r-bioc-biostrings →
2.36.1-1 →
armhf → 2015-05-15 16:58:24
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-biostrings 2.36.1-1 (armhf) 15 May 2015 16:43 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biostrings
Version: 2.36.1-1
Source Version: 2.36.1-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-dH0VDV/r-bioc-biostrings-2.36.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-biostrings-dH0VDV' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-3237dcae-f33f-4949-9851-5b36271b0396' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [7881 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9649 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
Building dependency tree...
NOTICE: 'r-bioc-biostrings' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
Need to get 12.7 MB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-bioc-biostrings 2.36.1-1 (dsc) [2156 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-bioc-biostrings 2.36.1-1 (tar) [12.7 MB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-bioc-biostrings 2.36.1-1 (diff) [4112 B]
Fetched 12.7 MB in 3s (4147 kB/s)
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-alQJwK/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
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(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-bioc-xvector (>= 0.8.0)
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-bioc-xvector (>= 0.8.0)
dpkg-deb: building package `sbuild-build-depends-r-bioc-biostrings-dummy' in `/«BUILDDIR»/resolver-8jS405/apt_archive/sbuild-build-depends-r-bioc-biostrings-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biostrings build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs cpp cpp-4.9 debhelper file fontconfig fontconfig-config
fonts-dejavu-core g++-4.9 gcc gcc-4.9 gcc-4.9-base gettext gettext-base
gfortran gfortran-4.9 groff-base intltool-debian libasan1 libasprintf0c2
libatomic1 libblas-common libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
libgcc-4.9-dev libgcc1 libgfortran-4.9-dev libgfortran3 libglib2.0-0
libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhogweed2 libice6 libidn11 libisl13 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev
libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
libpng12-dev libreadline-dev libreadline6-dev librtmp1 libsasl2-2
libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libstdc++-4.9-dev
libstdc++6 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtinfo-dev
libtk8.6 libubsan0 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges r-bioc-s4vectors r-bioc-xvector ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts cpp-doc gcc-4.9-locales dh-make
gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib manpages-dev autoconf automake
libtool flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libquadmath-dbg gettext-doc gfortran-doc gfortran-4.9-doc
libgfortran3-dbg groff gnutls-bin krb5-doc krb5-user liblzma-doc ncurses-doc
readline-doc libstdc++-4.9-doc tcl8.6 tk8.6 less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
bzip2-doc ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libsasl2-modules xml-core libmail-sendmail-perl r-recommended
r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base
intltool-debian libasprintf0c2 libblas-common libblas-dev libblas3
libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libffi6
libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0
libgnutls-deb0-28 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2
libice6 libidn11 libisl13 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev
libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
libpng12-dev libreadline-dev libreadline6-dev librtmp1 libsasl2-2
libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.6
libthai-data libthai0 libtiff5 libtinfo-dev libtk8.6 libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors
r-bioc-xvector sbuild-build-depends-r-bioc-biostrings-dummy ucf unzip
x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-4.9 g++-4.9 gcc gcc-4.9 gcc-4.9-base libasan1 libatomic1
libgcc-4.9-dev libgcc1 libgomp1 libstdc++-4.9-dev libstdc++6 libubsan0
14 upgraded, 107 newly installed, 0 to remove and 22 not upgraded.
Need to get 77.2 MB/77.2 MB of archives.
