r-bioc-biovizbase →
1.26.0-1 →
armhf → 2017-11-15 04:12:45
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-bioc-biovizbase 1.26.0-1 (armhf) Wed, 15 Nov 2017 03:40:12 +0000 |
+==============================================================================+
Package: r-bioc-biovizbase
Version: 1.26.0-1
Source Version: 1.26.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-34bdeb26-2167-4736-8ed2-3146e46cbb79' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biovizbase' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/r-bioc-biovizbase.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/r-bioc-biovizbase.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2439 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-biovizbase 1.26.0-1 (dsc) [2333 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-biovizbase 1.26.0-1 (tar) [2432 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-biovizbase 1.26.0-1 (diff) [5136 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-biovizbase-uVMdAv/r-bioc-biovizbase-1.26.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biovizbase-uVMdAv' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ddlCXn/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ddlCXn/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ddlCXn/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Sources [349 B]
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Reading package lists...
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13092 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-r, r-cran-dichromat, r-cran-foreign, r-cran-hmisc, r-cran-nnet, r-cran-rcolorbrewer, r-cran-scales, r-bioc-annotationfilter, r-bioc-ensembldb (>= 1.99.13), r-bioc-variantannotation (>= 1.16.0)
Filtered Build-Depends: debhelper (>= 10), dh-r, r-cran-dichromat, r-cran-foreign, r-cran-hmisc, r-cran-nnet, r-cran-rcolorbrewer, r-cran-scales, r-bioc-annotationfilter, r-bioc-ensembldb (>= 1.99.13), r-bioc-variantannotation (>= 1.16.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biovizbase-dummy' in '/<<BUILDDIR>>/resolver-ddlCXn/apt_archive/sbuild-build-depends-r-bioc-biovizbase-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biovizbase-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ Packages [668 B]
Fetched 2589 B in 0s (3729 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-biovizbase build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-mathjax gettext gettext-base gfortran gfortran-7 groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu57 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json
libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libmariadb2 libncurses5-dev libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo-dev libtk8.6 libtool libuv1 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js nodejs openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-protgenerics
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate
r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table
r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-foreign
r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable
r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr
r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mime r-cran-munsell r-cran-nnet r-cran-openssl r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-progress r-cran-r6
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rmysql r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny
r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
r-cran-tibble r-cran-viridis r-cran-viridislite r-cran-xml r-cran-xtable
r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc
libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc
liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc
less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
r-cran-runit r-bioc-graph r-cran-testthat r-cran-foreach r-cran-batchjobs
r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-shortread
r-cran-codetools r-bioc-annotate r-bioc-affy r-bioc-genefilter r-bioc-gviz
r-bioc-deseq2 r-bioc-edger r-bioc-limma r-bioc-snpstats r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-reshape
r-cran-hexbin r-cran-fastmatch r-cran-nlme r-cran-xts r-cran-gdata
r-cran-caret r-cran-zoo r-cran-mapproj r-cran-maps r-cran-maptools
r-cran-mgcv r-cran-multcomp r-cran-quantreg r-cran-testit r-cran-png
r-cran-xml2 r-cran-sp r-cran-formatr r-cran-rgl r-cran-tikzdevice
r-cran-getopt r-cran-abind r-cran-iterators r-cran-inline r-cran-dbitest
r-cran-hms r-cran-cairo r-cran-rsprng r-cran-rlecuyer r-cran-dplyr
r-cran-withr r-cran-lsmeans r-cran-spdep
Recommended packages:
curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-mathjax gettext gettext-base gfortran gfortran-7 groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu57 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json
libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libmariadb2 libncurses5-dev libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo-dev libtk8.6 libtool libuv1 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
node-highlight.js nodejs openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-protgenerics
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate
r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table
r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-foreign
r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable
r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr
r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mime r-cran-munsell r-cran-nnet r-cran-openssl r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-progress r-cran-r6
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rlang
r-cran-rmysql r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny
r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
r-cran-tibble r-cran-viridis r-cran-viridislite r-cran-xml r-cran-xtable
r-cran-yaml sbuild-build-depends-r-bioc-biovizbase-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 239 newly installed, 0 to remove and 25 not upgraded.
