r-bioc-biostrings →
2.48.0-2+b1 →
armhf → 2018-06-14 13:37:27
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-biostrings 2.48.0-2+b1 (armhf) Thu, 14 Jun 2018 13:02:16 +0000 |
+==============================================================================+
Package: r-bioc-biostrings
Version: 2.48.0-2+b1
Source Version: 2.48.0-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-0f6b2436-30ab-4be0-8cb5-e11629b277ce' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.4 MB in 26s (905 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-biostrings.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.7 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-biostrings 2.48.0-2 (dsc) [2245 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-biostrings 2.48.0-2 (tar) [12.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-biostrings 2.48.0-2 (diff) [4476 B]
Fetched 12.7 MB in 1s (9115 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-aEuneI/r-bioc-biostrings-2.48.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-aEuneI' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-iD1dEI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-iD1dEI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-iD1dEI/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2976 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-iD1dEI/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15544 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.15.6), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.24), r-bioc-xvector (>= 0.19.8)
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.15.6), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.24), r-bioc-xvector (>= 0.19.8)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biostrings-dummy' in '/<<BUILDDIR>>/resolver-iD1dEI/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biostrings-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Sources [557 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Packages [644 B]
Fetched 2534 B in 1s (3623 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-iD1dEI/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-biostrings build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
e2fsprogs-l10n libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-7 dctrl-tools
debhelper default-libmysqlclient-dev dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core g++-7 gcc gcc-7 gcc-7-base gdal-data gettext gettext-base
gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base
hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
libasan4 libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0
libbz2-dev libcairo2 libcharls-dev libcharls1 libcilkrts5 libcroco3
libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
libdapclient6v5 libdapserver7v5 libdatrie1 libelf1 libepsilon-dev
libepsilon1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfreexl-dev libfreexl1 libfribidi0 libfyba-dev
libfyba0 libgcc-7-dev libgdal-dev libgdal20 libgeos-3.6.2 libgeos-c1v5
libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-7-dev libgfortran4
libgif-dev libgif7 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
libgraphite2-dev libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libice6 libicu-dev libicu-le-hb-dev
libicu-le-hb0 libicu60 libisl19 libjbig-dev libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjson-c-dev libk5crypto3 libkeyutils1
libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1
libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev
liblapack3 liblcms2-2 libltdl-dev libltdl7 liblzma-dev libmagic-mgc
libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libminizip-dev libminizip1 libmpdec2 libncurses-dev
libncurses5-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnspr4 libnss3
libodbc1 libogdi3.2 libogdi3.2-dev libopenjp2-7 libopenjp2-7-dev
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler74
libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
libreadline-dev libreadline7 librtmp1 libsigsegv2 libsm6 libspatialite-dev
libspatialite7 libsqlite3-0 libsqlite3-dev libssh2-1 libstdc++-7-dev
libsuperlu-dev libsuperlu5 libsz2 libtcl8.6 libthai-data libthai0
libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
libtool libubsan0 liburiparser-dev liburiparser1 libwebp-dev libwebp6
libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6
libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
m4 man-db mime-support mysql-common odbcinst odbcinst1debian2 pkg-config
po-debconf proj-data python3 python3-distutils python3-lib2to3
python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-bioc-xvector ucf
unixodbc-dev unzip uuid-dev x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cpp-doc gcc-7-locales debtags dh-make gcc-7-doc libstdc++6-7-dbg
gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg libtsan0-dbg
libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc
libgfortran4-dbg libcoarrays-dev groff libitpp-dev liblapack-doc
libboost-doc libboost1.62-doc libboost-atomic1.62-dev
libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin
libglib2.0-doc libgraphite2-utils krb5-doc krb5-user libhdf4-doc hdf4-tools
libhdf5-doc icu-doc liblcms2-utils libtool-doc liblzma-doc ncurses-doc
netcdf-bin netcdf-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin
ogdi-bin libfreetype6-dev postgresql-doc-10 proj-bin readline-doc
sqlite3-doc libstdc++-7-doc libsuperlu-doc tcl8.6 tk8.6 gcj-jdk
libxerces-c-doc m4-doc apparmor less www-browser libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges
r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2
r-bioc-annotate r-bioc-genomicalignments r-bioc-genomicfeatures
r-bioc-summarizedexperiment r-cran-matrix r-bioc-delayedarray
r-bioc-shortread r-bioc-graph r-cran-data.table r-bioc-biostrings
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl proj-bin shared-mime-info
xdg-user-dirs krb5-locales libpng-tools poppler-data publicsuffix
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit
r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
default-libmysqlclient-dev dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext
gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libarchive-zip-perl libarmadillo-dev libarmadillo8 libarpack2 libarpack2-dev
libblas-dev libblas3 libboost-dev libboost1.62-dev libbsd0 libbz2-dev
libcairo2 libcharls-dev libcharls1 libcroco3 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libelf1 libepsilon-dev libepsilon1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreexl-dev
