Build log for r-base (4.2.1-1) on armhf

r-base → 4.2.1-1 → armhf → 2022-06-29 15:45:43

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03

+==============================================================================+
| r-base 4.2.1-1 (armhf)                       Wed, 29 Jun 2022 13:08:14 +0000 |
+==============================================================================+

Package: r-base
Version: 4.2.1-1
Source Version: 4.2.1-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-e97de58b-e55e-4d8d-b0a2-8bb5d3ab9060' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.1 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.0 MB]
Fetched 27.1 MB in 28s (955 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-base' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/edd/r-base.git
Please use:
git clone https://salsa.debian.org/edd/r-base.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.7 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-base 4.2.1-1 (dsc) [2952 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-base 4.2.1-1 (tar) [37.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-base 4.2.1-1 (diff) [98.2 kB]
Fetched 37.7 MB in 3s (11.0 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-base-KxbnLE/r-base-4.2.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-base-KxbnLE' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Xl1nOJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Xl1nOJ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2673 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12823 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion
Filtered Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-base-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Sources [807 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ Packages [834 B]
Fetched 2974 B in 1s (4120 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-base build dependencies (apt-based resolver)
------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bison
  bsdextrautils ca-certificates ca-certificates-java debhelper default-jdk
  default-jdk-headless default-jre default-jre-headless dh-autoreconf
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11
  gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  groff-base icu-devtools intltool-debian java-common libapache-pom-java
  libarchive-zip-perl libasound2 libasound2-data libavahi-client3
  libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev
  libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java
  libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev
  libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0
  libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2
  libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl
  libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev
  libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1
  libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0
  libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu71
  libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 liblerc-dev
  liblerc3 libllvm14 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0
  libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1
  libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev
  libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib
  libpython3.10-minimal libpython3.10-stdlib libreadline-dev librtmp1
  libselinux1-dev libsensors-config libsensors5 libsepol-dev libsigsegv2
  libsm-dev libsm6 libsombok3 libssh2-1 libsub-override-perl libsynctex2
  libtcl8.6 libteckit0 libtexlua53-5 libtexluajit2 libtext-unidecode-perl
  libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev
  libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl
  libunwind8 libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1
  libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
  libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev
  libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2
  libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1
  libxt-dev libxt6 libxtst6 libxxf86vm1 libz3-4 libzzip-0-13 lmodern m4 man-db
  media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre
  openjdk-11-jre-headless openssl pango1.0-tools pkg-config po-debconf
  preview-latex-style python3 python3-distutils python3-lib2to3
  python3-minimal python3.10 python3.10-minimal sensible-utils sgml-base
  t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf
  uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth
  xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bison-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc
  libcoarrays-dev groff libasound2-plugins alsa-utils liblapack-doc
  libcairo2-doc libavalon-framework-java libcommons-logging-java-doc
  libexcalibur-logkit-java liblog4j1.2-java cups-common libcurl4-doc
  libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev
  libdatrie-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc
  libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils
  libice-doc icu-doc liblcms2-utils liblzma-doc libencode-hanextra-perl
  libpod2-base-perl ncurses-doc libpango1.0-doc pcscd readline-doc lm-sensors
  libsm-doc libthai-doc libtool-doc gcj-jdk libx11-doc libxcb-doc libxext-doc
  libxt-doc m4-doc apparmor less www-browser default-mta
  | mail-transport-agent inews openjdk-11-demo openjdk-11-source visualvm
  libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho
  fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic graphicsmagick
  libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv
  python3.10-doc binfmt-support sgml-base-doc tcl-tclreadline tcl8.6-doc
  ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec chktex
  dvidvi dvipng fragmaster lacheck latexdiff latexmk purifyeps xindy cm-super
  texlive-fonts-extra-doc texlive-fonts-recommended-doc texlive-latex-base-doc
  python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc
  texlive-science texlive-latex-recommended-doc texlive-pstricks dot2tex
  prerex texlive-pictures-doc vprerex tk8.6-doc
Recommended packages:
  curl | wget | lynx alsa-ucm-conf alsa-topology-conf bzip2-doc dbus
  libarchive-cpio-perl shared-mime-info xdg-user-dirs javascript-common
  libgpm2 libpng-tools publicsuffix libltdl-dev mesa-vulkan-drivers
  | vulkan-icd libwww-perl libxml-sax-expat-perl libatk-wrapper-java-jni
  fonts-dejavu-extra libmail-sendmail-perl dvisvgm ghostscript
  libfile-homedir-perl liblog-log4perl-perl libyaml-tiny-perl ruby
  fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
  fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa
  fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-go fonts-junicode fonts-lato fonts-linuxlibertine
  fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono
  fonts-oflb-asana-math fonts-open-sans fonts-roboto-unhinted fonts-sil-charis
  fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-sil-gentiumplus-compact fonts-stix texlive-fonts-extra-links tex-gyre
  tipa libspreadsheet-parseexcel-perl tk xterm | x-terminal-emulator
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bison
  bsdextrautils ca-certificates ca-certificates-java debhelper default-jdk
  default-jdk-headless default-jre default-jre-headless dh-autoreconf
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11
  gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  groff-base icu-devtools intltool-debian java-common libapache-pom-java
  libarchive-zip-perl libasound2 libasound2-data libavahi-client3
  libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev
  libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java
  libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev
  libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0
  libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2
  libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl
  libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev
  libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1
  libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0
  libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu71
  libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 liblerc-dev
  liblerc3 libllvm14 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0
  libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1
  libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev
  libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib
  libpython3.10-minimal libpython3.10-stdlib libreadline-dev librtmp1
  libselinux1-dev libsensors-config libsensors5 libsepol-dev libsigsegv2
  libsm-dev libsm6 libsombok3 libssh2-1 libsub-override-perl libsynctex2
  libtcl8.6 libteckit0 libtexlua53-5 libtexluajit2 libtext-unidecode-perl
  libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev
  libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl
  libunwind8 libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1
  libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
  libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev
  libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2
  libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1
  libxt-dev libxt6 libxtst6 libxxf86vm1 libz3-4 libzzip-0-13 lmodern m4 man-db
  media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre
  openjdk-11-jre-headless openssl pango1.0-tools pkg-config po-debconf
  preview-latex-style python3 python3-distutils python3-lib2to3
  python3-minimal python3.10 python3.10-minimal
  sbuild-build-depends-r-base-dummy sensible-utils sgml-base t1utils tcl8.6
  tcl8.6-dev tex-common texinfo texlive-base texlive-binaries
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf
  uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth
  xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
0 upgraded, 303 newly installed, 0 to remove and 6 not upgraded.
Need to get 1031 MB of archives.
After this operation, 2727 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Xl1nOJ/apt_archive ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1124 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.5-1+b1 [815 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.5-1+b1 [1637 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1+b1 [38.9 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.5-1+b1 [1626 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.5-1+b1 [542 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1+b1 [21.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1+b1 [38.4 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf tex-common all 6.17 [53.6 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bash-completion all 1:2.11-6 [234 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.3-8 [1371 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf bison armhf 2:3.8.2+dfsg-1 [1114 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf java-common all 0.72 [14.5 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-6+b1 [124 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-6+b1 [55.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.14.0-1+b2 [210 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-6+b1 [58.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libcups2 armhf 2.4.2-1 [311 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libnspr4 armhf 2:4.34-1 [90.5 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libnss3 armhf 2:3.79-1 [1099 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libasound2-data all 1.2.6.1-2 [38.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libasound2 armhf 1.2.6.1-2+b1 [319 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.2-2 [1231 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpcsclite1 armhf 1.9.8-1 [57.8 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jre-headless armhf 11.0.14.1+1-1 [32.8 MB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf default-jre-headless armhf 2:1.11-72+b4 [11.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libglvnd0 armhf 1.4.0-1 [55.1 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libdrm-common all 2.4.110-1+rpi1 [15.5 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.110-1+rpi1 [40.7 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libglapi-mesa armhf 22.0.5-1+rpi1 [84.2 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.7.5-1 [203 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.14-3 [117 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libxfixes3 armhf 1:6.0.0-1 [21.0 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.110-1+rpi1 [28.1 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.110-1+rpi1 [25.6 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.110-1+rpi1 [29.7 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.4-4+rpi1 [19.5 MB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libvulkan1 armhf 1.3.216.0-1 [97.1 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 22.0.5-1+rpi1 [5303 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libglx-mesa0 armhf 22.0.5-1+rpi1 [169 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libglx0 armhf 1.4.0-1 [26.3 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libgl1 armhf 1.4.0-1 [105 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libgif7 armhf 5.2.1-2.5 [44.7 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxtst6 armhf 2:1.2.3-1.1 [26.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jre armhf 11.0.14.1+1-1 [149 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf default-jre armhf 2:1.11-72+b4 [1044 B]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jdk-headless armhf 11.0.14.1+1-1 [173 MB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf default-jdk-headless armhf 2:1.11-72+b4 [1100 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jdk armhf 11.0.14.1+1-1 [7244 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf default-jdk armhf 2:1.11-72+b4 [1056 B]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-2+rpi1 [238 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.3.0-1+rpi1 [280 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.3.0-1+rpi1 [7580 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libgirepository-1.0-1 armhf 1.72.0-1+b1 [83.8 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf gir1.2-glib-2.0 armhf 1.72.0-1+b1 [155 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf gir1.2-freedesktop armhf 1.72.0-1+b1 [34.2 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.7.4-1+b1 [1154 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.7+ds-1 [214 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.7+ds-1 [70.1 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.7+ds-1 [60.1 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libpangoxft-1.0-0 armhf 1.50.7+ds-1 [53.8 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf gir1.2-pango-1.0 armhf 1.50.7+ds-1 [67.1 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libapache-pom-java all 18-1 [4676 B]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf uuid-dev armhf 2.38-4 [95.1 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libblkid-dev armhf 2.38-4 [221 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libbrotli-dev armhf 1.0.9-2+b2 [271 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libcairo-gobject2 armhf 1.16.0-5 [124 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-5 [153 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4+b2 [183 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libfreetype-dev armhf 2.12.1+dfsg-3 [516 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6-dev armhf 2.12.1+dfsg-3 [70.8 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig-dev armhf 2.13.1-4.4 [349 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1-dev armhf 2.13.1-4.4 [238 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf x11proto-dev all 2022.1-1 [599 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf x11proto-core-dev all 2022.1-1 [3528 B]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libxcb1-dev armhf 1.14-3 [171 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libx11-dev armhf 2:1.7.5-1 [779 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libxrender-dev armhf 1:0.9.10-1.1 [37.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libxext-dev armhf 2:1.3.4-1 [102 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-dev armhf 0.40.0-1 [482 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0-dev armhf 1.14-3 [113 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0-dev armhf 1.14-3 [102 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libffi-dev armhf 3.4.2-4 [61.7 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-data all 2.72.2-2 [1218 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-bin armhf 2.72.2-2 [140 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-dev-bin armhf 2.72.2-2 [184 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsepol-dev armhf 3.4-2 [319 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1+b2 [208 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1+b2 [200 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1+b2 [53.7 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1+b2 [637 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libselinux1-dev armhf 3.4-1 [162 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libmount-dev armhf 2.38-4 [79.9 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-dev armhf 2.72.2-2 [1501 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libcairo2-dev armhf 1.16.0-5 [614 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libcommons-logging-java all 1.2-3 [62.4 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.47.0-1+b1 [65.3 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.83.1-2 [317 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.83.1-2 [394 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf libdatrie-dev armhf 0.2.13-2+b2 [15.2 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.12-1 [51.8 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libfribidi-dev armhf 1.0.8-2.1 [103 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-dev armhf 1.3.14-1 [24.0 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz-icu0 armhf 2.7.4-1+b1 [1132 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz-gobject0 armhf 2.7.4-1+b1 [1145 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz-dev armhf 2.7.4-1+b1 [1560 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf libjbig-dev armhf 2.1-3.1+b2 [27.7 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf libkpathsea6 armhf 2022.20220321.62855-4 [165 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf liblerc3 armhf 3.0+ds-1 [92.7 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf liblerc-dev armhf 3.0+ds-1 [102 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf libmime-charset-perl all 1.012.2-1 [35.4 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf libthai-dev armhf 0.1.29-1 [21.6 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf libxft-dev armhf 2.3.4-1 [60.6 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf pango1.0-tools armhf 1.50.7+ds-1 [66.4 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf libpango1.0-dev armhf 1.50.7+ds-1 [181 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf libptexenc1 armhf 2022.20220321.62855-4 [61.9 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1.2-1.2 [120 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf libsombok3 armhf 2.4.0-2+b2 [27.4 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf libsynctex2 armhf 2022.20220321.62855-4 [68.0 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf libtexlua53-5 armhf 2022.20220321.62855-4 [102 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf libtexluajit2 armhf 2022.20220321.62855-4 [208 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf libtext-unidecode-perl all 1.30-1.1 [102 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-2 [290 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf libtiffxx5 armhf 4.4.0-2 [145 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf libtiff-dev armhf 4.4.0-2 [401 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf libtiff5-dev armhf 4.4.0-2 [141 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf libunicode-linebreak-perl armhf 0.0.20190101-1+b3 [97.8 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf libunwind8 armhf 1.3.2-2 [47.3 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.14-1 [165 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf libxfont2 armhf 1:2.0.5-1 [119 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf libxkbfile1 armhf 1:1.1.0-1 [66.4 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf libxml-libxml-perl armhf 2.0207+dfsg+really+2.0134-1+b1 [318 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf libxrandr2 armhf 2:1.5.2-2 [35.5 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf libxss-dev armhf 1:1.2.3-1 [23.0 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf libxt-dev armhf 1:1.2.1-1 [371 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf xfonts-encodings all 1:1.0.4-2.1 [573 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf lmodern all 2.005-1 [9480 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf mpack armhf 1.6-18 [34.4 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf preview-latex-style all 12.2-1 [201 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf tcl8.6 armhf 8.6.12+dfsg-1 [123 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf tcl8.6-dev armhf 8.6.12+dfsg-1 [922 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf texinfo armhf 6.8-4+b1 [1811 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf texlive-binaries armhf 2022.20220321.62855-4 [7109 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf texlive-base all 2022.20220405-2 [21.5 MB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-base all 2022.20220405-2 [1161 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf texlive-luatex all 2022.20220405-2 [18.2 MB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf texlive-plain-generic all 2022.20220405-3 [27.6 MB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf texlive-extra-utils all 2022.20220405-3 [52.4 MB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf texlive-fonts-extra all 2022.20220405-3 [490 MB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf texlive-fonts-recommended all 2022.20220405-2 [5004 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-recommended all 2022.20220405-2 [14.5 MB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf texlive-pictures all 2022.20220405-2 [8755 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-extra all 2022.20220405-3 [14.6 MB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf tk8.6 armhf 8.6.12-1 [72.2 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-dev armhf 8.6.12-1 [705 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf x11-xkb-utils armhf 7.7+7 [140 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf xfonts-base all 1:1.0.5 [5897 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf xkb-data all 2.35.1-1 [764 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf xserver-common all 2:21.1.3-2 [2412 kB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf xvfb armhf 2:21.1.3-2+b2 [3027 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpython3.10-minimal:armhf (3.10.5-1+b1) ...
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Creating config file /etc/papersize with new version
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Setting up libdrm-nouveau2:armhf (2.4.110-1+rpi1) ...
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Setting up python3.10 (3.10.5-1+b1) ...
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Setting up python3 (3.10.4-1+b1) ...
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Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gir1.2-harfbuzz-0.0:armhf (2.7.4-1+b1) ...
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libfreetype-dev:armhf (2.12.1+dfsg-3) ...
Setting up dh-autoreconf (20) ...
Setting up tex-common (6.17) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:armhf (1.14-3) ...
Setting up xfonts-base (1:1.0.5) ...
Setting up libxfixes3:armhf (1:6.0.0-1) ...
Setting up libcurl4-openssl-dev:armhf (7.83.1-2) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1+b3) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxrandr2:armhf (2:1.5.2-2) ...
Setting up libxcb-render0-dev:armhf (1.14-3) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up libxext-dev:armhf (2:1.3.4-1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcups2:armhf (2.4.2-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up lmodern (2.005-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up python3-lib2to3 (3.9.12-1) ...
Setting up libxrender-dev:armhf (1:0.9.10-1.1) ...
Setting up python3-distutils (3.9.12-1) ...
Setting up libglib2.0-dev-bin (2.72.2-2) ...
Setting up fontconfig (2.13.1-4.4) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libxmu6:armhf (2:1.1.3-3) ...
Setting up libglx-mesa0:armhf (22.0.5-1+rpi1) ...
Setting up libxi6:armhf (2:1.8-1) ...
Setting up libglx0:armhf (1.4.0-1) ...
Setting up libfontconfig-dev:armhf (2.13.1-4.4) ...
Setting up libxtst6:armhf (2:1.2.3-1.1) ...
Setting up preview-latex-style (12.2-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up libpango-1.0-0:armhf (1.50.7+ds-1) ...
Setting up debhelper (13.7.1) ...
Setting up libxaw7:armhf (2:1.0.14-1) ...
Setting up libxss-dev:armhf (1:1.2.3-1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libfreetype6-dev:armhf (2.12.1+dfsg-3) ...
Setting up libgl1:armhf (1.4.0-1) ...
Setting up libglib2.0-dev:armhf (2.72.2-2) ...
Setting up libxt-dev:armhf (1:1.2.1-1) ...
Setting up texinfo (6.8-4+b1) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2022.20220321.62855-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libcairo-gobject2:armhf (1.16.0-5) ...
Setting up libpangoft2-1.0-0:armhf (1.50.7+ds-1) ...
Setting up texlive-base (2022.20220405-2) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libpangocairo-1.0-0:armhf (1.50.7+ds-1) ...
Setting up libxft-dev:armhf (2.3.4-1) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-5) ...
Setting up tk8.6 (8.6.12-1) ...
Setting up libharfbuzz-dev:armhf (2.7.4-1+b1) ...
Setting up libfontconfig1-dev:armhf (2.13.1-4.4) ...
Setting up libpangoxft-1.0-0:armhf (1.50.7+ds-1) ...
Setting up texlive-luatex (2022.20220405-2) ...
Setting up x11-xkb-utils (7.7+7) ...
Setting up pango1.0-tools (1.50.7+ds-1) ...
Setting up texlive-plain-generic (2022.20220405-3) ...
Setting up gir1.2-pango-1.0:armhf (1.50.7+ds-1) ...
Setting up texlive-latex-base (2022.20220405-2) ...
Setting up texlive-extra-utils (2022.20220405-3) ...
Setting up texlive-fonts-extra (2022.20220405-3) ...
Setting up texlive-latex-recommended (2022.20220405-2) ...
Setting up texlive-pictures (2022.20220405-2) ...
Setting up tk8.6-dev:armhf (8.6.12-1) ...
Setting up texlive-fonts-recommended (2022.20220405-2) ...
Setting up libcairo2-dev:armhf (1.16.0-5) ...
Setting up xserver-common (2:21.1.3-2) ...
Setting up xvfb (2:21.1.3-2+b2) ...
Setting up texlive-latex-extra (2022.20220405-3) ...
Setting up libpango1.0-dev:armhf (1.50.7+ds-1) ...
Setting up default-jre-headless (2:1.11-72+b4) ...
Setting up openjdk-11-jre-headless:armhf (11.0.14.1+1-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jre:armhf (11.0.14.1+1-1) ...
Setting up openjdk-11-jdk-headless:armhf (11.0.14.1+1-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-72+b4) ...
Setting up default-jdk-headless (2:1.11-72+b4) ...
Setting up openjdk-11-jdk:armhf (11.0.14.1+1-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EC-ACC.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
done.
Setting up default-jdk (2:1.11-72+b4) ...
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
Processing triggers for tex-common (6.17) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38-4+rpi1 dpkg-dev_1.21.8+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.18.2-1+rpi1
Package versions: adduser_3.121 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6.1 bash-completion_1:2.11-6 binutils_2.38-4+rpi1 binutils-arm-linux-gnueabihf_2.38-4+rpi1 binutils-common_2.38-4+rpi1 bison_2:3.8.2+dfsg-1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 ca-certificates-java_20190909 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.2 default-jdk_2:1.11-72+b4 default-jdk-headless_2:1.11-72+b4 default-jre_2:1.11-72+b4 default-jre-headless_2:1.11-72+b4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.35-2 dpkg_1.21.8+rpi1 dpkg-dev_1.21.8+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lmodern_2.005-1 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-10-base_10.3.0-15+rpi1 gcc-11_11.3.0-1+rpi1 gcc-11-base_11.3.0-1+rpi1 gcc-12-base_12.1.0-2+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.3.0-1+rpi1 gir1.2-freedesktop_1.72.0-1+b1 gir1.2-glib-2.0_1.72.0-1+b1 gir1.2-harfbuzz-0.0_2.7.4-1+b1 gir1.2-pango-1.0_1.50.7+ds-1 gnupg_2.2.35-2 gnupg-l10n_2.2.35-2 gnupg-utils_2.2.35-2 gpg_2.2.35-2 gpg-agent_2.2.35-2 gpg-wks-client_2.2.35-2 gpg-wks-server_2.2.35-2 gpgconf_2.2.35-2 gpgsm_2.2.35-2 gpgv_2.2.35-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 java-common_0.72 krb5-locales_1.19.2-2 libacl1_2.3.1-1 libapache-pom-java_18-1 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libasan6_11.3.0-1+rpi1 libasound2_1.2.6.1-2+b1 libasound2-data_1.2.6.1-2 libassuan0_2.5.5-3 libatomic1_12.1.0-2+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libavahi-client3_0.8-6+b1 libavahi-common-data_0.8-6+b1 libavahi-common3_0.8-6+b1 libbinutils_2.38-4+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid-dev_2.38-4 libblkid1_2.38-4 libbrotli-dev_1.0.9-2+b2 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcairo-gobject2_1.16.0-5 libcairo-script-interpreter2_1.16.0-5 libcairo2_1.16.0-5 libcairo2-dev_1.16.0-5 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-2+rpi1 libcom-err2_1.46.5-2 libcommons-logging-java_1.2-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-4+rpi1 libctf0_2.38-4+rpi1 libcups2_2.4.2-1 libcurl4_7.83.1-2 libcurl4-openssl-dev_7.83.1-2 libdatrie-dev_0.2.13-2+b2 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.9 libdbus-1-3_1.14.0-1+b2 libdebconfclient0_0.263 libdebhelper-perl_13.7.1 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdpkg-perl_1.21.8+rpi1 libdrm-amdgpu1_2.4.110-1+rpi1 libdrm-common_2.4.110-1+rpi1 libdrm-nouveau2_2.4.110-1+rpi1 libdrm-radeon1_2.4.110-1+rpi1 libdrm2_2.4.110-1+rpi1 libedit2_3.1-20210910-1 libelf1_0.187-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi-dev_3.4.2-4 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontbox-java_1:1.8.16-2 libfontconfig-dev_2.13.1-4.4 libfontconfig1_2.13.1-4.4 libfontconfig1-dev_2.13.1-4.4 libfontenc1_1:1.1.4-1 libfreetype-dev_2.12.1+dfsg-3 libfreetype6_2.12.1+dfsg-3 libfreetype6-dev_2.12.1+dfsg-3 libfribidi-dev_1.0.8-2.1 libfribidi0_1.0.8-2.1 libgcc-11-dev_11.3.0-1+rpi1 libgcc-s1_12.1.0-2+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran-11-dev_11.3.0-1+rpi1 libgfortran5_12.1.0-2+rpi1 libgif7_5.2.1-2.5 libgirepository-1.0-1_1.72.0-1+b1 libgl1_1.4.0-1 libgl1-mesa-dri_22.0.5-1+rpi1 libglapi-mesa_22.0.5-1+rpi1 libglib2.0-0_2.72.2-2 libglib2.0-bin_2.72.2-2 libglib2.0-data_2.72.2-2 libglib2.0-dev_2.72.2-2 libglib2.0-dev-bin_2.72.2-2 libglvnd0_1.4.0-1 libglx-mesa0_22.0.5-1+rpi1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.4-2 libgomp1_12.1.0-2+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgraphite2-dev_1.3.14-1 libgssapi-krb5-2_1.19.2-2+b7 libharfbuzz-dev_2.7.4-1+b1 libharfbuzz-gobject0_2.7.4-1+b1 libharfbuzz-icu0_2.7.4-1+b1 libharfbuzz0b_2.7.4-1+b1 libhogweed6_3.7.3-1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.2-2 libisl23_0.24-2 libjbig-dev_2.1-3.1+b2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libk5crypto3_1.19.2-2+b7 libkeyutils1_1.6.1-3+rpi1 libkpathsea6_2022.20220321.62855-4 libkrb5-3_1.19.2-2+b7 libkrb5support0_1.19.2-2+b7 libksba8_1.6.0-2 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 libldap-2.5-0_2.5.12+dfsg-2 libldap-common_2.5.12+dfsg-2 liblerc-dev_3.0+ds-1 liblerc3_3.0+ds-1 libllvm14_1:14.0.4-4+rpi1 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 liblzo2-2_2.10-2 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-1 libmime-charset-perl_1.012.2-1 libmount-dev_2.38-4 libmount1_2.38-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnghttp2-14_1.47.0-1+b1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.34-1 libnss3_2:3.79-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpango-1.0-0_1.50.7+ds-1 libpango1.0-dev_1.50.7+ds-1 libpangocairo-1.0-0_1.50.7+ds-1 libpangoft2-1.0-0_1.50.7+ds-1 libpangoxft-1.0-0_1.50.7+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-1+b2 libpcre2-32-0_10.40-1+b2 libpcre2-8-0_10.40-1+b2 libpcre2-dev_10.40-1+b2 libpcre2-posix3_10.40-1+b2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libpcsclite1_1.9.8-1 libpdfbox-java_1:1.8.16-2 libperl5.34_5.34.0-4 libpipeline1_1.5.6-1 libpixman-1-0_0.40.0-1 libpixman-1-dev_0.40.0-1 libpng-dev_1.6.37-5 libpng16-16_1.6.37-5 libpsl5_0.21.0-1.2 libptexenc1_2022.20220321.62855-4 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.10.4-1+b1 libpython3.10-minimal_3.10.5-1+b1 libpython3.10-stdlib_3.10.5-1+b1 libreadline-dev_8.1.2-1.2 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-6+b1 libsasl2-modules-db_2.1.28+dfsg-6+b1 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libselinux1-dev_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol-dev_3.4-2 libsepol2_3.4-2 libsigsegv2_2.14-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.38-4 libsombok3_2.4.0-2+b2 libsqlite3-0_3.38.5-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.3-8 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 libsub-override-perl_0.09-3 libsynctex2_2022.20220321.62855-4 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libteckit0_2.5.11+ds1-1 libtexlua53-5_2022.20220321.62855-4 libtexluajit2_2022.20220321.62855-4 libtext-charwidth-perl_0.04-10+b2 libtext-iconv-perl_1.7-7+b2 libtext-unidecode-perl_1.30-1.1 libthai-data_0.1.29-1 libthai-dev_0.1.29-1 libthai0_0.1.29-1 libtiff-dev_4.4.0-2 libtiff5_4.4.0-2 libtiff5-dev_4.4.0-2 libtiffxx5_4.4.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.7-4 libubsan1_12.1.0-2+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunicode-linebreak-perl_0.0.20190101-1+b3 libunistring2_1.0-1 libunwind8_1.3.2-2 libuuid1_2.38-4 libvulkan1_1.3.216.0-1 libwebp7_1.2.2-2 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libx11-dev_2:1.7.5-1 libx11-xcb1_2:1.7.5-1 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-present0_1.14-3 libxcb-render0_1.14-3 libxcb-render0-dev_1.14-3 libxcb-shm0_1.14-3 libxcb-shm0-dev_1.14-3 libxcb-sync1_1.14-3 libxcb-xfixes0_1.14-3 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.4-1 libxext6_2:1.3.4-1 libxfixes3_1:6.0.0-1 libxfont2_1:2.0.5-1 libxft-dev_2.3.4-1 libxft2_2.3.4-1 libxi6_2:1.8-1 libxkbfile1_1:1.1.0-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml2_2.9.14+dfsg-1 libxmu6_2:1.1.3-3 libxmuu1_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrandr2_2:1.5.2-2 libxrender-dev_1:0.9.10-1.1 libxrender1_1:0.9.10-1.1 libxshmfence1_1.3-1 libxss-dev_1:1.2.3-1 libxss1_1:1.2.3-1 libxt-dev_1:1.2.1-1 libxt6_1:1.2.1-1 libxtst6_2:1.2.3-1.1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.1-1 libz3-4_4.8.12-1 libzstd1_1.5.2+dfsg-1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.18.2-1+rpi1 lmodern_2.005-1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4 mpack_1.6-18 nano_6.3-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openjdk-11-jdk_11.0.14.1+1-1 openjdk-11-jdk-headless_11.0.14.1+1-1 openjdk-11-jre_11.0.14.1+1-1 openjdk-11-jre-headless_11.0.14.1+1-1 openssl_3.0.3-8 pango1.0-tools_1.50.7+ds-1 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 pinentry-curses_1.2.0-1 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 preview-latex-style_12.2-1 python3_3.10.4-1+b1 python3-distutils_3.9.12-1 python3-lib2to3_3.9.12-1 python3-minimal_3.10.4-1+b1 python3.10_3.10.5-1+b1 python3.10-minimal_3.10.5-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.03-1 t1utils_1.41-4 tar_1.34+dfsg-1 tcl8.6_8.6.12+dfsg-1 tcl8.6-dev_8.6.12+dfsg-1 tex-common_6.17 texinfo_6.8-4+b1 texlive-base_2022.20220405-2 texlive-binaries_2022.20220321.62855-4 texlive-extra-utils_2022.20220405-3 texlive-fonts-extra_2022.20220405-3 texlive-fonts-recommended_2022.20220405-2 texlive-latex-base_2022.20220405-2 texlive-latex-extra_2022.20220405-3 texlive-latex-recommended_2022.20220405-2 texlive-luatex_2022.20220405-2 texlive-pictures_2022.20220405-2 texlive-plain-generic_2022.20220405-3 tk8.6_8.6.12-1 tk8.6-dev_8.6.12-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-4 util-linux-extra_2.38-4 uuid-dev_2.38-4 x11-common_1:7.7+23 x11-xkb-utils_7.7+7 x11proto-core-dev_2022.1-1 x11proto-dev_2022.1-1 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xfonts-base_1:1.0.5 xfonts-encodings_1:1.0.4-2.1 xfonts-utils_1:7.7+6 xkb-data_2.35.1-1 xorg-sgml-doctools_1:1.11-1.1 xserver-common_2:21.1.3-2 xtrans-dev_1.4.0-1 xvfb_2:21.1.3-2+b2 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4+b2 zlib1g-dev_1:1.2.11.dfsg-4+b2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.6VbBHlg7/trustedkeys.kbx': General error
gpgv: Signature made Thu Jun 23 10:44:11 2022 UTC
gpgv:                using RSA key A1489FE2AB99A21A
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-base_4.2.1-1.dsc
dpkg-source: info: extracting r-base in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-base_4.2.1.orig.tar.gz
dpkg-source: info: unpacking r-base_4.2.1-1.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e97de58b-e55e-4d8d-b0a2-8bb5d3ab9060
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 4.2.1-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash				\
        mkdir_p="/bin/mkdir -p"                         \
MKDIR_P="/bin/mkdir -p"                         \
R_TEXI2DVICMD=emulation				\
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
R_BZIPCMD=/bin/bzip2				\
R_GZIPCMD="/bin/gzip -n"			\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
TAR=/bin/tar					\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
DD=/bin/dd					\
GREP=/bin/grep					\
FGREP="/bin/grep -F"				\
EGREP="/bin/grep -E"				\
SED=/bin/sed					\
GETWD="/bin/pwd"				\
CC=gcc					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2"				\
CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2"				\
FFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"				\
FCFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-long-double       \
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build arm-linux-gnueabihf
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc needs -traditional... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking for C stack direction... down
checking size of long double... 8
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking if need -fno-optimize-sibling-calls for gfortran... yes
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking whether g++  supports C++20 features with -std=gnu++20... yes
checking for g++ -std=gnu++14 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... -ltirpc
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly outside 1902-2037... no
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
configure: searching for an external BLAS
configure: searching for BLAS in default libraries
checking for dgemm_... no
configure: searching for OpenBLAS
checking for sgemm_ in -lopenblas... no
configure: searching for BLIS
checking for sgemm_ in -lblis... no
configure: searching for ATLAS
checking for ATL_xerbla in -latlas... no
configure: searching for PhiPACK
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
configure: searching for IBM ESSL
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
configure: searching for generic BLAS library
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... yes
checking for tirpc/rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.83.1
checking for curl/curl.h... yes
checking if libcurl is version 7 and >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.8.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:            .
  Installation directory:      /usr

