r-bioc-biostrings →
2.66.0-1 →
armhf → 2022-12-06 05:45:18
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-biostrings 2.66.0-1 (armhf) Tue, 06 Dec 2022 05:33:28 +0000 |
+==============================================================================+
Package: r-bioc-biostrings
Version: 2.66.0-1
Source Version: 2.66.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-be432e7c-fcc3-4012-a2cb-89c8080c2ae4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 10s (2704 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.4 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.66.0-1 (dsc) [2254 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.66.0-1 (tar) [12.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.66.0-1 (diff) [4964 B]
Fetched 12.4 MB in 1s (11.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-0Day4z/r-bioc-biostrings-2.66.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-0Day4z' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-iR4LZP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-iR4LZP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-iR4LZP/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8181 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 81 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (60.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-xvector (>= 0.37.1), r-bioc-genomeinfodb, r-cran-crayon
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-xvector (>= 0.37.1), r-bioc-genomeinfodb, r-cran-crayon
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biostrings-dummy' in '/<<BUILDDIR>>/resolver-iR4LZP/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biostrings-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Sources [578 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ Packages [660 B]
Fetched 2571 B in 0s (10.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-biostrings build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates cpp-12 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core g++-12 gcc-12 gcc-12-base gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libasan8 libatomic1 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblkid1 libbrotli1 libbsd0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran-12-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
liblzma5 libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
libncurses5-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev
libpng16-16 libpsl5 libreadline-dev libreadline8 libregexp-ipv6-perl
librtmp1 libsm6 libsmartcols1 libssh2-1 libssl3 libstdc++-12-dev libstdc++6
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount
openssl pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev
r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops
r-cran-crayon r-cran-rcurl readline-common ucf unzip util-linux
util-linux-extra x11-common xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
debtags dh-make postgresql-client-common gcc-12-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
libcoarrays-dev groff liblapack-doc low-memory-monitor icu-doc liblzma-doc
cryptsetup-bin ncurses-doc libscalar-number-perl readline-doc
libstdc++-12-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome
r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix
r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-rstudioapi r-cran-xml
dosfstools kbd util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libdevel-partialdump-perl
libgpm2 libpng-tools publicsuffix libltdl-dev uuid-runtime
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-cran-withr
r-cran-mockery libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config pkgconf
pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors
r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-crayon r-cran-rcurl
sbuild-build-depends-r-bioc-biostrings-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 liblzma5 libmount1 libpcre2-8-0
libreadline8 libsmartcols1 libssl3 libstdc++-12-dev libstdc++6 libubsan1
libuuid1 mount readline-common util-linux util-linux-extra xz-utils
27 upgraded, 182 newly installed, 0 to remove and 54 not upgraded.
Need to get 150 MB of archives.
After this operation, 297 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iR4LZP/apt_archive ./ sbuild-build-depends-r-bioc-biostrings-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.2 [68.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.8-0.0 [175 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.2 [142 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.8-0.0 [333 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-9+rpi1 [285 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-9+rpi1 [7509 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.38-2 [352 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.8-0.0 [232 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.0-1 [2036 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.9+dfsg-1 [776 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.34.3-1 [3920 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.38.0-1 [606 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 150 MB in 16s (9426 kB/s)
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../bsdutils_1%3a2.38.1-4_armhf.deb ...
Unpacking bsdutils (1:2.38.1-4) over (1:2.38.1-1.1) ...
Setting up bsdutils (1:2.38.1-4) ...
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../libsmartcols1_2.38.1-4_armhf.deb ...
Unpacking libsmartcols1:armhf (2.38.1-4) over (2.38.1-1.1) ...
Setting up libsmartcols1:armhf (2.38.1-4) ...
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../util-linux-extra_2.38.1-4_armhf.deb ...
Unpacking util-linux-extra (2.38.1-4) over (2.38.1-1.1) ...
Setting up util-linux-extra (2.38.1-4) ...
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../util-linux_2.38.1-4_armhf.deb ...
Unpacking util-linux (2.38.1-4) over (2.38.1-1.1) ...
Setting up util-linux (2.38.1-4) ...
(Reading database ... 14773 files and directories currently installed.)
Preparing to unpack .../mount_2.38.1-4_armhf.deb ...
Unpacking mount (2.38.1-4) over (2.38.1-1.1) ...
Preparing to unpack .../readline-common_8.2-1.2_all.deb ...
Unpacking readline-common (8.2-1.2) over (8.2-1) ...
Setting up readline-common (8.2-1.2) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../0-libcc1-0_12.2.0-9+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../1-libgomp1_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../2-libatomic1_12.2.0-9+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../3-libasan8_12.2.0-9+rpi1_armhf.deb ...
Unpacking libasan8:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../4-libubsan1_12.2.0-9+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../5-gcc-12-base_12.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-12-base:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Setting up gcc-12-base:armhf (12.2.0-9+rpi1) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../libstdc++6_12.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Setting up libstdc++6:armhf (12.2.0-9+rpi1) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../0-g++-12_12.2.0-9+rpi1_armhf.deb ...
Unpacking g++-12 (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../1-libstdc++-12-dev_12.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++-12-dev:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../2-libgcc-12-dev_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc-12-dev:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../3-gcc-12_12.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-12 (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../4-cpp-12_12.2.0-9+rpi1_armhf.deb ...
