r-bioc-biovizbase →
1.10.7-1 →
armhf → 2014-01-09 07:21:40
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-biovizbase 1.10.7-1 (armhf) 09 Jan 2014 07:09 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biovizbase
Version: 1.10.7-1
Source Version: 1.10.7-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-biovizbase-HjVFGL/r-bioc-biovizbase-1.10.7' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-biovizbase-HjVFGL' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-8c657757-aa62-4e07-a036-aa47095d20ca' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7171 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8293 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biovizbase' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biovizbase/trunk/
Need to get 1042 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-bioc-biovizbase 1.10.7-1 (dsc) [1640 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-bioc-biovizbase 1.10.7-1 (tar) [1035 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-bioc-biovizbase 1.10.7-1 (diff) [4592 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-auWuL4/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 13 not upgraded.
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11446 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-cran-dichromat, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-scales, r-bioc-biobase, r-bioc-iranges, r-bioc-biostrings, r-bioc-genomicranges, r-bioc-genomicfeatures
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-cran-dichromat, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-scales, r-bioc-biobase, r-bioc-iranges, r-bioc-biostrings, r-bioc-genomicranges, r-bioc-genomicfeatures
dpkg-deb: building package `sbuild-build-depends-r-bioc-biovizbase-dummy' in `/«BUILDDIR»/resolver-5OrF3n/apt_archive/sbuild-build-depends-r-bioc-biovizbase-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biovizbase build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base
intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3-nss libdatrie1 libdrm2 libegl1-mesa libexpat1 libffi6
libfontconfig1 libfreetype6 libgbm1 libgcrypt11 libgfortran-4.8-dev
libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26
libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libidn11
libjbig0 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libllvm3.3 libmagic1
libncurses5-dev libnspr4 libnss3 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libsasl2-modules-db
libsm6 libsqlite3-0 libssh2-1 libtasn1-3 libthai-data libthai0 libtiff5
libtinfo-dev libunistring0 libwayland-client0 libwayland-server0 libx11-6
libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-glx0 libxcb-render0
libxcb-shape0 libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6
libxext6 libxfixes3 libxft2 libxml2 libxrender1 libxss1 libxt6 libxxf86vm1
man-db po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-xvector r-cran-bitops r-cran-chron r-cran-cluster
r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-formula r-cran-hmisc
r-cran-labeling r-cran-lattice r-cran-munsell r-cran-plyr
r-cran-rcolorbrewer r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales
r-cran-stringr r-cran-survival r-cran-xml tcl8.5 tk8.5 ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc
gfortran-doc gfortran-4.8-doc libgfortran3-dbg groff rng-tools krb5-doc
krb5-user ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl
r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html r-bioc-pasillabamsubset r-bioc-shortread r-cran-rmysql
r-cran-ggplot2 r-cran-runit tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
ca-certificates libegl1-mesa-drivers libgl1-mesa-dri libglib2.0-data
shared-mime-info krb5-locales libsasl2-modules xml-core
libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base
intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3-nss libdatrie1 libdrm2 libegl1-mesa libexpat1 libffi6
libfontconfig1 libfreetype6 libgbm1 libgcrypt11 libgfortran-4.8-dev
libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26
libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libidn11
libjbig0 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libllvm3.3 libmagic1
libncurses5-dev libnspr4 libnss3 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libsasl2-modules-db
libsm6 libsqlite3-0 libssh2-1 libtasn1-3 libthai-data libthai0 libtiff5
libtinfo-dev libunistring0 libwayland-client0 libwayland-server0 libx11-6
libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-glx0 libxcb-render0
libxcb-shape0 libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6
libxext6 libxfixes3 libxft2 libxml2 libxrender1 libxss1 libxt6 libxxf86vm1
man-db po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-xvector r-cran-bitops r-cran-chron r-cran-cluster
r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-formula r-cran-hmisc
r-cran-labeling r-cran-lattice r-cran-munsell r-cran-plyr
r-cran-rcolorbrewer r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales
r-cran-stringr r-cran-survival r-cran-xml
sbuild-build-depends-r-bioc-biovizbase-dummy tcl8.5 tk8.5 ucf unzip
x11-common xdg-utils zip zlib1g-dev
0 upgraded, 150 newly installed, 0 to remove and 13 not upgraded.
