Raspbian Package Auto-Building

r-base → 3.6.1-5 → armhf → 2019-09-25 07:58:46

sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019

+==============================================================================+
| r-base 3.6.1-5 (armhf)                       Wed, 25 Sep 2019 06:12:40 +0000 |
+==============================================================================+

Package: r-base
Version: 3.6.1-5
Source Version: 3.6.1-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-a0c10930-01d6-4496-9ca8-06d8bf2eb42a' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.5 MB in 28s (862 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-base' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/edd/r-base.git
Please use:
git clone https://salsa.debian.org/edd/r-base.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 30.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-base 3.6.1-5 (dsc) [3016 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-base 3.6.1-5 (tar) [30.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-base 3.6.1-5 (diff) [96.0 kB]
Fetched 30.6 MB in 13s (2357 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-base-KdjT4N/r-base-3.6.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-base-KdjT4N' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZInSBF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZInSBF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZInSBF/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2606 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ZInSBF/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12171 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion
Filtered Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/<<BUILDDIR>>/resolver-ZInSBF/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-base-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Sources [808 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Packages [838 B]
Fetched 2979 B in 1s (3494 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ZInSBF/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...

Install r-base build dependencies (apt-based resolver)
------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bison bsdmainutils
  ca-certificates ca-certificates-java debhelper default-jdk
  default-jdk-headless default-jre default-jre-headless dh-autoreconf
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-9
  gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  groff-base icu-devtools intltool-debian java-common libarchive-zip-perl
  libasound2 libasound2-data libavahi-client3 libavahi-common-data
  libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli1 libbsd0
  libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2
  libcairo2-dev libcroco3 libcups2 libcurl4 libcurl4-openssl-dev libdatrie1
  libdbus-1-3 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-etnaviv1
  libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1
  libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontconfig1
  libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libfribidi-dev
  libfribidi0 libgfortran-9-dev libgfortran5 libgif7 libgirepository-1.0-1
  libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0
  libglx0 libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu-dev libicu63 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libllvm8 liblzma-dev
  liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmount-dev libmpdec2
  libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnspr4 libnss3
  libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0
  libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng-dev libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev
  libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib
  libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev
  librtmp1 libselinux1-dev libsensors-config libsensors5 libsepol1-dev
  libsigsegv2 libsm-dev libsm6 libsombok3 libssh2-1 libssl1.1
  libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53
  libtexluajit2 libtext-unidecode-perl libthai-data libthai0 libtiff-dev
  libtiff5 libtiff5-dev libtiffxx5 libtinfo5 libtk8.6 libtool libuchardet0
  libunicode-linebreak-perl libunwind8 libwebp6 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev
  libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6
  libxtst6 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack
  openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre
  openjdk-11-jre-headless openssl pango1.0-tools pkg-config po-debconf
  preview-latex-style python python-minimal python2 python2-minimal python2.7
  python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal
  python3.7 python3.7-minimal sensible-utils t1utils tcl8.6 tcl8.6-dev
  tex-common texinfo texlive-base texlive-binaries texlive-extra-utils
  texlive-fonts-extra texlive-fonts-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures
  texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev x11-common x11-xkb-utils
  x11proto-core-dev x11proto-dev x11proto-scrnsaver-dev x11proto-xext-dev
  xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist
  whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff
  libasound2-plugins alsa-utils liblapack-doc libcairo2-doc cups-common
  libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
  libssl-dev freetype2-doc libglib2.0-doc libgdk-pixbuf2.0-bin
  | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user
  libice-doc icu-doc liblcms2-utils liblzma-doc libencode-hanextra-perl
  libpod2-base-perl ncurses-doc imagemagick libpango1.0-doc pcscd readline-doc
  lm-sensors libsm-doc libtool-doc gcj-jdk libx11-doc libxcb-doc libxext-doc
  libxt-doc m4-doc apparmor less www-browser mail-transport-agent inews
  openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra
  fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei
  | fonts-wqy-zenhei fonts-indic libmail-box-perl python-doc python-tk
  python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
  python3.7-venv python3.7-doc tcl-tclreadline tcl8.6-doc
  texlive-generic-recommended texinfo-doc-nonfree ghostscript gv
  | postscript-viewer perl-tk xpdf | pdf-viewer xzdec chktex dvidvi dvipng
  fragmaster lacheck latexdiff latexmk purifyeps xindy cm-super
  texlive-fonts-extra-doc texlive-fonts-recommended-doc texlive-latex-base-doc
  python-pygments icc-profiles libfile-which-perl
  libspreadsheet-parseexcel-perl texlive-latex-extra-doc
  texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
  ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex tk8.6-doc
Recommended packages:
  curl | wget | lynx bzip2-doc dbus libarchive-cpio-perl shared-mime-info
  xdg-user-dirs krb5-locales libgpm2 libpng-tools publicsuffix libltdl-dev
  libwww-perl libxml-sax-expat-perl libatk-wrapper-java-jni fonts-dejavu-extra
  libmail-sendmail-perl lmodern dvisvgm ghostscript libfile-homedir-perl
  liblog-log4perl-perl libyaml-tiny-perl ruby | ruby-interpreter
  fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius
  fonts-adf-universalis fonts-cabin fonts-comfortaa fonts-croscore
  fonts-crosextra-caladea fonts-crosextra-carlito fonts-ebgaramond
  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot
  fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go
  fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo
  fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-open-sans
  fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic
  fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix
  texlive-fonts-extra-links tex-gyre tipa tk xterm | x-terminal-emulator
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bison bsdmainutils
  ca-certificates ca-certificates-java debhelper default-jdk
  default-jdk-headless default-jre default-jre-headless dh-autoreconf
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-9
  gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  groff-base icu-devtools intltool-debian java-common libarchive-zip-perl
  libasound2 libasound2-data libavahi-client3 libavahi-common-data
  libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli1 libbsd0
  libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2
  libcairo2-dev libcroco3 libcups2 libcurl4 libcurl4-openssl-dev libdatrie1
  libdbus-1-3 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-etnaviv1
  libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1
  libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontconfig1
  libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libfribidi-dev
  libfribidi0 libgfortran-9-dev libgfortran5 libgif7 libgirepository-1.0-1
  libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0
  libglx0 libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu-dev libicu63 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libllvm8 liblzma-dev
  liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmount-dev libmpdec2
  libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnspr4 libnss3
  libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0
  libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng-dev libpng16-16 libpsl5 libptexenc1 libpthread-stubs0-dev
  libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib
  libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev
  librtmp1 libselinux1-dev libsensors-config libsensors5 libsepol1-dev
  libsigsegv2 libsm-dev libsm6 libsombok3 libssh2-1 libssl1.1
  libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53
  libtexluajit2 libtext-unidecode-perl libthai-data libthai0 libtiff-dev
  libtiff5 libtiff5-dev libtiffxx5 libtinfo5 libtk8.6 libtool libuchardet0
  libunicode-linebreak-perl libunwind8 libwebp6 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev
  libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6
  libxtst6 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack
  openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre
  openjdk-11-jre-headless openssl pango1.0-tools pkg-config po-debconf
  preview-latex-style python python-minimal python2 python2-minimal python2.7
  python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal
  python3.7 python3.7-minimal sbuild-build-depends-r-base-dummy sensible-utils
  t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev
  x11-common x11-xkb-utils x11proto-core-dev x11proto-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
0 upgraded, 302 newly installed, 0 to remove and 3 not upgraded.
Need to get 909 MB of archives.
After this operation, 2691 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZInSBF/apt_archive ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1124 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.16-4 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.16-4 [1090 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-2 [77.3 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.16-4 [1844 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.16-4 [305 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-4 [584 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.4-4 [1462 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-4 [1672 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-4 [340 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf tex-common all 6.12 [53.1 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf bash-completion all 1:2.8-6 [208 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf bison armhf 2:3.4.1+dfsg-4 [874 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1c-1 [804 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf java-common all 0.72 [14.5 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.7-4+b2 [122 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.7-4+b2 [51.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.16-1+b1 [189 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.7-4+b2 [54.1 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.0-3+rpi1 [305 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.9.1-4 [317 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libnspr4 armhf 2:4.21-2 [89.6 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libnss3 armhf 2:3.45-1 [957 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libasound2-data all 1.1.8-1 [59.6 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libasound2 armhf 1.1.8-1 [304 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpcsclite1 armhf 1.8.25-2 [55.7 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jre-headless armhf 11.0.5+6-2 [33.0 MB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf default-jre-headless armhf 2:1.11-72 [10.9 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.0-1 [14.3 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.6.1 [172 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.6.1 [993 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.1.0-1 [54.5 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.99-1+rpi1 [14.1 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.99-1+rpi1 [36.3 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 19.1.6-1 [74.7 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.8-1 [190 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.13.1-2 [99.1 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-1 [15.1 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.99-1+rpi1 [26.5 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libdrm-etnaviv1 armhf 2.4.99-1+rpi1 [20.0 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.99-1+rpi1 [24.5 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.99-1+rpi1 [28.7 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20190324-1 [78.9 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libllvm8 armhf 1:8.0.1~+rc4-1+rpi1 [12.1 MB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.5.0-3 [31.6 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.5.0-3 [49.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 19.1.6-1 [4557 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 19.1.6-1 [165 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.1.0-1 [24.6 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.1.0-1 [107 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jre armhf 11.0.5+6-2 [30.6 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf default-jre armhf 2:1.11-72 [1044 B]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jdk-headless armhf 11.0.5+6-2 [183 MB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf default-jdk-headless armhf 2:1.11-72 [1100 B]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jdk armhf 11.0.5+6-2 [2557 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf default-jdk armhf 2:1.11-72 [1056 B]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf fonts-lmodern all 2.004.5-6 [4539 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-8+rpi1 [231 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-8+rpi1 [278 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-8+rpi1 [7480 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3+rpi1 [1432 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libgirepository-1.0-1 armhf 1.58.3-2 [78.8 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf gir1.2-glib-2.0 armhf 1.58.3-2 [143 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf gir1.2-freedesktop armhf 1.58.3-2 [20.3 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-8 [70.5 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.1-3 [1271 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz-gobject0 armhf 2.6.1-3 [965 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.6.1-3 [973 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3 [36.1 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libpangoxft-1.0-0 armhf 1.42.4-7+b1 [47.4 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf gir1.2-pango-1.0 armhf 1.42.4-7+b1 [55.7 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.34-0.1 [92.5 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.34-0.1 [212 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-2 [269 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-2 [128 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.9.1-4 [479 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.13.1-2 [169 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.8-1 [760 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.13.1-2 [111 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.13.1-2 [100 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.2.1-9 [159 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.60.6-2 [1109 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.60.6-2 [120 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.60.6-2 [159 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.34-0.1 [212 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 2.9-2 [308 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 2.9-2 [157 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.60.6-2 [1404 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1 [296 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-openssl-dev armhf 7.66.0-1 [369 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf libfontenc1 armhf 1:1.1.3-1 [22.2 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf libfribidi-dev armhf 1.0.5-3.1 [99.2 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-dev armhf 1.3.13-8 [23.6 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz-icu0 armhf 2.6.1-3 [952 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz-dev armhf 2.6.1-3 [1379 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libjbig-dev armhf 2.1-3.1+b2 [27.7 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libkpathsea6 armhf 2019.20190605.51237-3 [159 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf libmime-charset-perl all 1.012.2-1 [35.4 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20190803-1 [281 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20190803-1 [940 B]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf libxft-dev armhf 2.3.2-2 [60.3 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf pango1.0-tools armhf 1.42.4-7+b1 [53.4 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf libpango1.0-dev armhf 1.42.4-7+b1 [139 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf libptexenc1 armhf 2019.20190605.51237-3 [60.0 kB]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-3 [114 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf libsombok3 armhf 2.4.0-2 [26.8 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf libsynctex2 armhf 2019.20190605.51237-3 [68.8 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf libteckit0 armhf 2.5.8+ds2-5 [245 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf libtexlua53 armhf 2019.20190605.51237-3 [99.7 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf libtexluajit2 armhf 2019.20190605.51237-3 [206 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf libtext-unidecode-perl all 1.30-1 [103 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.0.10+git190903-1 [240 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf libtiffxx5 armhf 4.0.10+git190903-1 [108 kB]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf libtiff-dev armhf 4.0.10+git190903-1 [353 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf libtiff5-dev armhf 4.0.10+git190903-1 [104 kB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf libunicode-linebreak-perl armhf 0.0.20190101-1 [98.3 kB]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf libunwind8 armhf 1.2.1-9 [48.3 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf libxfont2 armhf 1:2.0.3-1 [120 kB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf libxkbfile1 armhf 1:1.0.9-2 [65.4 kB]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf libxml-libxml-perl armhf 2.0134+dfsg-1 [322 kB]
Get:271 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:272 http://172.17.0.1/private bullseye-staging/main armhf x11proto-scrnsaver-dev all 2018.4-4 [3136 B]
Get:273 http://172.17.0.1/private bullseye-staging/main armhf libxss-dev armhf 1:1.2.3-1 [23.0 kB]
Get:274 http://172.17.0.1/private bullseye-staging/main armhf libxt-dev armhf 1:1.1.5-1 [390 kB]
Get:275 http://172.17.0.1/private bullseye-staging/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB]
Get:276 http://172.17.0.1/private bullseye-staging/main armhf mpack armhf 1.6-8.2 [31.2 kB]
Get:277 http://172.17.0.1/private bullseye-staging/main armhf preview-latex-style all 11.91-2 [201 kB]
Get:278 http://172.17.0.1/private bullseye-staging/main armhf t1utils armhf 1.41-3 [52.1 kB]
Get:279 http://172.17.0.1/private bullseye-staging/main armhf tcl8.6 armhf 8.6.9+dfsg-2 [123 kB]
Get:280 http://172.17.0.1/private bullseye-staging/main armhf tcl8.6-dev armhf 8.6.9+dfsg-2 [898 kB]
Get:281 http://172.17.0.1/private bullseye-staging/main armhf texinfo armhf 6.6.0.dfsg.1-2 [1140 kB]
Get:282 http://172.17.0.1/private bullseye-staging/main armhf texlive-binaries armhf 2019.20190605.51237-3 [5748 kB]
Get:283 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:284 http://172.17.0.1/private bullseye-staging/main armhf texlive-base all 2019.20190830-1 [20.6 MB]
Get:285 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-base all 2019.20190830-1 [989 kB]
Get:286 http://172.17.0.1/private bullseye-staging/main armhf texlive-extra-utils all 2019.20190830-1 [40.5 MB]
Get:287 http://172.17.0.1/private bullseye-staging/main armhf texlive-fonts-extra all 2019.20190830-1 [431 MB]
Get:288 http://172.17.0.1/private bullseye-staging/main armhf texlive-fonts-recommended all 2019.20190830-1 [5230 kB]
Get:289 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-recommended all 2019.20190830-1 [15.4 MB]
Get:290 http://172.17.0.1/private bullseye-staging/main armhf texlive-pictures all 2019.20190830-1 [10.9 MB]
Get:291 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-extra all 2019.20190830-1 [12.5 MB]
Get:292 http://172.17.0.1/private bullseye-staging/main armhf texlive-plain-generic all 2019.20190830-1 [24.3 MB]
Get:293 http://172.17.0.1/private bullseye-staging/main armhf tk8.6 armhf 8.6.9-2 [71.9 kB]
Get:294 http://172.17.0.1/private bullseye-staging/main armhf tk8.6-dev armhf 8.6.9-2 [680 kB]
Get:295 http://172.17.0.1/private bullseye-staging/main armhf x11-xkb-utils armhf 7.7+4 [138 kB]
Get:296 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:297 http://172.17.0.1/private bullseye-staging/main armhf xfonts-encodings all 1:1.0.4-2 [574 kB]
Get:298 http://172.17.0.1/private bullseye-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:299 http://172.17.0.1/private bullseye-staging/main armhf xfonts-base all 1:1.0.5 [5897 kB]
Get:300 http://172.17.0.1/private bullseye-staging/main armhf xkb-data all 2.26-2 [681 kB]
Get:301 http://172.17.0.1/private bullseye-staging/main armhf xserver-common all 2:1.20.4-1 [2235 kB]
Get:302 http://172.17.0.1/private bullseye-staging/main armhf xvfb armhf 2:1.20.4-1 [2837 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 909 MB in 5min 57s (2546 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12171 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.1+20190803-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20190803-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.8.7-3_armhf.deb ...
Unpacking man-db (2.8.7-3) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../07-libpython2.7-minimal_2.7.16-4_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.16-4) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../08-python2.7-minimal_2.7.16-4_armhf.deb ...
Unpacking python2.7-minimal (2.7.16-4) ...
Selecting previously unselected package python2-minimal.
Preparing to unpack .../09-python2-minimal_2.7.16-1_armhf.deb ...
Unpacking python2-minimal (2.7.16-1) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../10-python-minimal_2.7.16-1_armhf.deb ...
Unpacking python-minimal (2.7.16-1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../11-libssl1.1_1.1.1c-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1c-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../12-mime-support_3.63_all.deb ...
Unpacking mime-support (3.63) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../13-libexpat1_2.2.7-2_armhf.deb ...
Unpacking libexpat1:armhf (2.2.7-2) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../14-libpython2.7-stdlib_2.7.16-4_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.16-4) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../15-python2.7_2.7.16-4_armhf.deb ...
Unpacking python2.7 (2.7.16-4) ...
Selecting previously unselected package libpython2-stdlib:armhf.
Preparing to unpack .../16-libpython2-stdlib_2.7.16-1_armhf.deb ...
Unpacking libpython2-stdlib:armhf (2.7.16-1) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../17-libpython-stdlib_2.7.16-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.16-1) ...
Setting up libpython2.7-minimal:armhf (2.7.16-4) ...
Setting up python2.7-minimal (2.7.16-4) ...
Setting up python2-minimal (2.7.16-1) ...
Selecting previously unselected package python2.
(Reading database ... 13619 files and directories currently installed.)
Preparing to unpack .../python2_2.7.16-1_armhf.deb ...
Unpacking python2 (2.7.16-1) ...
Setting up python-minimal (2.7.16-1) ...
Selecting previously unselected package python.
(Reading database ... 13652 files and directories currently installed.)
Preparing to unpack .../python_2.7.16-1_armhf.deb ...
Unpacking python (2.7.16-1) ...
Selecting previously unselected package libpython3.7-minimal:armhf.
Preparing to unpack .../libpython3.7-minimal_3.7.4-4_armhf.deb ...
Unpacking libpython3.7-minimal:armhf (3.7.4-4) ...
Selecting previously unselected package python3.7-minimal.
Preparing to unpack .../python3.7-minimal_3.7.4-4_armhf.deb ...
Unpacking python3.7-minimal (3.7.4-4) ...
Setting up libssl1.1:armhf (1.1.1c-1) ...
Setting up libpython3.7-minimal:armhf (3.7.4-4) ...
Setting up libexpat1:armhf (2.2.7-2) ...
Setting up python3.7-minimal (3.7.4-4) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13906 files and directories currently installed.)
Preparing to unpack .../python3-minimal_3.7.3-1_armhf.deb ...
Unpacking python3-minimal (3.7.3-1) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../libmpdec2_2.4.2-2_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-2) ...
Selecting previously unselected package libpython3.7-stdlib:armhf.
Preparing to unpack .../libpython3.7-stdlib_3.7.4-4_armhf.deb ...
Unpacking libpython3.7-stdlib:armhf (3.7.4-4) ...
Selecting previously unselected package python3.7.
Preparing to unpack .../python3.7_3.7.4-4_armhf.deb ...
Unpacking python3.7 (3.7.4-4) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.7.3-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.7.3-1) ...
Setting up python3-minimal (3.7.3-1) ...
Selecting previously unselected package python3.
(Reading database ... 14319 files and directories currently installed.)
Preparing to unpack .../000-python3_3.7.3-1_armhf.deb ...
Unpacking python3 (3.7.3-1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package ucf.
Preparing to unpack .../002-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../003-tex-common_6.12_all.deb ...
Unpacking tex-common (6.12) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../004-bash-completion_1%3a2.8-6_all.deb ...
Unpacking bash-completion (1:2.8-6) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.37-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.37-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../006-libmagic1_1%3a5.37-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.37-5) ...
Selecting previously unselected package file.
Preparing to unpack .../007-file_1%3a5.37-5_armhf.deb ...
Unpacking file (1:5.37-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../008-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../009-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../010-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../011-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../012-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../013-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../014-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package bison.
Preparing to unpack .../015-bison_2%3a3.4.1+dfsg-4_armhf.deb ...
Unpacking bison (2:3.4.1+dfsg-4) ...
Selecting previously unselected package openssl.
Preparing to unpack .../016-openssl_1.1.1c-1_armhf.deb ...
Unpacking openssl (1.1.1c-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../017-ca-certificates_20190110_all.deb ...
Unpacking ca-certificates (20190110) ...
Selecting previously unselected package java-common.
Preparing to unpack .../018-java-common_0.72_all.deb ...
Unpacking java-common (0.72) ...
Selecting previously unselected package libavahi-common-data:armhf.
Preparing to unpack .../019-libavahi-common-data_0.7-4+b2_armhf.deb ...
Unpacking libavahi-common-data:armhf (0.7-4+b2) ...
Selecting previously unselected package libavahi-common3:armhf.
Preparing to unpack .../020-libavahi-common3_0.7-4+b2_armhf.deb ...
Unpacking libavahi-common3:armhf (0.7-4+b2) ...
Selecting previously unselected package libdbus-1-3:armhf.
Preparing to unpack .../021-libdbus-1-3_1.12.16-1+b1_armhf.deb ...
Unpacking libdbus-1-3:armhf (1.12.16-1+b1) ...
Selecting previously unselected package libavahi-client3:armhf.
Preparing to unpack .../022-libavahi-client3_0.7-4+b2_armhf.deb ...
Unpacking libavahi-client3:armhf (0.7-4+b2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../023-libkeyutils1_1.6-6_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6-6) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../024-libkrb5support0_1.17-6+b1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../025-libk5crypto3_1.17-6+b1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-6+b1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../026-libkrb5-3_1.17-6+b1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../027-libgssapi-krb5-2_1.17-6+b1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../028-libcups2_2.3.0-3+rpi1_armhf.deb ...
Unpacking libcups2:armhf (2.3.0-3+rpi1) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../029-liblcms2-2_2.9-3_armhf.deb ...
Unpacking liblcms2-2:armhf (2.9-3) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../030-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../031-libpng16-16_1.6.37-1_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-1) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../032-libfreetype6_2.9.1-4_armhf.deb ...
Unpacking libfreetype6:armhf (2.9.1-4) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../033-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../034-fontconfig-config_2.13.1-2_all.deb ...
Unpacking fontconfig-config (2.13.1-2) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../035-libfontconfig1_2.13.1-2_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-2) ...
Selecting previously unselected package libnspr4:armhf.
Preparing to unpack .../036-libnspr4_2%3a4.21-2_armhf.deb ...
Unpacking libnspr4:armhf (2:4.21-2) ...
Selecting previously unselected package libnss3:armhf.
Preparing to unpack .../037-libnss3_2%3a3.45-1_armhf.deb ...
Unpacking libnss3:armhf (2:3.45-1) ...
Selecting previously unselected package libasound2-data.
Preparing to unpack .../038-libasound2-data_1.1.8-1_all.deb ...
Unpacking libasound2-data (1.1.8-1) ...
Selecting previously unselected package libasound2:armhf.
Preparing to unpack .../039-libasound2_1.1.8-1_armhf.deb ...
Unpacking libasound2:armhf (1.1.8-1) ...
Selecting previously unselected package libpcsclite1:armhf.
Preparing to unpack .../040-libpcsclite1_1.8.25-2_armhf.deb ...
Unpacking libpcsclite1:armhf (1.8.25-2) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../041-libxau6_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../042-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../043-libxcb1_1.13.1-2_armhf.deb ...
Unpacking libxcb1:armhf (1.13.1-2) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../044-libx11-data_2%3a1.6.8-1_all.deb ...
Unpacking libx11-data (2:1.6.8-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../045-libx11-6_2%3a1.6.8-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.8-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../046-libxext6_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../047-libxi6_2%3a1.7.9-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.7.9-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../048-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../049-x11-common_1%3a7.7+19_all.deb ...
Unpacking x11-common (1:7.7+19) ...
Selecting previously unselected package libxtst6:armhf.
Preparing to unpack .../050-libxtst6_2%3a1.2.3-1_armhf.deb ...
Unpacking libxtst6:armhf (2:1.2.3-1) ...
Selecting previously unselected package openjdk-11-jre-headless:armhf.
Preparing to unpack .../051-openjdk-11-jre-headless_11.0.5+6-2_armhf.deb ...
Unpacking openjdk-11-jre-headless:armhf (11.0.5+6-2) ...
Selecting previously unselected package default-jre-headless.
Preparing to unpack .../052-default-jre-headless_2%3a1.11-72_armhf.deb ...
Unpacking default-jre-headless (2:1.11-72) ...
Selecting previously unselected package ca-certificates-java.
Preparing to unpack .../053-ca-certificates-java_20190909_all.deb ...
Unpacking ca-certificates-java (20190909) ...
Selecting previously unselected package libtool.
Preparing to unpack .../054-libtool_2.4.6-11_all.deb ...
Unpacking libtool (2.4.6-11) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../055-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../056-libarchive-zip-perl_1.65-1_all.deb ...
Unpacking libarchive-zip-perl (1.65-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../057-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../058-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../059-dh-strip-nondeterminism_1.6.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../060-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../061-dwz_0.13-1_armhf.deb ...
Unpacking dwz (0.13-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../062-libdebhelper-perl_12.6.1_all.deb ...