Unpacking cpp-12 (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Preparing to unpack .../5-libgcc-s1_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
Setting up libgcc-s1:armhf (12.2.0-9+rpi1) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../libblkid1_2.38.1-4_armhf.deb ...
Unpacking libblkid1:armhf (2.38.1-4) over (2.38.1-1.1) ...
Setting up libblkid1:armhf (2.38.1-4) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../liblzma5_5.2.8-0.0_armhf.deb ...
Unpacking liblzma5:armhf (5.2.8-0.0) over (5.2.5-2.1) ...
Setting up liblzma5:armhf (5.2.8-0.0) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../libmount1_2.38.1-4_armhf.deb ...
Unpacking libmount1:armhf (2.38.1-4) over (2.38.1-1.1) ...
Setting up libmount1:armhf (2.38.1-4) ...
(Reading database ... 14772 files and directories currently installed.)
Preparing to unpack .../libpcre2-8-0_10.40-2_armhf.deb ...
Unpacking libpcre2-8-0:armhf (10.40-2) over (10.40-1+b2) ...
Setting up libpcre2-8-0:armhf (10.40-2) ...
(Reading database ... 14771 files and directories currently installed.)
Preparing to unpack .../libreadline8_8.2-1.2_armhf.deb ...
Unpacking libreadline8:armhf (8.2-1.2) over (8.2-1) ...
Setting up libreadline8:armhf (8.2-1.2) ...
(Reading database ... 14771 files and directories currently installed.)
Preparing to unpack .../libuuid1_2.38.1-4_armhf.deb ...
Unpacking libuuid1:armhf (2.38.1-4) over (2.38.1-1.1) ...
Setting up libuuid1:armhf (2.38.1-4) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 14770 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../001-groff-base_1.22.4-9_armhf.deb ...
Unpacking groff-base (1.22.4-9) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../002-bsdextrautils_2.38.1-4_armhf.deb ...
Unpacking bsdextrautils (2.38.1-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.11.1-1_armhf.deb ...
Unpacking man-db (2.11.1-1) ...
Preparing to unpack .../005-libssl3_3.0.7-1_armhf.deb ...
Unpacking libssl3:armhf (3.0.7-1) over (3.0.5-4) ...
Selecting previously unselected package openssl.
Preparing to unpack .../006-openssl_3.0.7-1_armhf.deb ...
Unpacking openssl (3.0.7-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../007-ca-certificates_20211016_all.deb ...
Unpacking ca-certificates (20211016) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../008-libmagic-mgc_1%3a5.41-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.41-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../009-libmagic1_1%3a5.41-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.41-4) ...
Selecting previously unselected package file.
Preparing to unpack .../010-file_1%3a5.41-4_armhf.deb ...
Unpacking file (1:5.41-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../011-gettext-base_0.21-10_armhf.deb ...
Unpacking gettext-base (0.21-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../012-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Preparing to unpack .../013-xz-utils_5.2.8-0.0_armhf.deb ...
Unpacking xz-utils (5.2.8-0.0) over (5.2.5-2.1) ...
Selecting previously unselected package m4.
Preparing to unpack .../014-m4_1.4.19-1_armhf.deb ...
Unpacking m4 (1.4.19-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../015-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.21-10_all.deb ...
Unpacking autopoint (0.21-10) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../019-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../020-libdebhelper-perl_13.11.1_all.deb ...
Unpacking libdebhelper-perl (13.11.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../021-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../022-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.0-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.0-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../026-dh-strip-nondeterminism_1.13.0-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.0-2) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../027-libelf1_0.187-2+rpi2_armhf.deb ...
Unpacking libelf1:armhf (0.187-2+rpi2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../028-dwz_0.14+20220924-2_armhf.deb ...
Unpacking dwz (0.14+20220924-2) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../029-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../031-gettext_0.21-10_armhf.deb ...
Unpacking gettext (0.21-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../034-debhelper_13.11.1_all.deb ...
Unpacking debhelper (13.11.1) ...
Selecting previously unselected package zip.
Preparing to unpack .../035-zip_3.0-12_armhf.deb ...
Unpacking zip (3.0-12) ...
Selecting previously unselected package unzip.
Preparing to unpack .../036-unzip_6.0-27_armhf.deb ...
Unpacking unzip (6.0-27) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../037-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../038-libpaper-utils_1.1.28_armhf.deb ...
Unpacking libpaper-utils (1.1.28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ...
Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../040-libblas3_3.10.1-2_armhf.deb ...
Unpacking libblas3:armhf (3.10.1-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../041-libexpat1_2.5.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../042-libbrotli1_1.0.9-2+b2_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b2) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../043-libpng16-16_1.6.38-2_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.38-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-3_armhf.deb ...
Unpacking libfreetype6:armhf (2.12.1+dfsg-3) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../045-fonts-dejavu-core_2.37-2_all.deb ...
Unpacking fonts-dejavu-core (2.37-2) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../046-fontconfig-config_2.13.1-4.5_armhf.deb ...
Unpacking fontconfig-config (2.13.1-4.5) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../047-libfontconfig1_2.13.1-4.5_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-4.5) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../048-libpixman-1-0_0.42.2-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.42.2-1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../049-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../050-libmd0_1.0.4-2_armhf.deb ...
Unpacking libmd0:armhf (1.0.4-2) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../051-libbsd0_0.11.7-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.7-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../052-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../053-libxcb1_1.15-1_armhf.deb ...