Need to get 203 MB of archives.
After this operation, 492 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ddlCXn/apt_archive ./ sbuild-build-depends-r-bioc-biovizbase-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-3 [95.9 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-2 [73.6 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-0.1 [401 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.3-0.2 [435 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
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Get:18 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
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Get:20 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
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Get:23 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-metadata all 12-1 [7236 B]
Get:24 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-tablesorter all 1:2.29.0+dfsg1-1 [174 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB]
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Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
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Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf openssl armhf 1.1.0g-2 [707 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf ca-certificates all 20170717 [178 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.10.5 [978 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-1 [72.7 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-12 [191 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.8-2 [557 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.27.0-1 [71.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-4 [42.4 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.56.1-1 [276 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-1 [168 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-1 [50.0 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.12-1 [179 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-6 [71.5 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.6.2-1 [683 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.12-1 [72.0 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.12-1 [61.2 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.7+dfsg-1 [869 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-6 [219 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-1+b2 [49.3 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.7-1 [660 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.2-2 [22.9 MB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.2.0-12 [231 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.2.0-12 [5443 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:101 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.0+20170902-1 [66.6 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.0+20170902-1 [151 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2 [178 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-4 [235 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-4 [227 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-4 [149 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-4 [565 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 57.1-8 [156 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 57.1-8 [15.8 MB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.2-2 [4488 B]
Get:122 http://172.17.0.1/private buster-staging/main armhf dh-r all 20161219 [8794 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf fonts-font-awesome all 4.7.0~dfsg-3 [514 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.0-2 [960 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libjs-bootstrap all 3.3.7+dfsg-2 [274 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libjs-es5-shim all 4.5.9-1 [41.3 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4 [300 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.16+dfsg-1 [135 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libjs-json all 0~20160510-1 [24.2 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libmariadb2 armhf 2.3.3-1 [111 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.11.0-2 [78.9 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.2-1 [60.3 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.2-1 [12.0 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf nodejs armhf 4.8.4~dfsg-1 [2905 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf node-highlight.js all 9.12.0+dfsg1-4 [237 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.24.0-1 [567 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.38.0-1 [2024 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.16.0-1 [1163 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.12.0-1 [1466 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-cran-dbi armhf 0.7-1 [664 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-cran-bit armhf 1.1-12-1 [214 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-cran-bit64 armhf 0.9-7-1 [433 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-cran-rlang armhf 0.1.2-1 [435 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-1.1 [19.0 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 0.12.13-1 [3261 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-cran-tibble armhf 1.3.4-1 [167 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-cran-blob all 1.1.0-2 [15.3 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-cran-digest armhf 0.6.12-1+b1 [109 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-cran-memoise all 1.1.0-1 [31.8 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.1-2 [17.0 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-cran-rsqlite armhf 2.0-2 [700 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationdbi all 1.40.0-1 [4303 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.8-3 [616 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 0.99.0-2 [16.2 MB]