libfreexl1 libfribidi0 libfyba-dev libfyba0 libgdal-dev libgdal20
libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2
libgfortran-7-dev libgfortran4 libgif-dev libgif7 libgirepository-1.0-1
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b
libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libisl19
libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjson-c-dev libk5crypto3 libkeyutils1 libkml-dev libkmlbase1
libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libltdl-dev
libltdl7 liblzma-dev libmagic-mgc libmagic1 libmariadbclient-dev
libmariadbclient-dev-compat libmariadbclient18 libminizip-dev libminizip1
libmpdec2 libncurses-dev libncurses5-dev libnetcdf-dev libnetcdf13
libnghttp2-14 libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev
libopenjp2-7 libopenjp2-7-dev libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpoppler-dev libpoppler-private-dev libpoppler74 libpopt0 libpq-dev libpq5
libproj-dev libproj13 libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libreadline-dev
librtmp1 libsigsegv2 libsm6 libspatialite-dev libspatialite7 libsqlite3-dev
libssh2-1 libsuperlu-dev libsuperlu5 libsz2 libtcl8.6 libthai-data libthai0
libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
libtool liburiparser-dev liburiparser1 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db
mime-support mysql-common odbcinst odbcinst1debian2 pkg-config po-debconf
proj-data python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors r-bioc-xvector
sbuild-build-depends-r-bioc-biostrings-dummy ucf unixodbc-dev unzip uuid-dev
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-7 g++-7 gcc gcc-7 gcc-7-base libasan4 libcilkrts5 libgcc-7-dev
libreadline7 libsqlite3-0 libstdc++-7-dev libubsan0
13 upgraded, 246 newly installed, 0 to remove and 36 not upgraded.
Need to get 168 MB/168 MB of archives.
After this operation, 574 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iD1dEI/apt_archive ./ sbuild-build-depends-r-bioc-biostrings-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-1 [131 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.5-1 [292 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.5-1 [683 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.5-9 [565 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.5-9 [1374 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libreadline7 armhf 7.0-5 [130 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libsqlite3-0 armhf 3.24.0-1 [521 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.5-9 [1651 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.5-9 [229 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libisl19 armhf 0.19-1 [427 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.3.0-19 [5593 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.3.0-19 [5488 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.3.0-19 [5139 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.3.0-19 [301 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.3.0-19 [106 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.3.0-19 [35.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.3.0-19 [1506 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.3.0-19 [671 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.3.0-19 [187 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038 [67.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:7.3.0-3+rpi1 [19.2 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:7.3.0-3+rpi1 [5192 B]
Get:50 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-2 [20.0 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-2 [12.0 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-2 [402 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.11-2 [73.5 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.2 [994 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf mysql-common all 5.8+1.0.4 [7276 B]
Get:71 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.29-6+b1 [685 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:76 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-2 [451 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-1 [107 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-1 [98.3 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-3 [575 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.60.0-2 [281 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 0.19.7-2 [44.1 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-2 [168 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.11-1 [34.6 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-2 [50.2 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.0-1 [158 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.0-1 [53.2 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.0-1 [43.3 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-5 [224 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.0-5 [23.6 MB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-19 [232 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-19 [5459 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.3.0-3+rpi1 [1436 B]
Get:122 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20180210-4 [936 B]
Get:126 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.7.6-1+b1 [584 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.7.6-1+b1 [591 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [77.6 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [142 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.7.6-1+b1 [597 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5-4 [79.0 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5-4 [144 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.11-2 [22.2 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.7.6-1+b1 [879 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.0-5 [4484 B]
Get:156 http://172.17.0.1/private buster-staging/main armhf dh-r all 20180601 [32.0 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.0+dfsg-1 [729 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 1.0.2-1 [21.3 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libsz2 armhf 1.0.2-1 [6640 B]