Unpacking libxcb1:armhf (1.15-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../054-libx11-data_2%3a1.8.1-2_all.deb ...
Unpacking libx11-data (2:1.8.1-2) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../055-libx11-6_2%3a1.8.1-2_armhf.deb ...
Unpacking libx11-6:armhf (2:1.8.1-2) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../056-libxcb-render0_1.15-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.15-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../057-libxcb-shm0_1.15-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.15-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../058-libxext6_2%3a1.3.4-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.4-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../060-libcairo2_1.16.0-6_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-6) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../061-libnghttp2-14_1.50.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.50.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../062-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../063-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../064-libssh2-1_1.10.0-3+b1_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-3+b1) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../065-libcurl4_7.86.0-2_armhf.deb ...
Unpacking libcurl4:armhf (7.86.0-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../066-libglib2.0-0_2.74.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.74.1-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../067-libjpeg62-turbo_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.2-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../068-libgfortran5_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (12.2.0-9+rpi1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../069-liblapack3_3.10.1-2_armhf.deb ...
Unpacking liblapack3:armhf (3.10.1-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../070-fontconfig_2.13.1-4.5_armhf.deb ...
Unpacking fontconfig (2.13.1-4.5) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../071-libfribidi0_1.0.8-2.1_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.8-2.1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../072-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../073-libharfbuzz0b_5.2.0-2+b1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (5.2.0-2+b1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../074-libthai-data_0.1.29-1_all.deb ...
Unpacking libthai-data (0.1.29-1) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../075-libdatrie1_0.2.13-2+b2_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.13-2+b2) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../076-libthai0_0.1.29-1_armhf.deb ...
Unpacking libthai0:armhf (0.1.29-1) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../077-libpango-1.0-0_1.50.10+ds-1_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.50.10+ds-1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../078-libpangoft2-1.0-0_1.50.10+ds-1_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../079-libpangocairo-1.0-0_1.50.10+ds-1_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../080-libtcl8.6_8.6.13+dfsg-1_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.13+dfsg-1) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../081-libdeflate0_1.14-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.14-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../082-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package liblerc4:armhf.
Preparing to unpack .../083-liblerc4_4.0.0+ds-2_armhf.deb ...
Unpacking liblerc4:armhf (4.0.0+ds-2) ...
Selecting previously unselected package libwebp7:armhf.
Preparing to unpack .../084-libwebp7_1.2.2-2+b1_armhf.deb ...
Unpacking libwebp7:armhf (1.2.2-2+b1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../085-libtiff5_4.4.0-6_armhf.deb ...
Unpacking libtiff5:armhf (4.4.0-6) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../086-libxft2_2.3.6-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.6-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../087-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../088-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../089-libtk8.6_8.6.13-1_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.13-1) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../090-libice6_2%3a1.0.10-1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.10-1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../091-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../092-libxt6_1%3a1.2.1-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.2.1-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../093-r-base-core_4.2.2.20221110-1_armhf.deb ...
Unpacking r-base-core (4.2.2.20221110-1) ...
Selecting previously unselected package libgfortran-12-dev:armhf.
Preparing to unpack .../094-libgfortran-12-dev_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran-12-dev:armhf (12.2.0-9+rpi1) ...
Selecting previously unselected package gfortran-12.
Preparing to unpack .../095-gfortran-12_12.2.0-9+rpi1_armhf.deb ...
Unpacking gfortran-12 (12.2.0-9+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../096-gfortran_4%3a12.2.0-1+rpi1_armhf.deb ...
Unpacking gfortran (4:12.2.0-1+rpi1) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../097-libblas-dev_3.10.1-2_armhf.deb ...
Unpacking libblas-dev:armhf (3.10.1-2) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../098-liblapack-dev_3.10.1-2_armhf.deb ...
Unpacking liblapack-dev:armhf (3.10.1-2) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../099-libncurses6_6.3+20220423-2_armhf.deb ...
Unpacking libncurses6:armhf (6.3+20220423-2) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../100-libncurses-dev_6.3+20220423-2_armhf.deb ...
Unpacking libncurses-dev:armhf (6.3+20220423-2) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../101-libncurses5-dev_6.3+20220423-2_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.3+20220423-2) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../102-libreadline-dev_8.2-1.2_armhf.deb ...
Unpacking libreadline-dev:armhf (8.2-1.2) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../103-libjpeg62-turbo-dev_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Selecting previously unselected package libjpeg-dev:armhf.
Preparing to unpack .../104-libjpeg-dev_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg-dev:armhf (1:2.1.2-1) ...
Selecting previously unselected package libpcre2-16-0:armhf.
Preparing to unpack .../105-libpcre2-16-0_10.40-2_armhf.deb ...
Unpacking libpcre2-16-0:armhf (10.40-2) ...
Selecting previously unselected package libpcre2-32-0:armhf.
Preparing to unpack .../106-libpcre2-32-0_10.40-2_armhf.deb ...
Unpacking libpcre2-32-0:armhf (10.40-2) ...
Selecting previously unselected package libpcre2-posix3:armhf.
Preparing to unpack .../107-libpcre2-posix3_10.40-2_armhf.deb ...
Unpacking libpcre2-posix3:armhf (10.40-2) ...
Selecting previously unselected package libpcre2-dev:armhf.
Preparing to unpack .../108-libpcre2-dev_10.40-2_armhf.deb ...