Get:157 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.14.0-1 [3529 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.18.0-1 [367 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.30.0-1 [1575 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf r-cran-lazyeval armhf 0.2.0-1+b1 [111 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationfilter all 1.2.0-1 [414 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocinstaller all 1.26.1-2 [60.0 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf r-cran-curl armhf 3.0-2 [365 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf r-cran-httpuv armhf 1.3.5-1 [228 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf r-cran-mime armhf 0.5-1+b1 [25.8 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.5-1 [589 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-2-2 [692 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-1 [124 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf r-cran-r6 all 2.2.2-2 [239 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf r-cran-sourcetools armhf 0.1.6-1 [41.0 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf r-cran-shiny all 1.0.5+dfsg-2 [1121 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf r-bioc-interactivedisplaybase all 1.16.0-1 [34.1 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf r-cran-openssl armhf 0.9.7-1 [550 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf r-cran-httr all 1.3.1-1 [274 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf r-cran-yaml armhf 2.1.14-1+b1 [68.4 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf r-bioc-annotationhub all 2.10.1-1 [597 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2-1 [86.3 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.0-3 [15.6 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-2 [93.8 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.2-1.1 [65.4 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.12.0-1 [765 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.9-1 [1667 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf r-cran-magrittr all 1.5-4 [152 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-1 [44.1 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf r-cran-prettyunits all 1.0.2-2 [26.6 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf r-cran-progress all 1.1.2-2 [41.3 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf r-cran-stringi armhf 1.1.5-1 [566 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf r-cran-stringr all 1.2.0-1 [132 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf r-bioc-biomart all 2.34.0-1 [384 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf r-bioc-biostrings armhf 2.46.0-1 [13.6 MB]
Get:191 http://172.17.0.1/private buster-staging/main armhf r-bioc-rsamtools armhf 1.30.0-1 [3278 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.52.2-1 [552 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.4.1-1 [615 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-35-1+b1 [723 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-11-1 [2330 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.8.0-1 [1581 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicalignments armhf 1.12.2-2 [1525 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf r-bioc-rtracklayer armhf 1.36.6-1 [1848 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf r-bioc-bsgenome all 1.46.0-1 [6533 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf r-cran-rmysql armhf 0.10.13-1 [177 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicfeatures all 1.30.0+dfsg-1 [982 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf r-bioc-protgenerics all 1.10.0-1 [29.4 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf r-bioc-ensembldb all 2.2.0-1 [1865 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf r-bioc-variantannotation armhf 1.22.3-1 [2362 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf r-cran-acepack armhf 1.4.1-2 [50.6 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf r-cran-backports armhf 1.1.1-1 [41.4 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf r-cran-base64enc armhf 0.1-3-1+b1 [23.6 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf r-cran-checkmate armhf 1.8.4-1 [503 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf r-cran-chron armhf 2.3-51-1 [107 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf r-cran-cluster armhf 2.0.6-2 [513 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf r-cran-colorspace armhf 1.3-2-1+b1 [397 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.0-2 [5603 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf r-cran-data.table armhf 1.10.4-2-1 [1113 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf r-cran-dichromat all 2.0.0-3 [146 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf r-cran-evaluate all 0.10.1-1 [52.3 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf r-cran-foreign armhf 0.8.69-1 [236 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf r-cran-formula all 1.2-2-1.1 [163 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf r-cran-gtable all 0.2.0-2 [66.1 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-47-1 [1098 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf r-cran-plyr armhf 1.8.4-1+b1 [734 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf r-cran-reshape2 armhf 1.4.2-1+b1 [92.2 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-1.1 [26.3 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf r-cran-munsell all 0.4.3-2 [128 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf r-cran-labeling all 0.3-2 [40.6 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf r-cran-viridislite all 0.2.0-1.1 [56.1 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf r-cran-scales armhf 0.5.0-1 [190 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf r-cran-ggplot2 all 2.2.1-3 [2681 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf r-cran-gridextra all 2.3-1.1 [999 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf r-cran-highr all 0.6-2 [30.4 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf r-cran-survival armhf 2.41-3-2 [5142 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf r-cran-rpart armhf 4.1-11-1 [882 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b1 [2059 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf r-cran-viridis all 0.4.0-1.1 [1719 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf r-cran-markdown armhf 0.8-1 [99.9 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf r-cran-knitr armhf 1.17-1 [806 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf r-cran-htmlwidgets armhf 0.9-1 [383 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf r-cran-htmltable all 1.9-1.1 [199 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf r-cran-hmisc armhf 4.0-3-1 [1748 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf r-cran-nnet armhf 7.3-12-2 [109 kB]
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Setting up r-cran-rsqlite (2.0-2) ...
