg-1 [124 kB]
Get:328 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rstudioapi all 0.13-1 [262 kB]
Get:329 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tidyr armhf 1.1.3-1 [789 kB]
Get:330 http://172.17.0.1/private bookworm-staging/main armhf r-cran-htmltable all 2.2.1-2 [372 kB]
Get:331 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridis all 0.6.1-2 [2999 kB]
Get:332 http://172.17.0.1/private bookworm-staging/main armhf r-cran-hmisc armhf 4.5-0-1 [3186 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libswitch-perl (2.17-2.1) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.6-4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up libatomic1:armhf (11.2.0-7+rpi1) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up libtcl8.6:armhf (8.6.11+dfsg-1) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up icu-devtools (67.1-7) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libpcre2-posix2:armhf (10.36-2) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libgfortran5:armhf (11.2.0-7+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up libubsan1:armhf (11.2.0-7+rpi1) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libffi8:armhf (3.4.2-2) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up libjs-highlight.js (9.18.5+dfsg1-1) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-4.1) ...
Setting up libdevel-globaldestruction-perl (0.14-1.1) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.2.0-1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up openssl (1.1.1l-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up node-normalize.css (8.0.1-3) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (11.2.0-7+rpi1) ...
Setting up liburi-perl (5.08-1) ...
Setting up cpp-10 (10.3.0-11+rpi1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libjs-bootstrap (3.4.1+dfsg-2) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.2+20201114-4) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libpcre2-dev:armhf (10.36-2) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libglib2.0-0:armhf (2.70.0-1) ...
No schema files found: doing nothing.
Setting up libgcc-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev:armhf (1:2.0.6-4) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up libjs-jquery-datatables (1.10.21+dfsg-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-4.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up pkg-config (0.29.2-1) ...
Setting up ucf (3.0043) ...
Setting up gcc-10 (10.3.0-11+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libncurses5-dev:armhf (6.2+20201114-4) ...
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libgfortran-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.33-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libstdc++-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up libboost1.74-dev:armhf (1.74.0-9) ...
Setting up g++-10 (10.3.0-11+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up gfortran-10 (10.3.0-11+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up r-base-core (4.1.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.4.1-1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-41-1+b1) ...
Setting up r-cran-nlme (3.1.153-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up r-cran-formatr (1.11-1) ...
Setting up r-cran-formula (1.2-4-1) ...
Setting up r-cran-xml (3.99-0.8-1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up r-cran-cluster (2.1.2-2) ...
Setting up r-cran-nnet (7.3-16-2) ...
Setting up r-cran-lazyeval (0.2.2-1+b1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-jpeg (0.1-9-1) ...
Setting up r-cran-chron (2.3-56-1) ...
Setting up r-cran-magrittr (2.0.1-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.6-1) ...
Setting up r-cran-littler (0.3.13-2) ...
Setting up r-cran-rcpp (1.0.7-2) ...
Setting up r-cran-curl (4.3.2+dfsg-1) ...
Setting up r-bioc-biocgenerics (0.38.0-1) ...
Setting up r-cran-rlang (0.4.11-1) ...
Setting up r-cran-matrixstats (0.61.0-1) ...
Setting up r-base-dev (4.1.1-2) ...
Setting up r-cran-assertthat (0.2.1-2) ...
Setting up littler (0.3.13-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-matrixgenerics (1.4.3-1) ...
Setting up r-cran-xfun (0.26-1) ...
Setting up r-cran-sys (3.4-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.4.2-1) ...
Setting up r-cran-backports (1.2.1-1) ...
Setting up r-cran-mime (0.11-1) ...
Setting up r-cran-generics (0.1.0-1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-digest (0.6.28-1) ...
Setting up r-cran-yaml (2.2.1-1+b1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-xml2 (1.3.2-2) ...
Setting up r-bioc-protgenerics (1.24.0-1) ...
Setting up r-cran-evaluate (0.14-2) ...
Setting up r-cran-dbi (1.1.1-1) ...
Setting up r-cran-highr (0.9+dfsg-1) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (0.5.0-1) ...
Setting up r-cran-mass (7.3-54-2) ...
Setting up r-cran-checkmate (2.0.0-1+b1) ...
Setting up r-cran-acepack (1.4.1-2+b2) ...
Setting up r-cran-snow (1:0.4.3-2) ...