Unpacking libpcre2-dev:armhf (10.40-2) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../109-libpcre16-3_2%3a8.39-14_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-14) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../110-libpcre32-3_2%3a8.39-14_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-14) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../111-libpcrecpp0v5_2%3a8.39-14_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-14) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../112-libpcre3-dev_2%3a8.39-14_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-14) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../113-zlib1g-dev_1%3a1.2.11.dfsg-4.1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../114-libpng-dev_1.6.38-2_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.38-2) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../115-libbz2-dev_1.0.8-5+b2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-5+b2) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../116-liblzma-dev_5.2.8-0.0_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.8-0.0) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../117-icu-devtools_72.1-3_armhf.deb ...
Unpacking icu-devtools (72.1-3) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../118-libicu-dev_72.1-3_armhf.deb ...
Unpacking libicu-dev:armhf (72.1-3) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../119-libxmuu1_2%3a1.1.3-3_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.3-3) ...
Selecting previously unselected package xauth.
Preparing to unpack .../120-xauth_1%3a1.1.1-1_armhf.deb ...
Unpacking xauth (1:1.1.1-1) ...
Selecting previously unselected package libpkgconf3:armhf.
Preparing to unpack .../121-libpkgconf3_1.8.0-11_armhf.deb ...
Unpacking libpkgconf3:armhf (1.8.0-11) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../122-pkgconf-bin_1.8.0-11_armhf.deb ...
Unpacking pkgconf-bin (1.8.0-11) ...
Selecting previously unselected package pkgconf:armhf.
Preparing to unpack .../123-pkgconf_1.8.0-11_armhf.deb ...
Unpacking pkgconf:armhf (1.8.0-11) ...
Selecting previously unselected package pkg-config:armhf.
Preparing to unpack .../124-pkg-config_1.8.0-11_armhf.deb ...
Unpacking pkg-config:armhf (1.8.0-11) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../125-r-base-dev_4.2.2.20221110-1_all.deb ...
Unpacking r-base-dev (4.2.2.20221110-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../126-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../127-libswitch-perl_2.17-3_all.deb ...
Unpacking libswitch-perl (2.17-3) ...
Selecting previously unselected package libclone-perl:armhf.
Preparing to unpack .../128-libclone-perl_0.46-1_armhf.deb ...
Unpacking libclone-perl:armhf (0.46-1) ...
Selecting previously unselected package libencode-locale-perl.
Preparing to unpack .../129-libencode-locale-perl_1.05-3_all.deb ...
Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../130-libtimedate-perl_2.3300-2_all.deb ...
Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libhttp-date-perl.
Preparing to unpack .../131-libhttp-date-perl_6.05-2_all.deb ...
Unpacking libhttp-date-perl (6.05-2) ...
Selecting previously unselected package libio-html-perl.
Preparing to unpack .../132-libio-html-perl_1.004-3_all.deb ...
Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
Preparing to unpack .../133-liblwp-mediatypes-perl_6.04-1_all.deb ...
Unpacking liblwp-mediatypes-perl (6.04-1) ...
Selecting previously unselected package libregexp-ipv6-perl.
Preparing to unpack .../134-libregexp-ipv6-perl_0.03-3_all.deb ...
Unpacking libregexp-ipv6-perl (0.03-3) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../135-liburi-perl_5.17-1_all.deb ...
Unpacking liburi-perl (5.17-1) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../136-libhttp-message-perl_6.44-1_all.deb ...
Unpacking libhttp-message-perl (6.44-1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../137-libparams-util-perl_1.102-2+b1_armhf.deb ...
Unpacking libparams-util-perl (1.102-2+b1) ...
Selecting previously unselected package libsub-install-perl.
Preparing to unpack .../138-libsub-install-perl_0.928-3_all.deb ...
Unpacking libsub-install-perl (0.928-3) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../139-libdata-optlist-perl_0.112-1_all.deb ...
Unpacking libdata-optlist-perl (0.112-1) ...
Selecting previously unselected package libb-hooks-op-check-perl:armhf.
Preparing to unpack .../140-libb-hooks-op-check-perl_0.22-2+b1_armhf.deb ...
Unpacking libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../141-libdynaloader-functions-perl_0.003-3_all.deb ...
Unpacking libdynaloader-functions-perl (0.003-3) ...
Selecting previously unselected package libdevel-callchecker-perl:armhf.
Preparing to unpack .../142-libdevel-callchecker-perl_0.008-2_armhf.deb ...
Unpacking libdevel-callchecker-perl:armhf (0.008-2) ...
Selecting previously unselected package libparams-classify-perl:armhf.
Preparing to unpack .../143-libparams-classify-perl_0.015-2+b1_armhf.deb ...
Unpacking libparams-classify-perl:armhf (0.015-2+b1) ...
Selecting previously unselected package libmodule-runtime-perl.
Preparing to unpack .../144-libmodule-runtime-perl_0.016-2_all.deb ...
Unpacking libmodule-runtime-perl (0.016-2) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../145-libtry-tiny-perl_0.31-2_all.deb ...
Unpacking libtry-tiny-perl (0.31-2) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../146-libmodule-implementation-perl_0.09-2_all.deb ...
Unpacking libmodule-implementation-perl (0.09-2) ...
Selecting previously unselected package libpackage-stash-perl.
Preparing to unpack .../147-libpackage-stash-perl_0.40-1_all.deb ...