Setting up r-cran-httr (1.3.1-1) ...
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Setting up r-bioc-interactivedisplaybase (1.16.0-1) ...
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Setting up r-cran-ggplot2 (2.2.1-3) ...
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Setting up r-bioc-genomicranges (1.30.0-1) ...
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Setting up r-bioc-biomart (2.34.0-1) ...
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Setting up r-bioc-annotationhub (2.10.1-1) ...
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Setting up r-bioc-genomicalignments (1.12.2-2) ...
Setting up r-cran-hmisc (4.0-3-1) ...
Setting up r-bioc-rtracklayer (1.36.6-1) ...
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Setting up r-bioc-bsgenome (1.46.0-1) ...
Setting up r-bioc-ensembldb (2.2.0-1) ...
Setting up r-bioc-variantannotation (1.22.3-1) ...
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Setting up debhelper (10.10.5) ...
Setting up dh-r (20161219) ...
Setting up sbuild-build-depends-r-bioc-biovizbase-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-17) ...
Processing triggers for systemd (235-2) ...
Processing triggers for ca-certificates (20170717) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-6+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-12 gcc-7_7.2.0-12 libc6-dev_2.24-17 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-6+rpi1 binutils-arm-linux-gnueabihf_2.29.1-6+rpi1 binutils-common_2.29.1-6+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-12 dash_0.5.8-2.5 dctrl-tools_2.24-2 debconf_1.5.64 debhelper_10.10.5 debianutils_4.8.2 dh-autoreconf_14 dh-r_20161219 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.1-5 dmsetup_2:1.02.142-1 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-1 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.3-0.2 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 fonts-font-awesome_4.7.0~dfsg-3 fonts-mathjax_2.7.0-2 g++_4:7.2.0-1d1 g++-7_7.2.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6-base_6.4.0-6 gcc-7_7.2.0-12 gcc-7-base_7.2.0-12 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.2.0-12 gnupg_2.2.1-5 gnupg-l10n_2.2.1-5 gnupg-utils_2.2.1-5 gpg_2.2.1-5 gpg-agent_2.2.1-5 gpg-wks-client_2.2.1-5 gpg-wks-server_2.2.1-5 gpgconf_2.2.1-5 gpgsm_2.2.1-5 gpgv_2.2.1-5 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-8 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.1-2 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12 libassuan0_2.4.3-3 libatomic1_7.2.0-12 libattr1_1:2.4.47-2 libaudit-common_1:2.8.1-1 libaudit1_1:2.8.1-1 libbinutils_2.29.1-6+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.30.2-0.1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.24-17 libc-dev-bin_2.24-17 libc6_2.24-17 libc6-dev_2.24-17 libcairo2_1.15.8-2 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12 libcilkrts5_7.2.0-12 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libcurl3_7.56.1-1 libdatrie1_0.2.10-5 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.22-1 libdebconfclient0_0.232 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.19.0.4 libdrm-common_2.4.84-2+rpi1 libdrm2_2.4.84-2+rpi1 libexpat1_2.2.3-2 libfakeroot_1.22-1 libfdisk1_2.30.2-0.1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.3-0.2 libfreetype6_2.8.1-0.1 libgcc-7-dev_7.2.0-12 libgcc1_1:7.2.0-12 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgfortran-7-dev_7.2.0-12 libgfortran4_7.2.0-12 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-12 libgpg-error0_1.27-4 libgraphite2-3_1.3.10-6 libgssapi-krb5-2_1.15.2-2 libharfbuzz0b_1.6.2-1 libhogweed4_3.3-2 libice6_2:1.0.9-2 libicu-dev_57.1-8 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2 