Get:161 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.5.0+real-2+b2 [80.6 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libsuperlu5 armhf 5.2.1+dfsg1-3 [125 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libarmadillo8 armhf 1:8.400.0+dfsg-3 [83.7 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.5.0+real-2+b2 [87.0 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:8.400.0+dfsg-3 [344 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5.1 [7003 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:173 http://172.17.0.1/private buster-staging/main armhf libcharls1 armhf 1.1.0+dfsg-2 [45.1 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-2 [21.6 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.60.0-2 [279 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.60.0-2 [352 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libdap25 armhf 3.19.1-2 [469 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libdapserver7v5 armhf 3.19.1-2 [122 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libdapclient6v5 armhf 3.19.1-2 [180 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32-0.1 [91.3 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.19.1-2 [760 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-2 [36.5 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-2 [46.8 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.5-3 [123 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-1 [31.7 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-1 [30.2 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-3 [97.8 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-3 [425 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libgeos-3.6.2 armhf 3.6.2-1 [612 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libgeos-c1v5 armhf 3.6.2-1 [264 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.1.0-1 [7002 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.1.0-1 [182 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-2+b2 [66.2 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-2 [234 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libminizip1 armhf 1.1-8 [18.3 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.8.5-1 [34.7 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-5 [42.0 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-5 [147 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-5 [67.4 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-5 [44.5 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-5 [21.9 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-5 [28.5 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-1 [344 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-1+b1 [193 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.3.0-1 [139 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-1 [117 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.19-3+rpi1 [90.0 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.37.1-1 [933 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libpoppler74 armhf 0.63.0-2 [1225 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 10.4-2 [148 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libqhull7 armhf 2015.2-4 [175 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libspatialite7 armhf 4.3.0a-5+b2 [1231 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.1+debian-2+b2 [710 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.0+dfsg-1 [4842 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.6.2-1 [282 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf libjbig-dev armhf 2.1-3.1+b2 [27.7 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.9-5 [100 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libtiff5-dev armhf 4.0.9-5 [337 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.9-5 [96.3 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-2+b2 [93.5 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-1 [80.5 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-2 [310 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.8.5-1 [17.8 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-5 [940 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.1.0-1 [225 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-1+b1 [38.3 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.63.0-2 [22.5 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.63.0-2 [187 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 10.4-2 [145 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.1+debian-2+b2 [1486 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.4+dfsg-3+rpi1 [209 kB]
Get:252 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.0+dfsg-1 [6211 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.26.0-3 [641 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.2-1+b1 [1802 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.10-1+b1 [2127 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.20.0-2+b1 [592 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up fonts-dejavu-core (2.37-1) ...
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Setting up libgeos-3.6.2:armhf (3.6.2-1) ...
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No schema files found: doing nothing.
Setting up mysql-common (5.8+1.0.4) ...
update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
Setting up unzip (6.0-21) ...
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Setting up ucf (3.0038) ...
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Processing triggers for libc-bin (2.27-3+rpi1) ...
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Setting up libcharls-dev:armhf (1.1.0+dfsg-2) ...
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Processing triggers for systemd (238-4) ...
Setting up libltdl7:armhf (2.4.6-2.1) ...
Setting up libjson-c-dev:armhf (0.12.1-1.3) ...
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Setting up libtcl8.6:armhf (8.6.8+dfsg-4) ...
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Setting up libxdmcp6:armhf (1:1.1.2-3) ...
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Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
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Creating config file /etc/papersize with new version
Setting up libpython3.6-stdlib:armhf (3.6.5-9) ...
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Setting up fontconfig-config (2.13.0-5) ...
Setting up python3.6 (3.6.5-9) ...
Setting up libodbc1:armhf (2.3.6-0.1) ...
Setting up libltdl-dev:armhf (2.4.6-2.1) ...
Setting up libasan4:armhf (7.3.0-19) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
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Setting up libubsan0:armhf (7.3.0-19) ...
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Setting up libaec-dev:armhf (1.0.2-1) ...
Setting up libnss3:armhf (2:3.37.1-1) ...
Setting up libproj13:armhf (5.1.0-1) ...
Setting up libgeos-dev (3.6.2-1) ...
Setting up libharfbuzz0b:armhf (1.7.6-1+b1) ...