After this operation, 129 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 4.9.2-10+b1 [34.8 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 4.9.2-10+b1 [6796 B]
Get:3 http://172.17.0.1/private/ stretch-staging/main libasan1 armhf 4.9.2-10+b1 [165 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 4.9.2-10+b1 [68.3 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libisl13 armhf 0.14-2 [353 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main cpp-4.9 armhf 4.9.2-10+b1 [4273 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main g++-4.9 armhf 4.9.2-10+b1 [11.9 MB]
Get:8 http://172.17.0.1/private/ stretch-staging/main gcc-4.9 armhf 4.9.2-10+b1 [4453 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libgcc-4.9-dev armhf 4.9.2-10+b1 [354 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main gcc-4.9-base armhf 4.9.2-10+b1 [160 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 4.9.2-10+b1 [235 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libstdc++-4.9-dev armhf 4.9.2-10+b1 [1125 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:4.9.2-10+b1 [39.4 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2a-1 [878 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libnettle4 armhf 2.7.1-5 [178 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libhogweed2 armhf 2.7.1-5 [117 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-2 [94.1 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.15-2 [646 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.12.1+dfsg-19 [54.8 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.12.1+dfsg-19 [108 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.12.1+dfsg-19 [256 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-19 [128 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.30-1 [166 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-13 [65.5 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-13 [97.2 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.40+dfsg-1 [192 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.5.2-4 [412 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.32.6-3 [422 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3 [38.1 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.0-2.1 [662 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.0-2 [2399 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1 [54.0 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.42.1-2 [238 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.9-1 [31.4 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 4.9.2-10+b1 [154 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 0.9.40-2 [481 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+9 [287 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-1 [161 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-1 [44.7 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0 armhf 2:8.35-3.3 [139 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1 [31.2 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.3.1-12 [97.0 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.3-13 [193 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main cdbs all 0.4.130 [76.4 kB]
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Get:88 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150101 [813 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main gcc armhf 4:4.9.2-3 [5126 B]
Get:92 http://172.17.0.1/private/ stretch-staging/main libgfortran-4.9-dev armhf 4.9.2-10+b1 [179 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main gfortran-4.9 armhf 4.9.2-10+b1 [4522 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:4.9.2-3 [1294 B]
Get:95 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:96 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-7 [27.5 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.3.1-12 [400 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.3.1-12 [49.3 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 5.9+20140913-1 [65.4 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 5.9+20140913-1 [154 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:107 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-3.3 [411 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2 [236 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:111 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:112 http://172.17.0.1/private/ stretch-staging/main zip armhf 3.0-8 [326 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main unzip armhf 6.0-16 [142 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main r-base-core armhf 3.2.0-2 [20.0 MB]
Get:116 http://172.17.0.1/private/ stretch-staging/main r-base-dev all 3.2.0-2 [4356 B]
Get:117 http://172.17.0.1/private/ stretch-staging/main r-bioc-biocgenerics all 0.14.0-1 [440 kB]
Get:118 http://172.17.0.1/private/ stretch-staging/main r-bioc-s4vectors armhf 0.6.0-1 [734 kB]
Get:119 http://172.17.0.1/private/ stretch-staging/main r-bioc-iranges armhf 2.2.1-1 [1528 kB]
Get:120 http://172.17.0.1/private/ stretch-staging/main r-bioc-xvector armhf 0.8.0-1 [318 kB]
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Processing triggers for systemd (215-17) ...
Setting up libgomp1:armhf (4.9.2-10+b1) ...
Setting up libatomic1:armhf (4.9.2-10+b1) ...
Setting up libasan1:armhf (4.9.2-10+b1) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Regenerating fonts cache... done.
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Setting up libcairo2:armhf (1.14.0-2.1) ...
Setting up libglib2.0-0:armhf (2.44.0-2) ...
No schema files found: doing nothing.
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Setting up libdatrie1:armhf (0.2.9-1) ...
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Setting up libharfbuzz0b:armhf (0.9.40-2) ...
Setting up x11-common (1:7.7+9) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
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Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ...
Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (2:8.35-3.3) ...
Setting up libsm6:armhf (2:1.2.2-1) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-2) ...
Setting up libjpeg62-turbo:armhf (1:1.3.1-12) ...
Setting up libtiff5:armhf (4.0.3-13) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
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Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up file (1:5.22+15-2) ...
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Setting up intltool-debian (0.35.0+20060710.2) ...
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Setting up debhelper (9.20150101) ...
Setting up gcc (4:4.9.2-3) ...
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Setting up gfortran (4:4.9.2-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
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Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-7) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.3.1-12) ...
Setting up libjpeg-dev (1:1.3.1-12) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9+20140913-1) ...
Setting up libncurses5-dev:armhf (5.9+20140913-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre3-dev:armhf (2:8.35-3.3) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libpng12-dev:armhf (1.2.50-2) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up zip (3.0-8) ...
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Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Setting up r-base-core (3.2.0-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.2.0-2) ...
Setting up r-bioc-biocgenerics (0.14.0-1) ...
Setting up r-bioc-s4vectors (0.6.0-1) ...
Setting up r-bioc-iranges (2.2.1-1) ...
Setting up r-bioc-xvector (0.8.0-1) ...