libjpeg62-turbo-dev_1:1.5.2-2 libjs-bootstrap_3.3.7+dfsg-2 libjs-es5-shim_4.5.9-1 libjs-highlight.js_9.12.0+dfsg1-4 libjs-jquery_3.2.1-1 libjs-jquery-datatables_1.10.16+dfsg-1 libjs-jquery-metadata_12-1 libjs-jquery-tablesorter_1:2.29.0+dfsg1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-json_0~20160510-1 libjs-mathjax_2.7.0-2 libjs-twitter-bootstrap_2.0.2+dfsg-10 libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-4 liblapack3_3.7.1-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblocale-gettext-perl_1.07-3+b2 liblz4-1_0.0~r131-2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmariadb2_2.3.3-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncurses5-dev_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnghttp2-14_1.27.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpango-1.0-0_1.40.12-1 libpangocairo-1.0-0_1.40.12-1 libpangoft2-1.0-0_1.40.12-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-4 libpcre3_2:8.39-4 libpcre3-dev_2:8.39-4 libpcre32-3_2:8.39-4 libpcrecpp0v5_2:8.39-4 libperl5.26_5.26.1-2 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libplymouth4_0.9.3-1 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpsl5_0.18.0-4 libreadline-dev_7.0-3 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsm6_2:1.2.2-1+b3 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2m-3 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 libsystemd0_235-2 libtasn1-6_4.12-2.1 libtcl8.6_8.6.7+dfsg-1 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.27-1 libthai0_0.1.27-1 libtiff5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20170902-1 libtinfo5_6.0+20170902-1 libtk8.6_8.6.7-1 libtool_2.4.6-2 libubsan0_7.2.0-12 libudev1_235-2 libunistring2_0.9.7-2 libuuid1_2.30.2-0.1 libuv1_1.11.0-2 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-1+b2 libxml2_2.9.4+dfsg1-5 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 littler_0.3.2-1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.30.2-0.1 mountall_2.54 multiarch-support_2.24-17 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 node-highlight.js_9.12.0+dfsg1-4 nodejs_4.8.4~dfsg-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-2 perl-base_5.26.1-2 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 pkg-config_0.29-4 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 r-base-core_3.4.2-2 r-base-dev_3.4.2-2 r-bioc-annotationdbi_1.40.0-1 r-bioc-annotationfilter_1.2.0-1 r-bioc-annotationhub_2.10.1-1 r-bioc-biobase_2.38.0-1 r-bioc-biocgenerics_0.24.0-1 r-bioc-biocinstaller_1.26.1-2 r-bioc-biocparallel_1.12.0-1 r-bioc-biomart_2.34.0-1 r-bioc-biostrings_2.46.0-1 r-bioc-bsgenome_1.46.0-1 r-bioc-delayedarray_0.4.1-1 r-bioc-ensembldb_2.2.0-1 r-bioc-genomeinfodb_1.14.0-1 r-bioc-genomeinfodbdata_0.99.0-2 r-bioc-genomicalignments_1.12.2-2 r-bioc-genomicfeatures_1.30.0+dfsg-1 r-bioc-genomicranges_1.30.0-1 r-bioc-interactivedisplaybase_1.16.0-1 r-bioc-iranges_2.12.0-1 r-bioc-protgenerics_1.10.0-1 r-bioc-rsamtools_1.30.0-1 r-bioc-rtracklayer_1.36.6-1 r-bioc-s4vectors_0.16.0-1 r-bioc-summarizedexperiment_1.8.0-1 r-bioc-variantannotation_1.22.3-1 r-bioc-xvector_0.18.0-1 r-cran-acepack_1.4.1-2 r-cran-assertthat_0.2.0-1 r-cran-backports_1.1.1-1 r-cran-base64enc_0.1-3-1+b1 r-cran-bit_1.1-12-1 r-cran-bit64_0.9-7-1 r-cran-bitops_1.0-6-1 r-cran-blob_1.1.0-2 r-cran-checkmate_1.8.4-1 r-cran-chron_2.3-51-1 r-cran-cluster_2.0.6-2 r-cran-colorspace_1.3-2-1+b1 r-cran-curl_3.0-2 r-cran-data.table_1.10.4-2-1 r-cran-dbi_0.7-1 r-cran-dichromat_2.0.0-3 r-cran-digest_0.6.12-1+b1 r-cran-evaluate_0.10.1-1 r-cran-foreign_0.8.69-1 r-cran-formula_1.2-2-1.1 r-cran-futile.logger_1.4.3-2 r-cran-futile.options_1.0.0-3 r-cran-ggplot2_2.2.1-3 r-cran-gridextra_2.3-1.1 