Need to get 97.1 MB/97.1 MB of archives.
After this operation, 193 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-1 [24.4 kB]
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Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-2 [29.5 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.12-0.2 [78.9 kB]
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Get:8 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.1-3 [154 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libtasn1-3 armhf 2.14-3 [64.1 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-8 [596 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.6-1 [7900 B]
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Get:15 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.11.3+dfsg-3+nmu1 [338 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.11.3+dfsg-3+nmu1 [145 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libidn11 armhf 1.28-1 [181 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libsasl2-modules-db armhf 2.1.25.dfsg1-17 [64.9 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libsasl2-2 armhf 2.1.25.dfsg1-17 [104 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libldap-2.4-2 armhf 2.4.31-1+nmu2+b1 [214 kB]
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Get:22 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.2-1 [423 kB]
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Get:24 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.50-1 [474 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 9.2.2-1 [63.2 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libllvm3.3 armhf 1:3.3-16 [5374 kB]
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Get:31 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3.1 [42.6 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.9.1-3.1 [12.4 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libgbm1 armhf 9.2.2-1 [418 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-1 [125 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-1 [867 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-1 [163 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.9.1-3.1 [17.4 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libxcb-shape0 armhf 1.9.1-3.1 [11.3 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libxcb-xfixes0 armhf 1.9.1-3.1 [14.0 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libegl1-mesa armhf 9.2.2-1 [74.6 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-5 [179 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.5.2-1 [397 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
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Get:57 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.16-2 [998 kB]
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Get:60 http://172.17.0.1/private/ jessie-staging/main libnspr4 armhf 2:4.10.2-1 [115 kB]
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Get:66 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.2-10 [225 kB]
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Get:84 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-2 [135 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main cdbs all 0.4.122 [81.4 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-2 [1829 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main libgfortran-4.8-dev armhf 4.8.2-10 [298 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main gfortran-4.8 armhf 4.8.2-10 [5705 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.8.2-1 [1138 B]
Get:97 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-7 [186 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-7 [201 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-5 [33.8 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main libjpeg8-dev armhf 8d-2 [238 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.5.0-2 [2416 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main liblapack-dev armhf 3.5.0-2 [2716 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20130608-1 [92.5 kB]
Get:104 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20130608-1 [201 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu2 [17.9 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-5 [258 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:111 http://172.17.0.1/private/ jessie-staging/main zip armhf 3.0-8 [326 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main unzip armhf 6.0-10 [192 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