Unpacking libdebhelper-perl (12.6.1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../063-libglib2.0-0_2.60.6-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.60.6-2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../064-libicu63_63.2-2_armhf.deb ...
Unpacking libicu63:armhf (63.2-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../065-libxml2_2.9.4+dfsg1-7+b2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../066-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../067-libncurses6_6.1+20190803-1_armhf.deb ...
Unpacking libncurses6:armhf (6.1+20190803-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../068-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../069-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../070-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../071-debhelper_12.6.1_all.deb ...
Unpacking debhelper (12.6.1) ...
Selecting previously unselected package libglvnd0:armhf.
Preparing to unpack .../072-libglvnd0_1.1.0-1_armhf.deb ...
Unpacking libglvnd0:armhf (1.1.0-1) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../073-libdrm-common_2.4.99-1+rpi1_all.deb ...
Unpacking libdrm-common (2.4.99-1+rpi1) ...
Selecting previously unselected package libdrm2:armhf.
Preparing to unpack .../074-libdrm2_2.4.99-1+rpi1_armhf.deb ...
Unpacking libdrm2:armhf (2.4.99-1+rpi1) ...
Selecting previously unselected package libglapi-mesa:armhf.
Preparing to unpack .../075-libglapi-mesa_19.1.6-1_armhf.deb ...
Unpacking libglapi-mesa:armhf (19.1.6-1) ...
Selecting previously unselected package libx11-xcb1:armhf.
Preparing to unpack .../076-libx11-xcb1_2%3a1.6.8-1_armhf.deb ...
Unpacking libx11-xcb1:armhf (2:1.6.8-1) ...
Selecting previously unselected package libxcb-dri2-0:armhf.
Preparing to unpack .../077-libxcb-dri2-0_1.13.1-2_armhf.deb ...
Unpacking libxcb-dri2-0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-dri3-0:armhf.
Preparing to unpack .../078-libxcb-dri3-0_1.13.1-2_armhf.deb ...
Unpacking libxcb-dri3-0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-glx0:armhf.
Preparing to unpack .../079-libxcb-glx0_1.13.1-2_armhf.deb ...
Unpacking libxcb-glx0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-present0:armhf.
Preparing to unpack .../080-libxcb-present0_1.13.1-2_armhf.deb ...
Unpacking libxcb-present0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-sync1:armhf.
Preparing to unpack .../081-libxcb-sync1_1.13.1-2_armhf.deb ...
Unpacking libxcb-sync1:armhf (1.13.1-2) ...
Selecting previously unselected package libxfixes3:armhf.
Preparing to unpack .../082-libxfixes3_1%3a5.0.3-1_armhf.deb ...
Unpacking libxfixes3:armhf (1:5.0.3-1) ...
Selecting previously unselected package libxdamage1:armhf.
Preparing to unpack .../083-libxdamage1_1%3a1.1.5-1_armhf.deb ...
Unpacking libxdamage1:armhf (1:1.1.5-1) ...
Selecting previously unselected package libxshmfence1:armhf.
Preparing to unpack .../084-libxshmfence1_1.3-1_armhf.deb ...
Unpacking libxshmfence1:armhf (1.3-1) ...
Selecting previously unselected package libxxf86vm1:armhf.
Preparing to unpack .../085-libxxf86vm1_1%3a1.1.4-1+b2_armhf.deb ...
Unpacking libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Selecting previously unselected package libdrm-amdgpu1:armhf.
Preparing to unpack .../086-libdrm-amdgpu1_2.4.99-1+rpi1_armhf.deb ...
Unpacking libdrm-amdgpu1:armhf (2.4.99-1+rpi1) ...
Selecting previously unselected package libdrm-etnaviv1:armhf.
Preparing to unpack .../087-libdrm-etnaviv1_2.4.99-1+rpi1_armhf.deb ...
Unpacking libdrm-etnaviv1:armhf (2.4.99-1+rpi1) ...
Selecting previously unselected package libdrm-nouveau2:armhf.
Preparing to unpack .../088-libdrm-nouveau2_2.4.99-1+rpi1_armhf.deb ...
Unpacking libdrm-nouveau2:armhf (2.4.99-1+rpi1) ...
Selecting previously unselected package libdrm-radeon1:armhf.
Preparing to unpack .../089-libdrm-radeon1_2.4.99-1+rpi1_armhf.deb ...
Unpacking libdrm-radeon1:armhf (2.4.99-1+rpi1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../090-libedit2_3.1-20190324-1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20190324-1) ...
Selecting previously unselected package libllvm8:armhf.
Preparing to unpack .../091-libllvm8_1%3a8.0.1~+rc4-1+rpi1_armhf.deb ...
Unpacking libllvm8:armhf (1:8.0.1~+rc4-1+rpi1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../092-libsensors-config_1%3a3.5.0-3_all.deb ...
Unpacking libsensors-config (1:3.5.0-3) ...
Selecting previously unselected package libsensors5:armhf.
Preparing to unpack .../093-libsensors5_1%3a3.5.0-3_armhf.deb ...
Unpacking libsensors5:armhf (1:3.5.0-3) ...
Selecting previously unselected package libgl1-mesa-dri:armhf.
Preparing to unpack .../094-libgl1-mesa-dri_19.1.6-1_armhf.deb ...
Unpacking libgl1-mesa-dri:armhf (19.1.6-1) ...
Selecting previously unselected package libglx-mesa0:armhf.
Preparing to unpack .../095-libglx-mesa0_19.1.6-1_armhf.deb ...
Unpacking libglx-mesa0:armhf (19.1.6-1) ...
Selecting previously unselected package libglx0:armhf.
Preparing to unpack .../096-libglx0_1.1.0-1_armhf.deb ...
Unpacking libglx0:armhf (1.1.0-1) ...
Selecting previously unselected package libgl1:armhf.
Preparing to unpack .../097-libgl1_1.1.0-1_armhf.deb ...
Unpacking libgl1:armhf (1.1.0-1) ...
Selecting previously unselected package libgif7:armhf.
Preparing to unpack .../098-libgif7_5.1.4-3_armhf.deb ...
Unpacking libgif7:armhf (5.1.4-3) ...
Selecting previously unselected package openjdk-11-jre:armhf.
Preparing to unpack .../099-openjdk-11-jre_11.0.5+6-2_armhf.deb ...
Unpacking openjdk-11-jre:armhf (11.0.5+6-2) ...
Selecting previously unselected package default-jre.
Preparing to unpack .../100-default-jre_2%3a1.11-72_armhf.deb ...
Unpacking default-jre (2:1.11-72) ...
Selecting previously unselected package openjdk-11-jdk-headless:armhf.
Preparing to unpack .../101-openjdk-11-jdk-headless_11.0.5+6-2_armhf.deb ...
Unpacking openjdk-11-jdk-headless:armhf (11.0.5+6-2) ...
Selecting previously unselected package default-jdk-headless.
Preparing to unpack .../102-default-jdk-headless_2%3a1.11-72_armhf.deb ...
Unpacking default-jdk-headless (2:1.11-72) ...
Selecting previously unselected package openjdk-11-jdk:armhf.
Preparing to unpack .../103-openjdk-11-jdk_11.0.5+6-2_armhf.deb ...
Unpacking openjdk-11-jdk:armhf (11.0.5+6-2) ...
Selecting previously unselected package default-jdk.
Preparing to unpack .../104-default-jdk_2%3a1.11-72_armhf.deb ...
Unpacking default-jdk (2:1.11-72) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../105-fontconfig_2.13.1-2_armhf.deb ...
Unpacking fontconfig (2.13.1-2) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../106-fonts-lmodern_2.004.5-6_all.deb ...
Unpacking fonts-lmodern (2.004.5-6) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../107-libgfortran5_9.2.1-8+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (9.2.1-8+rpi1) ...
Selecting previously unselected package libgfortran-9-dev:armhf.
Preparing to unpack .../108-libgfortran-9-dev_9.2.1-8+rpi1_armhf.deb ...
Unpacking libgfortran-9-dev:armhf (9.2.1-8+rpi1) ...
Selecting previously unselected package gfortran-9.
Preparing to unpack .../109-gfortran-9_9.2.1-8+rpi1_armhf.deb ...
Unpacking gfortran-9 (9.2.1-8+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../110-gfortran_4%3a9.2.1-3+rpi1_armhf.deb ...
Unpacking gfortran (4:9.2.1-3+rpi1) ...
Selecting previously unselected package libgirepository-1.0-1:armhf.
Preparing to unpack .../111-libgirepository-1.0-1_1.58.3-2_armhf.deb ...
Unpacking libgirepository-1.0-1:armhf (1.58.3-2) ...
Selecting previously unselected package gir1.2-glib-2.0:armhf.
Preparing to unpack .../112-gir1.2-glib-2.0_1.58.3-2_armhf.deb ...
Unpacking gir1.2-glib-2.0:armhf (1.58.3-2) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../113-libpixman-1-0_0.36.0-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.36.0-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../114-libxcb-render0_1.13.1-2_armhf.deb ...
Unpacking libxcb-render0:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../115-libxcb-shm0_1.13.1-2_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.13.1-2) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../116-libcairo2_1.16.0-4_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-4) ...
Selecting previously unselected package libcairo-gobject2:armhf.
Preparing to unpack .../117-libcairo-gobject2_1.16.0-4_armhf.deb ...
Unpacking libcairo-gobject2:armhf (1.16.0-4) ...
Selecting previously unselected package gir1.2-freedesktop:armhf.
Preparing to unpack .../118-gir1.2-freedesktop_1.58.3-2_armhf.deb ...
Unpacking gir1.2-freedesktop:armhf (1.58.3-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../119-libgraphite2-3_1.3.13-8_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.13-8) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../120-libharfbuzz0b_2.6.1-3_armhf.deb ...
Unpacking libharfbuzz0b:armhf (2.6.1-3) ...
Selecting previously unselected package libharfbuzz-gobject0:armhf.
Preparing to unpack .../121-libharfbuzz-gobject0_2.6.1-3_armhf.deb ...
Unpacking libharfbuzz-gobject0:armhf (2.6.1-3) ...
Selecting previously unselected package gir1.2-harfbuzz-0.0:armhf.
Preparing to unpack .../122-gir1.2-harfbuzz-0.0_2.6.1-3_armhf.deb ...
Unpacking gir1.2-harfbuzz-0.0:armhf (2.6.1-3) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../123-libfribidi0_1.0.5-3.1_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.5-3.1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../124-libthai-data_0.1.28-3_all.deb ...
Unpacking libthai-data (0.1.28-3) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../125-libdatrie1_0.2.12-3_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.12-3) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../126-libthai0_0.1.28-3_armhf.deb ...
Unpacking libthai0:armhf (0.1.28-3) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../127-libpango-1.0-0_1.42.4-7+b1_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.42.4-7+b1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../128-libpangoft2-1.0-0_1.42.4-7+b1_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../129-libpangocairo-1.0-0_1.42.4-7+b1_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../130-libxft2_2.3.2-2_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-2) ...
Selecting previously unselected package libpangoxft-1.0-0:armhf.
Preparing to unpack .../131-libpangoxft-1.0-0_1.42.4-7+b1_armhf.deb ...
Unpacking libpangoxft-1.0-0:armhf (1.42.4-7+b1) ...
Selecting previously unselected package gir1.2-pango-1.0:armhf.
Preparing to unpack .../132-gir1.2-pango-1.0_1.42.4-7+b1_armhf.deb ...
Unpacking gir1.2-pango-1.0:armhf (1.42.4-7+b1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../133-icu-devtools_63.2-2_armhf.deb ...
Unpacking icu-devtools (63.2-2) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../134-libblas3_3.8.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.8.0-2) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../135-libblas-dev_3.8.0-2_armhf.deb ...
Unpacking libblas-dev:armhf (3.8.0-2) ...
Selecting previously unselected package uuid-dev:armhf.
Preparing to unpack .../136-uuid-dev_2.34-0.1_armhf.deb ...
Unpacking uuid-dev:armhf (2.34-0.1) ...
Selecting previously unselected package libblkid-dev:armhf.
Preparing to unpack .../137-libblkid-dev_2.34-0.1_armhf.deb ...
Unpacking libblkid-dev:armhf (2.34-0.1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../138-libbrotli1_1.0.7-2_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-2) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../139-libbz2-dev_1.0.8-2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-2) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../140-liblzo2-2_2.10-0.1_armhf.deb ...
Unpacking liblzo2-2:armhf (2.10-0.1) ...
Selecting previously unselected package libcairo-script-interpreter2:armhf.
Preparing to unpack .../141-libcairo-script-interpreter2_1.16.0-4_armhf.deb ...
Unpacking libcairo-script-interpreter2:armhf (1.16.0-4) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../142-libexpat1-dev_2.2.7-2_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.7-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../143-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../144-libpng-dev_1.6.37-1_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.37-1) ...
Selecting previously unselected package libfreetype6-dev:armhf.
Preparing to unpack .../145-libfreetype6-dev_2.9.1-4_armhf.deb ...
Unpacking libfreetype6-dev:armhf (2.9.1-4) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../146-pkg-config_0.29-6_armhf.deb ...
Unpacking pkg-config (0.29-6) ...
Selecting previously unselected package libfontconfig1-dev:armhf.
Preparing to unpack .../147-libfontconfig1-dev_2.13.1-2_armhf.deb ...
Unpacking libfontconfig1-dev:armhf (2.13.1-2) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../148-xorg-sgml-doctools_1%3a1.11-1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../149-x11proto-dev_2018.4-4_all.deb ...
Unpacking x11proto-dev (2018.4-4) ...
Selecting previously unselected package x11proto-core-dev.
Preparing to unpack .../150-x11proto-core-dev_2018.4-4_all.deb ...
Unpacking x11proto-core-dev (2018.4-4) ...
Selecting previously unselected package libxau-dev:armhf.
Preparing to unpack .../151-libxau-dev_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau-dev:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp-dev:armhf.
Preparing to unpack .../152-libxdmcp-dev_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp-dev:armhf (1:1.1.2-3) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../153-xtrans-dev_1.3.5-1_all.deb ...
Unpacking xtrans-dev (1.3.5-1) ...
Selecting previously unselected package libpthread-stubs0-dev:armhf.
Preparing to unpack .../154-libpthread-stubs0-dev_0.4-1_armhf.deb ...
Unpacking libpthread-stubs0-dev:armhf (0.4-1) ...
Selecting previously unselected package libxcb1-dev:armhf.
Preparing to unpack .../155-libxcb1-dev_1.13.1-2_armhf.deb ...
Unpacking libxcb1-dev:armhf (1.13.1-2) ...
Selecting previously unselected package libx11-dev:armhf.
Preparing to unpack .../156-libx11-dev_2%3a1.6.8-1_armhf.deb ...
Unpacking libx11-dev:armhf (2:1.6.8-1) ...
Selecting previously unselected package libxrender-dev:armhf.
Preparing to unpack .../157-libxrender-dev_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender-dev:armhf (1:0.9.10-1) ...
Selecting previously unselected package x11proto-xext-dev.
Preparing to unpack .../158-x11proto-xext-dev_2018.4-4_all.deb ...
Unpacking x11proto-xext-dev (2018.4-4) ...
Selecting previously unselected package libxext-dev:armhf.
Preparing to unpack .../159-libxext-dev_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext-dev:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../160-libice6_2%3a1.0.9-2_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-2) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../161-libsm6_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.3-1) ...
Selecting previously unselected package libice-dev:armhf.
Preparing to unpack .../162-libice-dev_2%3a1.0.9-2_armhf.deb ...
Unpacking libice-dev:armhf (2:1.0.9-2) ...
Selecting previously unselected package libsm-dev:armhf.
Preparing to unpack .../163-libsm-dev_2%3a1.2.3-1_armhf.deb ...
Unpacking libsm-dev:armhf (2:1.2.3-1) ...
Selecting previously unselected package libpixman-1-dev:armhf.
Preparing to unpack .../164-libpixman-1-dev_0.36.0-1_armhf.deb ...
Unpacking libpixman-1-dev:armhf (0.36.0-1) ...
Selecting previously unselected package libxcb-render0-dev:armhf.
Preparing to unpack .../165-libxcb-render0-dev_1.13.1-2_armhf.deb ...
Unpacking libxcb-render0-dev:armhf (1.13.1-2) ...
Selecting previously unselected package libxcb-shm0-dev:armhf.
Preparing to unpack .../166-libxcb-shm0-dev_1.13.1-2_armhf.deb ...
Unpacking libxcb-shm0-dev:armhf (1.13.1-2) ...
Selecting previously unselected package libffi-dev:armhf.
Preparing to unpack .../167-libffi-dev_3.2.1-9_armhf.deb ...
Unpacking libffi-dev:armhf (3.2.1-9) ...
Selecting previously unselected package libglib2.0-data.
Preparing to unpack .../168-libglib2.0-data_2.60.6-2_all.deb ...
Unpacking libglib2.0-data (2.60.6-2) ...
Selecting previously unselected package libglib2.0-bin.
Preparing to unpack .../169-libglib2.0-bin_2.60.6-2_armhf.deb ...
Unpacking libglib2.0-bin (2.60.6-2) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../170-python3-lib2to3_3.7.4-3_all.deb ...
Unpacking python3-lib2to3 (3.7.4-3) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../171-python3-distutils_3.7.4-3_all.deb ...
Unpacking python3-distutils (3.7.4-3) ...
Selecting previously unselected package libglib2.0-dev-bin.
Preparing to unpack .../172-libglib2.0-dev-bin_2.60.6-2_armhf.deb ...
Unpacking libglib2.0-dev-bin (2.60.6-2) ...
Selecting previously unselected package libmount-dev:armhf.
Preparing to unpack .../173-libmount-dev_2.34-0.1_armhf.deb ...
Unpacking libmount-dev:armhf (2.34-0.1) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../174-libpcre16-3_2%3a8.39-12_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-12) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../175-libpcre32-3_2%3a8.39-12_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-12) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../176-libpcrecpp0v5_2%3a8.39-12_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-12) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../177-libpcre3-dev_2%3a8.39-12_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-12) ...