r-cran-gtable_0.2.0-2 r-cran-highr_0.6-2 r-cran-hmisc_4.0-3-1 r-cran-htmltable_1.9-1.1 r-cran-htmltools_0.3.6-1 r-cran-htmlwidgets_0.9-1 r-cran-httpuv_1.3.5-1 r-cran-httr_1.3.1-1 r-cran-jsonlite_1.5-1 r-cran-knitr_1.17-1 r-cran-labeling_0.3-2 r-cran-lambda.r_1.2-1 r-cran-lattice_0.20-35-1+b1 r-cran-latticeextra_0.6-28-2+b1 r-cran-lazyeval_0.2.0-1+b1 r-cran-littler_0.3.2-1 r-cran-magrittr_1.5-4 r-cran-markdown_0.8-1 r-cran-mass_7.3-47-1 r-cran-matrix_1.2-11-1 r-cran-matrixstats_0.52.2-1 r-cran-memoise_1.1.0-1 r-cran-mime_0.5-1+b1 r-cran-munsell_0.4.3-2 r-cran-nnet_7.3-12-2 r-cran-openssl_0.9.7-1 r-cran-pkgconfig_2.0.1-2 r-cran-pkgkitten_0.1.4-1.1 r-cran-plyr_1.8.4-1+b1 r-cran-prettyunits_1.0.2-2 r-cran-progress_1.1.2-2 r-cran-r6_2.2.2-2 r-cran-rcolorbrewer_1.1-2-1.1 r-cran-rcpp_0.12.13-1 r-cran-rcurl_1.95-4.8-3 r-cran-reshape2_1.4.2-1+b1 r-cran-rlang_0.1.2-1 r-cran-rmysql_0.10.13-1 r-cran-rpart_4.1-11-1 r-cran-rsqlite_2.0-2 r-cran-scales_0.5.0-1 r-cran-shiny_1.0.5+dfsg-2 r-cran-snow_1:0.4.2-1.1 r-cran-sourcetools_0.1.6-1 r-cran-stringi_1.1.5-1 r-cran-stringr_1.2.0-1 r-cran-survival_2.41-3-2 r-cran-tibble_1.3.4-1 r-cran-viridis_0.4.0-1.1 r-cran-viridislite_0.2.0-1.1 r-cran-xml_3.98-1.9-1 r-cran-xtable_1:1.8-2-2 r-cran-yaml_2.1.14-1+b1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biovizbase-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 ucf_3.0036 udev_235-2 unzip_6.0-21 util-linux_2.30.2-0.1 x11-common_1:7.7+19 xauth_1:1.0.9-1 xdg-utils_1.1.2-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 9 10:01:15 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-biovizbase_1.26.0-1.dsc
dpkg-source: info: extracting r-bioc-biovizbase in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biovizbase_1.26.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biovizbase_1.26.0-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-34bdeb26-2167-4736-8ed2-3146e46cbb79
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biovizbase
dpkg-buildpackage: info: source version 1.26.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-biovizbase-1.26.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: biovizBase Version: 1.26.0
I: Building using R version 3.4.2-2
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Thu, 09 Nov 2017 10:57:05 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 09 Nov 2017 10:57:05 +0100'"
* installing *source* package 'biovizBase' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-bsBMFt/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-bsBMFt/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bin_offsets.c -o bin_offsets.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o biovizBase.so R_init_biovizBase.o bin_offsets.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: multiple methods tables found for 'rglist'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: multiple methods tables found for 'rglist'
* DONE (biovizBase)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
W: Ignoring specified R dependency: R (>= 2.10)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
W: Cannot find a debian package for Suggests:EnsDb.Hsapiens.v75
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-scales for Imports:scales
I: Using r-cran-hmisc for Imports:Hmisc
I: Using r-cran-rcolorbrewer for Imports:RColorBrewer
I: Using r-cran-dichromat for Imports:dichromat
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-bioc-iranges for Imports:IRanges (>= 1.99.28)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.5.14)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.23.21)
I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.11)