Get:114 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.14-2 [1579 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.14-2 [1123 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main r-base-core armhf 3.0.2-1 [21.2 MB]
Get:117 http://172.17.0.1/private/ jessie-staging/main r-base-dev all 3.0.2-1 [3926 B]
Get:118 http://172.17.0.1/private/ jessie-staging/main r-cran-dbi armhf 0.2-7-1 [274 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main r-cran-rsqlite armhf 0.11.2-1 [324 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main r-bioc-biocgenerics all 0.8.0-1 [379 kB]
Get:121 http://172.17.0.1/private/ jessie-staging/main r-bioc-biobase armhf 2.20.0-1 [2202 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main r-bioc-iranges armhf 1.20.6-1 [1895 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main r-bioc-annotationdbi all 1.24.0-1 [4255 kB]
Get:124 http://172.17.0.1/private/ jessie-staging/main r-cran-xml armhf 3.98-1.1-1 [1800 kB]
Get:125 http://172.17.0.1/private/ jessie-staging/main r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:126 http://172.17.0.1/private/ jessie-staging/main r-cran-rcurl armhf 1.95-4.1-1 [532 kB]
Get:127 http://172.17.0.1/private/ jessie-staging/main r-bioc-biomart all 2.18.0-1 [338 kB]
Get:128 http://172.17.0.1/private/ jessie-staging/main r-bioc-xvector armhf 0.2.0-1 [333 kB]
Get:129 http://172.17.0.1/private/ jessie-staging/main r-bioc-biostrings armhf 2.30.1-1 [2293 kB]
Get:130 http://172.17.0.1/private/ jessie-staging/main r-bioc-genomicranges armhf 1.14.3-1 [2988 kB]
Get:131 http://172.17.0.1/private/ jessie-staging/main r-bioc-bsgenome armhf 1.30.0-1 [734 kB]
Get:132 http://172.17.0.1/private/ jessie-staging/main r-bioc-rsamtools armhf 1.14.2-1 [3560 kB]
Get:133 http://172.17.0.1/private/ jessie-staging/main r-bioc-rtracklayer armhf 1.22.0-1 [1727 kB]
Get:134 http://172.17.0.1/private/ jessie-staging/main r-bioc-genomicfeatures all 1.14.2-1 [934 kB]
Get:135 http://172.17.0.1/private/ jessie-staging/main r-cran-chron armhf 2.3-44-1 [102 kB]
Get:136 http://172.17.0.1/private/ jessie-staging/main r-cran-cluster armhf 1.14.4-1 [470 kB]
Get:137 http://172.17.0.1/private/ jessie-staging/main r-cran-colorspace armhf 1.2-2-1 [351 kB]
Get:138 http://172.17.0.1/private/ jessie-staging/main r-cran-dichromat all 2.0.0-2 [147 kB]
Get:139 http://172.17.0.1/private/ jessie-staging/main r-cran-formula all 1.1-1-1 [158 kB]
Get:140 http://172.17.0.1/private/ jessie-staging/main r-cran-lattice armhf 0.20-24-1 [726 kB]
Get:141 http://172.17.0.1/private/ jessie-staging/main r-cran-survival armhf 2.37-4-2 [1836 kB]
Get:142 http://172.17.0.1/private/ jessie-staging/main r-cran-rpart armhf 4.1-4-1 [876 kB]
Get:143 http://172.17.0.1/private/ jessie-staging/main r-cran-hmisc armhf 3.13-0-1 [1500 kB]
Get:144 http://172.17.0.1/private/ jessie-staging/main r-cran-labeling all 0.1-2 [37.9 kB]
Get:145 http://172.17.0.1/private/ jessie-staging/main r-cran-munsell all 0.4.2-1 [116 kB]
Get:146 http://172.17.0.1/private/ jessie-staging/main r-cran-plyr armhf 1.8-1 [563 kB]
Get:147 http://172.17.0.1/private/ jessie-staging/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB]
Get:148 http://172.17.0.1/private/ jessie-staging/main r-cran-stringr all 0.6.2-1 [73.8 kB]
Get:149 http://172.17.0.1/private/ jessie-staging/main r-cran-scales all 0.2.3-1 [157 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
Setting up tcl8.5 (8.5.14-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
Setting up tk8.5 (8.5.14-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
Setting up r-base-core (3.0.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.0.2-1) ...
Setting up r-cran-dbi (0.2-7-1) ...
Setting up r-cran-rsqlite (0.11.2-1) ...
Setting up r-bioc-biocgenerics (0.8.0-1) ...
Setting up r-bioc-biobase (2.20.0-1) ...
Setting up r-bioc-iranges (1.20.6-1) ...
Setting up r-bioc-annotationdbi (1.24.0-1) ...
Setting up r-cran-xml (3.98-1.1-1) ...
Setting up r-cran-bitops (1.0-6-1) ...
Setting up r-cran-rcurl (1.95-4.1-1) ...
Setting up r-bioc-biomart (2.18.0-1) ...
Setting up r-bioc-xvector (0.2.0-1) ...
Setting up r-bioc-biostrings (2.30.1-1) ...
Setting up r-bioc-genomicranges (1.14.3-1) ...
Setting up r-bioc-bsgenome (1.30.0-1) ...
Setting up r-bioc-rsamtools (1.14.2-1) ...
Setting up r-bioc-rtracklayer (1.22.0-1) ...
Setting up r-bioc-genomicfeatures (1.14.2-1) ...
Setting up r-cran-chron (2.3-44-1) ...
Setting up r-cran-cluster (1.14.4-1) ...