Setting up sbuild-build-depends-r-bioc-biostrings-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
Processing triggers for systemd (215-17) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10+b1 gcc-4.9_4.9.2-10+b1 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10+b1 libstdc++6_4.9.2-10+b1 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 cdbs_0.4.130 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-3 cpp-4.9_4.9.2-10+b1 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.34-1 g++_4:4.9.2-2 g++-4.9_4.9.2-10+b1 gcc_4:4.9.2-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10+b1 gcc-4.9-base_4.9.2-10+b1 gettext_0.19.3-2 gettext-base_0.19.3-2 gfortran_4:4.9.2-3 gfortran-4.9_4.9.2-10+b1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10+b1 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10+b1 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libbz2-dev_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcairo2_1.14.0-2.1 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.42.1-2 libdatrie1_0.2.9-1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libfontconfig1_2.11.0-6.3 libfreetype6_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10+b1 libgcc1_1:4.9.2-10+b1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran-4.9-dev_4.9.2-10+b1 libgfortran3_4.9.2-10+b1 libglib2.0-0_2.44.0-2 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.15-2 libgomp1_4.9.2-10+b1 libgpg-error0_1.17-3 libgraphite2-3_1.2.4-3 libgssapi-krb5-2_1.12.1+dfsg-19 libharfbuzz0b_0.9.40-2 libhogweed2_2.7.1-5 libice6_2:1.0.9-1 libidn11_1.30-1 libisl10_0.12.2-2 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-dev_1:1.3.1-12 libjpeg62-turbo_1:1.3.1-12 libjpeg62-turbo-dev_1:1.3.1-12 libk5crypto3_1.12.1+dfsg-19 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkrb5-3_1.12.1+dfsg-19 libkrb5support0_1.12.1+dfsg-19 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.40+dfsg-1 liblocale-gettext-perl_1.05-8+b1 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncurses5-dev_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnettle4_2.7.1-5 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.35-3.3 libpcre3-dev_2:8.35-3.3 libpcrecpp0_2:8.35-3.3 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2 libpng12-dev_1.2.50-2 libprocps3_2:3.3.9-9 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 librtmp1_2.4+20150115.gita107cef-1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsm6_2:1.2.2-1 libsmartcols1_2.25.2-6 libss2_1.42.12-1.1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2a-1 libstdc++-4.9-dev_4.9.2-10+b1 libstdc++6_4.9.2-10+b1 libsystemd0_215-17 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.22-1 libthai0_0.1.22-1 libtiff5_4.0.3-13 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140913-1 libtinfo5_5.9+20140913-1 libtk8.6_8.6.4+dfsg-2 libubsan0_4.9.2-10+b1 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3 libxcb-shm0_1.10-3 libxcb1_1.10-3 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.1+dfsg1-5 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 r-base-core_3.2.0-2 r-base-dev_3.2.0-2 r-bioc-biocgenerics_0.14.0-1 r-bioc-iranges_2.2.1-1 r-bioc-s4vectors_0.6.0-1 r-bioc-xvector_0.8.0-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biostrings-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 ucf_3.0030 udev_215-17 unzip_6.0-16 util-linux_2.25.2-6 x11-common_1:7.7+9 xdg-utils_1.1.0~rc1+git20111210-7.4 xz-utils_5.1.1alpha+20120614-2 zip_3.0-8 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat May 9 23:06:52 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biostrings_2.36.1-1.dsc
dpkg-source: info: extracting r-bioc-biostrings in r-bioc-biostrings-2.36.1
dpkg-source: info: unpacking r-bioc-biostrings_2.36.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biostrings_2.36.1-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
OLDPWD=/usr/share/debootstrap/scripts
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-3237dcae-f33f-4949-9851-5b36271b0396
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 43413 22
SSH_CONNECTION=172.17.0.6 43413 172.17.2.3 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-biostrings
dpkg-buildpackage: source version 2.36.1-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-biostrings-2.36.1
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.0-2)" >> debian/r-bioc-biostrings.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Sun, 10 May 2015 01:02:30 +0200 \"" \
; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Sun, 10 May 2015 01:02:30 +0200 \"" \
; \
fi
* installing *source* package 'Biostrings' ...
