r-bioc-affyio →
1.36.0-1 →
armhf → 2015-05-15 05:25:10
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-affyio 1.36.0-1 (armhf) 15 May 2015 05:12 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-affyio
Version: 1.36.0-1
Source Version: 1.36.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-affyio-MT0n8H/r-bioc-affyio-1.36.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-affyio-MT0n8H' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-6a2aacea-6940-44b5-88d7-c0347cc147ab' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [7881 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9649 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
Building dependency tree...
NOTICE: 'r-bioc-affyio' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-affyio/trunk/
Need to get 110 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-bioc-affyio 1.36.0-1 (dsc) [2064 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-bioc-affyio 1.36.0-1 (tar) [106 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-bioc-affyio 1.36.0-1 (diff) [2012 B]
Fetched 110 kB in 0s (1847 kB/s)
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-GoKleK/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
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(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, zlib1g-dev, r-base-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, zlib1g-dev, r-base-dev
dpkg-deb: building package `sbuild-build-depends-r-bioc-affyio-dummy' in `/«BUILDDIR»/resolver-8xV4Dy/apt_archive/sbuild-build-depends-r-bioc-affyio-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-affyio build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs cpp cpp-4.9 debhelper file fontconfig fontconfig-config
fonts-dejavu-core g++-4.9 gcc gcc-4.9 gcc-4.9-base gettext gettext-base
gfortran gfortran-4.9 groff-base intltool-debian libasan1 libasprintf0c2
libatomic1 libblas-common libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
libgcc-4.9-dev libgcc1 libgfortran-4.9-dev libgfortran3 libglib2.0-0
libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhogweed2 libice6 libidn11 libisl13 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev
libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
libpng12-dev libreadline-dev libreadline6-dev librtmp1 libsasl2-2
libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libstdc++-4.9-dev
libstdc++6 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtinfo-dev
libtk8.6 libubsan0 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
libxt6 man-db po-debconf r-base-core r-base-dev ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts cpp-doc gcc-4.9-locales dh-make
gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib manpages-dev autoconf automake
libtool flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libquadmath-dbg gettext-doc gfortran-doc gfortran-4.9-doc
libgfortran3-dbg groff gnutls-bin krb5-doc krb5-user liblzma-doc ncurses-doc
readline-doc libstdc++-4.9-doc tcl8.6 tk8.6 less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
bzip2-doc ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libsasl2-modules xml-core libmail-sendmail-perl r-recommended
r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base
intltool-debian libasprintf0c2 libblas-common libblas-dev libblas3
libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libffi6
libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0
libgnutls-deb0-28 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2
libice6 libidn11 libisl13 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev
libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
libpng12-dev libreadline-dev libreadline6-dev librtmp1 libsasl2-2
libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.6
libthai-data libthai0 libtiff5 libtinfo-dev libtk8.6 libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev sbuild-build-depends-r-bioc-affyio-dummy ucf unzip x11-common
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-4.9 g++-4.9 gcc gcc-4.9 gcc-4.9-base libasan1 libatomic1
libgcc-4.9-dev libgcc1 libgomp1 libstdc++-4.9-dev libstdc++6 libubsan0
14 upgraded, 103 newly installed, 0 to remove and 22 not upgraded.
Need to get 74.2 MB/74.2 MB of archives.