Setting up autoconf (2.69-11) ...
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Setting up cpp-7 (7.3.0-19) ...
Setting up libqhull-dev:armhf (2015.2-4) ...
Setting up libstdc++-7-dev:armhf (7.3.0-19) ...
Setting up libncurses5-dev:armhf (6.1+20180210-4) ...
Setting up libogdi3.2 (3.2.1+ds-1+b1) ...
Setting up libkmlxsd1:armhf (1.3.0-5) ...
Setting up libblas3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libgeotiff2:armhf (1.4.2-2+b2) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-7-dev:armhf (7.3.0-19) ...
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up liburiparser-dev (0.8.5-1) ...
Setting up libkmldom1:armhf (1.3.0-5) ...
Setting up default-libmysqlclient-dev:armhf (1.0.4) ...
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libxcb1:armhf (1.13-1) ...
Setting up libharfbuzz-gobject0:armhf (1.7.6-1+b1) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up cpp (4:7.3.0-3+rpi1) ...
Setting up libtiff-dev (4.0.9-5) ...
Setting up libfontconfig1:armhf (2.13.0-5) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libgeotiff-dev:armhf (1.4.2-2+b2) ...
Setting up libproj-dev:armhf (5.1.0-1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-render0:armhf (1.13-1) ...
Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up python3 (3.6.5-3) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-5.1) ...
Setting up gcc-7 (7.3.0-19) ...
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up g++-7 (7.3.0-19) ...
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.5-1) ...
Setting up gcc (4:7.3.0-3+rpi1) ...
Setting up libpoppler74:armhf (0.63.0-2) ...
Setting up libsuperlu5:armhf (5.2.1+dfsg1-3) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libogdi3.2-dev (3.2.1+ds-1+b1) ...
Setting up libwebp-dev:armhf (0.6.1-2) ...
Setting up libkmlengine1:armhf (1.3.0-5) ...
Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-3) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.7.6-1+b1) ...
Setting up libxcb-shm0:armhf (1.13-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libarpack2:armhf (3.5.0+real-2+b2) ...
Setting up gfortran-7 (7.3.0-19) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libboost-dev:armhf (1.62.0.1+b8) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.6.5-4) ...
Setting up python3-distutils (3.6.5-4) ...
Setting up fontconfig (2.13.0-5) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2.1) ...
Setting up gfortran (4:7.3.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up libpoppler-dev:armhf (0.63.0-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.56.1-2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-4+b2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libkmlconvenience1:armhf (1.3.0-5) ...
Setting up libglib2.0-dev:armhf (2.56.1-2) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libarmadillo8 (1:8.400.0+dfsg-3) ...
Setting up libpq5:armhf (10.4-2) ...
Setting up libkmlregionator1:armhf (1.3.0-5) ...
Setting up libpango-1.0-0:armhf (1.42.0-1) ...
Setting up libarpack2-dev:armhf (3.5.0+real-2+b2) ...
Setting up libarmadillo-dev (1:8.400.0+dfsg-3) ...
Setting up libcairo2:armhf (1.15.10-3) ...
Setting up libpoppler-private-dev:armhf (0.63.0-2) ...
Setting up libpq-dev (10.4-2) ...
Setting up libcurl3-gnutls:armhf (7.60.0-2) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libcurl4:armhf (7.60.0-2) ...
Setting up libkml-dev:armhf (1.3.0-5) ...
Setting up libpangoft2-1.0-0:armhf (1.42.0-1) ...
Setting up libnetcdf13:armhf (1:4.6.1-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.60.0-2) ...
Setting up libnetcdf-dev (1:4.6.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.0-1) ...
Setting up libhdf4-alt-dev (4.2.13-2) ...
Setting up dh-autoreconf (19) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.041-2) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up libharfbuzz-icu0:armhf (1.7.6-1+b1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.0-5) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.26.0-3) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libspatialite7:armhf (4.3.0a-5+b2) ...
Setting up icu-devtools (60.2-6) ...
Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ...
Setting up libxerces-c3.2:armhf (3.2.1+debian-2+b2) ...
Setting up libdap25:armhf (3.19.1-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libicu-dev (60.2-6) ...
Setting up r-base-dev (3.5.0-5) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7) ...
Setting up libdapclient6v5:armhf (3.19.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libdapserver7v5:armhf (3.19.1-2) ...
