r-bioc-biostrings →
2.42.1-1 →
armhf → 2016-12-16 08:01:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-bioc-biostrings 2.42.1-1 (armhf) Fri, 16 Dec 2016 07:45:43 +0000 |
+==============================================================================+
Package: r-bioc-biostrings
Version: 2.42.1-1
Source Version: 2.42.1-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-c5ffc46a-cc9f-4476-bbb7-73c7f7133d12' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9594 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.5 MB]
Fetched 21.1 MB in 23s (900 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
Need to get 12.7 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.42.1-1 (dsc) [2228 B]
Get:2 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.42.1-1 (tar) [12.7 MB]
Get:3 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.42.1-1 (diff) [4008 B]
Fetched 12.7 MB in 2s (4958 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-pC9VSF/r-bioc-biostrings-2.42.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-pC9VSF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-eIX8Ie/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-eIX8Ie/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3375 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 774 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 774 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-xvector (>= 0.12.0), r-bioc-iranges (>= 2.6.0), r-bioc-s4vectors (>= 0.10.1)
Filtered Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-xvector (>= 0.12.0), r-bioc-iranges (>= 2.6.0), r-bioc-s4vectors (>= 0.10.1)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biostrings-dummy' in '/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-biostrings-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Sources [541 B]
Get:5 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ Packages [622 B]
Fetched 2496 B in 0s (3956 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-biostrings build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
cpp dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gcc gettext gettext-base
gfortran gfortran-6 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libffi6
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-6-dev libgfortran3 libglib2.0-0 libgnutls30 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses5
libncurses5-dev libncursesw5 libnettle6 libnghttp2-14 libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libreadline-dev librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.0.2 libssl1.1
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
libtinfo-dev libtinfo5 libtk8.6 libtool libunistring0 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors
r-bioc-xvector ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts cpp-doc debtags dh-make gcc-multilib manpages-dev flex
bison gdb gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man
liblapack-doc gnutls-bin krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk less www-browser
libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genomicranges
r-bioc-genomicfeatures r-bioc-genomicalignments r-cran-runit r-cran-matrix
r-bioc-shortread r-bioc-graph r-cran-data.table r-bioc-biostrings gvfs-bin
Recommended packages:
curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libgpm2 libpng-tools libsasl2-modules libltdl-dev
xml-core libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl3 libdatrie1 libexpat1 libffi6 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0
libgnutls30 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4
libice6 libicu-dev libicu57 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnettle6 libnghttp2-14 libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libreadline-dev librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.0.2 libssl1.1
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
libtinfo-dev libtk8.6 libtool libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl po-debconf r-base-core
r-base-dev r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors
r-bioc-xvector sbuild-build-depends-r-bioc-biostrings-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp gcc libncurses5 libncursesw5 libtinfo5
5 upgraded, 132 newly installed, 0 to remove and 13 not upgraded.
Need to get 85.1 MB/86.5 MB of archives.