After this operation, 124 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 4.9.2-10+b1 [34.8 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 4.9.2-10+b1 [6796 B]
Get:3 http://172.17.0.1/private/ stretch-staging/main libasan1 armhf 4.9.2-10+b1 [165 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 4.9.2-10+b1 [68.3 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libisl13 armhf 0.14-2 [353 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main cpp-4.9 armhf 4.9.2-10+b1 [4273 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main g++-4.9 armhf 4.9.2-10+b1 [11.9 MB]
Get:8 http://172.17.0.1/private/ stretch-staging/main gcc-4.9 armhf 4.9.2-10+b1 [4453 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libgcc-4.9-dev armhf 4.9.2-10+b1 [354 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main gcc-4.9-base armhf 4.9.2-10+b1 [160 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 4.9.2-10+b1 [235 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libstdc++-4.9-dev armhf 4.9.2-10+b1 [1125 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:4.9.2-10+b1 [39.4 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2a-1 [878 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libnettle4 armhf 2.7.1-5 [178 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libhogweed2 armhf 2.7.1-5 [117 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-2 [94.1 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.15-2 [646 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.12.1+dfsg-19 [54.8 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.12.1+dfsg-19 [108 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.12.1+dfsg-19 [256 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-19 [128 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.30-1 [166 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-13 [65.5 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-13 [97.2 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.40+dfsg-1 [192 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.5.2-4 [412 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.32.6-3 [422 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3 [38.1 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.0-2.1 [662 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.0-2 [2399 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1 [54.0 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.42.1-2 [238 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.9-1 [31.4 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 4.9.2-10+b1 [154 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 0.9.40-2 [481 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+9 [287 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-1 [161 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-1 [44.7 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0 armhf 2:8.35-3.3 [139 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1 [31.2 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.3.1-12 [97.0 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.3-13 [193 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main cdbs all 0.4.130 [76.4 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main cpp armhf 4:4.9.2-3 [17.6 kB]
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Get:88 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150101 [813 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main gcc armhf 4:4.9.2-3 [5126 B]
Get:92 http://172.17.0.1/private/ stretch-staging/main libgfortran-4.9-dev armhf 4.9.2-10+b1 [179 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main gfortran-4.9 armhf 4.9.2-10+b1 [4522 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:4.9.2-3 [1294 B]
Get:95 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:96 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
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Get:98 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-7 [27.5 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.3.1-12 [400 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.3.1-12 [49.3 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 5.9+20140913-1 [65.4 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 5.9+20140913-1 [154 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:107 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-3.3 [411 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2 [236 kB]
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Get:112 http://172.17.0.1/private/ stretch-staging/main zip armhf 3.0-8 [326 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main unzip armhf 6.0-16 [142 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main r-base-core armhf 3.2.0-2 [20.0 MB]
Get:116 http://172.17.0.1/private/ stretch-staging/main r-base-dev all 3.2.0-2 [4356 B]
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Unpacking liblapack3 (3.5.0-4) ...
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Unpacking liblapack-dev (3.5.0-4) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2_armhf.deb ...
Unpacking liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../libtinfo-dev_5.9+20140913-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (5.9+20140913-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
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Unpacking libncurses5-dev:armhf (5.9+20140913-1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../libpcre3-dev_2%3a8.35-3.3_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.35-3.3) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Selecting previously unselected package libpng12-dev:armhf.
Preparing to unpack .../libpng12-dev_1.2.50-2_armhf.deb ...
Unpacking libpng12-dev:armhf (1.2.50-2) ...
Selecting previously unselected package libreadline6-dev:armhf.
Preparing to unpack .../libreadline6-dev_6.3-8_armhf.deb ...
Unpacking libreadline6-dev:armhf (6.3-8) ...
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Unpacking libreadline-dev:armhf (6.3-8) ...
Selecting previously unselected package zip.
Preparing to unpack .../archives/zip_3.0-8_armhf.deb ...
Unpacking zip (3.0-8) ...
Selecting previously unselected package unzip.
Preparing to unpack .../unzip_6.0-16_armhf.deb ...
Unpacking unzip (6.0-16) ...
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Preparing to unpack .../xdg-utils_1.1.0~rc1+git20111210-7.4_all.deb ...
Unpacking xdg-utils (1.1.0~rc1+git20111210-7.4) ...
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Unpacking sbuild-build-depends-r-bioc-affyio-dummy (0.invalid.0) ...
Processing triggers for systemd (215-17) ...
Setting up libgomp1:armhf (4.9.2-10+b1) ...
Setting up libatomic1:armhf (4.9.2-10+b1) ...
Setting up libasan1:armhf (4.9.2-10+b1) ...
Setting up libubsan0:armhf (4.9.2-10+b1) ...
Setting up libisl13:armhf (0.14-2) ...
Setting up cpp-4.9 (4.9.2-10+b1) ...
Setting up libgcc-4.9-dev:armhf (4.9.2-10+b1) ...
Setting up gcc-4.9 (4.9.2-10+b1) ...
Setting up libstdc++-4.9-dev:armhf (4.9.2-10+b1) ...
Setting up g++-4.9 (4.9.2-10+b1) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up libssl1.0.0:armhf (1.0.2a-1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.3-2) ...
Setting up libnettle4:armhf (2.7.1-5) ...
Setting up libhogweed2:armhf (2.7.1-5) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libp11-kit0:armhf (0.23.1-2) ...
Setting up libtasn1-6:armhf (4.5-2) ...