Setting up r-cran-colorspace (1.2-2-1) ...
Setting up r-cran-dichromat (2.0.0-2) ...
Setting up r-cran-formula (1.1-1-1) ...
Setting up r-cran-lattice (0.20-24-1) ...
Setting up r-cran-survival (2.37-4-2) ...
Setting up r-cran-rpart (4.1-4-1) ...
Setting up r-cran-hmisc (3.13-0-1) ...
Setting up r-cran-labeling (0.1-2) ...
Setting up r-cran-munsell (0.4.2-1) ...
Setting up r-cran-plyr (1.8-1) ...
Setting up r-cran-rcolorbrewer (1.0-5-2) ...
Setting up r-cran-stringr (0.6.2-1) ...
Setting up r-cran-scales (0.2.3-1) ...
Setting up sbuild-build-depends-r-bioc-biovizbase-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.17-97) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5 g++-4.8_4.8.2-10 gcc-4.8_4.8.2-10 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-10 libstdc++6_4.8.2-10 linux-libc-dev_3.10.11-1+rpi1
Package versions: apt_0.9.14.1+rpi1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.8_4.8.2-10 dash_0.5.7-3 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.5 dpkg-dev_1.17.5 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 fontconfig_2.11.0-2 fontconfig-config_2.11.0-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.8.2-1 g++-4.8_4.8.2-10 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-10 gcc-4.8-base_4.8.2-10 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gfortran_4:4.8.2-1 gfortran-4.8_4.8.2-10 gnupg_1.4.15-3 gpgv_1.4.15-3 grep_2.15-2 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.1+rpi1 libasan0_4.8.2-10 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-10 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-2 libaudit1_1:2.3.2-2 libblas-dev_1.2.20110419-7 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libbz2-dev_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcairo2_1.12.16-2 libcap2_1:2.22-1.2 libcloog-isl4_0.18.1-3 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libcurl3-nss_7.34.0-1 libdatrie1_0.2.7.1-1 libdb5.1_5.1.29-6 libdbus-1-3_1.6.18-2 libdpkg-perl_1.17.5 libdrm2_2.4.50-1 libegl1-mesa_9.2.2-1 libexpat1_2.1.0-4 libffi6_3.0.13-4 libfontconfig1_2.11.0-2 libfreetype6_2.5.2-1 libgbm1_9.2.2-1 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-10 libgcc1_1:4.8.2-10 libgcrypt11_1.5.3-3 libgdbm3_1.8.3-12 libgfortran-4.8-dev_4.8.2-10 libgfortran3_4.8.2-10 libgl1-mesa-glx_9.2.2-1 libglapi-mesa_9.2.2-1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgnutls26_2.12.23-8 libgomp1_4.8.2-10 libgpg-error0_1.12-0.2 libgraphite2-3_1.2.4-1 libgssapi-krb5-2_1.11.3+dfsg-3+nmu1 libharfbuzz0b_0.9.25-1 libice6_2:1.0.8-2 libidn11_1.28-1 libisl10_0.12.1-2 libjbig0_2.0-2 libjpeg8_8d-2 libjpeg8-dev_8d-2 libk5crypto3_1.11.3+dfsg-3+nmu1 libkeyutils1_1.5.6-1 libklibc_2.0.2-1+rpi1 libkmod2_9-3 libkrb5-3_1.11.3+dfsg-3+nmu1 libkrb5support0_1.11.3+dfsg-3+nmu1 liblapack-dev_3.5.0-2 liblapack3_3.5.0-2 libldap-2.4-2_2.4.31-1+nmu2+b1 libllvm3.3_1:3.3-16 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncurses5-dev_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.2 libnih1_1.0.3-4.2 libnspr4_2:4.10.2-1 libnss3_2:3.15.3.1-1 libp11-kit0_0.20.1-3 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.36.0-1+b1 libpangocairo-1.0-0_1.36.0-1+b1 libpangoft2-1.0-0_1.36.0-1+b1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.6-1 libpixman-1-0_0.32.4-1 libpng12-0_1.2.49-5 libpng12-dev_1.2.49-5 