After this operation, 253 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-eIX8Ie/apt_archive ./ sbuild-build-depends-r-bioc-biostrings-dummy 0.invalid.0 [830 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libncurses5 armhf 6.0+20161126-1 [74.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libtinfo5 armhf 6.0+20161126-1 [288 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libncursesw5 armhf 6.0+20161126-1 [93.4 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-2 [971 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.26-2 [263 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.7 [271 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.7 [313 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.7 [402 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libpcrecpp0v5 armhf 2:8.39-2 [149 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxft2 armhf 2.3.2-1 [48.3 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+18 [251 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.6-7 [760 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.15~beta1-1 [57.6 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15~beta1-1 [114 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15~beta1-1 [263 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15~beta1-1 [131 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-1 [66.7 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-1 [97.9 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libldap-common all 2.4.44+dfsg-2+rpi1 [84.5 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-2+rpi1 [195 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.1.0c-2 [703 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20161130 [203 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf cdbs all 0.4.150 [82.6 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf cpp armhf 4:6.2.1-1 [18.5 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf gcc armhf 4:6.2.1-1 [5188 B]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf unzip armhf 6.0-20 [142 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.1-5+rpi1 [166 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1.1 [686 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.17.0-1 [70.1 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.50.1-1 [251 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libthai-data all 0.1.25-2 [165 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libdatrie1 armhf 0.2.10-4 [32.8 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libthai0 armhf 0.1.25-2 [48.7 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libpango-1.0-0 armhf 1.40.3-3 [300 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.9-2 [62.9 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.2.7-1+b1 [589 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libpangoft2-1.0-0 armhf 1.40.3-3 [196 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libpangocairo-1.0-0 armhf 1.40.3-3 [186 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libtcl8.6 armhf 8.6.6+dfsg-1 [861 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.7-1 [209 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libtk8.6 armhf 8.6.6-1 [659 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf r-base-core armhf 3.3.2-1 [20.8 MB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.1-5+rpi1 [199 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.1-5+rpi1 [5414 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.2.1-1 [1340 B]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20161126-1 [65.3 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20161126-1 [245 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 7.0-1 [109 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.1-2 [181 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.5.1-2 [56.1 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf libpcre16-3 armhf 2:8.39-2 [235 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf libpcre32-3 armhf 2:8.39-2 [227 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf libpcre3-dev armhf 2:8.39-2 [568 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf libpng-dev armhf 1.6.26-2 [235 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf liblzma-dev armhf 5.2.2-1.2 [284 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-5 [156 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-5 [15.8 MB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf r-base-dev all 3.3.2-1 [4292 B]
Get:127 http://172.17.0.1/private stretch-staging/main armhf dh-r all 20161130 [7740 B]
Get:128 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocgenerics all 0.20.0-1 [483 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf r-bioc-s4vectors armhf 0.12.0-1 [1104 kB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf r-bioc-iranges armhf 2.8.1-1 [1429 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf r-bioc-xvector armhf 0.14.0-1 [327 kB]
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Setting up cdbs (0.4.150) ...
Setting up libncurses5:armhf (6.0+20161126-1) ...
Setting up cpp (4:6.2.1-1) ...
Setting up libnettle6:armhf (3.3-1) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up libjpeg62-turbo:armhf (1:1.5.1-2) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.17.0-1) ...
Setting up libpng16-16:armhf (1.6.26-2) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libldap-common (2.4.44+dfsg-2+rpi1) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libgfortran3:armhf (6.2.1-5+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up libgfortran-6-dev:armhf (6.2.1-5+rpi1) ...
Setting up unzip (6.0-20) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up libtinfo-dev:armhf (6.0+20161126-1) ...
Setting up dctrl-tools (2.24-2) ...
Setting up libdatrie1:armhf (0.2.10-4) ...
Setting up libtiff5:armhf (4.0.7-1) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up gcc (4:6.2.1-1) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up ucf (3.0036) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up libtasn1-6:armhf (4.9-4) ...
Setting up libmagic-mgc (1:5.29-1) ...
Setting up libmagic1:armhf (1:5.29-1) ...
Setting up libhogweed4:armhf (3.3-1) ...
Setting up libgraphite2-3:armhf (1.3.9-2) ...
Setting up libncurses5-dev:armhf (6.0+20161126-1) ...
Setting up libssl1.0.2:armhf (1.0.2j-4) ...
Setting up libpixman-1-0:armhf (0.34.0-1) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libssh2-1:armhf (1.7.0-1) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libssl1.1:armhf (1.1.0c-2) ...
Processing triggers for systemd (232-6) ...
Setting up openssl (1.1.0c-2) ...
Setting up libreadline-dev:armhf (7.0-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-2) ...
Setting up libpcre32-3:armhf (2:8.39-2) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up icu-devtools (57.1-5) ...
Setting up libpcre16-3:armhf (2:8.39-2) ...
Setting up libtcl8.6:armhf (8.6.6+dfsg-1) ...
Setting up libthai-data (0.1.25-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.1-2) ...
Setting up liblzma-dev:armhf (5.2.2-1.2) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+18) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up xdg-utils (1.1.1-1) ...
Setting up ca-certificates (20161130) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Setting up libx11-data (2:1.6.3-1) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up gfortran-6 (6.2.1-5+rpi1) ...
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-2) ...