Setting up libharfbuzz-dev:armhf (1.7.6-1+b1) ...
Setting up libxerces-c-dev (3.2.1+debian-2+b2) ...
Setting up libdap-dev:armhf (3.19.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libgdal20 (2.3.0+dfsg-1) ...
Setting up debhelper (11.3.2) ...
Setting up dh-r (20180601) ...
Setting up libgdal-dev (2.3.0+dfsg-1) ...
Setting up r-bioc-s4vectors (0.18.2-1+b1) ...
Setting up r-bioc-iranges (2.14.10-1+b1) ...
Setting up r-bioc-xvector (0.20.0-2+b1) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Processing triggers for systemd (238-4) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-3+rpi1 linux-libc-dev_4.16.5-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dctrl-tools_2.24-2 debconf_1.5.66 debhelper_11.3.2 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-r_20180601 dh-strip-nondeterminism_0.041-2 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-3+rpi1 gdal-data_2.3.0+dfsg-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gfortran_4:7.3.0-3+rpi1 gfortran-7_7.3.0-19 gir1.2-glib-2.0_1.56.1-1 gir1.2-harfbuzz-0.0_1.7.6-1+b1 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hdf5-helpers_1.10.0-patch1+docs-4+b2 hostname_3.20 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libarmadillo-dev_1:8.400.0+dfsg-3 libarmadillo8_1:8.400.0+dfsg-3 libarpack2_3.5.0+real-2+b2 libarpack2-dev_3.5.0+real-2+b2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-3+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-15+rpi1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.32-0.1 libboost-dev_1.62.0.1+b8 libboost1.62-dev_1.62.0+dfsg-5.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3+rpi1 libcharls-dev_1.1.0+dfsg-2 libcharls1_1.1.0+dfsg-2 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libcurl3-gnutls_7.60.0-2 libcurl4_7.60.0-2 libcurl4-gnutls-dev_7.60.0-2 libdap-dev_3.19.1-2 libdap25_3.19.1-2 libdapclient6v5_3.19.1-2 libdapserver7v5_3.19.1-2 libdatrie1_0.2.11-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libelf1_0.170-0.4 libepsilon-dev_0.9.2+dfsg-2 libepsilon1_0.9.2+dfsg-2 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-2 libfontconfig1_2.13.0-5 libfreetype6_2.8.1-2 libfreexl-dev_1.0.5-1 libfreexl1_1.0.5-1 libfribidi0_0.19.7-2 libfyba-dev_4.1.1-3 libfyba0_4.1.1-3 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-3+rpi1 libgcrypt20_1.8.2-2 libgdal-dev_2.3.0+dfsg-1 libgdal20_2.3.0+dfsg-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgeos-3.6.2_3.6.2-1 libgeos-c1v5_3.6.2-1 libgeos-dev_3.6.2-1 libgeotiff-dev_1.4.2-2+b2 libgeotiff2_1.4.2-2+b2 libgfortran-7-dev_7.3.0-19 libgfortran4_7.3.0-19 libgif-dev_5.1.4-3 libgif7_5.1.4-3 libgirepository-1.0-1_1.56.1-1 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 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libkmldom1_1.3.0-5 libkmlengine1_1.3.0-5 libkmlregionator1_1.3.0-5 libkmlxsd1_1.3.0-5 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 liblapack-dev_3.8.0-1 liblapack3_3.8.0-1 liblcms2-2_2.9-1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmariadbclient-dev_1:10.1.29-6+b1 libmariadbclient-dev-compat_1:10.1.29-6+b1 libmariadbclient18_1:10.1.29-6+b1 libminizip-dev_1.1-8 libminizip1_1.1-8 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-4 libncurses5_6.1+20180210-4 libncurses5-dev_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnetcdf-dev_1:4.6.1-1 libnetcdf13_1:4.6.1-1 libnettle6_3.4-1 libnghttp2-14_1.32.0-1 libnpth0_1.5-3 libnspr4_2:4.19-3+rpi1 libnss3_2:3.37.1-1 libodbc1_2.3.6-0.1 libogdi3.2_3.2.1+ds-1+b1 libogdi3.2-dev_3.2.1+ds-1+b1 libopenjp2-7_2.3.0-1 libopenjp2-7-dev_2.3.0-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpango-1.0-0_1.42.0-1 libpangocairo-1.0-0_1.42.0-1 libpangoft2-1.0-0_1.42.0-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-5 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libpoppler-dev_0.63.0-2 libpoppler-private-dev_0.63.0-2 libpoppler74_0.63.0-2 libpopt0_1.16-11 libpq-dev_10.4-2 libpq5_10.4-2 libprocps7_2:3.3.15-1 libproj-dev_5.1.0-1 libproj13_5.1.0-1 libpsl5_0.20.2-1 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.5-9 libpython3.6-stdlib_3.6.5-9 libqhull-dev_2015.2-4 libqhull-r7_2015.2-4 libqhull7_2015.2-4 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-2 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32-0.1 libspatialite-dev_4.3.0a-5+b2 libspatialite7_4.3.0a-5+b2 libsqlite3-0_3.24.0-1 libsqlite3-dev_3.24.0-1 libss2_1.44.2-1 libssh2-1_1.8.0-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-3+rpi1 libsuperlu-dev_5.2.1+dfsg1-3 libsuperlu5_5.2.1+dfsg1-3 libsystemd0_238-4 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff-dev_4.0.9-5 libtiff5_4.0.9-5 libtiff5-dev_4.0.9-5 libtiffxx5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtk8.6_8.6.8-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 liburiparser-dev_0.8.5-1 