libprocps0_1:3.3.4-2 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 librtmp0_2.4+20121230.gitdf6c518-1 libsasl2-2_2.1.25.dfsg1-17 libsasl2-modules-db_2.1.25.dfsg1-17 libselinux1_2.2.1-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libsm6_2:1.2.1-2 libsqlite3-0_3.8.2-1 libss2_1.42.8-1 libssh2-1_1.4.3-2 libstdc++-4.8-dev_4.8.2-10 libstdc++6_4.8.2-10 libtasn1-3_2.14-3 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.20-1 libthai0_0.1.20-1 libtiff5_4.0.3-7 libtimedate-perl_2.3000-1 libtinfo-dev_5.9+20130608-1 libtinfo5_5.9+20130608-1 libudev1_204-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libwayland-client0_1.3.0-1+rpi1 libwayland-server0_1.3.0-1+rpi1 libx11-6_2:1.6.2-1 libx11-data_2:1.6.2-1 libx11-xcb1_2:1.6.2-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.9.1-3.1 libxcb-glx0_1.9.1-3.1 libxcb-render0_1.9.1-3.1 libxcb-shape0_1.9.1-3.1 libxcb-shm0_1.9.1-3.1 libxcb-xfixes0_1.9.1-3.1 libxcb1_1.9.1-3.1 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxft2_2.3.1-1 libxml2_2.9.1+dfsg1-3 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.10.11-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.5 mountall_2.52 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.1-5 perl-base_5.18.1-5 perl-modules_5.18.1-5 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 r-base-core_3.0.2-1 r-base-dev_3.0.2-1 r-bioc-annotationdbi_1.24.0-1 r-bioc-biobase_2.20.0-1 r-bioc-biocgenerics_0.8.0-1 r-bioc-biomart_2.18.0-1 r-bioc-biostrings_2.30.1-1 r-bioc-bsgenome_1.30.0-1 r-bioc-genomicfeatures_1.14.2-1 r-bioc-genomicranges_1.14.3-1 r-bioc-iranges_1.20.6-1 r-bioc-rsamtools_1.14.2-1 r-bioc-rtracklayer_1.22.0-1 r-bioc-xvector_0.2.0-1 r-cran-bitops_1.0-6-1 r-cran-chron_2.3-44-1 r-cran-cluster_1.14.4-1 r-cran-colorspace_1.2-2-1 r-cran-dbi_0.2-7-1 r-cran-dichromat_2.0.0-2 r-cran-formula_1.1-1-1 r-cran-hmisc_3.13-0-1 r-cran-labeling_0.1-2 r-cran-lattice_0.20-24-1 r-cran-munsell_0.4.2-1 r-cran-plyr_1.8-1 r-cran-rcolorbrewer_1.0-5-2 r-cran-rcurl_1.95-4.1-1 r-cran-rpart_4.1-4-1 r-cran-rsqlite_0.11.2-1 r-cran-scales_0.2.3-1 r-cran-stringr_0.6.2-1 r-cran-survival_2.37-4-2 r-cran-xml_3.98-1.1-1 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biovizbase-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 tcl8.5_8.5.14-2 tk8.5_8.5.14-2 tzdata_2013i-1 ucf_3.0027+nmu1 udev_204-5 unzip_6.0-10 util-linux_2.20.1-5.5 x11-common_1:7.7+5 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-8 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Dec 29 19:34:05 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biovizbase_1.10.7-1.dsc
dpkg-source: info: extracting r-bioc-biovizbase in r-bioc-biovizbase-1.10.7
dpkg-source: info: unpacking r-bioc-biovizbase_1.10.7.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biovizbase_1.10.7-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-8c657757-aa62-4e07-a036-aa47095d20ca
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 41852 22
SSH_CONNECTION=172.17.0.6 41852 172.17.2.3 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-biovizbase
dpkg-buildpackage: source version 1.10.7-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-biovizbase-1.10.7
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.0.2-1)" >> debian/r-bioc-biovizbase.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'biovizBase' ...