Setting up r-cran-data.table (1.14.0+dfsg-1) ...
Setting up r-cran-glue (1.4.2-1) ...
Setting up r-cran-foreign (0.8.81-1) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-cli (3.0.1-1) ...
Setting up r-cran-lifecycle (1.0.0-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-cran-dichromat (1:2.0-0-3) ...
Setting up r-bioc-zlibbioc (1.38.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-7-4) ...
Setting up r-bioc-biobase (2.52.0-1) ...
Setting up r-cran-jsonlite (1.7.2+dfsg-1) ...
Setting up r-cran-rstudioapi (0.13-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-2+dfsg-1) ...
Setting up r-cran-stringi (1.7.4-1) ...
Setting up r-cran-markdown (1.1+dfsg-1+b1) ...
Setting up r-cran-cpp11 (0.3.1-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-3) ...
Setting up r-bioc-s4vectors (0.30.0-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-matrix (1.3-4-2) ...
Setting up r-cran-htmltools (0.5.2-1) ...
Setting up r-cran-mgcv (1.8-37-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-bioc-iranges (2.26.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rjson (0.2.20-2) ...
Setting up r-cran-rcurl (1.98-1.5-1) ...
Setting up r-cran-restfulr (0.0.13-2) ...
Setting up r-bioc-delayedarray (0.18.0+dfsg-2) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (1.4.5+dfsg-1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up r-bioc-biocparallel (1.26.2-1) ...
Setting up r-bioc-rhtslib (1.24.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-survival (3.2-13-1) ...
Setting up r-bioc-biocio (1.2.0+dfsg-2) ...
Setting up r-cran-latticeextra (0.6-29-3) ...
Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.28.4-1) ...
Setting up r-cran-httr (1.4.2-1) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-memoise (2.0.0-1) ...
Setting up r-bioc-xvector (0.32.0-1) ...
Setting up r-cran-knitr (1.33+dfsg-1) ...
Setting up r-cran-vctrs (0.3.8-1) ...
Setting up r-cran-pillar (1.6.2+dfsg-1) ...
Setting up r-bioc-genomicranges (1.44.0+dfsg-1) ...
Setting up r-cran-rpart (4.1-15-2+b1) ...
Setting up r-bioc-biostrings (2.60.2-1) ...
Setting up r-cran-tibble (3.0.6+dfsg-1) ...
Setting up r-bioc-annotationfilter (1.16.0+dfsg-1) ...
Setting up r-cran-tidyselect (1.1.1+dfsg-1) ...
Setting up r-cran-hms (1.1.0-1) ...
Setting up r-cran-blob (1.2.2-1) ...
Setting up r-bioc-rsamtools (2.8.0-1) ...
Setting up r-cran-dplyr (1.0.4-1) ...
Setting up r-cran-dbplyr (2.1.1-1) ...
Setting up r-cran-rsqlite (2.2.8-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-summarizedexperiment (1.22.0+dfsg-1) ...
Setting up r-bioc-biocfilecache (2.0.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.32.0+dfsg-1) ...
Setting up r-cran-ggplot2 (3.3.5+dfsg-2) ...
Setting up r-bioc-annotationdbi (1.54.1-2) ...
Setting up r-cran-viridis (0.6.1-2) ...
Setting up r-bioc-biomart (2.48.3+dfsg-1) ...
Setting up r-cran-tidyr (1.1.3-1) ...
Setting up r-bioc-genomicalignments (1.28.0-1) ...
Setting up r-bioc-rtracklayer (1.52.1-1) ...
Setting up r-bioc-genomicfeatures (1.44.2+dfsg-1) ...
Setting up r-cran-htmltable (2.2.1-2) ...
Setting up r-bioc-bsgenome (1.60.0-1) ...
Setting up r-bioc-ensembldb (2.16.4+dfsg-1) ...
Setting up r-cran-hmisc (4.5-0-1) ...
Setting up r-bioc-variantannotation (1.38.0-1) ...