Setting up libgnutls-deb0-28:armhf (3.3.15-2) ...
Setting up libkeyutils1:armhf (1.5.9-5) ...
Setting up libkrb5support0:armhf (1.12.1+dfsg-19) ...
Setting up libk5crypto3:armhf (1.12.1+dfsg-19) ...
Setting up libkrb5-3:armhf (1.12.1+dfsg-19) ...
Setting up libgssapi-krb5-2:armhf (1.12.1+dfsg-19) ...
Setting up libidn11:armhf (1.30-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-13) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-13) ...
Setting up libldap-2.4-2:armhf (2.4.40+dfsg-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up libexpat1:armhf (2.1.0-6) ...
Setting up libfreetype6:armhf (2.5.2-4) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.34-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
Setting up libfontconfig1:armhf (2.11.0-6.3) ...
Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
Setting up libpixman-1-0:armhf (0.32.6-3) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1) ...
Setting up libxcb1:armhf (1.10-3) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxcb-render0:armhf (1.10-3) ...
Setting up libxcb-shm0:armhf (1.10-3) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.14.0-2.1) ...
Setting up libglib2.0-0:armhf (2.44.0-2) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
Setting up libcurl3:armhf (7.42.1-2) ...
Setting up libdatrie1:armhf (0.2.9-1) ...
Setting up libgfortran3:armhf (4.9.2-10+b1) ...
Setting up libgraphite2-3:armhf (1.2.4-3) ...
Setting up libharfbuzz0b:armhf (0.9.40-2) ...
Setting up x11-common (1:7.7+9) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.9-1) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libthai-data (0.1.22-1) ...
Setting up libthai0:armhf (0.1.22-1) ...
Setting up libpango-1.0-0:armhf (1.36.8-3) ...
Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ...
Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (2:8.35-3.3) ...
Setting up libsm6:armhf (2:1.2.2-1) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-2) ...
Setting up libjpeg62-turbo:armhf (1:1.3.1-12) ...
Setting up libtiff5:armhf (4.0.3-13) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.6:armhf (8.6.4+dfsg-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.3-2) ...
Setting up cdbs (0.4.130) ...
Setting up cpp (4:4.9.2-3) ...
Setting up gettext (0.19.3-2) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150101) ...
Setting up gcc (4:4.9.2-3) ...
Setting up libgfortran-4.9-dev:armhf (4.9.2-10+b1) ...
Setting up gfortran-4.9 (4.9.2-10+b1) ...
Setting up gfortran (4:4.9.2-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-7) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.3.1-12) ...
Setting up libjpeg-dev (1:1.3.1-12) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9+20140913-1) ...
Setting up libncurses5-dev:armhf (5.9+20140913-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre3-dev:armhf (2:8.35-3.3) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libpng12-dev:armhf (1.2.50-2) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up zip (3.0-8) ...
Setting up unzip (6.0-16) ...
Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Setting up r-base-core (3.2.0-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.2.0-2) ...
Setting up sbuild-build-depends-r-bioc-affyio-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
Processing triggers for systemd (215-17) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10+b1 gcc-4.9_4.9.2-10+b1 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10+b1 libstdc++6_4.9.2-10+b1 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 cdbs_0.4.130 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-3 cpp-4.9_4.9.2-10+b1 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.34-1 g++_4:4.9.2-2 g++-4.9_4.9.2-10+b1 gcc_4:4.9.2-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10+b1 gcc-4.9-base_4.9.2-10+b1 gettext_0.19.3-2 gettext-base_0.19.3-2 gfortran_4:4.9.2-3 gfortran-4.9_4.9.2-10+b1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10+b1 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10+b1 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libbz2-dev_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcairo2_1.14.0-2.1 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.42.1-2 libdatrie1_0.2.9-1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libfontconfig1_2.11.0-6.3 libfreetype6_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10+b1 libgcc1_1:4.9.2-10+b1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran-4.9-dev_4.9.2-10+b1 libgfortran3_4.9.2-10+b1 libglib2.0-0_2.44.0-2 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.15-2 libgomp1_4.9.2-10+b1 libgpg-error0_1.17-3 libgraphite2-3_1.2.4-3 libgssapi-krb5-2_1.12.1+dfsg-19 libharfbuzz0b_0.9.40-2 libhogweed2_2.7.1-5 libice6_2:1.0.9-1 libidn11_1.30-1 libisl10_0.12.2-2 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-dev_1:1.3.1-12 libjpeg62-turbo_1:1.3.1-12 libjpeg62-turbo-dev_1:1.3.1-12 libk5crypto3_1.12.1+dfsg-19 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkrb5-3_1.12.1+dfsg-19 libkrb5support0_1.12.1+dfsg-19 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.40+dfsg-1 liblocale-gettext-perl_1.05-8+b1 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncurses5-dev_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnettle4_2.7.1-5 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.35-3.3 libpcre3-dev_2:8.35-3.3 libpcrecpp0_2:8.35-3.3 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2 libpng12-dev_1.2.50-2 libprocps3_2:3.3.9-9 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 librtmp1_2.4+20150115.gita107cef-1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsm6_2:1.2.2-1 libsmartcols1_2.25.2-6 libss2_1.42.12-1.1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2a-1 libstdc++-4.9-dev_4.9.2-10+b1 libstdc++6_4.9.2-10+b1 libsystemd0_215-17 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.22-1 libthai0_0.1.22-1 libtiff5_4.0.3-13 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140913-1 libtinfo5_5.9+20140913-1 libtk8.6_8.6.4+dfsg-2 libubsan0_4.9.2-10+b1 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3 libxcb-shm0_1.10-3 libxcb1_1.10-3 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.1+dfsg1-5 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 r-base-core_3.2.0-2 r-base-dev_3.2.0-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-affyio-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 ucf_3.0030 udev_215-17 unzip_6.0-16 util-linux_2.25.2-6 x11-common_1:7.7+9 xdg-utils_1.1.0~rc1+git20111210-7.4 xz-utils_5.1.1alpha+20120614-2 zip_3.0-8 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat May 9 21:23:49 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-affyio_1.36.0-1.dsc
dpkg-source: info: extracting r-bioc-affyio in r-bioc-affyio-1.36.0