liburiparser1_0.8.5-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.1+debian-2+b2 libxerces-c3.2_3.2.1+debian-2+b2 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxml2-dev_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 libzstd-dev_1.3.4+dfsg-3+rpi1 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.5-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.60 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 mysql-common_5.8+1.0.4 nano_2.9.5-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1-1 netbase_5.4 odbcinst_2.3.6-0.1 odbcinst1debian2_2.3.6-0.1 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-5 perl-base_5.26.2-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-1 proj-data_5.1.0-1 python3_3.6.5-3 python3-distutils_3.6.5-4 python3-lib2to3_3.6.5-4 python3-minimal_3.6.5-3 python3.6_3.6.5-9 python3.6-minimal_3.6.5-9 r-base-core_3.5.0-5 r-base-dev_3.5.0-5 r-bioc-biocgenerics_0.26.0-3 r-bioc-iranges_2.14.10-1+b1 r-bioc-s4vectors_0.18.2-1+b1 r-bioc-xvector_0.20.0-2+b1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_238-4 unixodbc-dev_2.3.6-0.1 unzip_6.0-21 util-linux_2.31.1-0.5 uuid-dev_2.32-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat May 5 22:15:30 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-biostrings_2.48.0-2.dsc
dpkg-source: info: extracting r-bioc-biostrings in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biostrings_2.48.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.48.0-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.48.0-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-0f6b2436-30ab-4be0-8cb5-e11629b277ce
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biostrings
dpkg-buildpackage: info: source version 2.48.0-2+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build r-bioc-biostrings-2.48.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: Add Depends of DEP8 test to Recommends: r-cran-runit
I: R Package: Biostrings Version: 2.48.0
I: Building using R version 3.5.0-5
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 06 May 2018 00:12:19 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 06 May 2018 00:12:19 +0200'"
* installing *source* package 'Biostrings' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BAB_class.c -o BAB_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BitMatrix.c -o BitMatrix.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MIndex_class.c -o MIndex_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseList_utils.c -o SparseList_utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSetList_class.c -o XStringSetList_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_class.c -o XStringSet_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_io.c -o XStringSet_io.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XString_class.c -o XString_class.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_needwunsQS.c -o align_needwunsQS.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_utils.c -o align_utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c find_palindromes.c -o find_palindromes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gtestsim.c -o gtestsim.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inject_code.c -o inject_code.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c letter_frequency.c -o letter_frequency.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowlevel_matching.c -o lowlevel_matching.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_PWM.c -o match_PWM.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern.c -o match_pattern.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_indels.c -o match_pattern_indels.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict.c -o match_pdict.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_utils.c -o match_pdict_utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_reporting.c -o match_reporting.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmatchPattern.c -o pmatchPattern.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replaceAt.c -o replaceAt.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replace_letter_at.c -o replace_letter_at.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strutils.c -o strutils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iXuhKy/r-base-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xscat.c -o xscat.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XStringSet_io.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'strsplit' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Biostrings)
W: Ignoring specified R dependency: R (>= 2.8.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.6)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.17.25)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.13.24)
I: Using r-bioc-xvector for Depends:XVector (>= 0.19.8)