Selecting previously unselected package libsepol1-dev:armhf.
Preparing to unpack .../178-libsepol1-dev_2.9-2_armhf.deb ...
Unpacking libsepol1-dev:armhf (2.9-2) ...
Selecting previously unselected package libpcre2-16-0:armhf.
Preparing to unpack .../179-libpcre2-16-0_10.32-5_armhf.deb ...
Unpacking libpcre2-16-0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-32-0:armhf.
Preparing to unpack .../180-libpcre2-32-0_10.32-5_armhf.deb ...
Unpacking libpcre2-32-0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-posix0:armhf.
Preparing to unpack .../181-libpcre2-posix0_10.32-5_armhf.deb ...
Unpacking libpcre2-posix0:armhf (10.32-5) ...
Selecting previously unselected package libpcre2-dev:armhf.
Preparing to unpack .../182-libpcre2-dev_10.32-5_armhf.deb ...
Unpacking libpcre2-dev:armhf (10.32-5) ...
Selecting previously unselected package libselinux1-dev:armhf.
Preparing to unpack .../183-libselinux1-dev_2.9-2_armhf.deb ...
Unpacking libselinux1-dev:armhf (2.9-2) ...
Selecting previously unselected package libglib2.0-dev:armhf.
Preparing to unpack .../184-libglib2.0-dev_2.60.6-2_armhf.deb ...
Unpacking libglib2.0-dev:armhf (2.60.6-2) ...
Selecting previously unselected package libcairo2-dev:armhf.
Preparing to unpack .../185-libcairo2-dev_1.16.0-4_armhf.deb ...
Unpacking libcairo2-dev:armhf (1.16.0-4) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../186-libnghttp2-14_1.39.2-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.39.2-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../187-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../188-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../189-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../190-libcurl4_7.66.0-1_armhf.deb ...
Unpacking libcurl4:armhf (7.66.0-1) ...
Selecting previously unselected package libcurl4-openssl-dev:armhf.
Preparing to unpack .../191-libcurl4-openssl-dev_7.66.0-1_armhf.deb ...
Unpacking libcurl4-openssl-dev:armhf (7.66.0-1) ...
Selecting previously unselected package libfontenc1:armhf.
Preparing to unpack .../192-libfontenc1_1%3a1.1.3-1_armhf.deb ...
Unpacking libfontenc1:armhf (1:1.1.3-1) ...
Selecting previously unselected package libfribidi-dev:armhf.
Preparing to unpack .../193-libfribidi-dev_1.0.5-3.1_armhf.deb ...
Unpacking libfribidi-dev:armhf (1.0.5-3.1) ...
Selecting previously unselected package libgraphite2-dev:armhf.
Preparing to unpack .../194-libgraphite2-dev_1.3.13-8_armhf.deb ...
Unpacking libgraphite2-dev:armhf (1.3.13-8) ...
Selecting previously unselected package libharfbuzz-icu0:armhf.
Preparing to unpack .../195-libharfbuzz-icu0_2.6.1-3_armhf.deb ...
Unpacking libharfbuzz-icu0:armhf (2.6.1-3) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../196-libicu-dev_63.2-2_armhf.deb ...
Unpacking libicu-dev:armhf (63.2-2) ...
Selecting previously unselected package libharfbuzz-dev:armhf.
Preparing to unpack .../197-libharfbuzz-dev_2.6.1-3_armhf.deb ...
Unpacking libharfbuzz-dev:armhf (2.6.1-3) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../198-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libjbig-dev:armhf.
Preparing to unpack .../199-libjbig-dev_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig-dev:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../200-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../201-libjpeg-dev_1%3a1.5.2-2_all.deb ...
Unpacking libjpeg-dev (1:1.5.2-2) ...
Selecting previously unselected package libkpathsea6:armhf.
Preparing to unpack .../202-libkpathsea6_2019.20190605.51237-3_armhf.deb ...
Unpacking libkpathsea6:armhf (2019.20190605.51237-3) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../203-liblapack3_3.8.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.8.0-2) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../204-liblapack-dev_3.8.0-2_armhf.deb ...
Unpacking liblapack-dev:armhf (3.8.0-2) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../205-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package libmime-charset-perl.
Preparing to unpack .../206-libmime-charset-perl_1.012.2-1_all.deb ...
Unpacking libmime-charset-perl (1.012.2-1) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../207-libncurses-dev_6.1+20190803-1_armhf.deb ...
Unpacking libncurses-dev:armhf (6.1+20190803-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../208-libncurses5-dev_6.1+20190803-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.1+20190803-1) ...
Selecting previously unselected package libxft-dev:armhf.
Preparing to unpack .../209-libxft-dev_2.3.2-2_armhf.deb ...
Unpacking libxft-dev:armhf (2.3.2-2) ...
Selecting previously unselected package pango1.0-tools.
Preparing to unpack .../210-pango1.0-tools_1.42.4-7+b1_armhf.deb ...
Unpacking pango1.0-tools (1.42.4-7+b1) ...
Selecting previously unselected package libpango1.0-dev:armhf.
Preparing to unpack .../211-libpango1.0-dev_1.42.4-7+b1_armhf.deb ...
Unpacking libpango1.0-dev:armhf (1.42.4-7+b1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../212-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../213-libpaper-utils_1.1.28_armhf.deb ...
Unpacking libpaper-utils (1.1.28) ...
Selecting previously unselected package libptexenc1:armhf.
Preparing to unpack .../214-libptexenc1_2019.20190605.51237-3_armhf.deb ...
Unpacking libptexenc1:armhf (2019.20190605.51237-3) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../215-libreadline-dev_8.0-3_armhf.deb ...
Unpacking libreadline-dev:armhf (8.0-3) ...
Selecting previously unselected package libsombok3:armhf.
Preparing to unpack .../216-libsombok3_2.4.0-2_armhf.deb ...
Unpacking libsombok3:armhf (2.4.0-2) ...
Selecting previously unselected package libsynctex2:armhf.
Preparing to unpack .../217-libsynctex2_2019.20190605.51237-3_armhf.deb ...
Unpacking libsynctex2:armhf (2019.20190605.51237-3) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../218-libtcl8.6_8.6.9+dfsg-2_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.9+dfsg-2) ...
Selecting previously unselected package libteckit0:armhf.
Preparing to unpack .../219-libteckit0_2.5.8+ds2-5_armhf.deb ...
Unpacking libteckit0:armhf (2.5.8+ds2-5) ...
Selecting previously unselected package libtexlua53:armhf.
Preparing to unpack .../220-libtexlua53_2019.20190605.51237-3_armhf.deb ...
Unpacking libtexlua53:armhf (2019.20190605.51237-3) ...
Selecting previously unselected package libtexluajit2:armhf.
Preparing to unpack .../221-libtexluajit2_2019.20190605.51237-3_armhf.deb ...
Unpacking libtexluajit2:armhf (2019.20190605.51237-3) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../222-libtext-unidecode-perl_1.30-1_all.deb ...
Unpacking libtext-unidecode-perl (1.30-1) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../223-libwebp6_0.6.1-2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../224-libtiff5_4.0.10+git190903-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.10+git190903-1) ...
Selecting previously unselected package libtiffxx5:armhf.
Preparing to unpack .../225-libtiffxx5_4.0.10+git190903-1_armhf.deb ...
Unpacking libtiffxx5:armhf (4.0.10+git190903-1) ...
Selecting previously unselected package libtiff-dev:armhf.
Preparing to unpack .../226-libtiff-dev_4.0.10+git190903-1_armhf.deb ...
Unpacking libtiff-dev:armhf (4.0.10+git190903-1) ...
Selecting previously unselected package libtiff5-dev.
Preparing to unpack .../227-libtiff5-dev_4.0.10+git190903-1_armhf.deb ...
Unpacking libtiff5-dev (4.0.10+git190903-1) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../228-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../229-libtk8.6_8.6.9-2_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.9-2) ...
Selecting previously unselected package libunicode-linebreak-perl.
Preparing to unpack .../230-libunicode-linebreak-perl_0.0.20190101-1_armhf.deb ...
Unpacking libunicode-linebreak-perl (0.0.20190101-1) ...
Selecting previously unselected package libunwind8:armhf.
Preparing to unpack .../231-libunwind8_1.2.1-9_armhf.deb ...
Unpacking libunwind8:armhf (1.2.1-9) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../232-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../233-libxmu6_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.2-2) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../234-libxpm4_1%3a3.5.12-1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.12-1) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../235-libxaw7_2%3a1.0.13-1_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.13-1) ...
Selecting previously unselected package libxfont2:armhf.
Preparing to unpack .../236-libxfont2_1%3a2.0.3-1_armhf.deb ...
Unpacking libxfont2:armhf (1:2.0.3-1) ...
Selecting previously unselected package libxkbfile1:armhf.
Preparing to unpack .../237-libxkbfile1_1%3a1.0.9-2_armhf.deb ...
Unpacking libxkbfile1:armhf (1:1.0.9-2) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../238-libxml-namespacesupport-perl_1.12-1_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-1) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../239-libxml-sax-base-perl_1.09-1_all.deb ...
Unpacking libxml-sax-base-perl (1.09-1) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../240-libxml-sax-perl_1.02+dfsg-1_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-1) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../241-libxml-libxml-perl_2.0134+dfsg-1_armhf.deb ...
Unpacking libxml-libxml-perl (2.0134+dfsg-1) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../242-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package x11proto-scrnsaver-dev.
Preparing to unpack .../243-x11proto-scrnsaver-dev_2018.4-4_all.deb ...
Unpacking x11proto-scrnsaver-dev (2018.4-4) ...
Selecting previously unselected package libxss-dev:armhf.
Preparing to unpack .../244-libxss-dev_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss-dev:armhf (1:1.2.3-1) ...
Selecting previously unselected package libxt-dev:armhf.
Preparing to unpack .../245-libxt-dev_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt-dev:armhf (1:1.1.5-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../246-libzzip-0-13_0.13.62-3.2_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.62-3.2) ...
Selecting previously unselected package mpack.
Preparing to unpack .../247-mpack_1.6-8.2_armhf.deb ...
Unpacking mpack (1.6-8.2) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../248-preview-latex-style_11.91-2_all.deb ...
Unpacking preview-latex-style (11.91-2) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../249-t1utils_1.41-3_armhf.deb ...
Unpacking t1utils (1.41-3) ...
Selecting previously unselected package tcl8.6.
Preparing to unpack .../250-tcl8.6_8.6.9+dfsg-2_armhf.deb ...
Unpacking tcl8.6 (8.6.9+dfsg-2) ...
Selecting previously unselected package tcl8.6-dev:armhf.
Preparing to unpack .../251-tcl8.6-dev_8.6.9+dfsg-2_armhf.deb ...
Unpacking tcl8.6-dev:armhf (8.6.9+dfsg-2) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../252-texinfo_6.6.0.dfsg.1-2_armhf.deb ...
Unpacking texinfo (6.6.0.dfsg.1-2) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../253-texlive-binaries_2019.20190605.51237-3_armhf.deb ...
Unpacking texlive-binaries (2019.20190605.51237-3) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../254-xdg-utils_1.1.3-1_all.deb ...
Unpacking xdg-utils (1.1.3-1) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../255-texlive-base_2019.20190830-1_all.deb ...
Unpacking texlive-base (2019.20190830-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../256-texlive-latex-base_2019.20190830-1_all.deb ...
Unpacking texlive-latex-base (2019.20190830-1) ...
Selecting previously unselected package texlive-extra-utils.
Preparing to unpack .../257-texlive-extra-utils_2019.20190830-1_all.deb ...
Unpacking texlive-extra-utils (2019.20190830-1) ...
Selecting previously unselected package texlive-fonts-extra.
Preparing to unpack .../258-texlive-fonts-extra_2019.20190830-1_all.deb ...
Unpacking texlive-fonts-extra (2019.20190830-1) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../259-texlive-fonts-recommended_2019.20190830-1_all.deb ...
Unpacking texlive-fonts-recommended (2019.20190830-1) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../260-texlive-latex-recommended_2019.20190830-1_all.deb ...
Unpacking texlive-latex-recommended (2019.20190830-1) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../261-texlive-pictures_2019.20190830-1_all.deb ...
Unpacking texlive-pictures (2019.20190830-1) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../262-texlive-latex-extra_2019.20190830-1_all.deb ...
Unpacking texlive-latex-extra (2019.20190830-1) ...
Selecting previously unselected package texlive-plain-generic.
Preparing to unpack .../263-texlive-plain-generic_2019.20190830-1_all.deb ...
Unpacking texlive-plain-generic (2019.20190830-1) ...
Selecting previously unselected package tk8.6.
Preparing to unpack .../264-tk8.6_8.6.9-2_armhf.deb ...
Unpacking tk8.6 (8.6.9-2) ...
Selecting previously unselected package tk8.6-dev:armhf.
Preparing to unpack .../265-tk8.6-dev_8.6.9-2_armhf.deb ...
Unpacking tk8.6-dev:armhf (8.6.9-2) ...
Selecting previously unselected package x11-xkb-utils.
Preparing to unpack .../266-x11-xkb-utils_7.7+4_armhf.deb ...
Unpacking x11-xkb-utils (7.7+4) ...
Selecting previously unselected package xauth.
Preparing to unpack .../267-xauth_1%3a1.0.10-1_armhf.deb ...
Unpacking xauth (1:1.0.10-1) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../268-xfonts-encodings_1%3a1.0.4-2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../269-xfonts-utils_1%3a7.7+6_armhf.deb ...
Unpacking xfonts-utils (1:7.7+6) ...
Selecting previously unselected package xfonts-base.
Preparing to unpack .../270-xfonts-base_1%3a1.0.5_all.deb ...
Unpacking xfonts-base (1:1.0.5) ...
Selecting previously unselected package xkb-data.
Preparing to unpack .../271-xkb-data_2.26-2_all.deb ...
Unpacking xkb-data (2.26-2) ...
Selecting previously unselected package xserver-common.
Preparing to unpack .../272-xserver-common_2%3a1.20.4-1_all.deb ...
Unpacking xserver-common (2:1.20.4-1) ...
Selecting previously unselected package xvfb.
Preparing to unpack .../273-xvfb_2%3a1.20.4-1_armhf.deb ...
Unpacking xvfb (2:1.20.4-1) ...
Selecting previously unselected package sbuild-build-depends-r-base-dummy.
Preparing to unpack .../274-sbuild-build-depends-r-base-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Setting up libpcrecpp0v5:armhf (2:8.39-12) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libgraphite2-3:armhf (1.3.13-8) ...
Setting up liblcms2-2:armhf (2.9-3) ...
Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libx11-xcb1:armhf (2:1.6.8-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libpixman-1-dev:armhf (0.36.0-1) ...
Setting up mime-support (3.63) ...
Setting up libpcre16-3:armhf (2:8.39-12) ...
Setting up java-common (0.72) ...
Setting up libdatrie1:armhf (0.2.12-3) ...
Setting up libmagic-mgc (1:5.37-5) ...
Setting up mpack (1.6-8.2) ...
Setting up libtexlua53:armhf (2019.20190605.51237-3) ...
Setting up libarchive-zip-perl (1.65-1) ...
Setting up libglib2.0-0:armhf (2.60.6-2) ...
No schema files found: doing nothing.
Setting up libglvnd0:armhf (1.1.0-1) ...
Setting up libtexluajit2:armhf (2019.20190605.51237-3) ...
Setting up libdebhelper-perl (12.6.1) ...
Setting up libbrotli1:armhf (1.0.7-2) ...
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libsensors-config (1:3.5.0-3) ...
Setting up libnghttp2-14:armhf (1.39.2-1) ...
Setting up libmagic1:armhf (1:5.37-5) ...
Setting up libsepol1-dev:armhf (2.9-2) ...
Setting up libxml-namespacesupport-perl (1.12-1) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up xkb-data (2.26-2) ...
Setting up liblzo2-2:armhf (2.10-0.1) ...
Setting up libzzip-0-13:armhf (0.13.62-3.2) ...
Setting up file (1:5.37-5) ...
Setting up libffi-dev:armhf (3.2.1-9) ...
Setting up libunwind8:armhf (1.2.1-9) ...
Setting up libpthread-stubs0-dev:armhf (0.4-1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.32-5) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libpython2.7-stdlib:armhf (2.7.16-4) ...
Setting up libasound2-data (1.1.8-1) ...
Setting up libxml-sax-base-perl (1.09-1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libgraphite2-dev:armhf (1.3.13-8) ...
Setting up libfontenc1:armhf (1:1.1.3-1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libpcre2-32-0:armhf (10.32-5) ...
Setting up libglib2.0-data (2.60.6-2) ...
Setting up libexpat1-dev:armhf (2.2.7-2) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libpcre2-posix0:armhf (10.32-5) ...
Setting up libx11-data (2:1.6.8-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up libnspr4:armhf (2:4.21-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libteckit0:armhf (2.5.8+ds2-5) ...
Setting up bash-completion (1:2.8-6) ...
Setting up uuid-dev:armhf (2.34-0.1) ...
Setting up libavahi-common-data:armhf (0.7-4+b2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libdbus-1-3:armhf (1.12.16-1+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up xfonts-encodings (1:1.0.4-2) ...