dpkg-source: info: unpacking r-bioc-affyio_1.36.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-affyio_1.36.0-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
OLDPWD=/usr/share/debootstrap/scripts
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-6a2aacea-6940-44b5-88d7-c0347cc147ab
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 43413 22
SSH_CONNECTION=172.17.0.6 43413 172.17.2.3 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-affyio
dpkg-buildpackage: source version 1.36.0-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-affyio-1.36.0
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.0-2)" >> debian/r-bioc-affyio.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Sat, 09 May 2015 23:21:28 +0200 \"" \
; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Sat, 09 May 2015 23:21:28 +0200 \"" \
; \
fi
* installing *source* package 'affyio' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for main in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
checking for pthread_create in -lpthread... yes
checking if we can use pthreads... yes
checking if PTHREAD_STACK_MIN is defined... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fread_functions.c -o fread_functions.o
fread_functions.c: In function 'gzread_int32':
fread_functions.c:414:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(int)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_uint32':
fread_functions.c:439:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned int)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_int16':
fread_functions.c:458:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(short)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_uint16':
fread_functions.c:476:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned short)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_float32':
fread_functions.c:497:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(float)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_char':
fread_functions.c:513:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(char)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_uchar':
fread_functions.c:529:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned char)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_double64':
fread_functions.c:547:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream, destination,sizeof(double)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_int32':
fread_functions.c:575:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(int)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_uint32':
fread_functions.c:600:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned int)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_int16':
fread_functions.c:620:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(short)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_uint16':
fread_functions.c:636:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned short)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_float32':
fread_functions.c:656:20: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(float)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_char':
fread_functions.c:673:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(char)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_uchar':
fread_functions.c:690:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream,destination,sizeof(unsigned char)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
fread_functions.c: In function 'gzread_be_double64':
fread_functions.c:706:19: warning: passing argument 1 of 'gzread' from incompatible pointer type
result = gzread(instream, destination,sizeof(double)*n);
^
In file included from fread_functions.h:12:0,
from fread_functions.c:10:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init_package.c -o init_package.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_abatch.c -o read_abatch.o
read_abatch.c: In function 'gz_get_detailed_header_info':
read_abatch.c:1989:15: warning: assignment from incompatible pointer type
currentFile = open_gz_cel_file(filename);
^
read_abatch.c:1991:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type
gzAdvanceToSection(currentFile,"[HEADER]",buffer);
^
read_abatch.c:1439:13: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){
^
read_abatch.c:1993:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"Cols",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:1998:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"Rows",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2003:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"GridCornerUL",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2009:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"GridCornerUR",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2015:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"GridCornerLR",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2021:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"GridCornerLL",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2027:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"DatHeader",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2059:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"Algorithm",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2067:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"AlgorithmParameters",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2072:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(currentFile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gz_get_masks_outliers':
read_abatch.c:2100:15: warning: assignment from incompatible pointer type
currentFile = open_gz_cel_file(filename);
^
read_abatch.c:2104:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type
gzAdvanceToSection(currentFile,"[MASKS]",buffer);
^
read_abatch.c:1439:13: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){
^
read_abatch.c:2105:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"NumberCells=",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2109:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"CellHeader=",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2118:38: warning: passing argument 3 of 'ReadgzFileLine' from incompatible pointer type
ReadgzFileLine(buffer, BUF_SIZE, currentFile);
^
read_abatch.c:1354:13: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void ReadgzFileLine(char *buffer, int buffersize, gzFile currentFile){
^
read_abatch.c:2133:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type
gzAdvanceToSection(currentFile,"[OUTLIERS]",buffer);
^
read_abatch.c:1439:13: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){
^
read_abatch.c:2134:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"NumberCells=",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2138:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type