  C compiler:                  gcc  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong

  Default C++ compiler:        g++ -std=gnu++14  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++11 compiler:              g++ -std=gnu++11  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++14 compiler:              g++ -std=gnu++14  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++17 compiler:              g++ -std=gnu++17  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++20 compiler:              g++ -std=gnu++20  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran free-form compiler:  gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
  Obj-C compiler:	        

  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(generic), LAPACK(generic), curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling

  Capabilities skipped:        
  Options not enabled:         shared BLAS

  Recommended packages:        no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2"			\
		CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2"			\
		FFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"			\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R_GZIPCMD="/bin/gzip -n"		\
		R
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dposl.f -o dposl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
#@/usr/bin/make install-Linpack
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -lblas -lgfortran -lm   -lreadline  -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n  
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/bin/exec
mkdir -p -- /<<PKGBUILDDIR>>/lib
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/modules
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
Warning message:
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
byte-compiling package 'compiler'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
byte-compiling package 'base'
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
byte-compiling package 'tools'
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
mkdir -p -- ../../../library/utils/R
Warning message:
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mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o
gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
Warning message:
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  path[1]="/sbuild-nonexistent": No such file or directory
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
byte-compiling package 'utils'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
Warning message:
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mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o
gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm 
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
byte-compiling package 'grDevices'
Warning message:
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  path[1]="/sbuild-nonexistent": No such file or directory
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
Warning message:
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  path[1]="/sbuild-nonexistent": No such file or directory
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In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o
gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
byte-compiling package 'graphics'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
mkdir -p -- ../../../library/stats/R
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c loessf.f -o loessf.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c ppr.f -o ppr.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sgram.f -o sgram.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c hclust.f -o hclust.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c kmns.f -o kmns.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c eureka.f -o eureka.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong  -c portsrc.f -o portsrc.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
byte-compiling package 'stats'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
mkdir -p -- ../../../library/methods/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
byte-compiling package 'methods'
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initializing class and method definitions ... done
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
mkdir -p -- ../../../library/grid/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
byte-compiling package 'grid'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
mkdir -p -- ../../../library/splines/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
byte-compiling package 'splines'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
byte-compiling package 'stats4'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
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mkdir -p -- ../../../library/tcltk/exec
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
byte-compiling package 'tcltk'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o
gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
byte-compiling package 'parallel'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
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installing parsed NAMESPACE files
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  path[1]="/sbuild-nonexistent": No such file or directory
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -D_REENTRANT"	\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		R_GZIPCMD="/bin/gzip -n"		\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
Copying source files
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
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R_GZIPCMD="/bin/gzip -n" \
	/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
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#@/usr/bin/make install-Linpack
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gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
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building system startup profile
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building package 'translations'
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building package 'base'
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installing 'sysdata.rda'
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
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building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
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building package 'utils'
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installing 'sysdata.rda'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
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building package 'grDevices'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
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building package 'graphics'
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building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
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building package 'datasets'
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building package 'grid'
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you should 'make docs' now ...
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
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building/updating package metadata ...
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
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/usr/bin/make javaconf
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#@/usr/bin/make install-Linpack
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gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
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building system startup profile
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building package 'translations'
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installing 'sysdata.rda'
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
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  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
installing parsed NAMESPACE files
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version     : 11.0.14.1
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: 
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/sbuild-nonexistent": No such file or directory
make[3]: Entering directory '/tmp/Rjavareconf.JASi99'
gcc -I"/<<PKGBUILDDIR>>/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux     -fpic  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c conftest.c -o conftest.o
gcc -shared -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/<<PKGBUILDDIR>>/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.JASi99'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /<<PKGBUILDDIR>>
Done.

make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
touch make-arch-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/<<PKGBUILDDIR>>/debian/r-base-core
/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
installing doc ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
installing doc/html ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
installing doc/manual ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
installing share ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tzone'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tzone'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
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	/usr/bin/make	CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
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		FFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -D_REENTRANT"	\
		CC=gcc				\
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This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex)
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
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1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
[126] [127] [128] [129] [130]
Underfull \hbox (badness 4479) in paragraph at lines 8393--8404
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[131] [132] [133] [134] [135] [136] [137]
Underfull \hbox (badness 1629) in paragraph at lines 8845--8857
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 8845--8857
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]
Underfull \hbox (badness 1178) in paragraph at lines 9596--9600
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]
Underfull \hbox (badness 2744) in paragraph at lines 11903--11905
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195]
[196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207]
[208] [209] [210] [211] [212] [213] [214] [215]
Underfull \hbox (badness 2253) in paragraph at lines 14099--14101
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[216] [217]
Underfull \hbox (badness 1565) in paragraph at lines 14175--14179
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

Underfull \hbox (badness 4927) in paragraph at lines 14219--14221
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[218] [219]
Underfull \hbox (badness 3148) in paragraph at lines 14321--14326
[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
[220]
Underfull \hbox (badness 1466) in paragraph at lines 14368--14371
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[221] [222]
Underfull \hbox (badness 10000) in paragraph at lines 14499--14503
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14510--14513
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[223] [224] [225] [226]
Underfull \hbox (badness 3965) in paragraph at lines 14807--14811
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238]
[239]
Underfull \hbox (badness 4429) in paragraph at lines 15588--15591
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[240]
Underfull \hbox (badness 10000) in paragraph at lines 15694--15696
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[241]
Underfull \hbox (badness 2035) in paragraph at lines 15767--15771
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[242] [243] [244] [245] [246] [247] [248] [249] [250] [251]
Underfull \hbox (badness 2452) in paragraph at lines 16379--16383
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 16379--16383
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[252] [253] [254]
Underfull \hbox (badness 1092) in paragraph at lines 16552--16557
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[255] [256] [257]
Underfull \hbox (badness 6741) in paragraph at lines 16805--16809
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268]
Underfull \vbox (badness 10000) has occurred while \output is active [269]
Underfull \vbox (badness 10000) has occurred while \output is active [270]
[271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \hbox (badness 1478) in paragraph at lines 18257--18260
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[280] [281] [282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 18529--18531
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 18535--18544
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[284] [285] [286] [287] [288] [289] [290] [291] [292] [293]
Underfull \hbox (badness 1442) in paragraph at lines 19143--19145
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[294] [295] [296] [297] [298]
Underfull \hbox (badness 10000) in paragraph at lines 19474--19480

[299] [300] [301] [302]
Underfull \hbox (badness 1248) in paragraph at lines 19719--19722
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[303] [304] [305] [306]
Underfull \hbox (badness 4739) in paragraph at lines 19982--19984
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[307] [308] [309] [310]
Underfull \hbox (badness 1603) in paragraph at lines 20209--20212
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322]
[323]
Underfull \hbox (badness 2469) in paragraph at lines 21066--21071
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[324] [325]
Underfull \hbox (badness 1675) in paragraph at lines 21154--21163
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21164--21179
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21214--21217
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21214--21217
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[326] [327]
Underfull \hbox (badness 1014) in paragraph at lines 21348--21353
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
[340]
Underfull \hbox (badness 1264) in paragraph at lines 22197--22205
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[341]
Underfull \hbox (badness 4441) in paragraph at lines 22231--22234
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353]
Underfull \hbox (badness 5231) in paragraph at lines 23028--23030
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
[366] [367] [368] [369] [370]
Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[371] [372] [373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 2790) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[379] [380] [381] [382] [383]
Underfull \hbox (badness 1194) in paragraph at lines 24941--24944
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[384] [385] [386]
Underfull \hbox (badness 2368) in paragraph at lines 25148--25154
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 10000) in paragraph at lines 25538--25541
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 10000) in paragraph at lines 26159--26161
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1881) in paragraph at lines 27054--27057
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27078--27080
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[416] [417]
Underfull \hbox (badness 2142) in paragraph at lines 27219--27223
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 27276--27281
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[418] [419] [420] [421]
Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 27583--27586
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 27609--27611
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27651--27656
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 27669--27672
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[423] [424] [425] [426] [427]
Underfull \vbox (badness 3803) has occurred while \output is active [428]
Underfull \hbox (badness 10000) in paragraph at lines 28069--28073
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[429] [430]
Underfull \hbox (badness 10000) in paragraph at lines 28216--28219
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[431]
Underfull \hbox (badness 7925) in paragraph at lines 28297--28301
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 28297--28301
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 28302--28311
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443]
[444] [445] [446] [447]
Underfull \hbox (badness 2726) in paragraph at lines 29298--29301
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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Underfull \hbox (badness 1603) in paragraph at lines 30048--30051
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
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Underfull \hbox (badness 1533) in paragraph at lines 31085--31088
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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Underfull \hbox (badness 1163) in paragraph at lines 31248--31259
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
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[502] [503]
Underfull \hbox (badness 10000) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 32932--32934
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 32935--32939
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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[507] [508] [509] [510] [511] [512] [513]
Underfull \hbox (badness 1655) in paragraph at lines 33529--33531
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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Underfull \hbox (badness 2261) in paragraph at lines 34735--34740
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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Underfull \hbox (badness 10000) in paragraph at lines 35855--35866
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
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[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 37386--37388
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[574]
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Underfull \hbox (badness 2913) in paragraph at lines 37806--37810
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[581] [582] [583]
Underfull \hbox (badness 1072) in paragraph at lines 38052--38056
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 38057--38061
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[584]
Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 38112--38119
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[585] [586] [587]
Underfull \hbox (badness 2644) in paragraph at lines 38347--38351
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

[588] [589] [590]
Underfull \hbox (badness 1142) in paragraph at lines 38500--38506
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602]
[603] [604] [605] [606] [607] [608] [609] [610] [611]
Underfull \hbox (badness 1158) in paragraph at lines 39801--39803
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[612] [613] [614] [615] [616] [617] [618] [619] [620]
Underfull \hbox (badness 1137) in paragraph at lines 40391--40397
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[621]
Underfull \hbox (badness 4967) in paragraph at lines 40410--40415
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[622] [623]
Underfull \hbox (badness 1616) in paragraph at lines 40530--40535
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[624] [625] [626] [627] [628] [629] [630] [631]
Underfull \hbox (badness 1472) in paragraph at lines 41077--41080
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
[632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643]
[644] [645] [646]
Underfull \hbox (badness 10000) in paragraph at lines 42003--42007
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[647] [648] [649] [650]
Underfull \hbox (badness 10000) in paragraph at lines 42254--42257
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[651] [652] [653]
Underfull \hbox (badness 10000) in paragraph at lines 42438--42442
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[654] [655] [656] [657] [658] [659] [660] [661] [662]
Underfull \hbox (badness 10000) in paragraph at lines 43064--43067
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
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[669] [670] [671] [672] [673] [674] [675]
Underfull \hbox (badness 1990) in paragraph at lines 43986--43994
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 43986--43994
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
[688] [689] [690]
Underfull \hbox (badness 2452) in paragraph at lines 44955--44961
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[691] [692] [693] [694] [695] [696]
Underfull \hbox (badness 3668) in paragraph at lines 45353--45355
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[697] [698]
Underfull \hbox (badness 2401) in paragraph at lines 45483--45487
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[699] [700] [701]
Underfull \hbox (badness 2111) in paragraph at lines 45691--45696
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 
is not empty, these are used as col-umn names.
[702] [703] [704] [705]
Underfull \hbox (badness 4001) in paragraph at lines 45937--45939
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .

[706] [707] [708] [709] [710] [711]
Underfull \hbox (badness 5417) in paragraph at lines 46302--46306
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[712]
Underfull \hbox (badness 10000) in paragraph at lines 46363--46367
[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[713]) (./compiler-pkg.tex [714]
Chapter 2.
[715] [716] [717] [718]) (./datasets-pkg.tex
Chapter 3.
[719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730]
[731] [732] [733] [734] [735]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747]
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771]
[772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783]
[784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795]
[796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802]
Chapter 4.
[803] [804] [805] [806] [807]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be 
spec-i-fied as
[818] [819] [820] [821]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[822] [823]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[824] [825] [826] [827] [828]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and


Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[829] [830] [831] [832] [833] [834] [835]
Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
 ,
[836]
Underfull \hbox (badness 10000) in paragraph at lines 2150--2152
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[837] [838] [839]
Underfull \hbox (badness 6758) in paragraph at lines 2329--2332
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[840] [841] [842] [843] [844] [845] [846] [847] [848] [849]
Underfull \hbox (badness 10000) in paragraph at lines 2940--2941

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Underfull \hbox (badness 10000) in paragraph at lines 4016--4019
[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
[867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878]
Underfull \vbox (badness 3803) has occurred while \output is active [879]
[880]
Underfull \hbox (badness 1584) in paragraph at lines 4907--4909
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 4911--4918
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[881] [882] [883] [884]
Underfull \hbox (badness 1377) in paragraph at lines 5217--5222
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[885]
Underfull \hbox (badness 1418) in paragraph at lines 5293--5300
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[886]
Underfull \hbox (badness 1755) in paragraph at lines 5311--5313
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[887]
Underfull \hbox (badness 1377) in paragraph at lines 5422--5427
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[888]
Underfull \hbox (badness 7344) in paragraph at lines 5491--5493
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[889]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[891] [892]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex
Chapter 5.
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[941] [942] [943] [944]
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1012 </<<PKGBUILDDIR>>/library/graphics/help/figures//mai.pdf
>]
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[][] 
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
[1073]
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(./grid-pkg.tex [1078]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
 []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1173] [1174]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185]
[1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196]
[1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206])
(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string 
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1259]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
[1260]
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1309] [1310] [1311]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374]
[1375] [1376] [1377] [1378] [1379] [1380]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1381] [1382] [1383]) (./splines-pkg.tex [1384]
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395]
[1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex
Chapter 10.
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[1412] [1413] [1414]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433]
[1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444]
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[1456]
Underfull \hbox (badness 2503) in paragraph at lines 3530--3533
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467]
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476]
Underfull \hbox (badness 3989) in paragraph at lines 4787--4794
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2556) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
[1487] [1488] [1489] [1490] [1491] [1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 5838--5842
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506]
Underfull \hbox (badness 7081) in paragraph at lines 6632--6635
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method

Underfull \hbox (badness 10000) in paragraph at lines 6636--6638
[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[1518] [1519]
Underfull \hbox (badness 10000) in paragraph at lines 7493--7496
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
[1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
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[1543] [1544] [1545] [1546]
Underfull \hbox (badness 2626) in paragraph at lines 9172--9175
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1547] [1548]
Underfull \hbox (badness 2503) in paragraph at lines 9279--9283
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559]
[1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569]
Underfull \hbox (badness 4518) in paragraph at lines 10631--10636
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1570] [1571] [1572] [1573] [1574]
Underfull \hbox (badness 2142) in paragraph at lines 10992--10995
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11011--11014
[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
 [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each 
IWLS it-er-a-tion. Hence,
[1575]
Underfull \hbox (badness 1708) in paragraph at lines 11073--11077
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1576] [1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1694) in paragraph at lines 11469--11472
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11950 \aliasA{hat}{influence.measures}{hat}
                                              [1590] [1591]
Underfull \hbox (badness 1484) in paragraph at lines 12092--12094
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 10000) in paragraph at lines 12694--12696
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
[1602] [1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 2894) in paragraph at lines 13030--13034
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1608] [1609] [1610] [1611] [1612] [1613]
Underfull \hbox (badness 1496) in paragraph at lines 13444--13450
dom-iza-tion Dis-tri-bu-tions of
[1614] [1615] [1616] [1617] [1618] [1619] [1620]
Underfull \hbox (badness 4518) in paragraph at lines 13842--13847
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630]
Underfull \hbox (badness 4518) in paragraph at lines 14503--14508
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1631] [1632]
Underfull \hbox (badness 6412) in paragraph at lines 14641--14645
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14648--14650
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
[1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643]
[1644] [1645] [1646] [1647] [1648] [1649] [1650]
Underfull \hbox (badness 2503) in paragraph at lines 15724--15728
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1651] [1652]
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[1654] [1655] [1656] [1657] [1658] [1659]
Underfull \hbox (badness 10000) in paragraph at lines 16237--16243
[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16237--16243
[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
[1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670]
[1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
[1682] [1683] [1684] [1685]
Underfull \hbox (badness 1158) in paragraph at lines 17888--17891
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1686] [1687]
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Underfull \vbox (badness 10000) has occurred while \output is active [1689]
Underfull \vbox (badness 10000) has occurred while \output is active [1690]
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[1702] [1703]
Underfull \hbox (badness 1377) in paragraph at lines 18915--18920
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18920--18923
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 18933--18937
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18933--18937
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + 
reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18941--18945
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1704] [1705] [1706]
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Overfull \hbox (15.73795pt too wide) in paragraph at lines 19166--19166
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19169--19169
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1708] [1709] [1710] [1711] [1712] [1713] [1714]
Underfull \hbox (badness 1337) in paragraph at lines 19628--19631
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 20099--20105
\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
 cook.lty, col = cook.col, text.col
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 1194) in paragraph at lines 20429--20432
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1729] [1730] [1731] [1732] [1733] [1734]
Underfull \hbox (badness 2503) in paragraph at lines 20808--20811
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1735]
Underfull \hbox (badness 3919) in paragraph at lines 20835--20837
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746]
[1747] [1748] [1749] [1750] [1751] [1752] [1753]
Underfull \hbox (badness 10000) in paragraph at lines 21913--21919
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764]
[1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775]
[1776]
Underfull \hbox (badness 1337) in paragraph at lines 23270--23276
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 1436) in paragraph at lines 23695--23698
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 23836--23837
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795]
[1796] [1797] [1798] [1799] [1800]
Underfull \hbox (badness 1824) in paragraph at lines 24808--24814
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 24808--24814
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1801]
Underfull \hbox (badness 10000) in paragraph at lines 24829--24832
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1802]
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[1804] [1805] [1806] [1807] [1808] [1809] [1810]
Underfull \hbox (badness 2165) in paragraph at lines 25410--25415
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1811] [1812] [1813] [1814]
Underfull \hbox (badness 1867) in paragraph at lines 25619--25621
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 25634--25638
[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1815] [1816] [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825]
[1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836]
[1837] [1838] [1839]
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[1841]
Underfull \hbox (badness 3514) in paragraph at lines 27282--27287
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1842] [1843] [1844] [1845]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27552--27558
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1846]
Overfull \hbox (20.23795pt too wide) in paragraph at lines 27609--27609
 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 

Overfull \hbox (11.22874pt too wide) in paragraph at lines 27611--27611
 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1847] [1848] [1849]
Underfull \hbox (badness 3514) in paragraph at lines 27785--27790
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1850] [1851]
Underfull \hbox (badness 3514) in paragraph at lines 27872--27877
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852]
Underfull \hbox (badness 3514) in paragraph at lines 27937--27942
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1853] [1854]
Underfull \hbox (badness 3514) in paragraph at lines 28031--28036
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
Underfull \hbox (badness 6691) in paragraph at lines 28123--28128
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864]
Underfull \hbox (badness 4024) in paragraph at lines 28614--28617
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29220--29222
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1875] [1876] [1877]
Underfull \hbox (badness 5431) in paragraph at lines 29430--29433
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1878] [1879] [1880] [1881] [1882] [1883]
Underfull \hbox (badness 1337) in paragraph at lines 29745--29749
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1884] [1885] [1886] [1887] [1888]
Underfull \hbox (badness 1616) in paragraph at lines 30057--30060
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
 []\T1/zi4/m/n/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1923] [1924] [1925]
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1926] [1927] [1928]
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 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934]
Chapter 11.
[1935] [1936] [1937]
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h.methods}) has been already used, duplicate ignored
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                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1943] [1944] [1945])
(./tcltk-pkg.tex [1946]
Chapter 12.
[1947] [1948] [1949] [1950] [1951] [1952] [1953]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1956] [1957] [1958] [1959] [1960]
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[1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex
Chapter 13.
[1969]

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[1970]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
 be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1975]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[1987]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1988]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1989] [1990] [1991] [1992] [1993]
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[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of

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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1994] [1995]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1996] [1997] [1998] [1999]
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                   \relax 
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
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MD}) has been already used, duplicate ignored
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l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
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[2003] [2004]
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 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string
[2008] [2009] [2010] [2011] [2012] [2013] [2014]

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[2015] [2016] [2017] [2018] [2019]
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[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2033] [2034]
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[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[2035] [2036] [2037] [2038] [2039]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
[2040]
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to

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[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
 from

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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[2041] [2042] [2043] [2044] [2045]
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050]
Chapter 14.
[2051]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2062] [2063] [2064]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-

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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

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\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.

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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by

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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2076]

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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2087] [2088] [2089] [2090] [2091] [2092]
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l.2710 ... the Clipboard in MS Windows}{clipboard}
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2113]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2114] [2115] [2116]
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2128]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
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l.5044 ...mat Unordered and Ordered Lists}{format}
                                                  
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2138] [2139] [2140] [2141] [2142] [2143]
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151]

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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2152]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2153] [2154] [2155]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2156]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2157] [2158]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2159] [2160] [2161]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2162]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2163]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

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[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2164]
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2165]
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[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176]
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
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[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
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onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


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[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
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[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
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\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
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[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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No file fullrefman.ind.
(./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
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 )
(see the transcript file for additional information)
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[125]
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
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[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
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[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
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\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
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[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[271] [272] [273] [274] [275] [276] [277] [278] [279]
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[280] [281] [282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 18529--18531
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 18535--18544
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[284] [285] [286] [287] [288] [289] [290] [291] [292] [293]
Underfull \hbox (badness 1442) in paragraph at lines 19143--19145
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[294] [295] [296] [297] [298]
Underfull \hbox (badness 10000) in paragraph at lines 19474--19480

[299] [300] [301] [302]
Underfull \hbox (badness 1248) in paragraph at lines 19719--19722
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[303] [304] [305] [306]
Underfull \hbox (badness 4739) in paragraph at lines 19982--19984
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[307] [308] [309] [310]
Underfull \hbox (badness 1603) in paragraph at lines 20209--20212
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322]
[323]
Underfull \hbox (badness 2469) in paragraph at lines 21066--21071
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[324] [325]
Underfull \hbox (badness 1675) in paragraph at lines 21154--21163
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21164--21179
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21214--21217
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21214--21217
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[326] [327]
Underfull \hbox (badness 1014) in paragraph at lines 21348--21353
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
[340]
Underfull \hbox (badness 1264) in paragraph at lines 22197--22205
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[341]
Underfull \hbox (badness 4441) in paragraph at lines 22231--22234
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353]
Underfull \hbox (badness 5231) in paragraph at lines 23028--23030
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
[366] [367] [368] [369] [370]
Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[371] [372] [373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 2790) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[379] [380] [381] [382] [383]
Underfull \hbox (badness 1194) in paragraph at lines 24941--24944
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[384] [385] [386]
Underfull \hbox (badness 2368) in paragraph at lines 25148--25154
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 10000) in paragraph at lines 25538--25541
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 10000) in paragraph at lines 26159--26161
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1881) in paragraph at lines 27054--27057
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27078--27080
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[416] [417]
Underfull \hbox (badness 2142) in paragraph at lines 27219--27223
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 27276--27281
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[418] [419] [420] [421]
Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 27583--27586
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 27609--27611
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27651--27656
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 27669--27672
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[423] [424] [425] [426] [427]
Underfull \vbox (badness 3803) has occurred while \output is active [428]
Underfull \hbox (badness 10000) in paragraph at lines 28069--28073
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[429] [430]
Underfull \hbox (badness 10000) in paragraph at lines 28216--28219
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[431]
Underfull \hbox (badness 7925) in paragraph at lines 28297--28301
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 28297--28301
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 28302--28311
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443]
[444] [445] [446] [447]
Underfull \hbox (badness 2726) in paragraph at lines 29298--29301
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459]
Underfull \hbox (badness 1603) in paragraph at lines 30048--30051
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
[472] [473] [474]
Underfull \hbox (badness 1533) in paragraph at lines 31085--31088
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[475] [476] [477]
Underfull \hbox (badness 1163) in paragraph at lines 31248--31259
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503]
Underfull \hbox (badness 10000) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 32932--32934
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 32935--32939
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[504] [505]
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[507] [508] [509] [510] [511] [512] [513]
Underfull \hbox (badness 1655) in paragraph at lines 33529--33531
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525]
[526] [527] [528] [529] [530] [531] [532]
Underfull \hbox (badness 2261) in paragraph at lines 34735--34740
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544]
[545] [546] [547] [548] [549]
Underfull \hbox (badness 10000) in paragraph at lines 35855--35866
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561]
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 37386--37388
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[574]
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[576] [577] [578] [579] [580]
Underfull \hbox (badness 2913) in paragraph at lines 37806--37810
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[581] [582] [583]
Underfull \hbox (badness 1072) in paragraph at lines 38052--38056
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 38057--38061
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[584]
Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 38112--38119
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[585] [586] [587]
Underfull \hbox (badness 2644) in paragraph at lines 38347--38351
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

[588] [589] [590]
Underfull \hbox (badness 1142) in paragraph at lines 38500--38506
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602]
[603] [604] [605] [606] [607] [608] [609] [610] [611]
Underfull \hbox (badness 1158) in paragraph at lines 39801--39803
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[612] [613] [614] [615] [616] [617] [618] [619] [620]
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[621]
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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[622] [623]
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
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[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
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[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
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[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[699] [700] [701]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 
is not empty, these are used as col-umn names.
[702] [703] [704] [705]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .

[706] [707] [708] [709] [710] [711]
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[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[712]
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[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[713]) (./compiler-pkg.tex [714]
Chapter 2.
[715] [716] [717] [718]) (./datasets-pkg.tex
Chapter 3.
[719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730]
[731] [732] [733] [734] [735]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747]
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771]
[772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783]
[784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795]
[796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802]
Chapter 4.
[803] [804] [805] [806] [807]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in

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\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
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[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be 
spec-i-fied as
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[822] [823]
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[824] [825] [826] [827] [828]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and


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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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Underfull \hbox (badness 1325) in paragraph at lines 2038--2048
[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
 ,
[836]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[837] [838] [839]
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
[867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878]
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[880]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[881] [882] [883] [884]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[885]
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
[886]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[887]
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[888]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[889]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[891] [892]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[893] [894]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
[895] [896] [897] [898] [899] [900] [901] [902]
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[917]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[918] [919] [920] [921] [922]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex
Chapter 5.
[929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940]
[941] [942] [943] [944]
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
[945] [946] [947] [948] [949] [950]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
[951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962]
[963] [964] [965] [966] [967]
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[1005] [1006] [1007] [1008] [1009]
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1012 </<<PKGBUILDDIR>>/library/graphics/help/figures//mai.pdf
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
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(./grid-pkg.tex [1078]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
 []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
[1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109]
[1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120]
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[1141] [1142] [1143] [1144] [1145]
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Underfull \hbox (badness 1067) in paragraph at lines 4761--4764
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1160] [1161] [1162] [1163] [1164] [1165]
Underfull \hbox (badness 7256) in paragraph at lines 5112--5114
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1173] [1174]
Underfull \hbox (badness 4699) in paragraph at lines 5632--5637
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185]
[1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196]
[1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206])
(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string 
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1259]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
[1260]
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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Underfull \hbox (badness 4036) in paragraph at lines 5445--5448
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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Underfull \hbox (badness 1087) in paragraph at lines 5752--5757
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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Underfull \hbox (badness 1675) in paragraph at lines 6459--6465
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1308]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1309] [1310] [1311]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
[1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322]
[1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333]
[1334] [1335] [1336] [1337] [1338]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374]
[1375] [1376] [1377] [1378] [1379] [1380]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1381] [1382] [1383]) (./splines-pkg.tex [1384]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395]
[1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex
Chapter 10.
[1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411]
[1412] [1413] [1414]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433]
[1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444]
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[1456]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1505] [1506]
Underfull \hbox (badness 7081) in paragraph at lines 6632--6635
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method

Underfull \hbox (badness 10000) in paragraph at lines 6636--6638
[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7493--7496
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1547] [1548]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1570] [1571] [1572] [1573] [1574]
Underfull \hbox (badness 2142) in paragraph at lines 10992--10995
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

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[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
 [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each 
IWLS it-er-a-tion. Hence,
[1575]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1576] [1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1694) in paragraph at lines 11469--11472
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
[1602] [1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 2894) in paragraph at lines 13030--13034
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1608] [1609] [1610] [1611] [1612] [1613]
Underfull \hbox (badness 1496) in paragraph at lines 13444--13450
dom-iza-tion Dis-tri-bu-tions of
[1614] [1615] [1616] [1617] [1618] [1619] [1620]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1631] [1632]
Underfull \hbox (badness 6412) in paragraph at lines 14641--14645
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14648--14650
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
[1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16237--16243
[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
[1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670]
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + 
reltol) []\T1/ptm/m/n/10 at a step. De-faults to

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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
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 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

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 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1708] [1709] [1710] [1711] [1712] [1713] [1714]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
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\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
 cook.lty, col = cook.col, text.col
[1724] [1725] [1726] [1727] [1728]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1729] [1730] [1731] [1732] [1733] [1734]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1735]
Underfull \hbox (badness 3919) in paragraph at lines 20835--20837
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746]
[1747] [1748] [1749] [1750] [1751] [1752] [1753]
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764]
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[1776]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 1436) in paragraph at lines 23695--23698
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 23836--23837
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795]
[1796] [1797] [1798] [1799] [1800]
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 24808--24814
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1801]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1802]
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1811] [1812] [1813] [1814]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

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[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
[1815] [1816] [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825]
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[1841]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1842] [1843] [1844] [1845]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1846]
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 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 

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 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1847] [1848] [1849]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1853] [1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864]
Underfull \hbox (badness 4024) in paragraph at lines 28614--28617
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29220--29222
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1875] [1876] [1877]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1878] [1879] [1880] [1881] [1882] [1883]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1884] [1885] [1886] [1887] [1888]
Underfull \hbox (badness 1616) in paragraph at lines 30057--30060
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899]
[1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907]
Underfull \hbox (badness 3557) in paragraph at lines 31192--31196
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
 []\T1/zi4/m/n/10 interval =
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[1912] [1913]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922]
Underfull \hbox (badness 1337) in paragraph at lines 32085--32089
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1923] [1924] [1925]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32292--32292
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1926] [1927] [1928]
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 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934]
Chapter 11.
[1935] [1936] [1937]
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[1940] [1941] [1942]
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h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1943] [1944] [1945])
(./tcltk-pkg.tex [1946]
Chapter 12.
[1947] [1948] [1949] [1950] [1951] [1952] [1953]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1956] [1957] [1958] [1959] [1960]
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[1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex
Chapter 13.
[1969]

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[1970]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
 be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1971] [1972]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
[1973] [1974]
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[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1975]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
[1987]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1988]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1989] [1990] [1991] [1992] [1993]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of

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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1994] [1995]
Underfull \hbox (badness 4096) in paragraph at lines 1714--1722
\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1996] [1997] [1998] [1999]
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<to be read again> 
                   \relax 
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
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MD}) has been already used, duplicate ignored
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                   \relax 
l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [2000] [2001] [2002]
[2003] [2004]
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 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[2005] [2006] [2007]
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\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string
[2008] [2009] [2010] [2011] [2012] [2013] [2014]

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Underfull \hbox (badness 1424) in paragraph at lines 3195--3197
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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Underfull \hbox (badness 10000) in paragraph at lines 3897--3899
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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Underfull \hbox (badness 10000) in paragraph at lines 4036--4039
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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Underfull \hbox (badness 1137) in paragraph at lines 4138--4140
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
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Underfull \hbox (badness 1796) in paragraph at lines 4446--4451
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
[2040]
Underfull \hbox (badness 4699) in paragraph at lines 4496--4500
[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to

Underfull \hbox (badness 1946) in paragraph at lines 4496--4500
[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
 from

Underfull \hbox (badness 1838) in paragraph at lines 4524--4530
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4524--4530
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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Underfull \hbox (badness 2197) in paragraph at lines 4799--4809
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

Underfull \hbox (badness 1571) in paragraph at lines 4865--4869
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050]
Chapter 14.
[2051]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
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Underfull \hbox (badness 10000) in paragraph at lines 726--732
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 726--732
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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Underfull \hbox (badness 3861) in paragraph at lines 931--936
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 3323) in paragraph at lines 1115--1123
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-

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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 2875) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.

Underfull \hbox (badness 1817) in paragraph at lines 1115--1123
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by

Underfull \hbox (badness 10000) in paragraph at lines 1127--1129
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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Underfull \hbox (badness 1371) in paragraph at lines 1637--1639
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2076]

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Underfull \hbox (badness 2057) in paragraph at lines 2358--2360
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2710 ... the Clipboard in MS Windows}{clipboard}
                                                   [2093] [2094] [2095]
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Underfull \hbox (badness 6842) in paragraph at lines 4007--4012
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2113]
Underfull \hbox (badness 1430) in paragraph at lines 4070--4078
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2114] [2115] [2116]
Underfull \hbox (badness 10000) in paragraph at lines 4275--4277
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2128]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5044 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5044 ...mat Unordered and Ordered Lists}{format}
                                                   [2129] [2130] [2131]
[2132] [2133] [2134] [2135] [2136] [2137]
Underfull \hbox (badness 1622) in paragraph at lines 5567--5571
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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Underfull \hbox (badness 1448) in paragraph at lines 5946--5951
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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Underfull \hbox (badness 1371) in paragraph at lines 6496--6498
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2152]
Underfull \hbox (badness 1502) in paragraph at lines 6585--6590
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6585--6590
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2153] [2154] [2155]
Underfull \hbox (badness 10000) in paragraph at lines 6758--6767
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2156]
Underfull \hbox (badness 2150) in paragraph at lines 6822--6825
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2157] [2158]
Underfull \hbox (badness 3118) in paragraph at lines 6961--6963
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2159] [2160] [2161]
Underfull \hbox (badness 1325) in paragraph at lines 7140--7144
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2162]
Underfull \hbox (badness 1424) in paragraph at lines 7232--7235
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2163]
Underfull \hbox (badness 3219) in paragraph at lines 7303--7310
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7303--7310
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7303--7310
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7303--7310
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7311--7314
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2164]
Underfull \hbox (badness 1024) in paragraph at lines 7438--7441
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
[2165]
Underfull \hbox (badness 10000) in paragraph at lines 7471--7476
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176]
[2177]
Underfull \hbox (badness 10000) in paragraph at lines 8175--8177
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188]
[2189]
Underfull \hbox (badness 2310) in paragraph at lines 8935--8940
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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Underfull \hbox (badness 1248) in paragraph at lines 9461--9465
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2198]
Underfull \hbox (badness 1789) in paragraph at lines 9541--9543
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[2210] [2211]
Underfull \hbox (badness 1097) in paragraph at lines 10378--10381
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2212] [2213]
Underfull \hbox (badness 3000) in paragraph at lines 10514--10519
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;
[2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222]
Underfull \hbox (badness 2134) in paragraph at lines 11103--11108
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2223]
Underfull \hbox (badness 10000) in paragraph at lines 11159--11164
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11159--11164
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
[2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231]
Underfull \hbox (badness 2469) in paragraph at lines 11653--11657
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11653--11657
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2232] [2233] [2234] [2235] [2236] [2237]
Underfull \hbox (badness 4060) in paragraph at lines 12077--12080
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12100--12100
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2238] [2239] [2240] [2241]
Underfull \hbox (badness 2150) in paragraph at lines 12355--12357
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
[2242] [2243] [2244] [2245]
Underfull \hbox (badness 10000) in paragraph at lines 12575--12579
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12608--12614
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2246]
Underfull \hbox (badness 2762) in paragraph at lines 12623--12631
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
[2247] [2248]
Underfull \hbox (badness 1009) in paragraph at lines 12802--12814
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12842--12844
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
[2249]
Underfull \hbox (badness 1077) in paragraph at lines 12872--12879
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2250] [2251] [2252] [2253] [2254] [2255] [2256]
Underfull \hbox (badness 3780) in paragraph at lines 13280--13284
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 13296--13299
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
[2257] [2258] [2259]
Underfull \hbox (badness 2302) in paragraph at lines 13501--13503
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2260] [2261] [2262] [2263] [2264]
Underfull \hbox (badness 10000) in paragraph at lines 13800--13805
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not 
have

Underfull \hbox (badness 5970) in paragraph at lines 13809--13812
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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Underfull \hbox (badness 2932) in paragraph at lines 14242--14249
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

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Underfull \hbox (badness 10000) in paragraph at lines 1578--1584

[26] [27] [28] [29] [30] [31] [32]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2056--2056
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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Underfull \hbox (badness 1721) in paragraph at lines 2720--2724
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 3901--3903
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[77] [78] [79] [80] [81]
Underfull \hbox (badness 2521) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[97] [98] [99] [100]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6387--6387
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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Underfull \hbox (badness 1303) in paragraph at lines 7281--7288
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
[113]
Underfull \hbox (badness 2111) in paragraph at lines 7292--7297
[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
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Underfull \hbox (badness 2096) in paragraph at lines 7962--7966
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[125]
Underfull \hbox (badness 2351) in paragraph at lines 8076--8079
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4479) in paragraph at lines 8393--8404
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[131] [132] [133] [134] [135] [136] [137]
Underfull \hbox (badness 1629) in paragraph at lines 8845--8857
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 8845--8857
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]
Underfull \hbox (badness 1178) in paragraph at lines 9596--9600
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]
Underfull \hbox (badness 2744) in paragraph at lines 11903--11905
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195]
[196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207]
[208] [209] [210] [211] [212] [213] [214] [215]
Underfull \hbox (badness 2253) in paragraph at lines 14099--14101
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[216] [217]
Underfull \hbox (badness 1565) in paragraph at lines 14175--14179
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

Underfull \hbox (badness 4927) in paragraph at lines 14219--14221
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[218] [219]
Underfull \hbox (badness 3148) in paragraph at lines 14321--14326
[][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi
les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [
][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file.
show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co
n-sider
[220]
Underfull \hbox (badness 1466) in paragraph at lines 14368--14371
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[221] [222]
Underfull \hbox (badness 10000) in paragraph at lines 14499--14503
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14510--14513
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[223] [224] [225] [226]
Underfull \hbox (badness 3965) in paragraph at lines 14807--14811
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238]
[239]
Underfull \hbox (badness 4429) in paragraph at lines 15588--15591
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[240]
Underfull \hbox (badness 10000) in paragraph at lines 15694--15696
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[241]
Underfull \hbox (badness 2035) in paragraph at lines 15767--15771
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[242] [243] [244] [245] [246] [247] [248] [249] [250] [251]
Underfull \hbox (badness 2452) in paragraph at lines 16379--16383
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 16379--16383
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[252] [253] [254]
Underfull \hbox (badness 1092) in paragraph at lines 16552--16557
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[255] [256] [257]
Underfull \hbox (badness 6741) in paragraph at lines 16805--16809
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268]
Underfull \vbox (badness 10000) has occurred while \output is active [269]
Underfull \vbox (badness 10000) has occurred while \output is active [270]
[271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \hbox (badness 1478) in paragraph at lines 18257--18260
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[280] [281] [282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 18529--18531
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 18535--18544
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[284] [285] [286] [287] [288] [289] [290] [291] [292] [293]
Underfull \hbox (badness 1442) in paragraph at lines 19143--19145
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[294] [295] [296] [297] [298]
Underfull \hbox (badness 10000) in paragraph at lines 19474--19480