** libs
make[1]: Entering directory '/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c BAB_class.c -o BAB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c BitMatrix.c -o BitMatrix.o
BitMatrix.c: In function 'debug_BitMatrix':
BitMatrix.c:382:3: warning: left shift count >= width of type
bitcol0 = _new_BitCol(40, 33UL + (1UL << 39));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c MIndex_class.c -o MIndex_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c SparseList_utils.c -o SparseList_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XStringSetList_class.c -o XStringSetList_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XStringSet_class.c -o XStringSet_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XStringSet_io.c -o XStringSet_io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XString_class.c -o XString_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c align_needwunsQS.c -o align_needwunsQS.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c align_utils.c -o align_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c find_palindromes.c -o find_palindromes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gtestsim.c -o gtestsim.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inject_code.c -o inject_code.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io_utils.c -o io_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c letter_frequency.c -o letter_frequency.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowlevel_matching.c -o lowlevel_matching.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_BOC.c -o match_BOC.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_BOC2.c -o match_BOC2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_PWM.c -o match_PWM.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pattern.c -o match_pattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pattern_indels.c -o match_pattern_indels.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pdict.c -o match_pdict.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pdict_Twobit.c -o match_pdict_Twobit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_pdict_utils.c -o match_pdict_utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match_reporting.c -o match_reporting.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pmatchPattern.c -o pmatchPattern.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c replace_letter_at.c -o replace_letter_at.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c strutils.c -o strutils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xscat.c -o xscat.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XStringSet_io.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o io_utils.o letter_frequency.o lowlevel_matching.o match_BOC.o match_BOC2.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Entering directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'setequal' from package 'base' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Biostrings)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/lib/R/site-library/Biostrings/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-biostrings/usr/share/lintian/overrides/r-bioc-biostrings; \
fi
Adding cdbs dependencies to debian/r-bioc-biostrings.substvars
dh_installdirs -pr-bioc-biostrings
dh_installdocs -pr-bioc-biostrings ./NEWS ./TODO
dh_installexamples -pr-bioc-biostrings
dh_installman -pr-bioc-biostrings
dh_installinfo -pr-bioc-biostrings
dh_installmenu -pr-bioc-biostrings
dh_installcron -pr-bioc-biostrings
dh_installinit -pr-bioc-biostrings
dh_installdebconf -pr-bioc-biostrings
dh_installemacsen -pr-bioc-biostrings
dh_installcatalogs -pr-bioc-biostrings
dh_installpam -pr-bioc-biostrings
dh_installlogrotate -pr-bioc-biostrings
dh_installlogcheck -pr-bioc-biostrings
dh_installchangelogs -pr-bioc-biostrings ./CHANGES
dh_installudev -pr-bioc-biostrings
dh_lintian -pr-bioc-biostrings
dh_bugfiles -pr-bioc-biostrings
dh_install -pr-bioc-biostrings
dh_link -pr-bioc-biostrings
dh_installmime -pr-bioc-biostrings
dh_installgsettings -pr-bioc-biostrings
dh_strip -pr-bioc-biostrings
dh_compress -pr-bioc-biostrings
dh_fixperms -pr-bioc-biostrings
dh_makeshlibs -pr-bioc-biostrings
dh_installdeb -pr-bioc-biostrings
dh_perl -pr-bioc-biostrings
dh_shlibdeps -pr-bioc-biostrings
dh_gencontrol -pr-bioc-biostrings
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-biostrings
dh_builddeb -pr-bioc-biostrings
dpkg-deb: building package `r-bioc-biostrings' in `../r-bioc-biostrings_2.36.1-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-biostrings_2.36.1-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-biostrings-2.36.1
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150515-1656
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-biostrings_2.36.1-1_armhf.changes:
─────────────────────────────────────────
Format: 1.8
Date: Sun, 10 May 2015 01:02:30 +0200
Source: r-bioc-biostrings
Binary: r-bioc-biostrings
Architecture: armhf
Version: 2.36.1-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-biostrings - GNU R string objects representing biological sequences
Changes:
r-bioc-biostrings (2.36.1-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
b921a7b38d6e6bc8630bd17523d1cf49b86a8e62 13533248 r-bioc-biostrings_2.36.1-1_armhf.deb
Checksums-Sha256:
db75ac941af6943ca3e439030eb0ee5539b1518e299a8bf59ec4bd86b1e0cfed 13533248 r-bioc-biostrings_2.36.1-1_armhf.deb
Files:
40be1fe0bd80b129fcfd645fc3c7d76b 13533248 gnu-r optional r-bioc-biostrings_2.36.1-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-biostrings_2.36.1-1_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
size 13533248 bytes: control archive=3268 bytes.
