r-bioc-affyio →
1.52.0-1 →
armhf → 2018-11-11 05:10:42
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-affyio 1.52.0-1 (armhf) Sun, 11 Nov 2018 05:01:03 +0000 |
+==============================================================================+
Package: r-bioc-affyio
Version: 1.52.0-1
Source Version: 1.52.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7d5fcbca-3d68-4c44-9155-6ac9774f088e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 9s (2672 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-affyio' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-affyio.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-affyio.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 114 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-affyio 1.52.0-1 (dsc) [2043 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-affyio 1.52.0-1 (tar) [110 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-affyio 1.52.0-1 (diff) [2208 B]
Fetched 114 kB in 0s (1359 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-affyio-kVfz1h/r-bioc-affyio-1.52.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-affyio-kVfz1h' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-BJnAMM/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-BJnAMM/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-BJnAMM/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 11 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-affyio-dummy' in '/<<BUILDDIR>>/resolver-BJnAMM/apt_archive/sbuild-build-depends-r-bioc-affyio-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-affyio-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Sources [504 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ Packages [588 B]
Fetched 2425 B in 0s (12.6 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-affyio build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd libperl5.26 libsasl2-modules perl-modules-5.26
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core g++ gcc gcc-7-base gettext gettext-base
gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base
icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3
libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cpp-doc debtags dh-make gcc-multilib manpages-dev flex bison gdb
gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc
libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils
libgraphite2-utils icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
python3-doc python3-tk python3-venv python3.6-venv python3.6-doc
binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools
intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev
sbuild-build-depends-r-bioc-affyio-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp g++ gcc
3 upgraded, 137 newly installed, 0 to remove and 8 not upgraded.
Need to get 79.6 MB/83.4 MB of archives.
After this operation, 257 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BJnAMM/apt_archive ./ sbuild-build-depends-r-bioc-affyio-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2+b1 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-8 [434 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf g++ armhf 4:8.2.0-2+rpi1 [1628 B]
Get:28 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:8.2.0-2+rpi1 [5196 B]
Get:29 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:8.2.0-2+rpi1 [19.5 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.044-1 [20.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.044-1 [12.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.1 [992 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-8+rpi1 [205 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-1 [326 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-1 [404 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-8+rpi1 [248 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-8+rpi1 [5812 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:87 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:91 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.9.0-1+rpi1 [650 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.9.0-1+rpi1 [657 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1+rpi1 [665 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.9.0-1+rpi1 [944 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:118 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
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Setting up cpp (4:8.2.0-2+rpi1) ...
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Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
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Installing new version of config file /etc/mime.types ...
Setting up libfile-which-perl (1.22-1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
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No schema files found: removed existing output file.
Setting up unzip (6.0-21) ...
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Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up gettext-base (0.19.8.1-8) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
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Setting up gcc (4:8.2.0-2+rpi1) ...
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Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
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Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.044-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
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Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.7-1) ...
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Setting up libtiff5:armhf (4.0.9+git181026-1) ...
Setting up autoconf (2.69-11) ...
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Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-8+rpi1) ...
Setting up libxcb1:armhf (1.13.1-1) ...
Setting up libharfbuzz-gobject0:armhf (1.9.0-1+rpi1) ...
Setting up libtool (2.4.6-6) ...
Setting up libpython3-stdlib:armhf (3.6.7-1) ...
Setting up libfontconfig1:armhf (2.13.1-1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-1) ...
Setting up python3 (3.6.7-1) ...
Setting up libblas-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran-8 (8.2.0-8+rpi1) ...
Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.9.0-1+rpi1) ...
Setting up libxcb-shm0:armhf (1.13.1-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up fontconfig (2.13.1-1) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.58.1-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libglib2.0-dev:armhf (2.58.1-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-3) ...
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.044-1) ...
Setting up libicu60:armhf (60.2-6) ...
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Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up icu-devtools (60.2-6) ...
Setting up gettext (0.19.8.1-8) ...
Setting up libicu-dev (60.2-6) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.5.1) ...
Setting up dh-r (20181101) ...