I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.17.28)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.16)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.21.19)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi
I: Using r-bioc-variantannotation for Imports:VariantAnnotation (>= 1.11.4)
I: Using r-bioc-ensembldb for Imports:ensembldb (>= 1.99.13)
I: Using r-bioc-annotationfilter for Imports:AnnotationFilter (>= 0.99.8)
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dpkg-deb: building package 'r-bioc-biovizbase-dbgsym' in '../r-bioc-biovizbase-dbgsym_1.26.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biovizbase' in '../r-bioc-biovizbase_1.26.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-biovizbase-1.26.0
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2017-11-15T04:11:15Z
Finished
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I: Built successfully
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| Changes |
+------------------------------------------------------------------------------+
r-bioc-biovizbase_1.26.0-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 09 Nov 2017 10:57:05 +0100
Source: r-bioc-biovizbase
Binary: r-bioc-biovizbase
Architecture: armhf
Version: 1.26.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biovizbase - GNU R basic graphic utilities for visualization of genomic data
Changes:
r-bioc-biovizbase (1.26.0-1) unstable; urgency=medium
.
* New upstream version
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r-bioc-biovizbase-dbgsym_1.26.0-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 7460 bytes: control archive=544 bytes.
411 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biovizbase-dbgsym
Source: r-bioc-biovizbase
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Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 20
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Section: debug
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lrwxrwxrwx root/root 0 2017-11-09 09:57 ./usr/share/doc/r-bioc-biovizbase-dbgsym -> r-bioc-biovizbase
r-bioc-biovizbase_1.26.0-1_armhf.deb
------------------------------------
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1235 bytes, 15 lines control
4818 bytes, 55 lines md5sums
Package: r-bioc-biovizbase
Version: 1.26.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2859
Depends: r-base-core (>= 3.4.2-2), r-api-3.4, r-cran-scales, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-dichromat, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.28), r-bioc-genomeinfodb (>= 1.5.14), r-bioc-genomicranges (>= 1.23.21), r-bioc-summarizedexperiment, r-bioc-biostrings (>= 2.33.11), r-bioc-rsamtools (>= 1.17.28), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomicfeatures (>= 1.21.19), r-bioc-annotationdbi, r-bioc-variantannotation (>= 1.11.4), r-bioc-ensembldb (>= 1.99.13), r-bioc-annotationfilter (>= 0.99.8), libc6 (>= 2.4)
Suggests: r-bioc-bsgenome, r-bioc-rtracklayer, r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/biovizBase/
Description: GNU R basic graphic utilities for visualization of genomic data
The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for
various high-level packages for biological data visualization. This
saves development effort and encourages consistency.
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 8580
Build-Time: 232
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1583
Job: r-bioc-biovizbase_1.26.0-1
Machine Architecture: armhf
Package: r-bioc-biovizbase
Package-Time: 1863
Source-Version: 1.26.0-1
Space: 8580
Status: successful
Version: 1.26.0-1
--------------------------------------------------------------------------------
Finished at 2017-11-15T04:11:15Z
Build needed 00:31:03, 8580k disc space