Setting up sbuild-build-depends-r-bioc-biovizbase-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-7+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 fonts-mathjax_2.7.9+dfsg-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 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r-bioc-ensembldb_2.16.4+dfsg-1 r-bioc-genomeinfodb_1.28.4-1 r-bioc-genomeinfodbdata_1.2.6-1 r-bioc-genomicalignments_1.28.0-1 r-bioc-genomicfeatures_1.44.2+dfsg-1 r-bioc-genomicranges_1.44.0+dfsg-1 r-bioc-iranges_2.26.0-1 r-bioc-keggrest_1.32.0+dfsg-1 r-bioc-matrixgenerics_1.4.3-1 r-bioc-protgenerics_1.24.0-1 r-bioc-rhtslib_1.24.0+dfsg-1 r-bioc-rsamtools_2.8.0-1 r-bioc-rtracklayer_1.52.1-1 r-bioc-s4vectors_0.30.0-1 r-bioc-summarizedexperiment_1.22.0+dfsg-1 r-bioc-variantannotation_1.38.0-1 r-bioc-xvector_0.32.0-1 r-bioc-zlibbioc_1.38.0+dfsg-1 r-cran-acepack_1.4.1-2+b2 r-cran-askpass_1.1-2 r-cran-assertthat_0.2.1-2 r-cran-backports_1.2.1-1 r-cran-base64enc_0.1-3-3 r-cran-bh_1.74.0-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.2-1 r-cran-cachem_1.0.6-1 r-cran-checkmate_2.0.0-1+b1 r-cran-chron_2.3-56-1 r-cran-cli_3.0.1-1 r-cran-cluster_2.1.2-2 r-cran-colorspace_2.0-2+dfsg-1 r-cran-cpp11_0.3.1-2 r-cran-crayon_1.4.1-1 r-cran-curl_4.3.2+dfsg-1 r-cran-data.table_1.14.0+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-dbplyr_2.1.1-1 r-cran-dichromat_1:2.0-0-3 r-cran-digest_0.6.28-1 r-cran-dplyr_1.0.4-1 r-cran-ellipsis_0.3.2-2 r-cran-evaluate_0.14-2 r-cran-fansi_0.5.0-1 r-cran-farver_2.1.0-1 r-cran-fastmap_1.1.0-1 r-cran-filelock_1.0.2-2 r-cran-foreign_0.8.81-1 r-cran-formatr_1.11-1 r-cran-formula_1.2-4-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-generics_0.1.0-1 r-cran-ggplot2_3.3.5+dfsg-2 r-cran-glue_1.4.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.0+dfsg-2 r-cran-highr_0.9+dfsg-1 r-cran-hmisc_4.5-0-1 r-cran-hms_1.1.0-1 r-cran-htmltable_2.2.1-2 r-cran-htmltools_0.5.2-1 r-cran-htmlwidgets_1.5.4+dfsg-1 r-cran-httr_1.4.2-1 r-cran-isoband_0.2.5-1 r-cran-jpeg_0.1-9-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-knitr_1.33+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-41-1+b1 r-cran-latticeextra_0.6-29-3 r-cran-lazyeval_0.2.2-1+b1 r-cran-lifecycle_1.0.0-1 r-cran-littler_0.3.13-2 r-cran-magrittr_2.0.1-1 r-cran-markdown_1.1+dfsg-1+b1 r-cran-mass_7.3-54-2 r-cran-matrix_1.3-4-2 r-cran-matrixstats_0.61.0-1 r-cran-memoise_2.0.0-1 r-cran-mgcv_1.8-37-1 r-cran-mime_0.11-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.153-1 r-cran-nnet_7.3-16-2 r-cran-openssl_1.4.5+dfsg-1 r-cran-pillar_1.6.2+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-png_0.1-7-4 r-cran-prettyunits_1.1.1-2 r-cran-progress_1.2.2-2 r-cran-purrr_0.3.4-1+b1 r-cran-r6_2.5.1-1 r-cran-rappdirs_0.3.3-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-restfulr_0.0.13-2 r-cran-rjson_0.2.20-2 r-cran-rlang_0.4.11-1 r-cran-rpart_4.1-15-2+b1 r-cran-rsqlite_2.2.8-1 r-cran-rstudioapi_0.13-1 r-cran-scales_1.1.1-1 r-cran-snow_1:0.4.3-2 r-cran-stringi_1.7.4-1 r-cran-stringr_1.4.0-2 r-cran-survival_3.2-13-1 r-cran-sys_3.4-1 r-cran-tibble_3.0.6+dfsg-1 r-cran-tidyr_1.1.3-1 r-cran-tidyselect_1.1.1+dfsg-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.3.8-1 r-cran-viridis_0.6.1-2 r-cran-viridislite_0.4.0-2 r-cran-withr_2.4.2-1 r-cran-xfun_0.26-1 r-cran-xml_3.99-0.8-1 r-cran-xml2_1.3.2-2 r-cran-yaml_2.2.1-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biovizbase-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-1 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0hXG9BVW/trustedkeys.kbx': General error
gpgv: Signature made Tue Sep 14 10:35:39 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-biovizbase_1.40.0-2.dsc
dpkg-source: info: extracting r-bioc-biovizbase in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biovizbase_1.40.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biovizbase_1.40.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-bc9f3f79-5548-4c73-998d-91c413b46f37
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biovizbase
dpkg-buildpackage: info: source version 1.40.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-biovizbase/ -a -O--buildsystem=R