Setting up libfribidi0:armhf (1.0.5-3.1) ...
Setting up t1utils (1.41-3) ...
Setting up libpng16-16:armhf (1.6.37-1) ...
Setting up libpcre32-3:armhf (2:8.39-12) ...
Setting up libtcl8.6:armhf (8.6.9+dfsg-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up icu-devtools (63.2-2) ...
Setting up pkg-config (0.29-6) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpcsclite1:armhf (1.8.25-2) ...
Setting up libsensors5:armhf (1:3.5.0-3) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libglapi-mesa:armhf (19.1.6-1) ...
Setting up libkpathsea6:armhf (2019.20190605.51237-3) ...
Setting up libgfortran5:armhf (9.2.1-8+rpi1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up libgif7:armhf (5.1.4-3) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libxshmfence1:armhf (1.3-1) ...
Setting up libmime-charset-perl (1.012.2-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libasound2:armhf (1.1.8-1) ...
Setting up fonts-lmodern (2.004.5-6) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libgirepository-1.0-1:armhf (1.58.3-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libtiff5:armhf (4.0.10+git190903-1) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libtext-unidecode-perl (1.30-1) ...
Setting up openssl (1.1.1c-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libdrm-common (2.4.99-1+rpi1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (63.2-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up xdg-utils (1.1.3-1) ...
Setting up libsynctex2:armhf (2019.20190605.51237-3) ...
Setting up libtiffxx5:armhf (4.0.10+git190903-1) ...
Setting up libbz2-dev:armhf (1.0.8-2) ...
Setting up x11proto-dev (2018.4-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.0-1) ...
Setting up libblkid-dev:armhf (2.34-0.1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libpython3.7-stdlib:armhf (3.7.4-4) ...
Setting up tcl8.6 (8.6.9+dfsg-2) ...
Setting up libncurses-dev:armhf (6.1+20190803-1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libxau-dev:armhf (1:1.0.8-1+b2) ...
Setting up libpcre2-dev:armhf (10.32-5) ...
Setting up python2.7 (2.7.16-4) ...
Setting up libice-dev:armhf (2:1.0.9-2) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython2-stdlib:armhf (2.7.16-1) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up libselinux1-dev:armhf (2.9-2) ...
Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up libfribidi-dev:armhf (1.0.5-3.1) ...
Setting up libxcb-glx0:armhf (1.13.1-2) ...
Setting up tcl8.6-dev:armhf (8.6.9+dfsg-2) ...
Setting up libedit2:armhf (3.1-20190324-1) ...
Setting up libpng-dev:armhf (1.6.37-1) ...
Setting up libavahi-common3:armhf (0.7-4+b2) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libjbig-dev:armhf (2.1-3.1+b2) ...
Setting up libgfortran-9-dev:armhf (9.2.1-8+rpi1) ...
Setting up libglib2.0-bin (2.60.6-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libnss3:armhf (2:3.45-1) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libreadline-dev:armhf (8.0-3) ...
Setting up python2 (2.7.16-1) ...
Setting up libxcb-present0:armhf (1.13.1-2) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libpython-stdlib:armhf (2.7.16-1) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libptexenc1:armhf (2019.20190605.51237-3) ...
Setting up libfreetype6:armhf (2.9.1-4) ...
Setting up libtiff-dev:armhf (4.0.10+git190903-1) ...
Setting up libxcb-sync1:armhf (1.13.1-2) ...
Setting up x11proto-core-dev (2018.4-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up gir1.2-glib-2.0:armhf (1.58.3-2) ...
Setting up autoconf (2.69-11) ...
Setting up libxcb-dri2-0:armhf (1.13.1-2) ...
Setting up x11proto-xext-dev (2018.4-4) ...
Setting up libdrm2:armhf (2.4.99-1+rpi1) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libncurses5-dev:armhf (6.1+20190803-1) ...
Setting up bison (2:3.4.1+dfsg-4) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libcurl4:armhf (7.66.0-1) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libharfbuzz0b:armhf (2.6.1-3) ...
Setting up libxkbfile1:armhf (1:1.0.9-2) ...
Setting up x11proto-scrnsaver-dev (2018.4-4) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up python (2.7.16-1) ...
Setting up libxfont2:armhf (1:2.0.3-1) ...
Setting up libavahi-client3:armhf (0.7-4+b2) ...
Setting up libmount-dev:armhf (2.34-0.1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libpython3-stdlib:armhf (3.7.3-1) ...
Setting up libdrm-amdgpu1:armhf (2.4.99-1+rpi1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libllvm8:armhf (1:8.0.1~+rc4-1+rpi1) ...
Setting up libxcb-dri3-0:armhf (1.13.1-2) ...
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up python3.7 (3.7.4-4) ...
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libdrm-nouveau2:armhf (2.4.99-1+rpi1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libharfbuzz-icu0:armhf (2.6.1-3) ...
Setting up libdrm-etnaviv1:armhf (2.4.99-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.13.1-2) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up gfortran-9 (9.2.1-8+rpi1) ...
Setting up libsombok3:armhf (2.4.0-2) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.99-1+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libgl1-mesa-dri:armhf (19.1.6-1) ...
Setting up libx11-dev:armhf (2:1.6.8-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libtiff5-dev (4.0.10+git190903-1) ...
Setting up python3 (3.7.3-1) ...
Setting up libharfbuzz-gobject0:armhf (2.6.1-3) ...
Setting up libpaper-utils (1.1.28) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gir1.2-harfbuzz-0.0:armhf (2.6.1-3) ...
Setting up gfortran (4:9.2.1-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfreetype6-dev:armhf (2.9.1-4) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up tex-common (6.12) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:armhf (1.13.1-2) ...
Setting up xfonts-base (1:1.0.5) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up libcurl4-openssl-dev:armhf (7.66.0-1) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1) ...
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxcb-render0-dev:armhf (1.13.1-2) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcups2:armhf (2.3.0-3+rpi1) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up python3-lib2to3 (3.7.4-3) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up python3-distutils (3.7.4-3) ...
Setting up libglib2.0-dev-bin (2.60.6-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libxmu6:armhf (2:1.1.2-2) ...
Setting up libfontconfig1-dev:armhf (2.13.1-2) ...
Setting up libxdamage1:armhf (1:1.1.5-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up libxtst6:armhf (2:1.2.3-1) ...
Setting up po-debconf (1.0.21) ...
Setting up preview-latex-style (11.91-2) ...
Setting up libtk8.6:armhf (8.6.9-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libxaw7:armhf (2:1.0.13-1) ...
Setting up libxss-dev:armhf (1:1.2.3-1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libglib2.0-dev:armhf (2.60.6-2) ...
Setting up libxt-dev:armhf (1:1.1.5-1) ...
Setting up texinfo (6.6.0.dfsg.1-2) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2019.20190605.51237-3) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libcairo-gobject2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up texlive-base (2019.20190830-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libxft-dev:armhf (2.3.2-2) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-4) ...
Setting up tk8.6 (8.6.9-2) ...
Setting up libharfbuzz-dev:armhf (2.6.1-3) ...
Setting up gir1.2-freedesktop:armhf (1.58.3-2) ...
Setting up libglx-mesa0:armhf (19.1.6-1) ...
Setting up libpangoxft-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libglx0:armhf (1.1.0-1) ...
Setting up x11-xkb-utils (7.7+4) ...
Setting up pango1.0-tools (1.42.4-7+b1) ...
Setting up texlive-plain-generic (2019.20190830-1) ...
Setting up gir1.2-pango-1.0:armhf (1.42.4-7+b1) ...
Setting up libgl1:armhf (1.1.0-1) ...
Setting up texlive-latex-base (2019.20190830-1) ...
Setting up texlive-extra-utils (2019.20190830-1) ...
Setting up texlive-fonts-extra (2019.20190830-1) ...
Setting up texlive-latex-recommended (2019.20190830-1) ...
Setting up texlive-pictures (2019.20190830-1) ...
Setting up tk8.6-dev:armhf (8.6.9-2) ...
Setting up texlive-fonts-recommended (2019.20190830-1) ...
Setting up libcairo2-dev:armhf (1.16.0-4) ...
Setting up xserver-common (2:1.20.4-1) ...
Setting up xvfb (2:1.20.4-1) ...
Setting up texlive-latex-extra (2019.20190830-1) ...
Setting up libpango1.0-dev:armhf (1.42.4-7+b1) ...
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
done.
Setting up default-jre-headless (2:1.11-72) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.0-1) ...
Setting up debhelper (12.6.1) ...
Processing triggers for libc-bin (2.29-1+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
Setting up openjdk-11-jre-headless:armhf (11.0.5+6-2) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jre:armhf (11.0.5+6-2) ...
Setting up openjdk-11-jdk-headless:armhf (11.0.5+6-2) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-72) ...
Setting up default-jdk-headless (2:1.11-72) ...
Setting up openjdk-11-jdk:armhf (11.0.5+6-2) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk (2:1.11-72) ...
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for tex-common (6.12) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-1+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 bash-completion_1:2.8-6 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bison_2:3.4.1+dfsg-4 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 ca-certificates-java_20190909 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debianutils_4.9 default-jdk_2:1.11-72 default-jdk-headless_2:1.11-72 default-jre_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-6 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-13+rpi1+b1 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:9.2.1-3+rpi1 gfortran-9_9.2.1-8+rpi1 gir1.2-freedesktop_1.58.3-2 gir1.2-glib-2.0_1.58.3-2 gir1.2-harfbuzz-0.0_2.6.1-3 gir1.2-pango-1.0_1.42.4-7+b1 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.22 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 java-common_0.72 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.65-1 libasan5_9.2.1-8+rpi1 libasound2_1.1.8-1 libasound2-data_1.1.8-1 libassuan0_2.5.3-7 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libavahi-client3_0.7-4+b2 libavahi-common-data_0.7-4+b2 libavahi-common3_0.7-4+b2 libbinutils_2.32.51.20190909-1+rpi1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid-dev_2.34-0.1 libblkid1_2.34-0.1 libbrotli1_1.0.7-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-1+rpi1 libc-dev-bin_2.29-1+rpi1 libc6_2.29-1+rpi1 libc6-dev_2.29-1+rpi1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.3-4 libcroco3_0.6.13-1 libcups2_2.3.0-3+rpi1 libcurl4_7.66.0-1 libcurl4-openssl-dev_7.66.0-1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.16-1+b1 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdpkg-perl_1.19.7 libdrm-amdgpu1_2.4.99-1+rpi1 libdrm-common_2.4.99-1+rpi1 libdrm-etnaviv1_2.4.99-1+rpi1 libdrm-nouveau2_2.4.99-1+rpi1 libdrm-radeon1_2.4.99-1+rpi1 libdrm2_2.4.99-1+rpi1 libedit2_3.1-20190324-1 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.45.3-4 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi-dev_3.2.1-9 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfontenc1_1:1.1.3-1 libfreetype6_2.9.1-4 libfreetype6-dev_2.9.1-4 libfribidi-dev_1.0.5-3.1 libfribidi0_1.0.5-3.1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-8+rpi1 libgfortran5_9.2.1-8+rpi1 libgif7_5.1.4-3 libgirepository-1.0-1_1.58.3-2 libgl1_1.1.0-1 libgl1-mesa-dri_19.1.6-1 libglapi-mesa_19.1.6-1 libglib2.0-0_2.60.6-2 libglib2.0-bin_2.60.6-2 libglib2.0-data_2.60.6-2 libglib2.0-dev_2.60.6-2 libglib2.0-dev-bin_2.60.6-2 libglvnd0_1.1.0-1 libglx-mesa0_19.1.6-1 libglx0_1.1.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-8 libgraphite2-dev_1.3.13-8 libgssapi-krb5-2_1.17-6+b1 libharfbuzz-dev_2.6.1-3 libharfbuzz-gobject0_2.6.1-3 libharfbuzz-icu0_2.6.1-3 libharfbuzz0b_2.6.1-3 libhogweed4_3.4.1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libjbig-dev_2.1-3.1+b2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkpathsea6_2019.20190605.51237-3 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 liblcms2-2_2.9-3 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 libllvm8_1:8.0.1~+rc4-1+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmime-charset-perl_1.012.2-1 libmount-dev_2.34-0.1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses-dev_6.1+20190803-1 libncurses5-dev_6.1+20190803-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libnspr4_2:4.21-2 libnss3_2:3.45-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-7+b1 libpango1.0-dev_1.42.4-7+b1 libpangocairo-1.0-0_1.42.4-7+b1 libpangoft2-1.0-0_1.42.4-7+b1 libpangoxft-1.0-0_1.42.4-7+b1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libpcsclite1_1.8.25-2 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libpsl5_0.20.2-2 libptexenc1_2019.20190605.51237-3 libpthread-stubs0-dev_0.4-1 libpython-stdlib_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7-minimal_2.7.16-4 libpython2.7-stdlib_2.7.16-4 libpython3-stdlib_3.7.3-1 libpython3.7-minimal_3.7.4-4 libpython3.7-stdlib_3.7.4-4 libreadline-dev_8.0-3 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libselinux1-dev_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsensors-config_1:3.5.0-3 libsensors5_1:3.5.0-3 libsepol1_2.9-2 libsepol1-dev_2.9-2 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsombok3_2.4.0-2 libsqlite3-0_3.29.0-2 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsynctex2_2019.20190605.51237-3 libsystemd0_242-7+rpi1 libtasn1-6_4.14-2 libtcl8.6_8.6.9+dfsg-2 libteckit0_2.5.8+ds2-5 libtexlua53_2019.20190605.51237-3 libtexluajit2_2019.20190605.51237-3 libtext-charwidth-perl_0.04-8 libtext-iconv-perl_1.7-6 libtext-unidecode-perl_1.30-1 libtext-wrapi18n-perl_0.06-8 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff-dev_4.0.10+git190903-1 libtiff5_4.0.10+git190903-1 libtiff5-dev_4.0.10+git190903-1 libtiffxx5_4.0.10+git190903-1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtk8.6_8.6.9-2 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunicode-linebreak-perl_0.0.20190101-1 libunistring2_0.9.10-2 libunwind8_1.2.1-9 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libx11-dev_2:1.6.8-1 libx11-xcb1_2:1.6.8-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-shm0-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage1_1:1.1.5-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxfont2_1:2.0.3-1 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxi6_2:1.7.9-1 libxkbfile1_1:1.0.9-2 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml2_2.9.4+dfsg1-7+b2 libxmu6_2:1.1.2-2 libxmuu1_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxss-dev_1:1.2.3-1 libxss1_1:1.2.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxtst6_2:1.2.3-1 libxxf86vm1_1:1.1.4-1+b2 libzstd1_1.4.3+dfsg-1+rpi1 libzzip-0-13_0.13.62-3.2 linux-libc-dev_4.18.20-2+rpi1+b1 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mime-support_3.63 mount_2.34-0.1 mpack_1.6-8.2 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 openjdk-11-jdk_11.0.5+6-2 openjdk-11-jdk-headless_11.0.5+6-2 openjdk-11-jre_11.0.5+6-2 openjdk-11-jre-headless_11.0.5+6-2 openssl_1.1.1c-1 pango1.0-tools_1.42.4-7+b1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 preview-latex-style_11.91-2 python_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-4 python2.7-minimal_2.7.16-4 python3_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3.7_3.7.4-4 python3.7-minimal_3.7.4-4 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 t1utils_1.41-3 tar_1.30+dfsg-6 tcl8.6_8.6.9+dfsg-2 tcl8.6-dev_8.6.9+dfsg-2 tex-common_6.12 texinfo_6.6.0.dfsg.1-2 texlive-base_2019.20190830-1 texlive-binaries_2019.20190605.51237-3 texlive-extra-utils_2019.20190830-1 texlive-fonts-extra_2019.20190830-1 texlive-fonts-recommended_2019.20190830-1 texlive-latex-base_2019.20190830-1 texlive-latex-extra_2019.20190830-1 texlive-latex-recommended_2019.20190830-1 texlive-pictures_2019.20190830-1 texlive-plain-generic_2019.20190830-1 tk8.6_8.6.9-2 tk8.6-dev_8.6.9-2 tzdata_2019c-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 uuid-dev_2.34-0.1 x11-common_1:7.7+19 x11-xkb-utils_7.7+4 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-scrnsaver-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xfonts-base_1:1.0.5 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+6 xkb-data_2.26-2 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.20.4-1 xtrans-dev_1.3.5-1 xvfb_2:1.20.4-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 20 03:14:55 2019 UTC
gpgv:                using RSA key A1489FE2AB99A21A
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-base_3.6.1-5.dsc
dpkg-source: info: extracting r-base in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-base_3.6.1.orig.tar.gz
dpkg-source: info: unpacking r-base_3.6.1-5.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a0c10930-01d6-4496-9ca8-06d8bf2eb42a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c93951

