r-bioc-biostrings →
2.38.4-1 →
armhf → 2016-03-02 22:32:51
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| r-bioc-biostrings 2.38.4-1 (armhf) 02 Mar 2016 22:20 |
+==============================================================================+
Package: r-bioc-biostrings
Version: 2.38.4-1
Source Version: 2.38.4-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-GQcRSk/r-bioc-biostrings-2.38.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-GQcRSk' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-782e51b9-dda1-4d7e-98c6-4a5b27e39cc4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8771 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.6 MB in 22s (866 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
Need to get 12.7 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.38.4-1 (dsc) [2185 B]
Get:2 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.38.4-1 (tar) [12.7 MB]
Get:3 http://172.17.0.1/private stretch-staging/main r-bioc-biostrings 2.38.4-1 (diff) [3920 B]
Fetched 12.7 MB in 1s (8956 kB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-eGX7x0/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Packages [527 B]
Ign:4 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Sources
Get:4 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Sources [214 B]
Ign:5 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Packages
Get:5 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ Packages [527 B]
Reading package lists...
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 41 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-eGX7x0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12661 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-xvector (>= 0.10.0), r-bioc-iranges (>= 2.4.7)
Filtered Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-xvector (>= 0.10.0), r-bioc-iranges (>= 2.4.7)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-biostrings-dummy' in '/<<BUILDDIR>>/resolver-SRjnkr/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Sources [256 B]
Get:5 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Packages [572 B]
Ign:4 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Sources [256 B]
Get:5 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ Packages [572 B]
Reading package lists...
Reading package lists...
Install r-bioc-biostrings build dependencies (apt-based resolver)
-----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autotools-dev bsdmainutils ca-certificates cdbs debhelper
dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core
gettext gettext-base gfortran gfortran-5 groff-base intltool-debian
libarchive-zip-perl libblas-common libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libffi6
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls30 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu55 libidn11
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 liblzma-dev libmagic1 libncurses5 libncurses5-dev libncursesw5
libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
libreadline-dev libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db
libsm6 libssh2-1 libssl1.0.2 libtasn1-6 libtcl8.6 libthai-data libthai0
libtiff5 libtimedate-perl libtinfo-dev libtinfo5 libtk8.6 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db openssl
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-iranges
r-bioc-s4vectors r-bioc-xvector ucf unzip x11-common xdg-utils zip
zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation devscripts dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
libgfortran3-dbg groff liblapack-doc-man liblapack-doc gnutls-bin krb5-doc
krb5-user liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 less www-browser
libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin
Recommended packages:
curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libgpm2 libsasl2-modules xml-core
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autotools-dev bsdmainutils ca-certificates cdbs debhelper
dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core
gettext gettext-base gfortran gfortran-5 groff-base intltool-debian
libarchive-zip-perl libblas-common libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libffi6
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls30 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu55 libidn11
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev libnettle6 libnghttp2-14
libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
libtinfo-dev libtk8.6 libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxss1 libxt6 man-db openssl po-debconf r-base-core r-base-dev
r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-bioc-xvector
sbuild-build-depends-r-bioc-biostrings-dummy ucf unzip x11-common xdg-utils
zip zlib1g-dev
The following packages will be upgraded:
libncurses5 libncursesw5 libpng12-0 libtinfo5
4 upgraded, 116 newly installed, 0 to remove and 37 not upgraded.
Need to get 83.7 MB/83.7 MB of archives.