I: Using r-cran-runit for Recommends:runit
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.13.14)
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
I: Using libgdal-dev for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
I: Using libgdal-dev for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg18
I: Using libgdal-dev for Suggests:BSgenome.Hsapiens.UCSC.hg18
W: Cannot find a debian package for Suggests:drosophila2probe
I: Using libgdal-dev for Suggests:drosophila2probe
W: Cannot find a debian package for Suggests:hgu95av2probe
I: Using libgdal-dev for Suggests:hgu95av2probe
W: Cannot find a debian package for Suggests:hgu133aprobe
I: Using libgdal-dev for Suggests:hgu133aprobe
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.3.14)
W: Cannot find a debian package for Suggests:hgu95av2cdf
I: Using libgdal-dev for Suggests:hgu95av2cdf
I: Using r-bioc-affy for Suggests:affy (>= 1.41.3)
W: Cannot find a debian package for Suggests:affydata (>= 1.11.5)
I: Using libgdal-dev for Suggests:affydata (>= 1.11.5)
I: Using r-cran-runit for Suggests:RUnit
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
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dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
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dh_installudev -a -O--buildsystem=R
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dh_bugfiles -a -O--buildsystem=R
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dh_lintian -a -O--buildsystem=R
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dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.48.0-2+b1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.48.0-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-biostrings_2.48.0-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-biostrings-2.48.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-06-14T13:36:42Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biostrings_2.48.0-2+b1_armhf.changes:
--------------------------------------------
Format: 1.8
Date: Sun, 06 May 2018 00:12:19 +0200
Source: r-bioc-biostrings (2.48.0-2)
Binary: r-bioc-biostrings
Binary-Only: yes
Architecture: armhf
Version: 2.48.0-2+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
r-bioc-biostrings (2.48.0-2+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
38fe600f5ca73b3b82e3d20c68a4f4a0 196284 debug optional r-bioc-biostrings-dbgsym_2.48.0-2+b1_armhf.deb
c49ac7e27556f76c345224e32f8b0032 11835 gnu-r optional r-bioc-biostrings_2.48.0-2+b1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biostrings-dbgsym_2.48.0-2+b1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 196284 bytes: control archive=548 bytes.
423 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biostrings-dbgsym
Source: r-bioc-biostrings (2.48.0-2)
Version: 2.48.0-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 239
Depends: r-bioc-biostrings (= 2.48.0-2+b1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-biostrings
Build-Ids: 11551a79d32cc7a7b64736ab8c7bcdfebf906a6e
drwxr-xr-x root/root 0 2018-05-05 22:12 ./
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/lib/
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/lib/debug/.build-id/11/
-rw-r--r-- root/root 234212 2018-05-05 22:12 ./usr/lib/debug/.build-id/11/551a79d32cc7a7b64736ab8c7bcdfebf906a6e.debug
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/share/
drwxr-xr-x root/root 0 2018-05-05 22:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-05-05 22:12 ./usr/share/doc/r-bioc-biostrings-dbgsym -> r-bioc-biostrings
r-bioc-biostrings_2.48.0-2+b1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 14095984 bytes: control archive=3044 bytes.
857 bytes, 16 lines control
7257 bytes, 82 lines md5sums
Package: r-bioc-biostrings
Source: r-bioc-biostrings (2.48.0-2)
Version: 2.48.0-2+b1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 15125
Depends: r-base-core (>= 3.5.0-5), r-api-3.5, r-bioc-biocgenerics (>= 0.15.6), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.24), r-bioc-xvector (>= 0.19.8), libc6 (>= 2.7)
Recommends: r-cran-runit
Suggests: r-bioc-bsgenome (>= 1.13.14), libgdal-dev (>= 1.11.5), r-bioc-genomicfeatures (>= 1.3.14), r-bioc-affy (>= 1.41.3)
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/Biostrings/
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
drwxr-xr-x root/root 0 2018-05-05 22:12 ./
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 44136
Build-Time: 402
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1608
Job: r-bioc-biostrings_2.48.0-2
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 2066
Source-Version: 2.48.0-2
Space: 44136
Status: successful
Version: 2.48.0-2+b1
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Finished at 2018-06-14T13:36:42Z
Build needed 00:34:26, 44136k disc space