gzfindStartsWith(currentFile,"CellHeader=",buffer);
^
read_abatch.c:1416:14: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){
^
read_abatch.c:2146:38: warning: passing argument 3 of 'ReadgzFileLine' from incompatible pointer type
ReadgzFileLine(buffer, BUF_SIZE, currentFile);
^
read_abatch.c:1354:13: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
static void ReadgzFileLine(char *buffer, int buffersize, gzFile currentFile){
^
read_abatch.c:2158:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(currentFile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'isgzBinaryCelFile':
read_abatch.c:3141:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_abatch.c:3148:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3153:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3159:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3164:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3169:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gzread_binary_header':
read_abatch.c:3192:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_abatch.c:3247:15: warning: passing argument 1 of 'gzread' from incompatible pointer type
if (!gzread(infile,this_header->header,sizeof(char)*this_header->header_len)){
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1313:21: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
^
read_abatch.c:3289:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gzread_binarycel_file_intensities':
read_abatch.c:3591:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3597:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct FILE *'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3607:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gzread_binarycel_file_stddev':
read_abatch.c:3644:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3654:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gzread_binarycel_file_npixels':
read_abatch.c:3692:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->infile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct FILE *'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c:3702:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gz_binary_apply_masks':
read_abatch.c:3735:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(my_header->infile,my_header->n_cells*sizeofrecords,SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct FILE *'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_abatch.c:3748:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(my_header->gzinfile,my_header->n_masks*sizeof(cur_loc),SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_abatch.c:3761:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(my_header->gzinfile,my_header->n_outliers*sizeof(cur_loc),SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_abatch.c:3764:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_abatch.c: In function 'gzbinary_get_masks_outliers':
read_abatch.c:3797:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(my_header->gzinfile,my_header->n_cells*sizeofrecords,SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_abatch.c:3827:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(my_header->gzinfile);
^
In file included from fread_functions.h:12:0,
from read_abatch.c:164:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_bpmap.c -o read_bpmap.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_cdf_xda.c -o read_cdf_xda.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_cdffile2.c -o read_cdffile2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'isgzGenericCelFile':
read_celfile_generic.c:1067:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1074:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c:1080:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c:1089:12: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c:1094:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzgeneric_get_header_info':
read_celfile_generic.c:1115:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1151:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzgeneric_get_detailed_header_info':
read_celfile_generic.c:1175:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1633:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'check_gzgeneric_cel_file':
read_celfile_generic.c:1661:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1701:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzread_genericcel_file_intensities':
read_celfile_generic.c:1726:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1745:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzread_genericcel_file_stddev':
read_celfile_generic.c:1777:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1790:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1802:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzread_genericcel_file_npixels':
read_celfile_generic.c:1831:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1844:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1848:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1861:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers':
read_celfile_generic.c:1896:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:1910:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1915:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1920:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1939:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:1960:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_celfile_generic.c: In function 'gzgeneric_apply_masks':
read_celfile_generic.c:1991:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_celfile_generic.c:2012:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:2017:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:2022:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:2038:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_celfile_generic.c:2056:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_clf.c -o read_clf.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_generic.c -o read_generic.o
read_generic.c: In function 'gzread_ASTRING_fw':
read_generic.c:927:9: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(instream, length-destination->len, SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_generic.c:50:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_generic.c: In function 'gzread_AWSTRING_fw':
read_generic.c:973:9: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(instream, length-2*destination->len, SEEK_CUR);
^
In file included from fread_functions.h:12:0,
from read_generic.c:50:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_generic.c: In function 'gzRead_Generic':
read_generic.c:1508:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(cur_file_name, "rb")) == NULL)