After this operation, 252 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-SRjnkr/apt_archive ./ sbuild-build-depends-r-bioc-biostrings-dummy 0.invalid.0 [810 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libtinfo5 armhf 6.0+20160213-1 [281 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libncurses5 armhf 6.0+20160213-1 [74.8 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libncursesw5 armhf 6.0+20160213-1 [93.3 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libpng12-0 armhf 1.2.54-3 [160 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.1-0.1 [411 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0035 [68.5 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.35-1 [1064 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.3 [273 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.3 [402 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libpcrecpp0v5 armhf 2:8.38-1 [148 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2 [122 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.11.1-1 [40.9 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libxft2 armhf 2.3.2-1 [48.3 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+13 [251 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2f-2 [883 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-3 [44.4 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.9-2 [711 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-5 [259 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-5 [130 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2f-2 [663 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf cdbs all 0.4.130 [76.4 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.015-1 [11.0 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
Get:66 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-8+rpi1 [153 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-8+rpi1 [183 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-8+rpi1 [23.7 MB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.33.6-1 [454 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.11.1-1 [17.0 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.11.1-1 [11.5 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1 [688 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.7.1-2 [63.2 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d-1+b1 [54.4 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.47.0-1 [247 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libdatrie1 armhf 0.2.10-2 [32.5 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.5-1 [61.5 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.0.1-1+b1 [501 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.4.2-2 [104 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.4.2-2 [413 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.4.2-2 [51.7 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.0-2 [1355 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf liblzma-dev armhf 5.1.1alpha+20120614-2.1 [248 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20160213-1 [66.0 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20160213-1 [154 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libthai-data all 0.1.24-2 [163 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libthai0 armhf 0.1.24-2 [46.6 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libpango-1.0-0 armhf 1.38.1-1 [292 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libpangoft2-1.0-0 armhf 1.38.1-1 [229 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libpangocairo-1.0-0 armhf 1.38.1-1 [218 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libpcre16-3 armhf 2:8.38-1 [229 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libpcre32-3 armhf 2:8.38-1 [222 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libpcre3-dev armhf 2:8.38-1 [556 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libpng12-dev armhf 1.2.54-3 [233 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libreadline6-dev armhf 6.3-8+b3 [105 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 6.3-8+b3 [958 B]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libtcl8.6 armhf 8.6.4+dfsg-3 [855 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-1 [201 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libtk8.6 armhf 8.6.4+dfsg-3 [664 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf unzip armhf 6.0-20 [142 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf r-base-core armhf 3.2.3-6 [20.2 MB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf r-base-dev all 3.2.3-6 [4292 B]
Get:117 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocgenerics all 0.16.0-1 [474 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf r-bioc-s4vectors armhf 0.8.11-1 [809 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf r-bioc-iranges armhf 2.4.7-1 [1470 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf r-bioc-xvector armhf 0.10.0-1 [327 kB]
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Processing triggers for libc-bin (2.21-7) ...
Processing triggers for systemd (228-6) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up libpng12-0:armhf (1.2.54-3) ...
Setting up libfreetype6:armhf (2.6.1-0.1) ...
Setting up ucf (3.0035) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
Setting up libfontconfig1:armhf (2.11.0-6.3) ...
Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0v5:armhf (2:8.38-1) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libxcb1:armhf (1.11.1-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up x11-common (1:7.7+13) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libssl1.0.2:armhf (1.0.2f-2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.7-3) ...
Setting up libgnutls30:armhf (3.4.9-2) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-5) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-5) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-5) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up autotools-dev (20150820.1) ...
Setting up openssl (1.0.2f-2) ...
Setting up ca-certificates (20160104) ...
Setting up cdbs (0.4.130) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.015-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libgfortran3:armhf (5.3.1-8+rpi1) ...
Setting up libgfortran-5-dev:armhf (5.3.1-8+rpi1) ...
Setting up gfortran-5 (5.3.1-8+rpi1) ...
Setting up gfortran (4:5.3.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up libpixman-1-0:armhf (0.33.6-1) ...
Setting up libxcb-render0:armhf (1.11.1-1) ...
Setting up libxcb-shm0:armhf (1.11.1-1) ...
Setting up libcairo2:armhf (1.14.6-1) ...
Setting up libnghttp2-14:armhf (1.7.1-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Setting up libcurl3:armhf (7.47.0-1) ...
Setting up libdatrie1:armhf (0.2.10-2) ...
Setting up libgraphite2-3:armhf (1.3.5-1) ...
Setting up libharfbuzz0b:armhf (1.0.1-1+b1) ...
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.2-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.4.2-2) ...
Setting up libjpeg-dev (1:1.4.2-2) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2.1) ...
Setting up libtinfo-dev:armhf (6.0+20160213-1) ...
Setting up libncurses5-dev:armhf (6.0+20160213-1) ...
Setting up libthai-data (0.1.24-2) ...