Unpacking libpackage-stash-perl (0.40-1) ...
Selecting previously unselected package libclass-load-perl.
Preparing to unpack .../148-libclass-load-perl_0.25-1_all.deb ...
Unpacking libclass-load-perl (0.25-1) ...
Selecting previously unselected package libclass-load-xs-perl.
Preparing to unpack .../149-libclass-load-xs-perl_0.10-2+b1_armhf.deb ...
Unpacking libclass-load-xs-perl (0.10-2+b1) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../150-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
Selecting previously unselected package libdevel-globaldestruction-perl.
Preparing to unpack .../151-libdevel-globaldestruction-perl_0.14-4_all.deb ...
Unpacking libdevel-globaldestruction-perl (0.14-4) ...
Selecting previously unselected package libalgorithm-c3-perl.
Preparing to unpack .../152-libalgorithm-c3-perl_0.11-2_all.deb ...
Unpacking libalgorithm-c3-perl (0.11-2) ...
Selecting previously unselected package libclass-c3-perl.
Preparing to unpack .../153-libclass-c3-perl_0.35-2_all.deb ...
Unpacking libclass-c3-perl (0.35-2) ...
Selecting previously unselected package libmro-compat-perl.
Preparing to unpack .../154-libmro-compat-perl_0.15-1_all.deb ...
Unpacking libmro-compat-perl (0.15-1) ...
Selecting previously unselected package libdevel-overloadinfo-perl.
Preparing to unpack .../155-libdevel-overloadinfo-perl_0.007-1_all.deb ...
Unpacking libdevel-overloadinfo-perl (0.007-1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../156-libdevel-stacktrace-perl_2.0400-2_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0400-2) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../157-libsub-exporter-perl_0.988-1_all.deb ...
Unpacking libsub-exporter-perl (0.988-1) ...
Selecting previously unselected package libeval-closure-perl.
Preparing to unpack .../158-libeval-closure-perl_0.14-3_all.deb ...
Unpacking libeval-closure-perl (0.14-3) ...
Selecting previously unselected package libdist-checkconflicts-perl.
Preparing to unpack .../159-libdist-checkconflicts-perl_0.11-2_all.deb ...
Unpacking libdist-checkconflicts-perl (0.11-2) ...
Selecting previously unselected package libmodule-runtime-conflicts-perl.
Preparing to unpack .../160-libmodule-runtime-conflicts-perl_0.003-2_all.deb ...
Unpacking libmodule-runtime-conflicts-perl (0.003-2) ...
Selecting previously unselected package libsub-name-perl:armhf.
Preparing to unpack .../161-libsub-name-perl_0.26-2+b1_armhf.deb ...
Unpacking libsub-name-perl:armhf (0.26-2+b1) ...
Selecting previously unselected package libpackage-deprecationmanager-perl.
Preparing to unpack .../162-libpackage-deprecationmanager-perl_0.17-2_all.deb ...
Unpacking libpackage-deprecationmanager-perl (0.17-2) ...
Selecting previously unselected package libpackage-stash-xs-perl:armhf.
Preparing to unpack .../163-libpackage-stash-xs-perl_0.30-1+b1_armhf.deb ...
Unpacking libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Selecting previously unselected package libmoose-perl:armhf.
Preparing to unpack .../164-libmoose-perl_2.2200-1+b2_armhf.deb ...
Unpacking libmoose-perl:armhf (2.2200-1+b2) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../165-libvariable-magic-perl_0.63-1+b1_armhf.deb ...
Unpacking libvariable-magic-perl (0.63-1+b1) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../166-libb-hooks-endofscope-perl_0.26-1_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.26-1) ...
Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../167-libsub-identify-perl_0.14-3_armhf.deb ...
Unpacking libsub-identify-perl (0.14-3) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../168-libnamespace-clean-perl_0.27-2_all.deb ...
Unpacking libnamespace-clean-perl (0.27-2) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../169-libcurl3-gnutls_7.86.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.86.0-2) ...
Selecting previously unselected package libwww-curl-perl:armhf.
Preparing to unpack .../170-libwww-curl-perl_4.17-8+b1_armhf.deb ...
Unpacking libwww-curl-perl:armhf (4.17-8+b1) ...
Selecting previously unselected package libwww-curl-simple-perl.
Preparing to unpack .../171-libwww-curl-simple-perl_0.100191-3_all.deb ...
Unpacking libwww-curl-simple-perl (0.100191-3) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../172-dh-r_20210816_all.deb ...
Unpacking dh-r (20210816) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../173-r-bioc-biocgenerics_0.44.0-2_all.deb ...
Unpacking r-bioc-biocgenerics (0.44.0-2) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../174-r-bioc-s4vectors_0.36.0-1_armhf.deb ...
Unpacking r-bioc-s4vectors (0.36.0-1) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../175-r-bioc-iranges_2.32.0-1_armhf.deb ...
Unpacking r-bioc-iranges (2.32.0-1) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../176-r-cran-bitops_1.0-7-1_armhf.deb ...
Unpacking r-cran-bitops (1.0-7-1) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../177-r-cran-rcurl_1.98-1.9+dfsg-1_armhf.deb ...
Unpacking r-cran-rcurl (1.98-1.9+dfsg-1) ...
Selecting previously unselected package r-bioc-genomeinfodbdata.
Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.9-1_all.deb ...