Setting up fontconfig-config (2.11.0-6.7) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up libharfbuzz0b:armhf (1.2.7-1+b1) ...
Setting up autoconf (2.69-10) ...
Setting up libthai0:armhf (0.1.25-2) ...
Setting up libicu-dev (57.1-5) ...
Setting up file (1:5.29-1) ...
Setting up libkrb5support0:armhf (1.15~beta1-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libjpeg-dev (1:1.5.1-2) ...
Setting up libp11-kit0:armhf (0.23.2-5) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up man-db (2.7.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.26-2) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.2.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfontconfig1:armhf (2.11.0-6.7) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libk5crypto3:armhf (1.15~beta1-1) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libgnutls30:armhf (3.5.6-7) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libkrb5-3:armhf (1.15~beta1-1) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.15~beta1-1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:armhf (1.40.3-3) ...
Setting up libcairo2:armhf (1.14.6-1.1) ...
Setting up libcurl3:armhf (7.50.1-1) ...
Setting up libtk8.6:armhf (8.6.6-1) ...
Setting up libpangoft2-1.0-0:armhf (1.40.3-3) ...
Setting up libpangocairo-1.0-0:armhf (1.40.3-3) ...
Setting up r-base-core (3.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.3.2-1) ...
Setting up r-bioc-biocgenerics (0.20.0-1) ...
Setting up r-bioc-s4vectors (0.12.0-1) ...
Setting up r-bioc-iranges (2.8.1-1) ...
Setting up r-bioc-xvector (0.14.0-1) ...
Setting up dh-autoreconf (12) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up debhelper (10.2.2) ...
Setting up dh-r (20161130) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Processing triggers for systemd (232-6) ...
Processing triggers for ca-certificates (20161130) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20161130 cdbs_0.4.150 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.2.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 dctrl-tools_2.24-2 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-r_20161130 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20161106-1 fontconfig_2.11.0-6.7 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.2.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.2.1-1 gfortran-6_6.2.1-5+rpi1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-5 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 kbd_2.0.3-2 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libapparmor1_2.10.95-6 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.29-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcairo2_1.14.6-1.1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 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libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.4+dfsg1-2.1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-2 manpages_4.08-1 mawk_1.3.3-17 mount_2.29-1 multiarch-support_2.24-7+rpi1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 netbase_5.3 openssl_1.1.0c-2 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 psmisc_22.21-2.1 r-base-core_3.3.2-1 r-base-dev_3.3.2-1 r-bioc-biocgenerics_0.20.0-1 r-bioc-iranges_2.8.1-1 r-bioc-s4vectors_0.12.0-1 r-bioc-xvector_0.14.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 ucf_3.0036 udev_232-6 unzip_6.0-20 util-linux_2.29-1 x11-common_1:7.7+18 xauth_1:1.0.9-1 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 5 12:24:41 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-biostrings_2.42.1-1.dsc
dpkg-source: info: extracting r-bioc-biostrings in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-biostrings_2.42.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.42.1-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-c5ffc46a-cc9f-4476-bbb7-73c7f7133d12
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-biostrings
dpkg-buildpackage: info: source version 2.42.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-biostrings-2.42.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: Biostrings Version: 2.42.1
I: Building using R version 3.3.2-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Mon, 05 Dec 2016 13:05:07 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 05 Dec 2016 13:05:07 +0100'"
* installing *source* package 'Biostrings' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BAB_class.c -o BAB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BitMatrix.c -o BitMatrix.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MIndex_class.c -o MIndex_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseList_utils.c -o SparseList_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSetList_class.c -o XStringSetList_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_class.c -o XStringSet_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_io.c -o XStringSet_io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XString_class.c -o XString_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_needwunsQS.c -o align_needwunsQS.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_utils.c -o align_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c find_palindromes.c -o find_palindromes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gtestsim.c -o gtestsim.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inject_code.c -o inject_code.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c letter_frequency.c -o letter_frequency.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowlevel_matching.c -o lowlevel_matching.