Setting up libthai0:armhf (0.1.24-2) ...
Setting up libpango-1.0-0:armhf (1.38.1-1) ...
Setting up libpangoft2-1.0-0:armhf (1.38.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.38.1-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre16-3:armhf (2:8.38-1) ...
Setting up libpcre32-3:armhf (2:8.38-1) ...
Setting up libpcre3-dev:armhf (2:8.38-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libpng12-dev:armhf (1.2.54-3) ...
Setting up libreadline6-dev:armhf (6.3-8+b3) ...
Setting up libreadline-dev:armhf (6.3-8+b3) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-3) ...
Setting up libtiff5:armhf (4.0.6-1) ...
Setting up libtk8.6:armhf (8.6.4+dfsg-3) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up zip (3.0-11) ...
Setting up unzip (6.0-20) ...
Setting up xdg-utils (1.1.1-1) ...
Setting up r-base-core (3.2.3-6) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.2.3-6) ...
Setting up r-bioc-biocgenerics (0.16.0-1) ...
Setting up r-bioc-s4vectors (0.8.11-1) ...
Setting up r-bioc-iranges (2.4.7-1) ...
Setting up r-bioc-xvector (0.10.0-1) ...
Setting up debhelper (9.20160115) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Processing triggers for libc-bin (2.21-7) ...
Processing triggers for systemd (228-6) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-8+rpi1 gcc-5_5.3.1-8+rpi1 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20160104 cdbs_0.4.130 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-8+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-8+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-8+rpi1 gcc-5-base_5.3.1-8+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-8+rpi1 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libasan2_5.3.1-8+rpi1 libatomic1_5.3.1-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblas-common_3.6.0-2 libblas-dev_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcairo2_1.14.6-1 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-8+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.47.0-1 libdatrie1_0.2.10-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libfontconfig1_2.11.0-6.3 libfreetype6_2.6.1-0.1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-8+rpi1 libgcc1_1:5.3.1-8+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-8+rpi1 libgfortran3_5.3.1-8+rpi1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.9-2 libgomp1_5.3.1-8+rpi1 libgpg-error0_1.21-1 libgraphite2-3_1.3.5-1 libgssapi-krb5-2_1.13.2+dfsg-5 libharfbuzz0b_1.0.1-1+b1 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjbig0_2.1-3.1 libjpeg-dev_1:1.4.2-2 libjpeg62-turbo_1:1.4.2-2 libjpeg62-turbo-dev_1:1.4.2-2 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-7+rpi1 libkmod2_22-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 liblapack-dev_3.6.0-2 liblapack3_3.6.0-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblz4-1_0.0~r131-1 liblzma-dev_5.1.1alpha+20120614-2.1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20160213-1 libncurses5-dev_6.0+20160213-1 libncursesw5_6.0+20160213-1 libnettle6_3.2-1 libnghttp2-14_1.7.1-2 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpango-1.0-0_1.38.1-1 libpangocairo-1.0-0_1.38.1-1 libpangoft2-1.0-0_1.38.1-1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.38-1 libpcre3_2:8.38-1 libpcre3-dev_2:8.38-1 libpcre32-3_2:8.38-1 libpcrecpp0v5_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng12-0_1.2.54-3 libpng12-dev_1.2.54-3 libprocps5_2:3.3.11-3 libreadline-dev_6.3-8+b3 libreadline6_6.3-8+b3 libreadline6-dev_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d-1+b1 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsm6_2:1.2.2-1+b1 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.2_1.0.2f-2 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 libsystemd0_228-6 libtasn1-6_4.7-3 libtcl8.6_8.6.4+dfsg-3 libthai-data_0.1.24-2 libthai0_0.1.24-2 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160213-1 libtinfo5_6.0+20160213-1 libtk8.6_8.6.4+dfsg-3 libubsan0_5.3.1-8+rpi1 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1 libxcb-shm0_1.11.1-1 libxcb1_1.11.1-1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.3+dfsg1-1 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 openssl_1.0.2f-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 po-debconf_1.0.19 procps_2:3.3.11-3 r-base-core_3.2.3-6 r-base-dev_3.2.3-6 r-bioc-biocgenerics_0.16.0-1 r-bioc-iranges_2.4.7-1 r-bioc-s4vectors_0.8.11-1 r-bioc-xvector_0.10.0-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 ucf_3.0035 udev_228-6 unzip_6.0-20 util-linux_2.27.1-3 x11-common_1:7.7+13 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Feb 22 13:48:59 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biostrings_2.38.4-1.dsc
dpkg-source: info: extracting r-bioc-biostrings in r-bioc-biostrings-2.38.4
dpkg-source: info: unpacking r-bioc-biostrings_2.38.4.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.38.4-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-782e51b9-dda1-4d7e-98c6-4a5b27e39cc4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package r-bioc-biostrings
dpkg-buildpackage: source version 2.38.4-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-biostrings-2.38.4
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.3-6), r-api-3" >> debian/r-bioc-biostrings.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Mon, 22 Feb 2016 08:56:59 +0100\"" \