Unpacking r-bioc-genomeinfodbdata (1.2.9-1) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../179-r-bioc-genomeinfodb_1.34.3-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.34.3-1) ...
Selecting previously unselected package r-bioc-zlibbioc.
Preparing to unpack .../180-r-bioc-zlibbioc_1.44.0+dfsg-1_all.deb ...
Unpacking r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../181-r-bioc-xvector_0.38.0-1_armhf.deb ...
Unpacking r-bioc-xvector (0.38.0-1) ...
Selecting previously unselected package r-cran-crayon.
Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ...
Unpacking r-cran-crayon (1.5.2-1) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-biostrings-dummy.
Preparing to unpack .../183-sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-14) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up cpp-12 (12.2.0-9+rpi1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libpcre16-3:armhf (2:8.39-14) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.74.1-2) ...
No schema files found: doing nothing.
Setting up unzip (6.0-27) ...
Setting up libdebhelper-perl (13.11.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.50.0-1) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.41-4) ...
Setting up libgomp1:armhf (12.2.0-9+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.40-2) ...
Setting up libsub-install-perl (0.928-3) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.40-2) ...
Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.0-11) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.1-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up xz-utils (5.2.8-0.0) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libpng16-16:armhf (1.6.38-2) ...
Setting up libpcre32-3:armhf (2:8.39-14) ...
Setting up libatomic1:armhf (12.2.0-9+rpi1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-1) ...
Setting up autopoint (0.21-10) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-3) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up pkgconf-bin (1.8.0-11) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (12.2.0-9+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.2.2-2+b1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up liblzma-dev:armhf (5.2.8-0.0) ...
Setting up libubsan1:armhf (12.2.0-9+rpi1) ...
Setting up libsub-name-perl:armhf (0.26-2+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Setting up libpcre2-posix3:armhf (10.40-2) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up mount (2.38.1-4) ...
Setting up libasan8:armhf (12.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libtiff5:armhf (4.4.0-6) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (12.2.0-9+rpi1) ...
Setting up liburi-perl (5.17-1) ...
Setting up libblas-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-10) ...
Setting up libpcre2-dev:armhf (10.40-2) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up fontconfig-config (2.13.1-4.5) ...
Setting up libpng-dev:armhf (1.6.38-2) ...
Setting up libssl3:armhf (3.0.7-1) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.2) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.0-11) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libgcc-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up pkg-config:armhf (1.8.0-11) ...
Setting up dh-strip-nondeterminism (1.13.0-2) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2+b1) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up openssl (3.0.7-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libcurl3-gnutls:armhf (7.86.0-2) ...
Setting up libgfortran-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gcc-12 (12.2.0-9+rpi1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libcurl4:armhf (7.86.0-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libwww-curl-perl:armhf (4.17-8+b1) ...
Setting up debhelper (13.11.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up gfortran-12 (12.2.0-9+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b2) ...
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.2.20221110-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-base-dev (4.2.2.20221110-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.36.0-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rcurl (1.98-1.9+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.34.3-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-9+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-9+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl3-gnutls_7.86.0-2 libcurl4_7.86.0-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdeflate0_1.14-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.187-2+rpi2 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-2 libfile-which-perl_1.27-2 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-9+rpi1 libgcc-s1_12.2.0-9+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-9+rpi1 libgfortran5_12.2.0-9+rpi1 libglib2.0-0_2.74.1-2 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-9+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2+b1 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-1 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.2.8-0.0 liblzma5_5.2.8-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2200-1+b2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-2 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-2 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-2 libpcre2-32-0_10.40-2 libpcre2-8-0_10.40-2 libpcre2-dev_10.40-2 libpcre2-posix3_10.40-2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.0-11 libpng-dev_1.6.38-2 libpng16-16_1.6.38-2 libpsl5_0.21.0-1.2 libreadline-dev_8.2-1.2 libreadline8_8.2-1.2 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-4 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.928-3 libsub-name-perl_0.26-2+b1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-6 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-1 libtool_2.4.7-5 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.17-1 libuuid1_2.38.1-4 libvariable-magic-perl_0.63-1+b1 libwebp7_1.2.2-2+b1 libwww-curl-perl_4.17-8+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.7-1 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 r-base-core_4.2.2.20221110-1 r-base-dev_4.2.2.20221110-1 r-bioc-biocgenerics_0.44.0-2 r-bioc-genomeinfodb_1.34.3-1 r-bioc-genomeinfodbdata_1.2.9-1 r-bioc-iranges_2.32.0-1 r-bioc-s4vectors_0.36.0-1 r-bioc-xvector_0.38.0-1 r-bioc-zlibbioc_1.44.0+dfsg-1 r-cran-bitops_1.0-7-1 r-cran-crayon_1.5.2-1 r-cran-rcurl_1.98-1.9+dfsg-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.8-0.0 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zb3RbiBi/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 21 06:26:00 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-biostrings_2.66.0-1.dsc
dpkg-source: info: extracting r-bioc-biostrings in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biostrings_2.66.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.66.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-be432e7c-fcc3-4012-a2cb-89c8080c2ae4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biostrings