[299] [300] [301] [302]
Underfull \hbox (badness 1248) in paragraph at lines 19719--19722
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[303] [304] [305] [306]
Underfull \hbox (badness 4739) in paragraph at lines 19982--19984
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[307] [308] [309] [310]
Underfull \hbox (badness 1603) in paragraph at lines 20209--20212
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322]
[323]
Underfull \hbox (badness 2469) in paragraph at lines 21066--21071
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 1675) in paragraph at lines 21154--21163
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21164--21179
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21214--21217
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21214--21217
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
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Underfull \hbox (badness 1014) in paragraph at lines 21348--21353
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
[340]
Underfull \hbox (badness 1264) in paragraph at lines 22197--22205
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[341]
Underfull \hbox (badness 4441) in paragraph at lines 22231--22234
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353]
Underfull \hbox (badness 5231) in paragraph at lines 23028--23030
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
[366] [367] [368] [369] [370]
Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24121--24127
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[371] [372] [373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 2790) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 24618--24621
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[379] [380] [381] [382] [383]
Underfull \hbox (badness 1194) in paragraph at lines 24941--24944
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[384] [385] [386]
Underfull \hbox (badness 2368) in paragraph at lines 25148--25154
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 10000) in paragraph at lines 25538--25541
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 10000) in paragraph at lines 26159--26161
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1881) in paragraph at lines 27054--27057
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27078--27080
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[416] [417]
Underfull \hbox (badness 2142) in paragraph at lines 27219--27223
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 27276--27281
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[418] [419] [420] [421]
Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 27570--27576
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 27583--27586
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 27609--27611
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27651--27656
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 27657--27668
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 27669--27672
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[423] [424] [425] [426] [427]
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Underfull \hbox (badness 10000) in paragraph at lines 28069--28073
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[429] [430]
Underfull \hbox (badness 10000) in paragraph at lines 28216--28219
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[431]
Underfull \hbox (badness 7925) in paragraph at lines 28297--28301
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 28297--28301
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 28302--28311
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443]
[444] [445] [446] [447]
Underfull \hbox (badness 2726) in paragraph at lines 29298--29301
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459]
Underfull \hbox (badness 1603) in paragraph at lines 30048--30051
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
[472] [473] [474]
Underfull \hbox (badness 1533) in paragraph at lines 31085--31088
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[475] [476] [477]
Underfull \hbox (badness 1163) in paragraph at lines 31248--31259
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503]
Underfull \hbox (badness 10000) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 32911--32915
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 32932--32934
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 32935--32939
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[504] [505]
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[507] [508] [509] [510] [511] [512] [513]
Underfull \hbox (badness 1655) in paragraph at lines 33529--33531
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525]
[526] [527] [528] [529] [530] [531] [532]
Underfull \hbox (badness 2261) in paragraph at lines 34735--34740
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544]
[545] [546] [547] [548] [549]
Underfull \hbox (badness 10000) in paragraph at lines 35855--35866
\T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars
ing-[]c-[]command-[]line-[]arguments ?
[550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561]
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 37386--37388
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[574]
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[576] [577] [578] [579] [580]
Underfull \hbox (badness 2913) in paragraph at lines 37806--37810
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[581] [582] [583]
Underfull \hbox (badness 1072) in paragraph at lines 38052--38056
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 38057--38061
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',
[584]
Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 38097--38103
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 38112--38119
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 38112--38119
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[585] [586] [587]
Underfull \hbox (badness 2644) in paragraph at lines 38347--38351
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

[588] [589] [590]
Underfull \hbox (badness 1142) in paragraph at lines 38500--38506
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d
[591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602]
[603] [604] [605] [606] [607] [608] [609] [610] [611]
Underfull \hbox (badness 1158) in paragraph at lines 39801--39803
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[612] [613] [614] [615] [616] [617] [618] [619] [620]
Underfull \hbox (badness 1137) in paragraph at lines 40391--40397
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
[621]
Underfull \hbox (badness 4967) in paragraph at lines 40410--40415
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[622] [623]
Underfull \hbox (badness 1616) in paragraph at lines 40530--40535
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[624] [625] [626] [627] [628] [629] [630] [631]
Underfull \hbox (badness 1472) in paragraph at lines 41077--41080
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
[632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643]
[644] [645] [646]
Underfull \hbox (badness 10000) in paragraph at lines 42003--42007
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/
m/n/10 length(bin) >
[647] [648] [649] [650]
Underfull \hbox (badness 10000) in paragraph at lines 42254--42257
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[651] [652] [653]
Underfull \hbox (badness 10000) in paragraph at lines 42438--42442
[][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[654] [655] [656] [657] [658] [659] [660] [661] [662]
Underfull \hbox (badness 10000) in paragraph at lines 43064--43067
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[663] [664] [665] [666] [667]
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[669] [670] [671] [672] [673] [674] [675]
Underfull \hbox (badness 1990) in paragraph at lines 43986--43994
[]\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 43986--43994
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
[688] [689] [690]
Underfull \hbox (badness 2452) in paragraph at lines 44955--44961
[][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 ,
[691] [692] [693] [694] [695] [696]
Underfull \hbox (badness 3668) in paragraph at lines 45353--45355
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[697] [698]
Underfull \hbox (badness 2401) in paragraph at lines 45483--45487
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w
arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[699] [700] [701]
Underfull \hbox (badness 2111) in paragraph at lines 45691--45696
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 
is not empty, these are used as col-umn names.
[702] [703] [704] [705]
Underfull \hbox (badness 4001) in paragraph at lines 45937--45939
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .

[706] [707] [708] [709] [710] [711]
Underfull \hbox (badness 5417) in paragraph at lines 46302--46306
[]\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[712]
Underfull \hbox (badness 10000) in paragraph at lines 46363--46367
[]\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[713]) (./compiler-pkg.tex [714]
Chapter 2.
[715] [716] [717] [718]) (./datasets-pkg.tex
Chapter 3.
[719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730]
[731] [732] [733] [734] [735]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747]
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771]
[772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783]
[784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795]
[796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802]
Chapter 4.
[803] [804] [805] [806] [807]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\
T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[808] [809] [810] [811] [812] [813] [814] [815] [816] [817]
Underfull \hbox (badness 1424) in paragraph at lines 898--900
[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an
d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be 
spec-i-fied as
[818] [819] [820] [821]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[822] [823]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[824] [825] [826] [827] [828]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [
][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T
1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and


Underfull \hbox (badness 3302) in paragraph at lines 1624--1628
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
[829] [830] [831] [832] [833] [834] [835]
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[]\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph
a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1
0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10
 ,
[836]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/
zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\
T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m
/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet
ica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[888]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 
, []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na
rrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi
4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m
/n/10 ,
[891] [892]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z
i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4
/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , []
\T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[917]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n
/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex
Chapter 5.
[929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940]
[941] [942] [943] [944]
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
[945] [946] [947] [948] [949] [950]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work
s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p
tm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca
led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch)
,
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[1012 </<<PKGBUILDDIR>>/library/graphics/help/figures//mai.pdf
>]
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[][] 
[1038 </<<PKGBUILDDIR>>/library/graphics/help/figures//pch.pdf
>] [1039]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/n/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par
(c("font.lab", "cex.lab",
[1073]
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l.9018 \HeaderA{units}{Graphical Units}{units}
                                               [1074] [1075] [1076] [1077])
(./grid-pkg.tex [1078]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and
 []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c
u-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo
rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 ,
[1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109]
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1
0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1173] [1174]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185]
[1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196]
[1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206])
(./methods-pkg.tex
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten
ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1
0 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m
/n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/n/10 where =
[1238] [1239] [1240] [1241] [1242]
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4
/m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl
ot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r
e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 
re-stores the
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[]\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string 
name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
[1259]
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[] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude = "numeric",
[1260]
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[]\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
, contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 
for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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[]\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class []
[][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use
d by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/
n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef
Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                   \relax 
l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
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l.7243 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1308]
Underfull \hbox (badness 2050) in paragraph at lines 7304--7308
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1309] [1310] [1311]
Underfull \hbox (badness 1286) in paragraph at lines 7492--7494
[]\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on
ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t
yp-i-cally
[1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322]
[1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333]
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Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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Underfull \hbox (badness 1320) in paragraph at lines 301--304
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374]
[1375] [1376] [1377] [1378] [1379] [1380]
Underfull \hbox (badness 3386) in paragraph at lines 1402--1405
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1381] [1382] [1383]) (./splines-pkg.tex [1384]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395]
[1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex
Chapter 10.
[1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411]
[1412] [1413] [1414]
Underfull \hbox (badness 1412) in paragraph at lines 887--889
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
[1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422]
Underfull \hbox (badness 2503) in paragraph at lines 1369--1372
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433]
[1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444]
[1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455]
[1456]
Underfull \hbox (badness 2503) in paragraph at lines 3530--3533
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467]
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476]
Underfull \hbox (badness 3989) in paragraph at lines 4787--4794
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2556) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[]
\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi
lter"[]\T1/ptm/m/n/10 . For
[1487] [1488] [1489] [1490] [1491] [1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 5838--5842
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506]
Underfull \hbox (badness 7081) in paragraph at lines 6632--6635
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method

Underfull \hbox (badness 10000) in paragraph at lines 6636--6638
[]\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[1518] [1519]
Underfull \hbox (badness 10000) in paragraph at lines 7493--7496
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[1543] [1544] [1545] [1546]
Underfull \hbox (badness 2626) in paragraph at lines 9172--9175
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1547] [1548]
Underfull \hbox (badness 2503) in paragraph at lines 9279--9283
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559]
[1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569]
Underfull \hbox (badness 4518) in paragraph at lines 10631--10636
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1570] [1571] [1572] [1573] [1574]
Underfull \hbox (badness 2142) in paragraph at lines 10992--10995
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11011--11014
[]\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to
 [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each 
IWLS it-er-a-tion. Hence,
[1575]
Underfull \hbox (badness 1708) in paragraph at lines 11073--11077
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1576] [1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1694) in paragraph at lines 11469--11472
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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                   \relax 
l.11950 \aliasA{hat}{influence.measures}{hat}
                                              [1590] [1591]
Underfull \hbox (badness 1484) in paragraph at lines 12092--12094
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 10000) in paragraph at lines 12694--12696
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit =
[1602] [1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 2894) in paragraph at lines 13030--13034
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1608] [1609] [1610] [1611] [1612] [1613]
Underfull \hbox (badness 1496) in paragraph at lines 13444--13450
dom-iza-tion Dis-tri-bu-tions of
[1614] [1615] [1616] [1617] [1618] [1619] [1620]
Underfull \hbox (badness 4518) in paragraph at lines 13842--13847
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630]
Underfull \hbox (badness 4518) in paragraph at lines 14503--14508
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1631] [1632]
Underfull \hbox (badness 6412) in paragraph at lines 14641--14645
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte
rpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14648--14650
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is
[1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643]
[1644] [1645] [1646] [1647] [1648] [1649] [1650]
Underfull \hbox (badness 2503) in paragraph at lines 15724--15728
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1651] [1652]
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Underfull \hbox (badness 10000) in paragraph at lines 16237--16243
[]\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/
10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16237--16243
[]\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re
sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/
ptm/m/n/10 sums any terms
[1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670]
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Underfull \hbox (badness 1158) in paragraph at lines 17888--17891
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1
/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1686] [1687]
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Underfull \hbox (badness 1377) in paragraph at lines 18915--18920
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18920--18923
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 18933--18937
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18933--18937
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + 
reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18941--18945
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T
1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1
0 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1704] [1705] [1706]
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Overfull \hbox (15.73795pt too wide) in paragraph at lines 19166--19166
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19169--19169
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1708] [1709] [1710] [1711] [1712] [1713] [1714]
Underfull \hbox (badness 1337) in paragraph at lines 19628--19631
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 20099--20105
\T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty =
 cook.lty, col = cook.col, text.col
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 1194) in paragraph at lines 20429--20432
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1729] [1730] [1731] [1732] [1733] [1734]
Underfull \hbox (badness 2503) in paragraph at lines 20808--20811
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1735]
Underfull \hbox (badness 3919) in paragraph at lines 20835--20837
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson
[1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746]
[1747] [1748] [1749] [1750] [1751] [1752] [1753]
Underfull \hbox (badness 10000) in paragraph at lines 21913--21919
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764]
[1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775]
[1776]
Underfull \hbox (badness 1337) in paragraph at lines 23270--23276
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 1436) in paragraph at lines 23695--23698
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2,
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 23836--23837
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
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[1796] [1797] [1798] [1799] [1800]
Underfull \hbox (badness 1824) in paragraph at lines 24808--24814
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f
irst re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 24808--24814
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1801]
Underfull \hbox (badness 10000) in paragraph at lines 24829--24832
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] =
[1802]
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Underfull \hbox (badness 2165) in paragraph at lines 25410--25415
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1
/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1811] [1812] [1813] [1814]
Underfull \hbox (badness 1867) in paragraph at lines 25619--25621
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 25634--25638
[]\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <-
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[1841]
Underfull \hbox (badness 3514) in paragraph at lines 27282--27287
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1842] [1843] [1844] [1845]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1846]
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 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 

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 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1847] [1848] [1849]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1850] [1851]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1852]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1853] [1854]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1855] [1856]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1875] [1876] [1877]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1878] [1879] [1880] [1881] [1882] [1883]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1884] [1885] [1886] [1887] [1888]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899]
[1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907]
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[
]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect
 []\T1/zi4/m/n/10 interval =
[1908] [1909] [1910]
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[1912] [1913]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922]
Underfull \hbox (badness 1337) in paragraph at lines 32085--32089
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1923] [1924] [1925]
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1926] [1927] [1928]
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 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934]
Chapter 11.
[1935] [1936] [1937]
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Underfull \vbox (badness 10000) has occurred while \output is active [1939]
[1940] [1941] [1942]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1943] [1944] [1945])
(./tcltk-pkg.tex [1946]
Chapter 12.
[1947] [1948] [1949] [1950] [1951] [1952] [1953]
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[]\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
[1956] [1957] [1958] [1959] [1960]
Underfull \vbox (badness 10000) has occurred while \output is active [1961]
[1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex
Chapter 13.
[1969]

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[1970]
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[]\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
 be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1971] [1972]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi
bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn
Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [
]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[
]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi
4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and
[1973] [1974]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1975]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
[1987]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1988]
Underfull \hbox (badness 10000) in paragraph at lines 1217--1220
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220
[]\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [
]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[1989] [1990] [1991] [1992] [1993]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit
h its func-tion-al-ity in-te-grated into that of

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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1994] [1995]
Underfull \hbox (badness 4096) in paragraph at lines 1714--1722
\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[1996] [1997] [1998] [1999]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1926 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1927 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [2000] [2001] [2002]
[2003] [2004]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2229--2229
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[2005] [2006] [2007]
Underfull \hbox (badness 4096) in paragraph at lines 2398--2406
\T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 
. Char-ac-ter string
[2008] [2009] [2010] [2011] [2012] [2013] [2014]

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[2015] [2016] [2017] [2018] [2019]
Underfull \hbox (badness 1424) in paragraph at lines 3195--3197
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
[2020] [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030]
Underfull \hbox (badness 10000) in paragraph at lines 3897--3899
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[2031] [2032]
Underfull \hbox (badness 10000) in paragraph at lines 4036--4039
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2033] [2034]
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[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[2035] [2036] [2037] [2038] [2039]
Underfull \hbox (badness 1796) in paragraph at lines 4446--4451
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=
[2040]
Underfull \hbox (badness 4699) in paragraph at lines 4496--4500
[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 
msgmerge []\T1/ptm/m/n/10 in ad-di-tion to

Underfull \hbox (badness 1946) in paragraph at lines 4496--4500
[]\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m
/n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called
 from

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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[2041] [2042] [2043] [2044] [2045]
Underfull \hbox (badness 2197) in paragraph at lines 4799--4809
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

Underfull \hbox (badness 1571) in paragraph at lines 4865--4869
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050]
Chapter 14.
[2051]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',
[2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061]
Underfull \hbox (badness 10000) in paragraph at lines 726--732
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2062] [2063] [2064]
Underfull \hbox (badness 3861) in paragraph at lines 931--936
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
[2065] [2066] [2067]
Underfull \hbox (badness 3323) in paragraph at lines 1115--1123
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it
/10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m
$\T1/ptm/m/n/10 , in-di-cat-

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\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

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\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

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\T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.
max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c
ally.