; \
else \
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Mon, 22 Feb 2016 08:56:59 +0100\"" \
; \
fi
* installing *source* package 'Biostrings' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BAB_class.c -o BAB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BitMatrix.c -o BitMatrix.o
BitMatrix.c: In function 'debug_BitMatrix':
BitMatrix.c:382:41: warning: left shift count >= width of type [-Wshift-count-overflow]
bitcol0 = _new_BitCol(40, 33UL + (1UL << 39));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MIndex_class.c -o MIndex_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SparseList_utils.c -o SparseList_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSetList_class.c -o XStringSetList_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_class.c -o XStringSet_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XStringSet_io.c -o XStringSet_io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XString_class.c -o XString_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_needwunsQS.c -o align_needwunsQS.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c align_utils.c -o align_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c find_palindromes.c -o find_palindromes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gtestsim.c -o gtestsim.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inject_code.c -o inject_code.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c letter_frequency.c -o letter_frequency.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowlevel_matching.c -o lowlevel_matching.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_BOC.c -o match_BOC.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_BOC2.c -o match_BOC2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_PWM.c -o match_PWM.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern.c -o match_pattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_indels.c -o match_pattern_indels.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict.c -o match_pdict.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_pdict_utils.c -o match_pdict_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match_reporting.c -o match_reporting.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmatchPattern.c -o pmatchPattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replaceAt.c -o replaceAt.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c replace_letter_at.c -o replace_letter_at.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strutils.c -o strutils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xscat.c -o xscat.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XStringSet_io.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_BOC.o match_BOC2.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'setequal' from package 'base' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Biostrings)
rm -vf /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/R.css \
/<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/COPYING \
/<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/LICENSE.txt
if test -f debian/overrides; then \
install -d /<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/<<PKGBUILDDIR>>/debian/r-bioc-biostrings/usr/share/lintian/overrides/r-bioc-biostrings; \
fi
Adding cdbs dependencies to debian/r-bioc-biostrings.substvars
dh_installdirs -pr-bioc-biostrings
dh_installdocs -pr-bioc-biostrings ./NEWS ./TODO
dh_installexamples -pr-bioc-biostrings
dh_installman -pr-bioc-biostrings
dh_installinfo -pr-bioc-biostrings
dh_installmenu -pr-bioc-biostrings
dh_installcron -pr-bioc-biostrings
dh_installinit -pr-bioc-biostrings
dh_installdebconf -pr-bioc-biostrings
dh_installemacsen -pr-bioc-biostrings
dh_installcatalogs -pr-bioc-biostrings
dh_installpam -pr-bioc-biostrings
dh_installlogrotate -pr-bioc-biostrings
dh_installlogcheck -pr-bioc-biostrings
dh_installchangelogs -pr-bioc-biostrings ./CHANGES
dh_installudev -pr-bioc-biostrings
dh_lintian -pr-bioc-biostrings
dh_bugfiles -pr-bioc-biostrings
dh_install -pr-bioc-biostrings
dh_link -pr-bioc-biostrings
dh_installmime -pr-bioc-biostrings
dh_installgsettings -pr-bioc-biostrings
dh_strip -pr-bioc-biostrings
dh_compress -pr-bioc-biostrings
dh_fixperms -pr-bioc-biostrings
dh_makeshlibs -pr-bioc-biostrings
dh_installdeb -pr-bioc-biostrings
dh_perl -pr-bioc-biostrings
dh_shlibdeps -pr-bioc-biostrings
dh_gencontrol -pr-bioc-biostrings
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-biostrings
dh_builddeb -pr-bioc-biostrings
dpkg-deb: building package 'r-bioc-biostrings-dbgsym' in '../r-bioc-biostrings-dbgsym_2.38.4-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-biostrings' in '../r-bioc-biostrings_2.38.4-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-biostrings_2.38.4-1_armhf.changes
dpkg-genchanges: warning: package r-bioc-biostrings-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-biostrings-2.38.4
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160302-2232
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-biostrings_2.38.4-1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Mon, 22 Feb 2016 08:56:59 +0100
Source: r-bioc-biostrings
Binary: r-bioc-biostrings
Architecture: armhf
Version: 2.38.4-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Closes: 815429
Changes:
r-bioc-biostrings (2.38.4-1) unstable; urgency=medium
.