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 3.6.1-5
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash				\
        mkdir_p="/bin/mkdir -p"                         \
MKDIR_P="/bin/mkdir -p"                         \
R_TEXI2DVICMD=emulation				\
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
R_BZIPCMD=/bin/bzip2				\
R_GZIPCMD="/bin/gzip -n"			\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
TAR=/bin/tar					\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
DD=/bin/dd					\
GREP=/bin/grep					\
FGREP="/bin/grep -F"				\
EGREP="/bin/grep -E"				\
SED=/bin/sed					\
GETWD="/bin/pwd"				\
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build arm-linux-gnueabihf
configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking how to run the C preprocessor... gcc -std=gnu99 -E
looking for a modern Fortran compiler
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_callback_sigcleanup exists and is declared... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking size of long double... 8
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
./configure: line 20192: ::: command not found
checking if need -fno-optimize-sibling-calls for gfortran... yes
checking for xmkmf... no
checking whether g++  supports C++98 features with -std=gnu++98... yes
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking for g++ -std=gnu++11 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking thread.h usability... no
checking thread.h presence... no
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_... no
checking for sgemm_ in -lopenblas... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking mmap support for zlib... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes
checking if PCRE version >= 8.32... yes
checking whether PCRE support suffices... yes
checking pcre2.h usability... yes
checking pcre2.h presence... yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.66.0
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking if libcurl is version 7 and >= 7.22.0... yes
checking if libcurl supports https... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.4.1, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:            .
  Installation directory:      /usr