610 bytes, 13 lines control
7227 bytes, 82 lines md5sums
Package: r-bioc-biostrings
Version: 2.36.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14379
Depends: r-base-core (>= 3.2.0-2), libc6 (>= 2.7), zlib1g (>= 1:1.1.4), r-bioc-xvector (>= 0.6.0)
Section: gnu-r
Priority: optional
Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
Description: GNU R string objects representing biological sequences
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
drwxr-xr-x root/root 0 2015-05-15 16:55 ./
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/
drwxr-xr-x root/root 0 2015-05-15 16:53 ./usr/lib/
drwxr-xr-x root/root 0 2015-05-15 16:53 ./usr/lib/R/
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/
-rw-r--r-- root/root 11158 2015-05-15 16:53 ./usr/lib/R/site-library/Biostrings/NAMESPACE
-rw-r--r-- root/root 17344 2015-05-15 16:53 ./usr/lib/R/site-library/Biostrings/NEWS
-rw-r--r-- root/root 2489 2015-05-15 16:53 ./usr/lib/R/site-library/Biostrings/DESCRIPTION
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/
-rw-r--r-- root/root 1835 2015-05-15 16:53 ./usr/lib/R/site-library/Biostrings/Meta/package.rds
-rw-r--r-- root/root 7826 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/Rd.rds
-rw-r--r-- root/root 8028 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
-rw-r--r-- root/root 6386 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/links.rds
-rw-r--r-- root/root 319 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/data.rds
-rw-r--r-- root/root 454 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/vignette.rds
-rw-r--r-- root/root 2367 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/libs/
-rw-r--r-- root/root 191012 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/libs/Biostrings.so
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/R/
-rw-r--r-- root/root 1056 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/R/Biostrings
-rw-r--r-- root/root 870926 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
-rw-r--r-- root/root 16346 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
drwxr-xr-x root/root 0 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/
-rw-r--r-- root/root 712 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
-rw-r--r-- root/root 635 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
-rw-r--r-- root/root 628 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
-rw-r--r-- root/root 620 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
-rw-r--r-- root/root 648 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
-rw-r--r-- root/root 4533 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
-rw-r--r-- root/root 673 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/PAM120.rda
-rw-r--r-- root/root 635 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/PAM250.rda
-rw-r--r-- root/root 767 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/PAM30.rda
-rw-r--r-- root/root 736 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/PAM40.rda
-rw-r--r-- root/root 740 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/PAM70.rda
-rw-r--r-- root/root 6445 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/phiX174Phage.rda
-rw-r--r-- root/root 37751 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/srPhiX174.rda
-rw-r--r-- root/root 66419 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/doc/
-rw-r--r-- root/root 3614 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
-rw-r--r-- root/root 8514 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
-rw-r--r-- root/root 172328 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
-rw-r--r-- root/root 9518 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
-rw-r--r-- root/root 120520 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
-rw-r--r-- root/root 5239 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
-rw-r--r-- root/root 10512 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rnw
-rw-r--r-- root/root 170778 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.pdf
-rw-r--r-- root/root 25160 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.R
-rw-r--r-- root/root 53421 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
-rw-r--r-- root/root 332167 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
-rw-r--r-- root/root 3664 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.R
-rw-r--r-- root/root 9923 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.Rnw
-rw-r--r-- root/root 261995 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/doc/matchprobes.pdf
-rw-r--r-- root/root 3526 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/doc/index.html
drwxr-xr-x root/root 0 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/
-rw-r--r-- root/root 6313 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
-rw-r--r-- root/root 438 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/README
-rw-r--r-- root/root 1633 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/Sc.fa
-rw-r--r-- root/root 1653 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/Sp.fa
-rw-r--r-- root/root 11525633 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
-rw-r--r-- root/root 169 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
-rw-r--r-- root/root 495 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
-rw-r--r-- root/root 667 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
-rw-r--r-- root/root 37906 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
-rw-r--r-- root/root 31740 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
-rw-r--r-- root/root 27326 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa
-rw-r--r-- root/root 8093 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
drwxr-xr-x root/root 0 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/include/
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drwxr-xr-x root/root 0 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/unitTests/
-rw-r--r-- root/root 10946 2015-05-15 16:54 ./usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R
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drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/lib/R/site-library/Biostrings/help/
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drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-05-15 16:55 ./usr/share/doc/r-bioc-biostrings/
-rw-r--r-- root/root 262 2014-06-13 09:06 ./usr/share/doc/r-bioc-biostrings/README.test
-rw-r--r-- root/root 259 2014-06-13 09:05 ./usr/share/doc/r-bioc-biostrings/run-unit-test
-rw-r--r-- root/root 5304 2014-10-20 04:51 ./usr/share/doc/r-bioc-biostrings/copyright
-rw-r--r-- root/root 6012 2015-04-16 20:12 ./usr/share/doc/r-bioc-biostrings/NEWS.gz
-rw-r--r-- root/root 5852 2015-04-16 20:12 ./usr/share/doc/r-bioc-biostrings/TODO.gz
-rw-r--r-- root/root 457 2015-05-09 23:02 ./usr/share/doc/r-bioc-biostrings/changelog.Debian.gz
-rw-r--r-- root/root 1989 2015-04-16 20:12 ./usr/share/doc/r-bioc-biostrings/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 42748
Build-Time: 226
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 485
Job: r-bioc-biostrings_2.36.1-1
Machine Architecture: armhf
Package: r-bioc-biostrings
Package-Time: 772
Source-Version: 2.36.1-1
Space: 42748
Status: successful
Version: 2.36.1-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150515-1656
Build needed 00:12:52, 42748k disc space