r-bioc-biostrings →
2.64.1-1 →
armhf → 2022-08-25 05:35:37
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-biostrings 2.64.1-1 (armhf) Thu, 25 Aug 2022 05:24:53 +0000 |
+==============================================================================+
Package: r-bioc-biostrings
Version: 2.64.1-1
Source Version: 2.64.1-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-5935b8a4-e4e1-4f77-97cf-5473ff55ee61' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 10s (2706 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.4 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.64.1-1 (dsc) [2258 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.64.1-1 (tar) [12.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-biostrings 2.64.1-1 (diff) [4820 B]
Fetched 12.4 MB in 1s (8331 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-i4iblw/r-bioc-biostrings-2.64.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-i4iblw' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-uPs0nu/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-uPs0nu/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-uPs0nu/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8997 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (71.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12795 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.30.1), r-bioc-xvector (>= 0.29.2), r-bioc-genomeinfodb, r-cran-crayon
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.30.1), r-bioc-xvector (>= 0.29.2), r-bioc-genomeinfodb, r-cran-crayon
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biostrings-dummy' in '/<<BUILDDIR>>/resolver-uPs0nu/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biostrings-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Sources [580 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ Packages [663 B]
Fetched 2576 B in 0s (12.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-biostrings build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dmsetup dwz
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libapparmor1 libarchive-zip-perl libargon2-1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcryptsetup12 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl libdevmapper1.02.1
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu71 libio-html-perl libip4tc2 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjson-c5 libkmod2 liblapack-dev
liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev libregexp-ipv6-perl librtmp1 libscalar-list-utils-perl
libsm6 libssh2-1 libssl3 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsystemd-shared
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector
r-bioc-zlibbioc r-cran-bitops r-cran-crayon r-cran-rcurl systemd ucf unzip
x11-common xauth xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc icu-doc
liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings
r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2
r-bioc-annotate r-bioc-genomicalignments r-bioc-genomicfeatures
r-bioc-bsgenome r-cran-runit r-bioc-biocstyle r-cran-knitr
r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph
r-cran-data.table r-cran-rstudioapi r-cran-xml systemd-container
systemd-homed systemd-userdbd systemd-boot libfido2-1 libtss2-esys-3.0.2-0
libtss2-mu0 libtss2-rc0 policykit-1
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat
r-cran-withr r-cran-mockery default-dbus-system-bus | dbus-system-bus
systemd-timesyncd | time-daemon libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dmsetup dwz
file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libapparmor1 libarchive-zip-perl libargon2-1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcryptsetup12 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl libdevmapper1.02.1
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu71 libio-html-perl libip4tc2 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjson-c5 libkmod2 liblapack-dev
liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev libregexp-ipv6-perl librtmp1 libscalar-list-utils-perl
libsm6 libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsystemd-shared libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops
r-cran-crayon r-cran-rcurl sbuild-build-depends-r-bioc-biostrings-dummy
systemd ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libssl3 zlib1g
2 upgraded, 190 newly installed, 0 to remove and 14 not upgraded.
Need to get 162 MB of archives.
After this operation, 454 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uPs0nu/apt_archive ./ sbuild-build-depends-r-bioc-biostrings-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-1 [91.8 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-1 [134 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-1 [40.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.5-2 [1635 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-2 [225 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-1 [237 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220630-3 [51.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libapparmor1 armhf 3.0.7-1 [98.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libip4tc2 armhf 1.8.8-1 [32.9 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libsystemd-shared armhf 251.3-1+rpi1 [1526 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf systemd armhf 251.3-1+rpi1 [2985 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4.1 [84.1 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-2 [1364 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-2 [1372 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-8 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-8 [510 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9 [195 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-8 [1219 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9 [1070 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.48.0-2 [72.1 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.84.0-2 [321 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.3-1 [1233 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-7+rpi1 [238 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.9+ds-1 [214 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.9+ds-1 [68.6 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.9+ds-1 [58.3 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.1-2 [27.7 MB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.1.0-7+rpi1 [285 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.1.0-7+rpi1 [51.0 MB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.1.0-3+rpi1 [1428 B]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1.2-1.2 [120 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1+b2 [208 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1+b2 [200 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1+b2 [53.7 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1+b2 [637 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.1-2 [4488 B]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-2 [13.5 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.12-1 [93.7 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.37-1 [80.9 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-2 [11.0 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2 [10.9 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-2 [13.1 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2 [24.5 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.62-1 [61.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2 [14.3 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-2 [8044 B]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-2 [8500 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-2 [12.0 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2 [13.3 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1 [18.2 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-2 [43.0 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-2 [11.6 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.84.0-2 [315 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.42.0-1 [589 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.34.0-1 [2015 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.30.1-1 [2214 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.8+dfsg-1 [776 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.8-1 [11.5 MB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.32.3-1 [3892 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.42.0+dfsg-1 [9136 B]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.36.0-1 [617 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.1-1 [162 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking systemd (251.3-1+rpi1) ...