I: R Package: biovizBase Version: 1.40.0
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 14 Sep 2021 12:25:47 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 14 Sep 2021 12:25:47 +0200'"
* installing *source* package 'biovizBase' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bin_offsets.c -o bin_offsets.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o biovizBase.so R_init_biovizBase.o bin_offsets.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library/00LOCK-r-bioc-biovizbase-1.40.0/00new/biovizBase/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biovizBase)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
W: Ignoring specified R dependency: R (>= 3.5.0)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
W: Cannot find a debian package for Suggests:EnsDb.Hsapiens.v75
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-scales for Imports:scales
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcolorbrewer for Imports:RColorBrewer
I: Using r-cran-dichromat for Imports:dichromat
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.23.19)
I: Using r-bioc-iranges for Imports:IRanges (>= 1.99.28)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.5.14)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.23.21)
I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.11)
I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.17.28)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.16)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.21.19)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi
I: Using r-bioc-variantannotation for Imports:VariantAnnotation (>= 1.11.4)
I: Using r-bioc-ensembldb for Imports:ensembldb (>= 1.99.13)
I: Using r-bioc-annotationfilter for Imports:AnnotationFilter (>= 0.99.8)
I: Using r-cran-rlang for Imports:rlang
I: BioConductor API version: r-api-bioc-3.13
I: Use r-bioc-biovizbase as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biovizbase-dbgsym' in '../r-bioc-biovizbase-dbgsym_1.40.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-biovizbase' in '../r-bioc-biovizbase_1.40.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-biovizbase_1.40.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-01T03:20:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biovizbase_1.40.0-2_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Tue, 14 Sep 2021 12:25:47 +0200
Source: r-bioc-biovizbase
Binary: r-bioc-biovizbase r-bioc-biovizbase-dbgsym
Architecture: armhf
Version: 1.40.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biovizbase - GNU R basic graphic utilities for visualization of genomic data
Changes:
r-bioc-biovizbase (1.40.0-2) unstable; urgency=medium
.
* Disable reprotest
* Do not run autodep8 since it needs unpackaged data
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Files:
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92e37b6e1997e310d8b69eb68d3698f8 14228 gnu-r optional r-bioc-biovizbase_1.40.0-2_armhf.buildinfo
1399d4ed8df9854f6696866ab752342a 2740192 gnu-r optional r-bioc-biovizbase_1.40.0-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biovizbase-dbgsym_1.40.0-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 5868 bytes: control archive=540 bytes.
405 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biovizbase-dbgsym
Source: r-bioc-biovizbase
Version: 1.40.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 18
Depends: r-bioc-biovizbase (= 1.40.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-biovizbase
Build-Ids: 70130765e3e1b28feb2f57875e7a3278600fa92b
drwxr-xr-x root/root 0 2021-09-14 10:25 ./
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 8124 2021-09-14 10:25 ./usr/lib/debug/.build-id/70/130765e3e1b28feb2f57875e7a3278600fa92b.debug
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/share/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-14 10:25 ./usr/share/doc/r-bioc-biovizbase-dbgsym -> r-bioc-biovizbase
r-bioc-biovizbase_1.40.0-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 2740192 bytes: control archive=2320 bytes.