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c bin_offsets.c -o bin_offsets.o
gcc -std=gnu99 -shared -o biovizBase.so R_init_biovizBase.o bin_offsets.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
make[1]: Entering directory `/«PKGBUILDDIR»/src'
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'BiocGenerics::conditions' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::conditions<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::counts' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::counts<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::design' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::design<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::dispTable' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::dispTable<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::estimateDispersions' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::estimateSizeFactors' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::sizeFactors' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::sizeFactors<-' when loading 'AnnotationDbi'
** help
*** installing help indices
** building package indices
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
data set 'crc1.GeRL' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
data set 'darned_hg19_subset500' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
data set 'genesymbol' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
data set 'hg19Ideogram' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
data set 'hg19IdeogramCyto' not found
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'BiocGenerics::conditions' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::conditions<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::counts' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::counts<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::design' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::design<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::dispTable' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::dispTable<-' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::estimateDispersions' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::estimateSizeFactors' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::sizeFactors' when loading 'AnnotationDbi'
Warning: replacing previous import by 'BiocGenerics::sizeFactors<-' when loading 'AnnotationDbi'
* DONE (biovizBase)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/share/lintian/overrides/r-bioc-biovizbase; \
fi
Adding cdbs dependencies to debian/r-bioc-biovizbase.substvars
dh_installdirs -pr-bioc-biovizbase
dh_installdocs -pr-bioc-biovizbase ./NEWS
dh_installexamples -pr-bioc-biovizbase
dh_installman -pr-bioc-biovizbase
dh_installinfo -pr-bioc-biovizbase
dh_installmenu -pr-bioc-biovizbase
dh_installcron -pr-bioc-biovizbase
dh_installinit -pr-bioc-biovizbase
dh_installdebconf -pr-bioc-biovizbase
dh_installemacsen -pr-bioc-biovizbase
dh_installcatalogs -pr-bioc-biovizbase
dh_installpam -pr-bioc-biovizbase
dh_installlogrotate -pr-bioc-biovizbase
dh_installlogcheck -pr-bioc-biovizbase
dh_installchangelogs -pr-bioc-biovizbase
dh_installudev -pr-bioc-biovizbase
dh_lintian -pr-bioc-biovizbase
dh_bugfiles -pr-bioc-biovizbase
dh_install -pr-bioc-biovizbase
dh_link -pr-bioc-biovizbase
dh_installmime -pr-bioc-biovizbase
dh_installgsettings -pr-bioc-biovizbase
dh_strip -pr-bioc-biovizbase
dh_compress -pr-bioc-biovizbase
dh_fixperms -pr-bioc-biovizbase
dh_makeshlibs -pr-bioc-biovizbase
dh_installdeb -pr-bioc-biovizbase
dh_perl -pr-bioc-biovizbase
dh_shlibdeps -pr-bioc-biovizbase
dh_gencontrol -pr-bioc-biovizbase
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-biovizbase
dh_builddeb -pr-bioc-biovizbase
dpkg-deb: building package `r-bioc-biovizbase' in `../r-bioc-biovizbase_1.10.7-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-biovizbase_1.10.7-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-biovizbase-1.10.7
dpkg-buildpackage: binary only upload (no source included)
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Build finished at 20140109-0722
Finished
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I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-biovizbase_1.10.7-1_armhf.changes:
─────────────────────────────────────────
Format: 1.8
Date: Sun, 29 Dec 2013 18:56:22 +0100
Source: r-bioc-biovizbase
Binary: r-bioc-biovizbase
Architecture: armhf
Version: 1.10.7-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biovizbase - GNU R basic graphic utilities for visualization of genomic data
Closes: 733527
Changes:
r-bioc-biovizbase (1.10.7-1) unstable; urgency=low
.
* Initial release (closes: #733527)
Checksums-Sha1:
03f1eb81e07901575ae51c744ac000add7809375 1124936 r-bioc-biovizbase_1.10.7-1_armhf.deb
Checksums-Sha256:
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Files:
53b26dec430f80f6ee7c81c22ade2d71 1124936 gnu-r optional r-bioc-biovizbase_1.10.7-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-biovizbase_1.10.7-1_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
size 1124936 bytes: control archive=2019 bytes.