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Unpacking zlib1g:armhf (1:1.2.11.dfsg-4.1) over (1:1.2.11.dfsg-4+b2) ...
Setting up zlib1g:armhf (1:1.2.11.dfsg-4.1) ...
Selecting previously unselected package libuchardet0:armhf.
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Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
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Preparing to unpack .../001-groff-base_1.22.4-8_armhf.deb ...
Unpacking groff-base (1.22.4-8) ...
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Unpacking bsdextrautils (2.38.1-1) ...
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Unpacking man-db (2.10.2-2) ...
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Unpacking openssl (3.0.5-2) ...
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Unpacking file (1:5.41-4) ...
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Unpacking gettext-base (0.21-8) ...
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Selecting previously unselected package libmodule-runtime-perl.
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Selecting previously unselected package libpackage-stash-perl.
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Selecting previously unselected package libsub-exporter-progressive-perl.
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Selecting previously unselected package libdevel-globaldestruction-perl.
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Selecting previously unselected package libalgorithm-c3-perl.
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Selecting previously unselected package libsub-exporter-perl.
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Selecting previously unselected package libdist-checkconflicts-perl.
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Selecting previously unselected package libmodule-runtime-conflicts-perl.
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Selecting previously unselected package libsub-name-perl:armhf.
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Selecting previously unselected package libpackage-deprecationmanager-perl.
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Selecting previously unselected package libpackage-stash-xs-perl:armhf.
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Selecting previously unselected package libmoose-perl:armhf.
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Selecting previously unselected package libcurl3-gnutls:armhf.
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Setting up libip4tc2:armhf (1.8.8-1) ...
Setting up libexpat1:armhf (2.4.8-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-14) ...
Setting up libpipeline1:armhf (1.5.6-2) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up libfile-which-perl (1.27-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libapparmor1:armhf (3.0.7-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up liblerc4:armhf (4.0.0+ds-1) ...
Setting up bsdextrautils (2.38.1-1) ...
Setting up libpcre16-3:armhf (2:8.39-14) ...
Setting up libdynaloader-functions-perl (0.003-2) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-2) ...
Setting up libglib2.0-0:armhf (2.72.3-1) ...
No schema files found: doing nothing.
Setting up libscalar-list-utils-perl (1:1.62-1) ...
Setting up libargon2-1:armhf (0~20171227-0.3) ...
Setting up unzip (6.0-27) ...
Setting up libdebhelper-perl (13.9) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up libssl3:armhf (3.0.5-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-1) ...
Setting up libnghttp2-14:armhf (1.48.0-2) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up libdeflate0:armhf (1.12-1) ...
Setting up gettext-base (0.21-8) ...
Setting up m4 (1.4.19-1) ...
Setting up libencode-locale-perl (1.05-2) ...
Setting up file (1:5.41-4) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.40-1+b2) ...
Setting up libsub-install-perl (0.928-2) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.40-1+b2) ...
Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libswitch-perl (2.17-3) ...
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Setting up libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libpng16-16:armhf (1.6.37-5) ...
Setting up libpcre32-3:armhf (2:8.39-14) ...
Setting up libvariable-magic-perl (0.62-2) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-8) ...
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Setting up pkg-config (0.29.2-1) ...
Setting up fonts-dejavu-core (2.37-2) ...
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Setting up libwebp7:armhf (1.2.2-2) ...
Setting up libfdisk1:armhf (2.38.1-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Setting up libpcre2-posix3:armhf (10.40-1+b2) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libssh2-1:armhf (1.10.0-3+b1) ...
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Setting up libtiff5:armhf (4.4.0-4) ...
Setting up openssl (3.0.5-2) ...
Setting up libbsd0:armhf (0.11.6-1) ...
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Setting up libjson-c5:armhf (0.16-1) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.12-1) ...
Setting up libblas-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libkmod2:armhf (30+20220630-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
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Setting up gettext (0.21-8) ...
Setting up libpcre2-dev:armhf (10.40-1+b2) ...
Setting up libtool (2.4.7-4) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up fontconfig-config (2.13.1-4.4) ...
Setting up libpng-dev:armhf (1.6.37-5) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up libcurl3-gnutls:armhf (7.84.0-2) ...
Setting up libgfortran-12-dev:armhf (12.1.0-7+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1.2-1.2) ...
Setting up libdevel-callchecker-perl (0.008-1+b3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gfortran-12 (12.1.0-7+rpi1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libsystemd-shared:armhf (251.3-1+rpi1) ...
Setting up libdata-optlist-perl (0.112-1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libcurl4:armhf (7.84.0-2) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1+b1) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.37-1) ...