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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by

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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2076]

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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2087] [2088] [2089] [2090] [2091] [2092]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2710 ... the Clipboard in MS Windows}{clipboard}
                                                   [2093] [2094] [2095]
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[2107] [2108] [2109] [2110] [2111] [2112]
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2113]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2114] [2115] [2116]
Underfull \hbox (badness 10000) in paragraph at lines 4275--4277
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
[2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]
[2128]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
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<to be read again> 
                   \relax 
l.5044 ...mat Unordered and Ordered Lists}{format}
                                                  
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l.5044 ...mat Unordered and Ordered Lists}{format}
                                                   [2129] [2130] [2131]
[2132] [2133] [2134] [2135] [2136] [2137]
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2138] [2139] [2140] [2141] [2142] [2143]
Underfull \hbox (badness 1448) in paragraph at lines 5946--5951
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151]

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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
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[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will
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[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
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[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
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[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
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onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


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[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

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[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

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 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not 
have

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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/it/10 Rtools 
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n
/10 which used
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

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[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

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\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

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[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
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(./fullrefman.aux)

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@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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[7]
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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
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[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
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@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#

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@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
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mming_language#

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@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
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[39]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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Chapter 5 [22] Chapter 6 [23]
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[46] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58]
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[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][][]@smallrm .| 

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[]@textrm For In-tel Big Sur and later there is [][]@texttt https://  github.  
com/  fxcoudert/

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@texttt gfortran-for-macOS/  releases/  download/  11.  2-bigsur-intel/  gfortr
an-Intel-11.

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@texttt gfortran-for-macOS/  releases/  download/  11.  3-monterey-intel/  gfor
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[68]
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 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:$LOCAL/lib/pkgconfig:/
usr/lib/pkgconfig[] 
[69] [70]
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[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| 
[71] [72]
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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents
/Home[] 

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@texttt downloads/  zulu-community/  ?  os=macos&  architecture=arm-64-bit&  pa
ckage=jdk[][][] @textrm and
[73] [74]
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 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli
b \[] 

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 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

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 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat
ic link the For-

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 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a
[] @textrm and

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 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version-
min=10.13"[] 
[75] [76] (Function and variable index) [77]
No file R-admin.vrs.
(Concept index) [78]
No file R-admin.cps.
(Environment variable index) [79]
No file R-admin.ens.
[80] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
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exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (83 pages, 474920 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
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(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
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Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
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(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
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onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-admin.aux)
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16]
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@textrm (@texttt https://  cran.  r-project.  org/  bin/  windows/  Rtools/  rt
ools42/  rtools.  html[]@textrm )[][].
[17] [18] Chapter 4 [19] [20] [21]
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@texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex
trm , @texttt org.r-project.x86_
Chapter 5 [22] Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-

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@textrm pack-ages (@texttt https://  cran.  r-project.  org/  bin/  windows/  b
ase/  howto-R-4.  2.  html[]@textrm )[][] for
[26] [27] [28]
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 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm
64" CXXFLAGS=-O2[] 
[29] [30] [31] [32]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
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 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42] [43] [44] [45]
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 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58]
[59] Appendix C [60] [61] [62] [63]
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 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[64] [65]
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 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/pcre2-10.39-d
arwin.17-x86_64.tar.xz[] 

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 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/xz-5.2.5-darw
in.17-x86_64.tar.xz[] 
[66] l.5175: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5175: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5175: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [67]
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 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15.
6.tar.gz[] 

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[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][][]@smallrm .| 

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[]@textrm For In-tel Big Sur and later there is [][]@texttt https://  github.  
com/  fxcoudert/

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@texttt gfortran-for-macOS/  releases/  download/  11.  2-bigsur-intel/  gfortr
an-Intel-11.

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@texttt gfortran-for-macOS/  releases/  download/  11.  3-monterey-intel/  gfor
tran-Intel-11.
[68]
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 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:$LOCAL/lib/pkgconfig:/
usr/lib/pkgconfig[] 
[69] [70]
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[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| 
[71] [72]
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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents
/Home[] 

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@texttt downloads/  zulu-community/  ?  os=macos&  architecture=arm-64-bit&  pa
ckage=jdk[][][] @textrm and
[73] [74]
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 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli
b \[] 

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 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

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ic link the For-

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 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a
[] @textrm and

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 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version-
min=10.13"[] 
[75] [76] (Function and variable index) [77]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.vrs) (Concept index)
[78] (/<<PKGBUILDDIR>>/doc/manual/R-admin.cps)
(Environment variable index) [79]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.ens) [80] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
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exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (85 pages, 519011 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
@setfilename R-data.info
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
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(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1
[2]
Writing index file R-data.cp
Cross reference values unknown; you must run TeX again. [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 434--437
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

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[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
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@textrm (@texttt https://  www.  ibm.  com/  software/  data/  informix/  []@te
xtrm )[][]; [][]Oracle (@texttt https://  www.  oracle.
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
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[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
No file R-data.vrs.
(Concept index) [34]
No file R-data.cps.
[35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (38 pages, 269293 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
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(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc [-1]) [-2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-data.aux) [1] Chapter 1
[2]
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[3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 434--437
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

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[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
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@textrm (@texttt https://  www.  ibm.  com/  software/  data/  informix/  []@te
xtrm )[][]; [][]Oracle (@texttt https://  www.  oracle.
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
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[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
(/<<PKGBUILDDIR>>/doc/manual/R-data.vrs [34]) (Concept index)
[35] (/<<PKGBUILDDIR>>/doc/manual/R-data.cps) [36] [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
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cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
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/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
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fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (41 pages, 309038 bytes).
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 restricted \write18 enabled.
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(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
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(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
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onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc [-1]) [-2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-data.aux) [1] Chapter 1
[2]
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[3] [4] [5]
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[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

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[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
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@textrm (@texttt https://  www.  ibm.  com/  software/  data/  informix/  []@te
xtrm )[][]; [][]Oracle (@texttt https://  www.  oracle.
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
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[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
(/<<PKGBUILDDIR>>/doc/manual/R-data.vrs [34]) (Concept index)
[35] (/<<PKGBUILDDIR>>/doc/manual/R-data.cps) [36] [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
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hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
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[1]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

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 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[20]
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@texttt org/  package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @
textrm (@texttt https://  CRAN.  R-project.  org/
[21] [22] [23] [24] [25]
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 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[] 
[26] [27] [28]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[29] [30]
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[][][][][]@smalltt https://  www.  openmp.  org/  [][][]@smallrm , [][]@smalltt
 https://  en.  wikipedia.  org/  wiki/  OpenMP[][][]@smallrm , [][]@smalltt ht
tps://  hpc.  llnl.  gov/
[31] [32] [33]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[34] [35]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[36] [37]
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 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 

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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[38] [39] [40]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[58] [59] [60]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[61] [62] [63] [64] [65] [66]
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 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
 20)[] 

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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[67] [68] [69] [70] [71]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[72] [73]
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 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
[74]
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 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[75] [76]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[77]
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 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 

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[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[78] [79] [80]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96] [97]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108]
[109]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[110] [111] Chapter 4 [112] [113] [114] [115]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[116]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[117]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[118] [119] [120] [121]
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@texttt controlling-code-generation[][][]@textrm , [][]@texttt https://  clang.
  llvm.  org/  docs/  AddressSanitizer.

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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[122] [123]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[124]
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[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][][]
[125]
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[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.

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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[126]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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cu)),[] 
[127]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[128] [129] [130]
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[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[131]
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ration [-Wlto-type-mismatch][] 

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ttt 1[] 
[132]
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ttt 1[] 

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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143]
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 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[144] [145] [146] [147] [148] [149] [150] [151]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162]
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SE");[] 
[163]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[164] [165] [166] [167] [168] [169] [170]
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orry"[] 
[171] [172]
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a)));[] 
[173]
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a)));[] 

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[174]
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alue));[] 
[175] [176]
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xit);[] 
[177]
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NilValue);[] 
[178] [179]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187]
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 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but


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[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/

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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/

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@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[188] [189] [190] [191] [192] [193] [194] [195] [196] [197]
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.last, decreasing)[]@textrm .
[198] Warning: unbalanced parentheses in @def... [199] [200]
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 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[201] [202] [203] [204] [205] Chapter 7 [206] [207] Chapter 8 [208] [209]
[210]
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tatic libR[] 
[211]
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nst char *);[] 
[212] [213] [214] [215] [216] [217] [218] [219] [220]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [221]
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[223] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
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exmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-d
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e1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
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b>
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

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 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[20]
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@texttt org/  package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @
textrm (@texttt https://  CRAN.  R-project.  org/
[21] [22] [23] [24] [25]
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 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[] 
[26] [27] [28]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[29] [30]
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[][][][][]@smalltt https://  www.  openmp.  org/  [][][]@smallrm , [][]@smalltt
 https://  en.  wikipedia.  org/  wiki/  OpenMP[][][]@smallrm , [][]@smalltt ht
tps://  hpc.  llnl.  gov/
[31] [32] [33]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[34] [35]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[36] [37]
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 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 

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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[38] [39] [40]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[58] [59] [60]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[61] [62] [63] [64] [65] [66]
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 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
 20)[] 

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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[67] [68] [69] [70] [71]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[72] [73]
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 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
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 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[75] [76]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[77]
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 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 

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[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[78] [79] [80]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96] [97]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108]
[109]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[110] [111] Chapter 4 [112] [113] [114] [115]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[116]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[117]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[118] [119] [120] [121]
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@texttt controlling-code-generation[][][]@textrm , [][]@texttt https://  clang.
  llvm.  org/  docs/  AddressSanitizer.

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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[122] [123]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[124]
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[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][][]
[125]
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[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.

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pper bound of 0[] 
[126]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[128] [129] [130]
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[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[131]
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ttt 1[] 
[132]
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ttt 1[] 

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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143]
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 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[144] [145] [146] [147] [148] [149] [150] [151]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162]
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SE");[] 
[163]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[164] [165] [166] [167] [168] [169] [170]
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orry"[] 
[171] [172]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[173]
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s)) {[] 

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a)));[] 

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s)) {[] 
[174]
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alue));[] 
[175] [176]
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xit);[] 
[177]
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NilValue);[] 
[178] [179]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187]
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 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but


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[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/

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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/

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@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[188] [189] [190] [191] [192] [193] [194] [195] [196] [197]
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 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[198] Warning: unbalanced parentheses in @def... [199] [200]
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 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[201] [202] [203] [204] [205] Chapter 7 [206] [207] Chapter 8 [208] [209]
[210]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[211]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[212] [213] [214] [215] [216] [217] [218] [219] [220]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [221]
(/<<PKGBUILDDIR>>/doc/manual/R-exts.vrs [222] [223] [224]
[225]) (Concept index) [226]
(/<<PKGBUILDDIR>>/doc/manual/R-exts.cps [227]) [228] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
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f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
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tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
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onts/map/pdftex/updmap/pdftex.map}] [2]
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[-4]) [-5] (/<<PKGBUILDDIR>>/doc/manual/R-exts.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.aux) Chapter 1 [1]
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[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

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 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[20]
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@texttt org/  package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @
textrm (@texttt https://  CRAN.  R-project.  org/
[21] [22] [23] [24] [25]
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 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[] 
[26] [27] [28]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[29] [30]
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[][][][][]@smalltt https://  www.  openmp.  org/  [][][]@smallrm , [][]@smalltt
 https://  en.  wikipedia.  org/  wiki/  OpenMP[][][]@smallrm , [][]@smalltt ht
tps://  hpc.  llnl.  gov/
[31] [32] [33]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[34] [35]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[36] [37]
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 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 

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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[38] [39] [40]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55]
[56] [57]
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 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[58] [59] [60]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

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[61] [62] [63] [64] [65] [66]
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version 52.0[] 
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[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[78] [79] [80]
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[81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96] [97]
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[98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108]
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[110] [111] Chapter 4 [112] [113] [114] [115]
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[118] [119] [120] [121]
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[122] [123]
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[124]
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[128] [129] [130]
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[144] [145] [146] [147] [148] [149] [150] [151]
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[163]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[164] [165] [166] [167] [168] [169] [170]
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[171] [172]
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[173]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
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Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187]
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[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but


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[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/

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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
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@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
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[188] [189] [190] [191] [192] [193] [194] [195] [196] [197]
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[201] [202] [203] [204] [205] Chapter 7 [206] [207] Chapter 8 [208] [209]
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[212] [213] [214] [215] [216] [217] [218] [219] [220]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
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(/<<PKGBUILDDIR>>/doc/manual/R-exts.vrs [222] [223] [224]
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
ist.pdf> </<<PKGBUILDDIR>>/doc/manual/images/ecdf.pdf>
[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KxbnLE/r-base-4.2.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60]
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[61] [62] [63] [64] [65]
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[66] Chapter 12 [67] [68] [69] [70] [71]
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[78] [79] [80] [81] Chapter 13 [82]
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[83] Chapter 14 [84] [85]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
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(see the transcript file for additional information)</usr/share/texlive/texmf-d
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ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
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[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KxbnLE/r-base-4.2.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60]
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[61] [62] [63] [64] [65]
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[66] Chapter 12 [67] [68] [69] [70] [71]
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[72] [73] [74] [75] [76] </<<PKGBUILDDIR>>/doc/manual/images/f
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[78] [79] [80] [81] Chapter 13 [82]
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[83] Chapter 14 [84] [85]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
(/<<PKGBUILDDIR>>/doc/manual/R-intro.vrs [102] [103])
Appendix E [104] (/<<PKGBUILDDIR>>/doc/manual/R-intro.cps
[105]) Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
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[-4] (/<<PKGBUILDDIR>>/doc/manual/R-intro.toc)
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
ist.pdf> </<<PKGBUILDDIR>>/doc/manual/images/ecdf.pdf>
[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KxbnLE/r-base-4.2.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60]
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@texttt identity[]@textrm ,
[61] [62] [63] [64] [65]
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 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66] Chapter 12 [67] [68] [69] [70] [71]
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n-x})))[] 
[72] [73] [74] [75] [76] </<<PKGBUILDDIR>>/doc/manual/images/f
ig11.pdf> [77] </<<PKGBUILDDIR>>/doc/manual/images/fig12.pdf>
[78] [79] [80] [81] Chapter 13 [82]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
(/<<PKGBUILDDIR>>/doc/manual/R-intro.vrs [102] [103])
Appendix E [104] (/<<PKGBUILDDIR>>/doc/manual/R-intro.cps
[105]) Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/
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atrix 1.2-6[] 

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ics with methods[] 

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(group)generic[] 