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_PWM.c -o match_PWM.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern.c -o match_pattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_indels.c -o match_pattern_indels.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict.c -o match_pdict.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_utils.c -o match_pdict_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_reporting.c -o match_reporting.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmatchPattern.c -o pmatchPattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replaceAt.c -o replaceAt.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replace_letter_at.c -o replace_letter_at.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strutils.c -o strutils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xscat.c -o xscat.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XStringSet_io.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Biostrings)
W: Ignoring specified R dependency: R (>= 2.8.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.6)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.11.1)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.5.27)
I: Using r-bioc-xvector for Depends:XVector (>= 0.11.6)
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.13.14)
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11)
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg18
W: Cannot find a debian package for Suggests:drosophila2probe
W: Cannot find a debian package for Suggests:hgu95av2probe
W: Cannot find a debian package for Suggests:hgu133aprobe
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.3.14)
W: Cannot find a debian package for Suggests:hgu95av2cdf
I: Using r-bioc-affy for Suggests:affy (>= 1.41.3)
W: Cannot find a debian package for Suggests:affydata (>= 1.11.5)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-xvector for Imports:XVector
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_systemd_enable -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_systemd_start -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.42.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.42.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-biostrings_2.42.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-biostrings-2.42.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-12-16T08:00:34Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biostrings_2.42.1-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Mon, 05 Dec 2016 13:05:07 +0100
Source: r-bioc-biostrings
Binary: r-bioc-biostrings
Architecture: armhf
Version: 2.42.1-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
r-bioc-biostrings (2.42.1-1) unstable; urgency=medium
.
* New upstream version
* debhelper 10
* d/watch: version=4
* Removed unused lintian override
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Files:
7b924c47aa8df67ff07bf45ee67fedca 197736 debug extra r-bioc-biostrings-dbgsym_2.42.1-1_armhf.deb
3b2fb5110e2d42a8ce8f5704fb8cf935 7425 gnu-r optional r-bioc-biostrings_2.42.1-1_armhf.buildinfo
5c533c28853ea34bfff94cca5ac45bda 13522122 gnu-r optional r-bioc-biostrings_2.42.1-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biostrings-dbgsym_2.42.1-1_armhf.deb
-------------------------------------------
new debian package, version 2.0.
size 197736 bytes: control archive=495 bytes.
465 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biostrings-dbgsym
Source: r-bioc-biostrings
Version: 2.42.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 240
Depends: r-bioc-biostrings (= 2.42.1-1)
Section: debug
Priority: extra
Homepage: https://bioconductor.org/packages/Biostrings/
Description: Debug symbols for r-bioc-biostrings
Auto-Built-Package: debug-symbols
Build-Ids: 817fc346fd8171532289d5f4c2b5a06f4754382c
drwxr-xr-x root/root 0 2016-12-05 12:05 ./
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root 235012 2016-12-05 12:05 ./usr/lib/debug/.build-id/81/7fc346fd8171532289d5f4c2b5a06f4754382c.debug
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/share/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-12-05 12:05 ./usr/share/doc/r-bioc-biostrings-dbgsym -> r-bioc-biostrings
r-bioc-biostrings_2.42.1-1_armhf.deb
------------------------------------
new debian package, version 2.0.
size 13522122 bytes: control archive=3069 bytes.
783 bytes, 14 lines control
7079 bytes, 80 lines md5sums
Package: r-bioc-biostrings
Version: 2.42.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14302
Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biocgenerics (>= 0.15.6), r-bioc-s4vectors (>= 0.11.1), r-bioc-iranges (>= 2.5.27), r-bioc-xvector (>= 0.11.6), libc6 (>= 2.7)
Suggests: r-bioc-bsgenome (>= 1.13.14), r-bioc-genomicfeatures (>= 1.3.14), r-bioc-affy (>= 1.41.3), r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/Biostrings/
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
drwxr-xr-x root/root 0 2016-12-05 12:05 ./
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-12-05 12:05 ./usr/lib/R/
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| Summary |
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Build Architecture: armhf
Build-Space: 42732
Build-Time: 204
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 629
Job: r-bioc-biostrings_2.42.1-1
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 891
Source-Version: 2.42.1-1
Space: 42732
Status: successful
Version: 2.42.1-1
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Finished at 2016-12-16T08:00:34Z
Build needed 00:14:51, 42732k disc space