^
read_generic.c:1540:14: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from fread_functions.h:12:0,
from read_generic.c:50:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o
read_multichannel_celfile_generic.c: In function 'isgzGenericMultiChannelCelFile':
read_multichannel_celfile_generic.c:620:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:627:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c:633:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c:642:12: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c:647:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzmultichannel_determine_number_channels':
read_multichannel_celfile_generic.c:677:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:701:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:704:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzmultichannel_determine_channel_name':
read_multichannel_celfile_generic.c:729:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:741:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:751:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_intensities_multichannel':
read_multichannel_celfile_generic.c:778:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:793:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:807:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_stddev_multichannel':
read_multichannel_celfile_generic.c:834:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:849:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:856:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:867:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_npixels_multichannel':
read_multichannel_celfile_generic.c:896:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:912:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:919:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:923:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:936:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzgeneric_get_masks_outliers_multichannel':
read_multichannel_celfile_generic.c:965:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:981:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile,next_group,SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:989:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:994:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:999:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1018:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1039:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
read_multichannel_celfile_generic.c: In function 'gzgeneric_apply_masks_multichannel':
read_multichannel_celfile_generic.c:1069:15: warning: assignment from incompatible pointer type
if ((infile = gzopen(filename, "rb")) == NULL)
^
read_multichannel_celfile_generic.c:1090:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1095:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1100:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1116:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type
gzseek(infile, my_data_set.file_pos_last, SEEK_SET);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1726:28: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
^
read_multichannel_celfile_generic.c:1134:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type
gzclose(infile);
^
In file included from read_multichannel_celfile_generic.c:43:0:
/usr/include/zlib.h:1511:24: note: expected 'gzFile' but argument is of type 'struct gzFile_s **'
ZEXTERN int ZEXPORT gzclose OF((gzFile file));
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -g -O2 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read_pgf.c -o read_pgf.o
read_pgf.c: In function 'pgf_count_probeset_types':
read_pgf.c:1265:28: warning: assignment from incompatible pointer type
my_pgf->probesets->current= my_pgf->probesets->current->next;
^
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -lpthread -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Entering directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library/affyio/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (affyio)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library/affyio/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-affyio/usr/lib/R/site-library/affyio/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-affyio/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-affyio/usr/share/lintian/overrides/r-bioc-affyio; \
fi
Adding cdbs dependencies to debian/r-bioc-affyio.substvars
dh_installdirs -pr-bioc-affyio
rm -rf debian/r-bioc-affyio/usr/lib/R/site-library/affyio/LICENSE
dh_installdocs -pr-bioc-affyio
dh_installexamples -pr-bioc-affyio
dh_installman -pr-bioc-affyio
dh_installinfo -pr-bioc-affyio
dh_installmenu -pr-bioc-affyio
dh_installcron -pr-bioc-affyio
dh_installinit -pr-bioc-affyio
dh_installdebconf -pr-bioc-affyio
dh_installemacsen -pr-bioc-affyio
dh_installcatalogs -pr-bioc-affyio
dh_installpam -pr-bioc-affyio
dh_installlogrotate -pr-bioc-affyio
dh_installlogcheck -pr-bioc-affyio
dh_installchangelogs -pr-bioc-affyio
dh_installudev -pr-bioc-affyio
dh_lintian -pr-bioc-affyio
dh_bugfiles -pr-bioc-affyio
dh_install -pr-bioc-affyio
dh_link -pr-bioc-affyio
dh_installmime -pr-bioc-affyio
dh_installgsettings -pr-bioc-affyio
dh_strip -pr-bioc-affyio
dh_compress -pr-bioc-affyio
dh_fixperms -pr-bioc-affyio
dh_makeshlibs -pr-bioc-affyio
dh_installdeb -pr-bioc-affyio
dh_perl -pr-bioc-affyio
dh_shlibdeps -pr-bioc-affyio
dh_gencontrol -pr-bioc-affyio
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-affyio
dh_builddeb -pr-bioc-affyio
dpkg-deb: building package `r-bioc-affyio' in `../r-bioc-affyio_1.36.0-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-affyio_1.36.0-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-affyio-1.36.0
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150515-0523
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-affyio_1.36.0-1_armhf.changes:
─────────────────────────────────────
Format: 1.8
Date: Sat, 09 May 2015 23:21:28 +0200
Source: r-bioc-affyio
Binary: r-bioc-affyio
Architecture: armhf
Version: 1.36.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-affyio - BioConductor tools for parsing Affymetrix data files
Changes:
r-bioc-affyio (1.36.0-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
9b29294fe1d0392b25dc78e32df945fbb901f9fb 64338 r-bioc-affyio_1.36.0-1_armhf.deb
Checksums-Sha256:
e5d6a3804287f65a36e5af8a8498d54fe8d587a4c361e034d0b4065dd642a17a 64338 r-bioc-affyio_1.36.0-1_armhf.deb
Files:
085dcb5de082276c66e7b95f616c50ac 64338 gnu-r optional r-bioc-affyio_1.36.0-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-affyio_1.36.0-1_armhf.deb
────────────────────────────────
new debian package, version 2.0.