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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] Chapter 7 [49]
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[50]
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xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
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[] @textrm pairs (with @textsl value[] @textrm a

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 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

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 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[][] func-tions used

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tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63]
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rbose[] 
[64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69]
[70] (Function and variable index) [71] [72]
No file R-ints.vrs.
(Concept index) [73]
No file R-ints.cps.
[74] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/te
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atrix 1.2-6[] 

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ics with methods[] 

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(group)generic[] 

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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] Chapter 7 [49]
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ib[]@textrm ,
[50]
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xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
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[] @textrm pairs (with @textsl value[] @textrm a

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 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

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 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[][] func-tions used

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tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63]
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 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve
rbose[] 
[64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69]
[70] (Function and variable index) [71] [72]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.vrs [73] [74])
(Concept index) [75] (/<<PKGBUILDDIR>>/doc/manual/R-ints.cps)
[76] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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atrix 1.2-6[] 

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ics with methods[] 

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 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1504--1504
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 2022--2022
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] Chapter 7 [49]
Underfull \hbox (badness 10000) in paragraph at lines 3768--3777
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[50]
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 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4139--4147
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

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 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

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 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[][] func-tions used

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 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63]
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 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve
rbose[] 
[64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69]
[70] (Function and variable index) [71] [72]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.vrs [73] [74])
(Concept index) [75] (/<<PKGBUILDDIR>>/doc/manual/R-ints.cps)
[76] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (81 pages, 469132 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
@setfilename R-lang.info
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-lang.cp
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
No file R-lang.vrs.
(Concept Index) [60]
No file R-lang.cps.
Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 330808 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.vrs [60]) (Concept Index)
[61] (/<<PKGBUILDDIR>>/doc/manual/R-lang.cps) [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (69 pages, 380195 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.vrs [60]) (Concept Index)
[61] (/<<PKGBUILDDIR>>/doc/manual/R-lang.cps) [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (69 pages, 380193 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr  \
		infodir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
gunzip -9v /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/*.gz
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.3% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.9% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 68.1% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-3.gz:	 78.5% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-3
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info.gz:	 70.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.4% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info.gz:	 68.7% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.9% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir		\
	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir.old
removed '/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir'
touch install-indep-stamp
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /<<PKGBUILDDIR>>/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 1792
-rw-rw-r-- 1 root root 1087152 Jun 29 15:18 libRmath.a
-rwxrwxr-x 1 root root  743680 Jun 29 15:18 libRmath.so
drwxr-xr-x 1 root root      22 Jun 29 15:42 pkgconfig
renamed 'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/<<PKGBUILDDIR>>/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc; \
	cat /<<PKGBUILDDIR>>/debian/Renviron-R_LIBS.patch | patch --dry-run;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
checking file Renviron
Hunk #1 succeeded at 51 with fuzz 2 (offset 18 lines).
dh_bash-completion
# edd 12 Jan 2016  new location
#install -m 0644 debian/R.bash-completion \
#	debian/r-base-core/usr/share/bash-completion/completions/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/Rlogo.svg	\
	debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg
install -m 0644 debian/icon-class-patch/R.desktop	\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
#dh_installmenu -a
# (cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /<<PKGBUILDDIR>>/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /<<PKGBUILDDIR>>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS
dh_strip -a
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: substitution variable ${perl:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package r-base-core: substitution variable ${perl:Depends} used, but is not defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.2.1-1_armhf.deb'.
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.2.1-1_armhf.deb'.
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.2.1-1_armhf.deb'.
dpkg-deb: building package 'r-base-core' in '../r-base-core_4.2.1-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-base_4.2.1-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-base_4.2.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-06-29T15:45:12Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-base_4.2.1-1_armhf.changes:
-----------------------------

Format: 1.8
Date: Thu, 23 Jun 2022 05:26:41 -0500
Source: r-base
Binary: r-base-core r-base-core-dbgsym r-mathlib r-mathlib-dbgsym
Architecture: armhf
Version: 4.2.1-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base-core - GNU R core of statistical computation and graphics system
 r-mathlib  - GNU R standalone mathematics library
Changes:
 r-base (4.2.1-1) unstable; urgency=medium
 .
   * New upstream version released this morning
 .
   * debian/control: Set Standards-Version: to current version
   * debian/Renviron.site: Correct one-char typo removing extra apostrophe
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Files:
 d027de01fc0b670058adacc7d8d27b8f 6293040 debug optional r-base-core-dbgsym_4.2.1-1_armhf.deb
 9ea176a56b40364361dfaeaf889fc4de 27778104 gnu-r optional r-base-core_4.2.1-1_armhf.deb
 012add3427e7b9094d8ffaf123bda7e9 14204 gnu-r optional r-base_4.2.1-1_armhf.buildinfo
 b2288eadbe7ba94023c26b0656329faf 211252 debug optional r-mathlib-dbgsym_4.2.1-1_armhf.deb
 f4ebf72cdd1d4e89048f04c79f63b1a8 2251668 gnu-r optional r-mathlib_4.2.1-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-base-core-dbgsym_4.2.1-1_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 6293040 bytes: control archive=1352 bytes.
    1041 bytes,    12 lines      control              
    1908 bytes,    18 lines      md5sums              
 Package: r-base-core-dbgsym
 Source: r-base
 Version: 4.2.1-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 6558
 Depends: r-base-core (= 4.2.1-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-base-core
 Build-Ids: 08f40ba960877c0335de25e988faa60e588aa040 0a7d7d7deb1c9c4ab697d0f689b8ff24647996ce 0b6b639b1e2d903774be5a645221d6ad8d150d78 1c5e23f581d989318f9f89dcc01d1e7c9409a7fa 1d9aa2a46f703bed42064518e724c9e9315ba823 37f0d40609076eab2d890567001d25f3f9d613b8 41fedce9af0e8bfc31e246d7e738ce4239185cec 67ec812f4693d9d8b25f4cd6522541afe134eab3 77d0b66e1c279b948efb0426f73a6b998c5d3d4b 839c8f57518f5fae631364dd91c3be6dce20eced 88ba07f60829dd4122c6c14cbd23ab3deabd84f5 a2af77625713c1517e93656c365be6223fc796d2 aed3d2da91f2628dd0b1ce92d04e1c11aabd074c b16bad448a6257727efd69bab5b5154cc1f05582 caa14e1ced333ded3347b03fc1d790f145fd2796 d04655bf4cd641a5d67cc4a72c971a40c26bda0f daeb52564f2d69d465e492129403f51f336b4342 ec0531bdade93ecd43e34dcf6f95958ad3d465bc

drwxr-xr-x root/root         0 2022-06-23 10:26 ./
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/08/
-rw-r--r-- root/root      6016 2022-06-23 10:26 ./usr/lib/debug/.build-id/08/f40ba960877c0335de25e988faa60e588aa040.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root    212480 2022-06-23 10:26 ./usr/lib/debug/.build-id/0a/7d7d7deb1c9c4ab697d0f689b8ff24647996ce.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root     49604 2022-06-23 10:26 ./usr/lib/debug/.build-id/0b/6b639b1e2d903774be5a645221d6ad8d150d78.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/1c/
-rw-r--r-- root/root     12156 2022-06-23 10:26 ./usr/lib/debug/.build-id/1c/5e23f581d989318f9f89dcc01d1e7c9409a7fa.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/1d/
-rw-r--r-- root/root    377544 2022-06-23 10:26 ./usr/lib/debug/.build-id/1d/9aa2a46f703bed42064518e724c9e9315ba823.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/37/
-rw-r--r-- root/root     76332 2022-06-23 10:26 ./usr/lib/debug/.build-id/37/f0d40609076eab2d890567001d25f3f9d613b8.debug
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/41/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/67/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/ae/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/ec/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/
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lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-base-core-dbgsym -> r-base-core


r-base-core_4.2.1-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 27778104 bytes: control archive=26236 bytes.
      93 bytes,     5 lines      conffiles            
    3526 bytes,    45 lines      control              
   82577 bytes,  1026 lines      md5sums              
    2765 bytes,    75 lines   *  postinst             #!/bin/sh
     207 bytes,     5 lines   *  postrm               #!/bin/sh
     857 bytes,    37 lines   *  preinst              #!/bin/sh
     879 bytes,    29 lines   *  prerm                #!/bin/sh
 Package: r-base-core
 Source: r-base
 Version: 4.2.1-1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 43120
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.33), libcairo2 (>= 1.6.0), libcurl4 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu71 (>= 71.1-1~), libjpeg62-turbo (>= 1.3.1), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre2-8-0 (>= 10.22), libpng16-16 (>= 1.6.2-1), libreadline8 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtirpc3 (>= 1.0.2), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Breaks: r-bioc-graph (<< 1.62.0-1~), r-cran-bbmle (<< 1.0.20-5~), r-cran-biocmanager (<< 1.30.4+dfsg-2~), r-cran-caret (<< 6.0-84-2~), r-cran-cmprsk (<< 2.2-8-1~), r-cran-coin (<< 1.3-0-1~), r-cran-dendextend (<< 1.12.0+dfsg-1~), r-cran-fields (<< 9.8-3-1~), r-cran-filehash (<< 2.4-2-2~), r-cran-future (<< 1.14.0+dfsg-1~), r-cran-genetics (<< 1.3.8.1.2-1~), r-cran-haplo.stats (<< 1.7.9-4~), r-cran-igraph (<< 1.2.4.1-1~), r-cran-lava (<< 1.6.5-1~), r-cran-libcoin (<< 1.0-4-1~), r-cran-msm (<< 1.6.7-1~), r-cran-permute (<< 0.9-5-1~), r-cran-phangorn (<< 2.5.5-1~), r-cran-popepi (<< 0.4.7-1~), r-cran-recipes (<< 0.1.6-1~), r-cran-sp (<< 1:1.3-1-2~), r-cran-spam (<< 2.2-2-1~), r-cran-units (<< 0.6-3-1~), r-cran-vegan (<< 2.5-5+dfsg-1~), r-cran-zelig (<< 5.1.6.1-1~)
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-api-4.0, r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2022-06-23 10:26 ./
drwxr-xr-x root/root         0 2022-06-23 10:26 ./etc/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./etc/R/
-rw-r--r-- root/root      8554 2022-06-23 10:26 ./etc/R/Makeconf
-rw-r--r-- root/root      1983 2022-06-23 10:26 ./etc/R/Renviron.site
-rw-r--r-- root/root       988 2022-06-23 10:26 ./etc/R/Rprofile.site
-rw-r--r-- root/root       789 2022-06-23 10:26 ./etc/R/ldpaths
-rw-r--r-- root/root      1098 2022-06-23 10:26 ./etc/R/repositories
drwxr-xr-x root/root         0 2022-06-23 10:26 ./etc/ld.so.conf.d/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/bin/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/R/
lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
-rw-r--r-- root/root        46 2022-06-23 10:26 ./usr/lib/R/SVN-REVISION
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/R/bin/
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-rw-r--r-- root/root      7959 2022-06-23 10:26 ./usr/share/R/share/licenses/license.db
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-rw-r--r-- root/root       607 2022-06-23 10:26 ./usr/share/R/share/texmf/tex/latex/omscmtt.fd
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/applications/
-rw-r--r-- root/root       233 2022-06-23 10:26 ./usr/share/applications/R.desktop
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/bash-completion/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/bash-completion/completions/
-rw-r--r-- root/root     13596 2022-03-25 00:27 ./usr/share/bash-completion/completions/R
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/r-base-core/
-rw-r--r-- root/root     35933 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.0.gz
-rw-r--r-- root/root    108753 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.1.gz
-rw-r--r-- root/root     96630 2020-03-26 23:02 ./usr/share/doc/r-base-core/NEWS.2.Rd.gz
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lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
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-rw-r--r-- root/root      3026 2022-03-25 00:27 ./usr/share/doc/r-base-core/README.mathlib
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lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-base-core/doc -> ../../R/doc
lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/lintian/
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r-mathlib-dbgsym_4.2.1-1_armhf.deb
----------------------------------

 new Debian package, version 2.0.
 size 211252 bytes: control archive=520 bytes.
     337 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-mathlib-dbgsym
 Source: r-base
 Version: 4.2.1-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 233
 Depends: r-mathlib (= 4.2.1-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-mathlib
 Build-Ids: 0e6e478eaad0f6a24c2695ad8bbd0315b1a800ce

drwxr-xr-x root/root         0 2022-06-23 10:26 ./
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/debug/.build-id/0e/
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-mathlib-dbgsym -> r-mathlib


r-mathlib_4.2.1-1_armhf.deb
---------------------------

 new Debian package, version 2.0.
 size 2251668 bytes: control archive=2144 bytes.
    1760 bytes,    39 lines      control              
    1502 bytes,    22 lines      md5sums              
     369 bytes,    27 lines   *  postinst             #!/bin/sh
      21 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: r-mathlib
 Source: r-base
 Version: 4.2.1-1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 2574
 Depends: libc6 (>= 2.29)
 Recommends: r-base-core (= 4.2.1-1), r-base-dev (= 4.2.1-1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

drwxr-xr-x root/root         0 2022-06-23 10:26 ./
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drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       173 2022-06-23 10:26 ./usr/lib/pkgconfig/libRmath.pc
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root     35933 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.0.gz
-rw-r--r-- root/root    108753 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.1.gz
-rw-r--r-- root/root     96630 2020-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz
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-rw-r--r-- root/root    122261 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.Rd.gz
-rw-r--r-- root/root    113067 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.gz
-rw-r--r-- root/root    516302 2022-06-23 10:26 ./usr/share/doc/r-mathlib/NEWS.3.rds.gz
-rw-r--r-- root/root     43169 2022-06-17 22:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz
lrwxrwxrwx root/root         0 2022-06-23 10:26 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    211602 2022-06-23 10:26 ./usr/share/doc/r-mathlib/NEWS.pdf.gz
-rw-r--r-- root/root    177225 2022-06-23 10:26 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2018-09-25 08:47 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root      3026 2022-03-25 00:27 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root     35050 2022-06-23 10:26 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     39591 2022-06-23 10:26 ./usr/share/doc/r-mathlib/changelog.gz
-rw-r--r-- root/root     20761 2022-03-25 00:27 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1371 2018-09-25 08:46 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/lintian/
drwxr-xr-x root/root         0 2022-06-23 10:26 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       364 2022-03-25 00:27 ./usr/share/lintian/overrides/r-mathlib


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 340272
Build-Time: 6110
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 3191
Job: r-base_4.2.1-1
Machine Architecture: armhf
Package: r-base
Package-Time: 9418
Source-Version: 4.2.1-1
Space: 340272
Status: successful
Version: 4.2.1-1
--------------------------------------------------------------------------------
Finished at 2022-06-29T15:45:12Z
Build needed 02:36:58, 340272k disc space
Raspbian Package Auto-Building

Build log for r-base (4.2.1-1) on armhf