  C compiler:                  gcc -std=gnu99  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong

  Default C++ compiler:        g++ -std=gnu++11  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  C++98 compiler:              g++ -std=gnu++98  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  C++11 compiler:              g++ -std=gnu++11  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  C++14 compiler:              g++ -std=gnu++14  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  C++17 compiler:              g++ -std=gnu++17  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
  Fortran free-form compiler:  gfortran -fno-optimize-sibling-calls -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
  Obj-C compiler:	        

  Interfaces supported:        X11, tcltk
  External libraries:          readline, BLAS(generic), LAPACK(generic), curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling

  Capabilities skipped:        
  Options not enabled:         shared BLAS

  Recommended packages:        no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R_GZIPCMD="/bin/gzip -n"		\
		R
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dposl.f -o dposl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altclasses.c -o altclasses.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altrep.c -o altrep.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
In file included from /usr/include/string.h:494,
                 from ../../src/include/Rinlinedfuns.h:73,
                 from ../../src/include/Rinternals.h:1550,
                 from ../../src/include/Defn.h:81,
                 from eval.c:27:
In function 'strncpy',
    inlined from 'inflateAssignmentCall' at eval.c:6083:5,
    inlined from 'R_getBCInterpreterExpression' at eval.c:6136:8:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eval.c: In function 'R_getBCInterpreterExpression':
eval.c:6076:19: note: length computed here
 6076 |     size_t slen = strlen(name);
      |                   ^~~~~~~~~~~~
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c radixsort.c -o radixsort.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gfortran -fno-optimize-sibling-calls -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -lblas -lgfortran -lm   -lreadline  -lpcre2-8 -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n  
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/bin/exec
mkdir -p -- /<<PKGBUILDDIR>>/lib
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99 -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR  
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/modules
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -L"../../../lib" -Wl,-z,relro -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm 
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c loessf.f -o loessf.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c ppr.f -o ppr.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sgram.f -o sgram.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c hclust.f -o hclust.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c kmns.f -o kmns.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c eureka.f -o eureka.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c portsrc.f -o portsrc.o
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H   -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		R_GZIPCMD="/bin/gzip -n"		\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
Copying source files
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
R_GZIPCMD="/bin/gzip -n" \
	/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
you should 'make docs' now ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
installing parsed Rd
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
writing package indices
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/make javaconf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version     : 11.0.5-ea
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: 
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.0TLfUD'
gcc -std=gnu99 -I"/<<PKGBUILDDIR>>/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux    -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/<<PKGBUILDDIR>>/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/<<PKGBUILDDIR>>/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.0TLfUD'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /<<PKGBUILDDIR>>
Done.

make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
touch make-arch-stamp
*** make-indep ***
/usr/bin/make -k docs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[4]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
installing parsed Rd
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
writing package indices
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd doc/manual && /usr/bin/make html)
make[1]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/make info
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd doc/manual && \
	/usr/bin/make refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \
		R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf)
make[1]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ...........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX ...............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
No file refman.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224]
No file refman.ind.
(./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2227 pages, 5563625 bytes).
Transcript written on refman.log.
This is makeindex, version 2.15 [TeX Live 2019] (kpathsea + Thai support).
Scanning input file refman.idx.................done (13921 entries accepted, 34 rejected).
Sorting entries..................................................................................................................................................done (213790 comparisons).
Generating output file refman.ind................done (13715 lines written, 56 warnings).
Output written in refman.ind.
Transcript written in refman.ilg.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(./refman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex
Chapter 1.
[1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224] (./refman.ind [2225] [2226] [2227] [2228]
[2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239]
[2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250]
[2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261]
[2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271] [2272]
[2273] [2274]
Overfull \hbox (33.3567pt too wide) in paragraph at lines 8854--8856
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

[2275] [2276] [2277] [2278] [2279] [2280]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 10177--10179
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11923--11925
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11925--11927
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11927--11929
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297]) (./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2328 pages, 6258028 bytes).
Transcript written on refman.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(./refman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex
Chapter 1.
[1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224] (./refman.ind [2225] [2226] [2227] [2228]
[2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239]
[2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250]
[2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261]
[2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271] [2272]
[2273] [2274]
Overfull \hbox (33.3567pt too wide) in paragraph at lines 8854--8856
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

[2275] [2276] [2277] [2278] [2279] [2280]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 10177--10179
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11923--11925
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11925--11927
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11927--11929
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297]) (./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2328 pages, 6258116 bytes).
Transcript written on refman.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
@setfilename R-admin.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16]
[17] [18] [19] [20] [21] Chapter 4 [22] [23]
Underfull \hbox (badness 10000) in paragraph at lines 1962--1974
@texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@
textrm , @texttt org.r-project.x86_
[24] Chapter 5 [25] Chapter 6 [26]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2113--2113
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[27] [28]
Underfull \hbox (badness 6842) in paragraph at lines 2307--2318
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[29] [30] [31] [32] [33] [34]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2767--2767
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 2787--2787
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2788--2788
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[35] Chapter 7 [36] [37] [38] Chapter 8 [39] Chapter 9 [40] [41] [42] [43]
Appendix A [44] [45]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3421--3421
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[46] [47] [48] [49]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3692--3692
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.191-1.b12.fc28.x86_6
4/jre[] 
[50] [51] [52] [53] [54] [55] Appendix B [56] [57] [58] [59] [60] [61]
Appendix C [62] [63] [64] [65] [66] [67]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5036--5036
 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m
acOS_10.14.pkg \[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 5044--5044
 []@texttt CPPFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.
sdk/usr/include"[] 
[68]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5146--5146
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig \[] 
[69]
Overfull \hbox (106.92076pt too wide) in paragraph at lines 5183--5183
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 5217--5217
 []@texttt --enable-memory-profiling --enable-R-framework --x-libraries=/opt/X1
1/lib[] 
[70]
Underfull \hbox (badness 10000) in paragraph at lines 5322--5327
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[71]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 5346--5346
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_191.jdk/Content
s/Home[] 
[72] [73]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5515--5515
 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/
csw/lib"[] 
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5626
@texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca
l/lib/sparcv9[] @textrm as

Overfull \hbox (141.41289pt too wide) in paragraph at lines 5628--5628
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5635--5635
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[75]
Underfull \hbox (badness 10000) in paragraph at lines 5685--5689
[]@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/
local/lib/amd64[] @textrm and
[76] Appendix D [77] [78] [79] (Function and variable index) [80]
No file R-admin.vrs.
(Concept index) [81]
No file R-admin.cps.
(Environment variable index) [82]
No file R-admin.ens.
[83] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (86 pages, 477763 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
Chapter 3 [15] [16] [17] [18] [19] [20] [21] Chapter 4 [22] [23]
Underfull \hbox (badness 10000) in paragraph at lines 1962--1974
@texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@
textrm , @texttt org.r-project.x86_
[24] Chapter 5 [25] Chapter 6 [26]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2113--2113
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[27] [28]
Underfull \hbox (badness 6842) in paragraph at lines 2307--2318
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[29] [30] [31] [32] [33] [34]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2767--2767
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 2787--2787
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2788--2788
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[35] Chapter 7 [36] [37] [38] Chapter 8 [39] Chapter 9 [40] [41] [42] [43]
Appendix A [44] [45]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3421--3421
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[46] [47] [48] [49]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3692--3692
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.191-1.b12.fc28.x86_6
4/jre[] 
[50] [51] [52] [53] [54] [55] Appendix B [56] [57] [58] [59] [60] [61]
Appendix C [62] [63] [64] [65] [66] [67]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5036--5036
 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m
acOS_10.14.pkg \[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 5044--5044
 []@texttt CPPFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.
sdk/usr/include"[] 
[68]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5146--5146
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig \[] 
[69]
Overfull \hbox (106.92076pt too wide) in paragraph at lines 5183--5183
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 5217--5217
 []@texttt --enable-memory-profiling --enable-R-framework --x-libraries=/opt/X1
1/lib[] 
[70]
Underfull \hbox (badness 10000) in paragraph at lines 5322--5327
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[71]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 5346--5346
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_191.jdk/Content
s/Home[] 
[72] [73]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5515--5515
 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/
csw/lib"[] 
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5626
@texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca
l/lib/sparcv9[] @textrm as

Overfull \hbox (141.41289pt too wide) in paragraph at lines 5628--5628
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5635--5635
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[75]
Underfull \hbox (badness 10000) in paragraph at lines 5685--5689
[]@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/
local/lib/amd64[] @textrm and
[76] Appendix D [77] [78] [79] (Function and variable index) [80]
(Concept index) [81] (Environment variable index) [82] [83] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt9.pfb>
Output written on R-admin.pdf (88 pages, 522645 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-admin.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
Chapter 3 [15] [16] [17] [18] [19] [20] [21] Chapter 4 [22] [23]
Underfull \hbox (badness 10000) in paragraph at lines 1962--1974
@texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@
textrm , @texttt org.r-project.x86_
[24] Chapter 5 [25] Chapter 6 [26]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2113--2113
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[27] [28]
Underfull \hbox (badness 6842) in paragraph at lines 2307--2318
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[29] [30] [31] [32] [33] [34]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2767--2767
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 2787--2787
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2788--2788
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[35] Chapter 7 [36] [37] [38] Chapter 8 [39] Chapter 9 [40] [41] [42] [43]
Appendix A [44] [45]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3421--3421
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[46] [47] [48] [49]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3692--3692
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.191-1.b12.fc28.x86_6
4/jre[] 
[50] [51] [52] [53] [54] [55] Appendix B [56] [57] [58] [59] [60] [61]
Appendix C [62] [63] [64] [65] [66] [67]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5036--5036
 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m
acOS_10.14.pkg \[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 5044--5044
 []@texttt CPPFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.
sdk/usr/include"[] 
[68]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 5146--5146
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig \[] 
[69]
Overfull \hbox (106.92076pt too wide) in paragraph at lines 5183--5183
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 5217--5217
 []@texttt --enable-memory-profiling --enable-R-framework --x-libraries=/opt/X1
1/lib[] 
[70]
Underfull \hbox (badness 10000) in paragraph at lines 5322--5327
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[71]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 5346--5346
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_191.jdk/Content
s/Home[] 
[72] [73]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5515--5515
 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/
csw/lib"[] 
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5626
@texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca
l/lib/sparcv9[] @textrm as

Overfull \hbox (141.41289pt too wide) in paragraph at lines 5628--5628
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5635--5635
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[75]
Underfull \hbox (badness 10000) in paragraph at lines 5685--5689
[]@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/
local/lib/amd64[] @textrm and
[76] Appendix D [77] [78] [79] (Function and variable index) [80]
(Concept index) [81] (Environment variable index) [82] [83] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt9.pfb>
Output written on R-admin.pdf (88 pages, 522703 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
@setfilename R-data.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements)
Underfull \hbox (badness 10000) in paragraph at lines 87--87
 [][]@textbf DBI

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87
 @texttt package=DBI[]@textrm )[][]| 

Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88
 [][]@textbf dataframes2xls

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt org /

Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88
 @texttt package=dataframes2xls[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 [][]@textbf foreign

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89
 @texttt package=foreign[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 [][]@textbf gdata

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90
 @texttt package=gdata[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 [][]@textbf ncdf4

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91
 @texttt package=ncdf4[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 [][]@textbf rJava

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92
 @texttt package=rJava[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 [][]@textbf RJDBC

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93
 @texttt package=RJDBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 [][]@textbf RMySQL

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt org /

Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94
 @texttt package=RMySQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 [][]@textbf RNetCDF

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95
 @texttt package=RNetCDF[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 [][]@textbf RODBC

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96
 @texttt package=RODBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 [][]@textbf ROracle

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97
 @texttt package=ROracle[]@textrm )[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98
 [][]@textbf RPostgreSQL

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt org /

Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98
 @texttt package=RPostgreSQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 [][]@textbf RSQLite

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101
 @texttt package=RSQLite[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 [][]@textbf WriteXLS

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt org /

Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103
 @texttt package=WriteXLS[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 [][]@textbf XLConnect

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt org /

Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104
 @texttt package=XLConnect[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 [][]@textbf XML

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105
 @texttt package=XML[]@textrm )[][]| 
[1] [2] Chapter 1 [3]
Writing index file R-data.cp
Cross reference values unknown; you must run TeX again. [4] [5] [6] [7]
Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4
[17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7
[26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33]
(Function and variable index) [34]
No file R-data.vrs.
(Concept index) [35]
No file R-data.cps.
[36] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (39 pages, 272945 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc [-1]) [-2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-data.aux)
Underfull \hbox (badness 10000) in paragraph at lines 87--87
 [][]@textbf DBI

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87
 @texttt package=DBI[]@textrm )[][]| 

Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88
 [][]@textbf dataframes2xls

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt org /

Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88
 @texttt package=dataframes2xls[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 [][]@textbf foreign

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89
 @texttt package=foreign[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 [][]@textbf gdata

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90
 @texttt package=gdata[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 [][]@textbf ncdf4

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91
 @texttt package=ncdf4[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 [][]@textbf rJava

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92
 @texttt package=rJava[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 [][]@textbf RJDBC

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93
 @texttt package=RJDBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 [][]@textbf RMySQL

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt org /

Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94
 @texttt package=RMySQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 [][]@textbf RNetCDF

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95
 @texttt package=RNetCDF[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 [][]@textbf RODBC

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96
 @texttt package=RODBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 [][]@textbf ROracle

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97
 @texttt package=ROracle[]@textrm )[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98
 [][]@textbf RPostgreSQL

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt org /

Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98
 @texttt package=RPostgreSQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 [][]@textbf RSQLite

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101
 @texttt package=RSQLite[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 [][]@textbf WriteXLS

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt org /

Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103
 @texttt package=WriteXLS[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 [][]@textbf XLConnect

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt org /

Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104
 @texttt package=XLConnect[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 [][]@textbf XML

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105
 @texttt package=XML[]@textrm )[][]| 
[1] [2] Chapter 1 [3]
Writing index file R-data.cp
[4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15]
[16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6
[25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32]
Appendix A [33] (Function and variable index) [34] [35] (Concept index)
[36] [37] [38] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (42 pages, 313002 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc [-1]) [-2]
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-data.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-data.aux)
Underfull \hbox (badness 10000) in paragraph at lines 87--87
 [][]@textbf DBI

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 87--87
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87
 @texttt package=DBI[]@textrm )[][]| 

Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88
 [][]@textbf dataframes2xls

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 88--88
 @texttt org /

Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88
 @texttt package=dataframes2xls[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 [][]@textbf foreign

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 89--89
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89
 @texttt package=foreign[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 [][]@textbf gdata

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 90--90
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90
 @texttt package=gdata[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 [][]@textbf ncdf4

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 91--91
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91
 @texttt package=ncdf4[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 [][]@textbf rJava

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 92--92
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92
 @texttt package=rJava[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 [][]@textbf RJDBC

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 93--93
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93
 @texttt package=RJDBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 [][]@textbf RMySQL

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 94--94
 @texttt org /

Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94
 @texttt package=RMySQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 [][]@textbf RNetCDF

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 95--95
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95
 @texttt package=RNetCDF[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 [][]@textbf RODBC

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 96--96
 @texttt org /

Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96
 @texttt package=RODBC[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 [][]@textbf ROracle

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 97--97
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97
 @texttt package=ROracle[]@textrm )[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98
 [][]@textbf RPostgreSQL

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 98--98
 @texttt org /

Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98
 @texttt package=RPostgreSQL[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 [][]@textbf RSQLite

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 101--101
 @texttt org /

Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101
 @texttt package=RSQLite[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 [][]@textbf WriteXLS

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 103--103
 @texttt org /

Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103
 @texttt package=WriteXLS[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 [][]@textbf XLConnect

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 104--104
 @texttt org /

Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104
 @texttt package=XLConnect[]@textrm )[][]| 

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 [][]@textbf XML

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt CRAN .