* New upstream version
Build-Depends: r-bioc-iranges (>= 2.4.7)
* cme fix dpkg-control
* Bumped Versioned Build-Depends of r-bioc-xvector
Closes: #815429
Checksums-Sha1:
c38d79db26d01d8d770b9ed36ea867afc7d84f69 205700 r-bioc-biostrings-dbgsym_2.38.4-1_armhf.deb
a59a39568b2caccaa5b5f714b830dea4fd12478b 13535762 r-bioc-biostrings_2.38.4-1_armhf.deb
Checksums-Sha256:
fb2a36c0f6e4771c5486972a476e565bebd4446caef98da8a41c6d10a21dcf2c 205700 r-bioc-biostrings-dbgsym_2.38.4-1_armhf.deb
a9aee952f03c07aade2a0eddd122e23086a3f76dc7c4c9386976359be307359a 13535762 r-bioc-biostrings_2.38.4-1_armhf.deb
Files:
2dd5af57c87c25fafd7c6447446ac1fa 205700 debug extra r-bioc-biostrings-dbgsym_2.38.4-1_armhf.deb
d5c784caaccbd9952cd863adfeb382a1 13535762 gnu-r optional r-bioc-biostrings_2.38.4-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-biostrings-dbgsym_2.38.4-1_armhf.deb
-------------------------------------------
new debian package, version 2.0.
size 205700 bytes: control archive=511 bytes.
486 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-biostrings-dbgsym
Source: r-bioc-biostrings
Version: 2.38.4-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 246
Depends: r-bioc-biostrings (= 2.38.4-1)
Section: debug
Priority: extra
Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
Description: Debug symbols for r-bioc-biostrings
Auto-Built-Package: debug-symbols
Build-Ids: 5ba65db7004e7e5f119c50997ae7fe31236fc8b4
drwxr-xr-x root/root 0 2016-03-02 22:31 ./
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/debug/.build-id/5b/
-rw-r--r-- root/root 241636 2016-03-02 22:31 ./usr/lib/debug/.build-id/5b/a65db7004e7e5f119c50997ae7fe31236fc8b4.debug
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/share/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-02 22:31 ./usr/share/doc/r-bioc-biostrings-dbgsym -> r-bioc-biostrings
r-bioc-biostrings_2.38.4-1_armhf.deb
------------------------------------
new debian package, version 2.0.
size 13535762 bytes: control archive=3109 bytes.