1261 bytes, 15 lines control
4273 bytes, 49 lines md5sums
Package: r-bioc-biovizbase
Version: 1.40.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3115
Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-cran-scales, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-dichromat, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.23.19), r-bioc-iranges (>= 1.99.28), r-bioc-genomeinfodb (>= 1.5.14), r-bioc-genomicranges (>= 1.23.21), r-bioc-summarizedexperiment, r-bioc-biostrings (>= 2.33.11), r-bioc-rsamtools (>= 1.17.28), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomicfeatures (>= 1.21.19), r-bioc-annotationdbi, r-bioc-variantannotation (>= 1.11.4), r-bioc-ensembldb (>= 1.99.13), r-bioc-annotationfilter (>= 0.99.8), r-cran-rlang, libc6 (>= 2.4)
Suggests: r-bioc-bsgenome, r-bioc-rtracklayer, r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/biovizBase/
Description: GNU R basic graphic utilities for visualization of genomic data
The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for
various high-level packages for biological data visualization. This
saves development effort and encourages consistency.
drwxr-xr-x root/root 0 2021-09-14 10:25 ./
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drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/
-rw-r--r-- root/root 2284 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/DESCRIPTION
-rw-r--r-- root/root 2439 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/INDEX
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/
-rw-r--r-- root/root 2160 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/Rd.rds
-rw-r--r-- root/root 297 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/data.rds
-rw-r--r-- root/root 132 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/features.rds
-rw-r--r-- root/root 2032 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/hsearch.rds
-rw-r--r-- root/root 1286 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/links.rds
-rw-r--r-- root/root 1435 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/nsInfo.rds
-rw-r--r-- root/root 1926 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/Meta/package.rds
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-rw-r--r-- root/root 3675 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/NAMESPACE
-rw-r--r-- root/root 606 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/NEWS
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/R/
-rw-r--r-- root/root 1058 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/R/biovizBase
-rw-r--r-- root/root 199417 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/R/biovizBase.rdb
-rw-r--r-- root/root 2328 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/R/biovizBase.rdx
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/data/
-rw-r--r-- root/root 589035 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/data/Rdata.rdb
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-rw-r--r-- root/root 321 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/data/Rdata.rdx
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/doc/
-rw-r--r-- root/root 1468 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/doc/index.html
-rw-r--r-- root/root 7619 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/doc/intro.R
-rw-r--r-- root/root 35822 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/doc/intro.Rnw
-rw-r--r-- root/root 230370 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/doc/intro.pdf
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/examples/
-rw-r--r-- root/root 729 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/examples/color.R
-rw-r--r-- root/root 6500 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/examples/data-gen.R
-rw-r--r-- root/root 5250 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/examples/test.R
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/
-rw-r--r-- root/root 7862 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz
-rw-r--r-- root/root 199 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz.tbi
-rw-r--r-- root/root 334181 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam
-rw-r--r-- root/root 3776 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam.bai
-rw-r--r-- root/root 120757 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/crc-rearrangment.csv
-rw-r--r-- root/root 5538 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/crc1-missense.csv
-rw-r--r-- root/root 124509 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/plink.assoc.sub.txt
-rw-r--r-- root/root 1261753 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/wg-brca1.sorted.bam
-rw-r--r-- root/root 20832 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/extdata/wg-brca1.sorted.bam.bai
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/help/
-rw-r--r-- root/root 3253 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/help/AnIndex
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-rw-r--r-- root/root 5512 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/libs/biovizBase.so
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/unitTests/
-rw-r--r-- root/root 1087 2021-09-14 10:25 ./usr/lib/R/site-library/biovizBase/unitTests/test_ensdb.R
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-rw-r--r-- root/root 1662 2021-09-14 10:25 ./usr/share/doc/r-bioc-biovizbase/changelog.Debian.gz
-rw-r--r-- root/root 5338 2021-09-14 10:25 ./usr/share/doc/r-bioc-biovizbase/copyright
drwxr-xr-x root/root 0 2021-09-14 10:25 ./usr/share/doc/r-bioc-biovizbase/examples/
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-rw-r--r-- root/root 135 2021-09-14 10:25 ./usr/share/lintian/overrides/r-bioc-biovizbase
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 9004
Build-Time: 164
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 934
Job: r-bioc-biovizbase_1.40.0-2
Machine Architecture: armhf
Package: r-bioc-biovizbase
Package-Time: 1121
Source-Version: 1.40.0-2
Space: 9004
Status: successful
Version: 1.40.0-2
--------------------------------------------------------------------------------
Finished at 2021-10-01T03:20:20Z
Build needed 00:18:41, 9004k disk space