Setting up libeval-closure-perl (0.14-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b2) ...
Setting up gfortran (4:12.1.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up libdevmapper1.02.1:armhf (2:1.02.185-1) ...
Setting up dmsetup (2:1.02.185-1) ...
Setting up libcryptsetup12:armhf (2:2.5.0-2) ...
Setting up systemd (251.3-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
Setting up man-db (2.10.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up debhelper (13.9) ...
Processing triggers for sgml-base (1.30) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up fontconfig (2.13.1-4.4) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Processing triggers for libc-bin (2.33-8+rpi1) ...
Setting up libpango-1.0-0:armhf (1.50.9+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.9+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.9+ds-1) ...
Setting up r-base-core (4.2.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.1-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.8-1) ...
Setting up r-bioc-biocgenerics (0.42.0-1) ...
Setting up r-base-dev (4.2.1-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.42.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.34.0-1) ...
Setting up r-bioc-iranges (2.30.1-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rcurl (1.98-1.8+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.32.3-1) ...
Setting up r-bioc-xvector (0.36.0-1) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.33-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.9 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.35-3 dmsetup_2:1.02.185-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-8 gettext-base_0.21-8 gfortran_4:12.1.0-3+rpi1 gfortran-12_12.1.0-7+rpi1 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2 libbinutils_2.38.90.20220713-2+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-2 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl3-gnutls_7.84.0-2 libcurl4_7.84.0-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9 libdeflate0_1.12-1 libdevel-callchecker-perl_0.008-1+b3 libdevel-globaldestruction-perl_0.14-2 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.185-1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-2 libelf1_0.187-1 libencode-locale-perl_1.05-2 libeval-closure-perl_0.14-2 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran-12-dev_12.1.0-7+rpi1 libgfortran5_12.1.0-7+rpi1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_2.7.4-1+b1 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.37-1 libice6_2:1.0.10-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libip4tc2_1.8.8-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.12+dfsg-2 liblerc4_4.0.0+ds-1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2200-1+b1 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-2 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnghttp2-14_1.48.0-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-2 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1 libpam-cap_1:2.44-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpango-1.0-0_1.50.9+ds-1 libpangocairo-1.0-0_1.50.9+ds-1 libpangoft2-1.0-0_1.50.9+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2 libparams-util-perl_1.102-1+b2 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-1+b2 libpcre2-32-0_10.40-1+b2 libpcre2-8-0_10.40-1+b2 libpcre2-dev_10.40-1+b2 libpcre2-posix3_10.40-1+b2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-5 libpng16-16_1.6.37-5 libpsl5_0.21.0-1.2 libreadline-dev_8.1.2-1.2 libreadline8_8.1.2-1.2 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-6+b1 libsasl2-modules-db_2.1.28+dfsg-6+b1 libscalar-list-utils-perl_1:1.62-1 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-2 libsub-identify-perl_0.14-2 libsub-install-perl_0.928-2 libsub-name-perl_0.26-2 libsub-override-perl_0.09-3 libswitch-perl_2.17-3 libsystemd-shared_251.3-1+rpi1 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2.1 libtirpc-dev_1.3.2-2.1 libtirpc3_1.3.2-2.1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-1 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 liburi-perl_5.12-1 libuuid1_2.38.1-1 libvariable-magic-perl_0.62-2 libwebp7_1.2.2-2 libwww-curl-perl_4.17-7+b2 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.4-1 libxml2_2.9.14+dfsg-1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.1-2 r-base-dev_4.2.1-2 r-bioc-biocgenerics_0.42.0-1 r-bioc-genomeinfodb_1.32.3-1 r-bioc-genomeinfodbdata_1.2.8-1 r-bioc-iranges_2.30.1-1 r-bioc-s4vectors_0.34.0-1 r-bioc-xvector_0.36.0-1 r-bioc-zlibbioc_1.42.0+dfsg-1 r-cran-bitops_1.0-7-1 r-cran-crayon_1.5.1-1 r-cran-rcurl_1.98-1.8+dfsg-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.3-1+rpi1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.XelxEEg4/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 23 05:54:00 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-biostrings_2.64.1-1.dsc
dpkg-source: info: extracting r-bioc-biostrings in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biostrings_2.64.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.64.1-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-5935b8a4-e4e1-4f77-97cf-5473ff55ee61
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biostrings
dpkg-buildpackage: info: source version 2.64.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-biostrings/ -a -O--buildsystem=R
I: R Package: Biostrings Version: 2.64.1
I: Building using R version 4.2.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 23 Aug 2022 07:48:36 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 23 Aug 2022 07:48:36 +0200'"