dpkg-buildpackage: info: source version 2.66.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-biostrings/ -a -O--buildsystem=R
I: R Package: Biostrings Version: 2.66.0
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 21 Nov 2022 07:11:38 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 21 Nov 2022 07:11:38 +0100'"
* installing *source* package 'Biostrings' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c BAB_class.c -o BAB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c BitMatrix.c -o BitMatrix.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MIndex_class.c -o MIndex_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SparseList_utils.c -o SparseList_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XStringSetList_class.c -o XStringSetList_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XStringSet_class.c -o XStringSet_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XString_class.c -o XString_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_needwunsQS.c -o align_needwunsQS.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_utils.c -o align_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c find_palindromes.c -o find_palindromes.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gtestsim.c -o gtestsim.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inject_code.c -o inject_code.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c letter_frequency.c -o letter_frequency.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowlevel_matching.c -o lowlevel_matching.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_PWM.c -o match_PWM.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern.c -o match_pattern.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_indels.c -o match_pattern_indels.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict.c -o match_pdict.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_utils.c -o match_pdict_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_reporting.c -o match_reporting.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matchprobes.c -o matchprobes.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pmatchPattern.c -o pmatchPattern.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c read_fasta_files.c -o read_fasta_files.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c read_fastq_files.c -o read_fastq_files.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceAt.c -o replaceAt.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replace_letter_at.c -o replace_letter_at.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c strutils.c -o strutils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c translate.c -o translate.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c xscat.c -o xscat.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/00LOCK-r-bioc-biostrings-2.66.0/00new/Biostrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'twoWayAlphabetFrequencyByQuality' with signature '"QualityScaledXStringSet"': no definition for class "QualityScaledXStringSet"
Creating a new generic function for 'strsplit' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'pattern' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Biostrings)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.31.2)
I: Using r-bioc-xvector for Depends:XVector (>= 0.37.1)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.13.14)
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg18
W: Cannot find a debian package for Suggests:drosophila2probe
W: Cannot find a debian package for Suggests:hgu95av2probe
W: Cannot find a debian package for Suggests:hgu133aprobe
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.3.14)
W: Cannot find a debian package for Suggests:hgu95av2cdf
I: Using r-bioc-affy for Suggests:affy (>= 1.41.3)
W: Cannot find a debian package for Suggests:affydata (>= 1.11.5)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-crayon for Imports:crayon
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-biostrings as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.66.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.66.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-biostrings_2.66.0-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-biostrings_2.66.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-06T05:45:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biostrings_2.66.0-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Mon, 21 Nov 2022 07:11:38 +0100
Source: r-bioc-biostrings
Binary: r-bioc-biostrings r-bioc-biostrings-dbgsym
Architecture: armhf
Version: 2.66.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
r-bioc-biostrings (2.66.0-1) unstable; urgency=medium
.
* Disable reprotest
* New upstream version
* dh-update-R to update Build-Depends (routine-update)
Checksums-Sha1:
ad7529e3cc63c7b2bf6f247653da4d5bac01ddb8 233464 r-bioc-biostrings-dbgsym_2.66.0-1_armhf.deb
50fbfe5fbe37b1bd1c7ff187291749a7f1649a51 10093 r-bioc-biostrings_2.66.0-1_armhf.buildinfo
377c29101765622de019471ebbe07b4ae4d1401b 13840936 r-bioc-biostrings_2.66.0-1_armhf.deb
Checksums-Sha256:
538abcbb389766c2047751d0cf1451e5d31cb48decf31c461f1ef2271350559b 233464 r-bioc-biostrings-dbgsym_2.66.0-1_armhf.deb
a7fb5051a5bd2372eeb36f5eb0e1cc0a334994dc537984868ebc4f2ee4872d8c 10093 r-bioc-biostrings_2.66.0-1_armhf.buildinfo
271507c3bf789cce0627884327faee93eba43c4153c8d887dafe2dc19a976e3f 13840936 r-bioc-biostrings_2.66.0-1_armhf.deb
Files:
8e82fd24592701021c38c5843ed9c3cc 233464 debug optional r-bioc-biostrings-dbgsym_2.66.0-1_armhf.deb
3c82af22825fd20e7b1e8c0d7f805120 10093 gnu-r optional r-bioc-biostrings_2.66.0-1_armhf.buildinfo
935307f59ecc1841f79212644db5d235 13840936 gnu-r optional r-bioc-biostrings_2.66.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biostrings-dbgsym_2.66.0-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 233464 bytes: control archive=536 bytes.
406 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biostrings-dbgsym
Source: r-bioc-biostrings
Version: 2.66.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 271
Depends: r-bioc-biostrings (= 2.66.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-biostrings
Build-Ids: 936237cd3f64210a2322ef0e2070756d277115c3
drwxr-xr-x root/root 0 2022-11-21 06:11 ./
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/debug/.build-id/93/
-rw-r--r-- root/root 266800 2022-11-21 06:11 ./usr/lib/debug/.build-id/93/6237cd3f64210a2322ef0e2070756d277115c3.debug
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/share/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-21 06:11 ./usr/share/doc/r-bioc-biostrings-dbgsym -> r-bioc-biostrings
r-bioc-biostrings_2.66.0-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 13840936 bytes: control archive=3012 bytes.