size 64338 bytes: control archive=1297 bytes.
587 bytes, 13 lines control
1780 bytes, 23 lines md5sums
Package: r-bioc-affyio
Version: 1.36.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 176
Depends: r-base-core (>= 3.2.0-2), libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: gnu-r
Priority: optional
Homepage: http://bioconductor.org/packages/release/bioc/html/affyio.html
Description: BioConductor tools for parsing Affymetrix data files
This BioConductor package provides routines for parsing Affymetrix data
files based upon file format information. Primary focus is on accessing
the CEL and CDF file formats.
drwxr-xr-x root/root 0 2015-05-15 05:23 ./
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/
drwxr-xr-x root/root 0 2015-05-15 05:22 ./usr/lib/
drwxr-xr-x root/root 0 2015-05-15 05:22 ./usr/lib/R/
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/
-rw-r--r-- root/root 46 2015-05-15 05:22 ./usr/lib/R/site-library/affyio/NAMESPACE
-rw-r--r-- root/root 595 2015-05-15 05:22 ./usr/lib/R/site-library/affyio/DESCRIPTION
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/Meta/
-rw-r--r-- root/root 714 2015-05-15 05:22 ./usr/lib/R/site-library/affyio/Meta/package.rds
-rw-r--r-- root/root 447 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/Meta/Rd.rds
-rw-r--r-- root/root 461 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/Meta/hsearch.rds
-rw-r--r-- root/root 215 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/Meta/links.rds
-rw-r--r-- root/root 205 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/Meta/nsInfo.rds
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/libs/
-rw-r--r-- root/root 157716 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/libs/affyio.so
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/R/
-rw-r--r-- root/root 1056 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/R/affyio
-rw-r--r-- root/root 2871 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/R/affyio.rdb
-rw-r--r-- root/root 366 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/R/affyio.rdx
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/
-rw-r--r-- root/root 201 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/paths.rds
-rw-r--r-- root/root 9014 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/affyio.rdb
-rw-r--r-- root/root 311 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/affyio.rdx
-rw-r--r-- root/root 261 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/AnIndex
-rw-r--r-- root/root 162 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/help/aliases.rds
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/html/
-rw-r--r-- root/root 1653 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/html/00Index.html
-rw-r--r-- root/root 1319 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/html/R.css
-rw-r--r-- root/root 322 2015-05-15 05:23 ./usr/lib/R/site-library/affyio/INDEX
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/share/
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-05-15 05:23 ./usr/share/doc/r-bioc-affyio/
-rw-r--r-- root/root 285 2013-09-12 08:59 ./usr/share/doc/r-bioc-affyio/README.test
-rw-r--r-- root/root 560 2013-10-18 08:57 ./usr/share/doc/r-bioc-affyio/copyright
-rw-r--r-- root/root 318 2015-05-09 21:22 ./usr/share/doc/r-bioc-affyio/changelog.Debian.gz
-rw-r--r-- root/root 162 2015-04-16 20:13 ./usr/share/doc/r-bioc-affyio/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 1232
Build-Time: 118
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 470
Job: r-bioc-affyio_1.36.0-1
Machine Architecture: armhf
Package: r-bioc-affyio
Package-Time: 644
Source-Version: 1.36.0-1
Space: 1232
Status: successful
Version: 1.36.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150515-0523
Build needed 00:10:44, 1232k disc space