* installing *source* package 'Biostrings' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c BAB_class.c -o BAB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c BitMatrix.c -o BitMatrix.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MIndex_class.c -o MIndex_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SparseList_utils.c -o SparseList_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XStringSetList_class.c -o XStringSetList_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XStringSet_class.c -o XStringSet_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XString_class.c -o XString_class.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_needwunsQS.c -o align_needwunsQS.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c align_utils.c -o align_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c find_palindromes.c -o find_palindromes.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gtestsim.c -o gtestsim.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inject_code.c -o inject_code.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c letter_frequency.c -o letter_frequency.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowlevel_matching.c -o lowlevel_matching.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_PWM.c -o match_PWM.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern.c -o match_pattern.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_indels.c -o match_pattern_indels.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict.c -o match_pdict.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_pdict_utils.c -o match_pdict_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match_reporting.c -o match_reporting.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matchprobes.c -o matchprobes.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pmatchPattern.c -o pmatchPattern.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c read_fasta_files.c -o read_fasta_files.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c read_fastq_files.c -o read_fastq_files.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceAt.c -o replaceAt.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replace_letter_at.c -o replace_letter_at.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c strutils.c -o strutils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c translate.c -o translate.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c xscat.c -o xscat.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/00LOCK-r-bioc-biostrings-2.64.1/00new/Biostrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'twoWayAlphabetFrequencyByQuality' with signature '"QualityScaledXStringSet"': no definition for class "QualityScaledXStringSet"
Creating a new generic function for 'strsplit' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'pattern' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Biostrings)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.30.1)
I: Using r-bioc-xvector for Depends:XVector (>= 0.29.2)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.13.14)
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg18
W: Cannot find a debian package for Suggests:drosophila2probe
W: Cannot find a debian package for Suggests:hgu95av2probe
W: Cannot find a debian package for Suggests:hgu133aprobe
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.3.14)
W: Cannot find a debian package for Suggests:hgu95av2cdf
I: Using r-bioc-affy for Suggests:affy (>= 1.41.3)
W: Cannot find a debian package for Suggests:affydata (>= 1.11.5)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-crayon for Imports:crayon
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: BioConductor API version: r-api-bioc-3.15
I: Use r-bioc-biostrings as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.64.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.64.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-biostrings_2.64.1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-biostrings_2.64.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-08-25T05:35:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biostrings_2.64.1-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Tue, 23 Aug 2022 07:48:36 +0200
Source: r-bioc-biostrings
Binary: r-bioc-biostrings r-bioc-biostrings-dbgsym
Architecture: armhf
Version: 2.64.1-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
r-bioc-biostrings (2.64.1-1) unstable; urgency=medium
.
* New upstream version
* dh-update-R to update Build-Depends (routine-update)
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Checksums-Sha256:
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43543e65d02e2db7da998a6e68e36defafe66f6ab9a58399668b414f57e676dc 10524 r-bioc-biostrings_2.64.1-1_armhf.buildinfo
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Files:
2bb60eee8796603a3dc9a7c665cd62b2 233608 debug optional r-bioc-biostrings-dbgsym_2.64.1-1_armhf.deb
d51753b9fd164183294cc9de35aa36a7 10524 gnu-r optional r-bioc-biostrings_2.64.1-1_armhf.buildinfo
ddb7acf9f9a2e8fb6e60c4e033a779ef 13931844 gnu-r optional r-bioc-biostrings_2.64.1-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biostrings-dbgsym_2.64.1-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 233608 bytes: control archive=544 bytes.
406 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biostrings-dbgsym
Source: r-bioc-biostrings
Version: 2.64.1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 271
Depends: r-bioc-biostrings (= 2.64.1-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-biostrings
Build-Ids: e26ace2291880d45c66f825e87c943944b693813
drwxr-xr-x root/root 0 2022-08-23 05:48 ./
drwxr-xr-x root/root 0 2022-08-23 05:48 ./usr/
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r-bioc-biostrings_2.64.1-1_armhf.deb
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new Debian package, version 2.0.
size 13931844 bytes: control archive=3004 bytes.
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7199 bytes, 81 lines md5sums
Package: r-bioc-biostrings
Version: 2.64.1-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 15147
Depends: r-base-core (>= 4.2.1-2), r-api-4.0, r-api-bioc-3.15, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.30.1), r-bioc-xvector (>= 0.29.2), r-bioc-genomeinfodb, r-cran-crayon, libc6 (>= 2.7)
Suggests: r-bioc-bsgenome (>= 1.13.14), r-bioc-genomicfeatures (>= 1.3.14), r-bioc-affy (>= 1.41.3), r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/Biostrings/
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
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+------------------------------------------------------------------------------+
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Build Architecture: armhf
Build-Space: 43884
Build-Time: 145
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 474
Job: r-bioc-biostrings_2.64.1-1
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 640
Source-Version: 2.64.1-1
Space: 43884
Status: successful
Version: 2.64.1-1
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Finished at 2022-08-25T05:35:33Z
Build needed 00:10:40, 43884k disk space