842 bytes, 14 lines control
7207 bytes, 81 lines md5sums
Package: r-bioc-biostrings
Version: 2.66.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 15052
Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-xvector (>= 0.37.1), r-bioc-genomeinfodb, r-cran-crayon, libc6 (>= 2.7)
Suggests: r-bioc-bsgenome (>= 1.13.14), r-bioc-genomicfeatures (>= 1.3.14), r-bioc-affy (>= 1.41.3), r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/Biostrings/
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
drwxr-xr-x root/root 0 2022-11-21 06:11 ./
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/
-rw-r--r-- root/root 2714 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/DESCRIPTION
-rw-r--r-- root/root 5248 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/INDEX
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/
-rw-r--r-- root/root 7920 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/Rd.rds
-rw-r--r-- root/root 339 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/data.rds
-rw-r--r-- root/root 131 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/features.rds
-rw-r--r-- root/root 8116 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
-rw-r--r-- root/root 6484 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/links.rds
-rw-r--r-- root/root 2485 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
-rw-r--r-- root/root 2027 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/package.rds
-rw-r--r-- root/root 455 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/Meta/vignette.rds
-rw-r--r-- root/root 11224 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/NAMESPACE
-rw-r--r-- root/root 17344 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/NEWS
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/R/
-rw-r--r-- root/root 1058 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/R/Biostrings
-rw-r--r-- root/root 1796854 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
-rw-r--r-- root/root 16751 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/
-rw-r--r-- root/root 712 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
-rw-r--r-- root/root 635 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
-rw-r--r-- root/root 628 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
-rw-r--r-- root/root 620 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
-rw-r--r-- root/root 648 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
-rw-r--r-- root/root 4533 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
-rw-r--r-- root/root 673 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/PAM120.rda
-rw-r--r-- root/root 635 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/PAM250.rda
-rw-r--r-- root/root 767 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/PAM30.rda
-rw-r--r-- root/root 736 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/PAM40.rda
-rw-r--r-- root/root 740 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/PAM70.rda
-rw-r--r-- root/root 6445 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/phiX174Phage.rda
-rw-r--r-- root/root 37751 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/srPhiX174.rda
-rw-r--r-- root/root 66419 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/
-rw-r--r-- root/root 3614 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
-rw-r--r-- root/root 8514 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
-rw-r--r-- root/root 121832 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
-rw-r--r-- root/root 9790 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
-rw-r--r-- root/root 68749 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
-rw-r--r-- root/root 5239 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
-rw-r--r-- root/root 10512 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rnw
-rw-r--r-- root/root 98851 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.pdf
-rw-r--r-- root/root 25135 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.R
-rw-r--r-- root/root 53393 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
-rw-r--r-- root/root 223879 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
-rw-r--r-- root/root 3805 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/index.html
-rw-r--r-- root/root 3664 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.R
-rw-r--r-- root/root 9923 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.Rnw
-rw-r--r-- root/root 227831 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.pdf
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/
-rw-r--r-- root/root 6313 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
-rw-r--r-- root/root 440 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/README
-rw-r--r-- root/root 1633 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/Sc.fa
-rw-r--r-- root/root 1653 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/Sp.fa
-rw-r--r-- root/root 11525633 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
-rw-r--r-- root/root 169 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
-rw-r--r-- root/root 495 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
-rw-r--r-- root/root 667 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
-rw-r--r-- root/root 37906 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
-rw-r--r-- root/root 31740 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
-rw-r--r-- root/root 27326 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa
-rw-r--r-- root/root 8082 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/
-rw-r--r-- root/root 42062 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/AnIndex
-rw-r--r-- root/root 410539 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/Biostrings.rdb
-rw-r--r-- root/root 1729 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/Biostrings.rdx
-rw-r--r-- root/root 6761 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/aliases.rds
-rw-r--r-- root/root 791 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/help/paths.rds
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/html/
-rw-r--r-- root/root 90038 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/html/00Index.html
-rw-r--r-- root/root 1735 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/html/R.css
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/include/
-rw-r--r-- root/root 6264 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h
-rw-r--r-- root/root 6554 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h
-rw-r--r-- root/root 4006 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/include/_Biostrings_stubs.c
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/libs/
-rw-r--r-- root/root 199204 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/libs/Biostrings.so
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/
-rw-r--r-- root/root 10984 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R
-rw-r--r-- root/root 1929 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_XString.R
-rw-r--r-- root/root 1468 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_XStringSet-io.R
-rw-r--r-- root/root 3929 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_XStringSet.R
-rw-r--r-- root/root 4434 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_XStringSetList.R
-rw-r--r-- root/root 6229 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_findPalindromes.R
-rw-r--r-- root/root 8250 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
-rw-r--r-- root/root 4411 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_matchPDict.R
-rw-r--r-- root/root 10331 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_pairwiseAlignment.R
-rw-r--r-- root/root 1398 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_seqinfo-methods.R
-rw-r--r-- root/root 5381 2022-11-21 06:11 ./usr/lib/R/site-library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/share/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-21 06:11 ./usr/share/doc/r-bioc-biostrings/
-rw-r--r-- root/root 823 2022-11-21 06:11 ./usr/share/doc/r-bioc-biostrings/changelog.Debian.gz
-rw-r--r-- root/root 1989 2022-11-01 18:40 ./usr/share/doc/r-bioc-biostrings/changelog.gz
-rw-r--r-- root/root 5326 2022-11-21 06:11 ./usr/share/doc/r-bioc-biostrings/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 43704
Build-Time: 160
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 526
Job: r-bioc-biostrings_2.66.0-1
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 706
Source-Version: 2.66.0-1
Space: 43704
Status: successful
Version: 2.66.0-1
--------------------------------------------------------------------------------
Finished at 2022-12-06T05:45:14Z
Build needed 00:11:46, 43704k disk space