Setting up sbuild-build-depends-r-bioc-affyio-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-8+rpi1 gcc-8_8.2.0-8+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-8+rpi1 libstdc++6_8.2.0-8+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-8+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.1 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-8+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-8+rpi1 gcc-8-base_8.2.0-8+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-8+rpi1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_1.9.0-1+rpi1 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-5 init-system-helpers_1.55 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 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libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-8+rpi1 libstdc++6_8.2.0-8+rpi1 libswitch-perl_2.17-2 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-8+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-2+b1 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-affyio-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-10+rpi1 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 8 22:28:27 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-affyio_1.52.0-1.dsc
dpkg-source: info: extracting r-bioc-affyio in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-affyio_1.52.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-affyio_1.52.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-7d5fcbca-3d68-4c44-9155-6ac9774f088e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-affyio
dpkg-buildpackage: info: source version 1.52.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: affyio Version: 1.52.0
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Thu, 08 Nov 2018 23:23:54 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-affyio/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-affyio/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 08 Nov 2018 23:23:54 +0100'"
* installing *source* package 'affyio' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for main in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
checking for pthread_create in -lpthread... yes
checking if we can use pthreads... yes
checking if PTHREAD_STACK_MIN is defined... yes
configure: Enabling threading for affyio
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fread_functions.c -o fread_functions.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init_package.c -o init_package.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_abatch.c -o read_abatch.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPFileIntoRList':
read_bpmap.c:698:20: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(buf, "%d", j+1);
^
In file included from /usr/include/stdio.h:862,
from /usr/share/R/include/R.h:56,
from read_bpmap.c:23:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_bpmap.c:655:20: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(buf, "%d", j+1);
^
In file included from /usr/include/stdio.h:862,
from /usr/share/R/include/R.h:56,
from read_bpmap.c:23:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_bpmap.c:603:18: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(buf, "%d", j+1);
^
In file included from /usr/include/stdio.h:862,
from /usr/share/R/include/R.h:56,
from read_bpmap.c:23:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_cdf_xda.c -o read_cdf_xda.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_cdffile2.c -o read_cdffile2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_celfile_generic.c -o read_celfile_generic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_clf.c -o read_clf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_generic.c -o read_generic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_pgf.c -o read_pgf.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-affyio/usr/lib/R/site-library/affyio/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (affyio)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
W: Ignoring specified R dependency: R (>= 2.6.0)
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-affyio' in '../r-bioc-affyio_1.52.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-affyio-dbgsym' in '../r-bioc-affyio-dbgsym_1.52.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-affyio_1.52.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-11T05:10:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-affyio_1.52.0-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Thu, 08 Nov 2018 23:23:54 +0100
Source: r-bioc-affyio
Binary: r-bioc-affyio
Architecture: armhf
Version: 1.52.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-affyio - BioConductor tools for parsing Affymetrix data files
Changes:
r-bioc-affyio (1.52.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.2.1
Checksums-Sha1:
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Files:
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97ccc3f3f1c82cfc5f4a0242c78748d5 8343 gnu-r optional r-bioc-affyio_1.52.0-1_armhf.buildinfo
3f3f892d27b552fcc97f83777093b3a8 70504 gnu-r optional r-bioc-affyio_1.52.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-affyio-dbgsym_1.52.0-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 191864 bytes: control archive=536 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-affyio-dbgsym
Source: r-bioc-affyio
Version: 1.52.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 211
Depends: r-bioc-affyio (= 1.52.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-affyio
Build-Ids: 4c23dc8e45fa3c8ec91e6a130d0dac502eab627c
drwxr-xr-x root/root 0 2018-11-08 22:23 ./
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/debug/.build-id/4c/
-rw-r--r-- root/root 205172 2018-11-08 22:23 ./usr/lib/debug/.build-id/4c/23dc8e45fa3c8ec91e6a130d0dac502eab627c.debug
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/share/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-11-08 22:23 ./usr/share/doc/r-bioc-affyio-dbgsym -> r-bioc-affyio
r-bioc-affyio_1.52.0-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 70504 bytes: control archive=1324 bytes.
571 bytes, 13 lines control
1862 bytes, 24 lines md5sums
Package: r-bioc-affyio
Version: 1.52.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 208
Depends: r-base-core (>= 3.5.1-1), r-api-3.5, libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/affyio/
Description: BioConductor tools for parsing Affymetrix data files
This BioConductor package provides routines for parsing Affymetrix data
files based upon file format information. Primary focus is on accessing
the CEL and CDF file formats.
drwxr-xr-x root/root 0 2018-11-08 22:23 ./
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/
-rw-r--r-- root/root 797 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/DESCRIPTION
-rw-r--r-- root/root 375 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/INDEX
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/
-rw-r--r-- root/root 485 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/Rd.rds
-rw-r--r-- root/root 113 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/features.rds
-rw-r--r-- root/root 497 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/hsearch.rds
-rw-r--r-- root/root 230 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/links.rds
-rw-r--r-- root/root 219 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/nsInfo.rds
-rw-r--r-- root/root 863 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/Meta/package.rds
-rw-r--r-- root/root 73 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/NAMESPACE
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/R/
-rw-r--r-- root/root 1056 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/R/affyio
-rw-r--r-- root/root 7057 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/R/affyio.rdb
-rw-r--r-- root/root 388 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/R/affyio.rdx
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/
-rw-r--r-- root/root 297 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/AnIndex
-rw-r--r-- root/root 10744 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/affyio.rdb
-rw-r--r-- root/root 335 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/affyio.rdx
-rw-r--r-- root/root 172 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/aliases.rds
-rw-r--r-- root/root 212 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/help/paths.rds
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/html/
-rw-r--r-- root/root 1785 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/html/00Index.html
-rw-r--r-- root/root 1335 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/html/R.css
drwxr-xr-x root/root 0 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/libs/
-rw-r--r-- root/root 153676 2018-11-08 22:23 ./usr/lib/R/site-library/affyio/libs/affyio.so
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-rw-r--r-- root/root 285 2018-11-08 22:23 ./usr/share/doc/r-bioc-affyio/README.test
-rw-r--r-- root/root 707 2018-11-08 22:23 ./usr/share/doc/r-bioc-affyio/changelog.Debian.gz
-rw-r--r-- root/root 193 2018-10-30 19:29 ./usr/share/doc/r-bioc-affyio/changelog.gz
-rw-r--r-- root/root 535 2018-11-08 22:23 ./usr/share/doc/r-bioc-affyio/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1976
Build-Time: 36
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 522
Job: r-bioc-affyio_1.52.0-1
Machine Architecture: armhf
Package: r-bioc-affyio
Package-Time: 577
Source-Version: 1.52.0-1
Space: 1976
Status: successful
Version: 1.52.0-1
--------------------------------------------------------------------------------
Finished at 2018-11-11T05:10:40Z
Build needed 00:09:37, 1976k disk space