839 bytes, 14 lines control
3756 bytes, 44 lines md5sums
Package: r-bioc-biovizbase
Version: 1.10.7-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1353
Depends: r-base-core (>= 3.0.2-1), libc6 (>= 2.4), r-cran-dichromat, r-cran-hmisc, r-cran-rcolorbrewer, r-cran-scales, r-bioc-biobase, r-bioc-iranges, r-bioc-biostrings, r-bioc-genomicranges, r-bioc-genomicfeatures
Section: gnu-r
Priority: optional
Homepage: http://bioconductor.org/packages/release/bioc/html/biovizBase.html
Description: GNU R basic graphic utilities for visualization of genomic data
The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for
various high-level packages for biological data visualization. This
saves development effort and encourages consistency.
drwxr-xr-x root/root 0 2014-01-09 07:22 ./
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drwxr-xr-x root/root 0 2014-01-09 07:20 ./usr/lib/
drwxr-xr-x root/root 0 2014-01-09 07:20 ./usr/lib/R/
drwxr-xr-x root/root 0 2014-01-09 07:22 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/
-rw-r--r-- root/root 3926 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/NAMESPACE
-rw-r--r-- root/root 463 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/NEWS
-rw-r--r-- root/root 1339 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/DESCRIPTION
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drwxr-xr-x root/root 0 2014-01-09 07:22 ./usr/lib/R/site-library/biovizBase/libs/
-rw-r--r-- root/root 5300 2014-01-09 07:22 ./usr/lib/R/site-library/biovizBase/libs/biovizBase.so
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-rw-r--r-- root/root 1056 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/R/biovizBase
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-rw-r--r-- root/root 2211 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/R/biovizBase.rdx
drwxr-xr-x root/root 0 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/data/
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-rw-r--r-- root/root 7247 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/data/hg19IdeogramCyto.rda
drwxr-xr-x root/root 0 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/doc/
-rw-r--r-- root/root 5344 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/doc/intro-shrink-single.pdf
-rw-r--r-- root/root 5690 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/doc/intro-shrinkageFun.pdf
-rw-r--r-- root/root 7619 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/doc/intro.R
-rw-r--r-- root/root 35816 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/doc/intro.Rnw
-rw-r--r-- root/root 278391 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/doc/intro.pdf
-rw-r--r-- root/root 1531 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/doc/index.html
drwxr-xr-x root/root 0 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/examples/
-rw-r--r-- root/root 729 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/examples/color.R
-rw-r--r-- root/root 3088 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/examples/data-gen.R
-rw-r--r-- root/root 5199 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/examples/test.R
drwxr-xr-x root/root 0 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/extdata/
-rw-r--r-- root/root 334181 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam
-rw-r--r-- root/root 3776 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam.bai
-rw-r--r-- root/root 120757 2014-01-09 07:20 ./usr/lib/R/site-library/biovizBase/extdata/crc-rearrangment.csv
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drwxr-xr-x root/root 0 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/help/
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-rw-r--r-- root/root 2240 2014-01-09 07:21 ./usr/lib/R/site-library/biovizBase/INDEX
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drwxr-xr-x root/root 0 2014-01-09 07:22 ./usr/share/doc/r-bioc-biovizbase/
-rw-r--r-- root/root 289 2013-09-12 08:59 ./usr/share/doc/r-bioc-biovizbase/README.test
-rw-r--r-- root/root 5318 2013-12-29 19:23 ./usr/share/doc/r-bioc-biovizbase/copyright
-rw-r--r-- root/root 267 2013-10-14 22:27 ./usr/share/doc/r-bioc-biovizbase/NEWS.gz
-rw-r--r-- root/root 160 2013-12-29 19:31 ./usr/share/doc/r-bioc-biovizbase/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 4144
Build-Time: 139
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 615
Job: r-bioc-biovizbase_1.10.7-1
Machine Architecture: armhf
Package: r-bioc-biovizbase
Package-Time: 809
Source-Version: 1.10.7-1
Space: 4144
Status: successful
Version: 1.10.7-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140109-0722
Build needed 00:13:29, 4144k disc space