626 bytes, 13 lines control
7307 bytes, 83 lines md5sums
Package: r-bioc-biostrings
Version: 2.38.4-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14445
Depends: r-base-core (>= 3.2.3-6), r-api-3, libc6 (>= 2.7), r-bioc-xvector (>= 0.10.0), r-bioc-iranges (>= 2.4.7)
Section: gnu-r
Priority: optional
Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
drwxr-xr-x root/root 0 2016-03-02 22:31 ./
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/
drwxr-xr-x root/root 0 2016-03-02 22:29 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-02 22:29 ./usr/lib/R/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/
-rw-r--r-- root/root 2475 2016-03-02 22:29 ./usr/lib/R/site-library/Biostrings/DESCRIPTION
-rw-r--r-- root/root 5295 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/INDEX
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/
-rw-r--r-- root/root 7829 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/Rd.rds
-rw-r--r-- root/root 320 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/data.rds
-rw-r--r-- root/root 8028 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
-rw-r--r-- root/root 6386 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/links.rds
-rw-r--r-- root/root 2372 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
-rw-r--r-- root/root 1842 2016-03-02 22:29 ./usr/lib/R/site-library/Biostrings/Meta/package.rds
-rw-r--r-- root/root 455 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/Meta/vignette.rds
-rw-r--r-- root/root 11167 2016-03-02 22:29 ./usr/lib/R/site-library/Biostrings/NAMESPACE
-rw-r--r-- root/root 17344 2016-03-02 22:29 ./usr/lib/R/site-library/Biostrings/NEWS
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/R/
-rw-r--r-- root/root 1056 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/R/Biostrings
-rw-r--r-- root/root 873195 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
-rw-r--r-- root/root 16237 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
drwxr-xr-x root/root 0 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/
-rw-r--r-- root/root 712 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
-rw-r--r-- root/root 635 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
-rw-r--r-- root/root 628 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
-rw-r--r-- root/root 620 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
-rw-r--r-- root/root 648 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
-rw-r--r-- root/root 4533 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
-rw-r--r-- root/root 673 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/PAM120.rda
-rw-r--r-- root/root 635 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/PAM250.rda
-rw-r--r-- root/root 767 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/PAM30.rda
-rw-r--r-- root/root 736 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/PAM40.rda
-rw-r--r-- root/root 740 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/PAM70.rda
-rw-r--r-- root/root 6445 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/phiX174Phage.rda
-rw-r--r-- root/root 37751 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/srPhiX174.rda
-rw-r--r-- root/root 66419 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/doc/
-rw-r--r-- root/root 3614 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
-rw-r--r-- root/root 8514 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
-rw-r--r-- root/root 172500 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
-rw-r--r-- root/root 9518 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
-rw-r--r-- root/root 120372 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
-rw-r--r-- root/root 5239 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
-rw-r--r-- root/root 10512 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rnw
-rw-r--r-- root/root 170896 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.pdf
-rw-r--r-- root/root 25160 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.R
-rw-r--r-- root/root 53421 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
-rw-r--r-- root/root 331884 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
-rw-r--r-- root/root 3526 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/doc/index.html
-rw-r--r-- root/root 3664 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.R
-rw-r--r-- root/root 9923 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.Rnw
-rw-r--r-- root/root 261879 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.pdf
drwxr-xr-x root/root 0 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/
-rw-r--r-- root/root 6313 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
-rw-r--r-- root/root 438 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/README
-rw-r--r-- root/root 1633 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/Sc.fa
-rw-r--r-- root/root 1653 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/Sp.fa
-rw-r--r-- root/root 11525633 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
-rw-r--r-- root/root 169 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
-rw-r--r-- root/root 495 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
-rw-r--r-- root/root 667 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
-rw-r--r-- root/root 37906 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
-rw-r--r-- root/root 31740 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
-rw-r--r-- root/root 27326 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa
-rw-r--r-- root/root 8093 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/
-rw-r--r-- root/root 41809 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/AnIndex
-rw-r--r-- root/root 389097 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/Biostrings.rdb
-rw-r--r-- root/root 1700 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/Biostrings.rdx
-rw-r--r-- root/root 6703 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/aliases.rds
-rw-r--r-- root/root 767 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/help/paths.rds
drwxr-xr-x root/root 0 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/html/
-rw-r--r-- root/root 90511 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/html/00Index.html
-rw-r--r-- root/root 1319 2016-03-02 22:31 ./usr/lib/R/site-library/Biostrings/html/R.css
drwxr-xr-x root/root 0 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/include/
-rw-r--r-- root/root 6264 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h
-rw-r--r-- root/root 6541 2016-03-02 22:30 ./usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h
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Build Architecture: armhf
Build-Space: 43180
Build-Time: 213
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 482
Job: r-bioc-biostrings_2.38.4-1
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 740
Source-Version: 2.38.4-1
Space: 43180
Status: successful
Version: 2.38.4-1
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Finished at 20160302-2232
Build needed 00:12:20, 43180k disc space