Underfull \hbox (badness 10000) in paragraph at lines 105--105
 @texttt org /

Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105
 @texttt package=XML[]@textrm )[][]| 
[1] [2] Chapter 1 [3]
Writing index file R-data.cp
[4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15]
[16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6
[25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32]
Appendix A [33] (Function and variable index) [34] [35] (Concept index)
[36] [37] [38] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (42 pages, 313002 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
@setfilename R-exts.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1
[1]
Writing index file R-exts.cp
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 493--496
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23] [24]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1965--1965
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[25] [26] [27] [28] [29]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2335--2335
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2337--2337
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[30] [31]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2479--2479
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2586--2588
[][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org
 / std / standing-documents / 
[34] [35]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 2719--2719
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
[36]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2862--2864
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] [54] [55] [56] [57] [58] [59] [60]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 4729--4729
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 4731--4731
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 4732--4732
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 4747--4747
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[61] [62] [63] [64] [65]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5055--5055
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[66] [67]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 5271--5271
 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me
mcpy[] 
[68]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5272--5272
 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro
r[] 
[69]
Overfull \hbox (25.1256pt too wide) in paragraph at lines 5369--5369
 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr
unc[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5401--5401
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5435--5435
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[71] [72]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5663--5663
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[73] [74] [75] Chapter 2 [76] [77] [78] [79] [80] [81] [82] [83] [84] [85]
[86] [87] [88] [89]
Underfull \hbox (badness 10000) in paragraph at lines 6923--6930
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90] [91] [92] [93]
Underfull \hbox (badness 10000) in paragraph at lines 7244--7248
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[94] [95] [96] Chapter 3 [97] [98] [99] [100] [101] [102]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 7845--7845
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[103] [104] [105] Chapter 4 [106] [107] [108]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 8223--8223
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[109]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 8264--8264
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[110]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 8368--8368
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 
[111]
Overfull \hbox (38.96663pt too wide) in paragraph at lines 8398--8407
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[112] [113] [114]
Overfull \hbox (44.18301pt too wide) in paragraph at lines 8675--8676
[][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs 
/ LightningTalks / EuroLLVM%202014%20--%20container%20overflow .
[115] [116]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 8807--8807
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

Overfull \hbox (29.50735pt too wide) in paragraph at lines 8835--8837
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]

Overfull \hbox (32.18782pt too wide) in paragraph at lines 8849--8849
 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo
und,vptr[] 
[117] [118]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 8967--8967
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[119]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9014--9014
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 9017--9017
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[120]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 9096--9096
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[121] [122]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 9301--9301
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
[123]
Overfull \hbox (147.16158pt too wide) in paragraph at lines 9317--9317
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 10103--10103
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 10159--10159
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136] [137] [138] [139] [140] [141] [142]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 10739--10739
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 11521--11521
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[153]
Underfull \hbox (badness 10000) in paragraph at lines 11582--11584
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[154] [155] [156] [157] [158] [159] [160]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12109--12109
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[161] [162]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12232--12232
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12237--12237
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12292--12292
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[163]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12304--12304
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[164]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 12403--12403
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[165] [166]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12539--12539
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[167]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12620--12620
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[168]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12716--12716
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181]
Underfull \hbox (badness 10000) in paragraph at lines 13895--13899
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[182] [183] Warning: unbalanced parentheses in @def... [184] [185]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14106--14106
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[186] [187] [188] [189] Chapter 7 [190] [191] Chapter 8 [192] [193] [194]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14862--14862
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[195]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14905--14905
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 14921--14921
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[196] [197] [198] [199]
Underfull \hbox (badness 10000) in paragraph at lines 15164--15171
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[200] [201] [202] [203] [204]
Underfull \hbox (badness 10000) in paragraph at lines 15547--15551
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [205]
No file R-exts.vrs.
(Concept index) [206]
No file R-exts.cps.
[207] )
(see the transcript file for additional information)pdfTeX warning (\pdffontatt
r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att
ributes assigned to @textsl

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
msltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (210 pages, 911696 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-exts.toc [-1] [-2] [-3]
[-4]) [-5] (/<<PKGBUILDDIR>>/doc/manual/R-exts.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 493--496
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23] [24]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1965--1965
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[25] [26] [27] [28] [29]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2335--2335
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2337--2337
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[30] [31]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2479--2479
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2586--2588
[][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org
 / std / standing-documents / 
[34] [35]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 2719--2719
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
[36]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2862--2864
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] [54] [55] [56] [57] [58] [59] [60]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 4729--4729
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 4731--4731
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 4732--4732
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 4747--4747
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[61] [62] [63] [64] [65]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5055--5055
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[66] [67]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 5271--5271
 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me
mcpy[] 
[68]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5272--5272
 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro
r[] 
[69]
Overfull \hbox (25.1256pt too wide) in paragraph at lines 5369--5369
 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr
unc[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5401--5401
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5435--5435
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[71] [72]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5663--5663
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[73] [74] [75] Chapter 2 [76] [77] [78] [79] [80] [81] [82] [83] [84] [85]
[86] [87] [88] [89]
Underfull \hbox (badness 10000) in paragraph at lines 6923--6930
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90] [91] [92] [93]
Underfull \hbox (badness 10000) in paragraph at lines 7244--7248
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[94] [95] [96] Chapter 3 [97] [98] [99] [100] [101] [102]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 7845--7845
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[103] [104] [105] Chapter 4 [106] [107] [108]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 8223--8223
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[109]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 8264--8264
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[110]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 8368--8368
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 
[111]
Overfull \hbox (38.96663pt too wide) in paragraph at lines 8398--8407
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[112] [113] [114]
Overfull \hbox (44.18301pt too wide) in paragraph at lines 8675--8676
[][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs 
/ LightningTalks / EuroLLVM%202014%20--%20container%20overflow .
[115] [116]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 8807--8807
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

Overfull \hbox (29.50735pt too wide) in paragraph at lines 8835--8837
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]

Overfull \hbox (32.18782pt too wide) in paragraph at lines 8849--8849
 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo
und,vptr[] 
[117] [118]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 8967--8967
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[119]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9014--9014
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 9017--9017
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[120]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 9096--9096
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[121] [122]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 9301--9301
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
[123]
Overfull \hbox (147.16158pt too wide) in paragraph at lines 9317--9317
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 10103--10103
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 10159--10159
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136] [137] [138] [139] [140] [141] [142]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 10739--10739
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 11521--11521
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[153]
Underfull \hbox (badness 10000) in paragraph at lines 11582--11584
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[154] [155] [156] [157] [158] [159] [160]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12109--12109
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[161] [162]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12232--12232
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12237--12237
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12292--12292
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[163]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12304--12304
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[164]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 12403--12403
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[165] [166]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12539--12539
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[167]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12620--12620
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[168]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12716--12716
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181]
Underfull \hbox (badness 10000) in paragraph at lines 13895--13899
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[182] [183] Warning: unbalanced parentheses in @def... [184] [185]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14106--14106
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[186] [187] [188] [189] Chapter 7 [190] [191] Chapter 8 [192] [193] [194]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14862--14862
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[195]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14905--14905
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 14921--14921
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[196] [197] [198] [199]
Underfull \hbox (badness 10000) in paragraph at lines 15164--15171
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[200] [201] [202] [203] [204]
Underfull \hbox (badness 10000) in paragraph at lines 15547--15551
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [205] [206] [207] [208] (Concept index) [209]
[210] [211] )
(see the transcript file for additional information)pdfTeX warning (\pdffontatt
r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att
ributes assigned to @textsl

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (218 pages, 975580 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-exts.toc [-1] [-2] [-3]
[-4]) [-5] (/<<PKGBUILDDIR>>/doc/manual/R-exts.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.toc) (Acknowledgements)
(/<<PKGBUILDDIR>>/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 493--496
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23] [24]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1965--1965
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[25] [26] [27] [28] [29]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2335--2335
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2337--2337
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[30] [31]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2479--2479
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2586--2588
[][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org
 / std / standing-documents / 
[34] [35]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 2719--2719
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
[36]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2862--2864
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] [54] [55] [56] [57] [58] [59] [60]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 4729--4729
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 4731--4731
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 4732--4732
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 4747--4747
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[61] [62] [63] [64] [65]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5055--5055
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[66] [67]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 5271--5271
 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me
mcpy[] 
[68]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5272--5272
 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro
r[] 
[69]
Overfull \hbox (25.1256pt too wide) in paragraph at lines 5369--5369
 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr
unc[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5401--5401
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5435--5435
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[71] [72]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 5663--5663
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[73] [74] [75] Chapter 2 [76] [77] [78] [79] [80] [81] [82] [83] [84] [85]
[86] [87] [88] [89]
Underfull \hbox (badness 10000) in paragraph at lines 6923--6930
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90] [91] [92] [93]
Underfull \hbox (badness 10000) in paragraph at lines 7244--7248
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[94] [95] [96] Chapter 3 [97] [98] [99] [100] [101] [102]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 7845--7845
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[103] [104] [105] Chapter 4 [106] [107] [108]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 8223--8223
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[109]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 8264--8264
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[110]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 8368--8368
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 
[111]
Overfull \hbox (38.96663pt too wide) in paragraph at lines 8398--8407
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[112] [113] [114]
Overfull \hbox (44.18301pt too wide) in paragraph at lines 8675--8676
[][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs 
/ LightningTalks / EuroLLVM%202014%20--%20container%20overflow .
[115] [116]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 8807--8807
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

Overfull \hbox (29.50735pt too wide) in paragraph at lines 8835--8837
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]

Overfull \hbox (32.18782pt too wide) in paragraph at lines 8849--8849
 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo
und,vptr[] 
[117] [118]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 8967--8967
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[119]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9014--9014
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 9017--9017
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[120]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 9096--9096
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[121] [122]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 9301--9301
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
[123]
Overfull \hbox (147.16158pt too wide) in paragraph at lines 9317--9317
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 10103--10103
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 10159--10159
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136] [137] [138] [139] [140] [141] [142]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 10739--10739
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 11521--11521
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[153]
Underfull \hbox (badness 10000) in paragraph at lines 11582--11584
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[154] [155] [156] [157] [158] [159] [160]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12109--12109
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[161] [162]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12232--12232
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12237--12237
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 12292--12292
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[163]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12304--12304
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[164]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 12403--12403
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[165] [166]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12539--12539
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[167]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12620--12620
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[168]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 12716--12716
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181]
Underfull \hbox (badness 10000) in paragraph at lines 13895--13899
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[182] [183] Warning: unbalanced parentheses in @def... [184] [185]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14106--14106
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[186] [187] [188] [189] Chapter 7 [190] [191] Chapter 8 [192] [193] [194]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14862--14862
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[195]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14905--14905
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 14921--14921
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[196] [197] [198] [199]
Underfull \hbox (badness 10000) in paragraph at lines 15164--15171
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[200] [201] [202] [203] [204]
Underfull \hbox (badness 10000) in paragraph at lines 15547--15551
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [205] [206] [207] [208] (Concept index) [209]
[210] [211] )
(see the transcript file for additional information)pdfTeX warning (\pdffontatt
r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att
ributes assigned to @textsl

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (218 pages, 975663 bytes).
Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi
@setfilename R-FAQ.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] [-1] Chapter 1
Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2]
[3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25]
[26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39] [40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3271--3279
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (50 pages, 359211 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc
[-1] [-2]) [-3] (/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2]
[3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25]
[26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39] [40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3271--3279
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (52 pages, 375765 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc
[-1] [-2]) [-3] (/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2]
[3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25]
[26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39] [40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3271--3279
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (52 pages, 375769 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
@setfilename R-intro.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
ist.pdf> </<<PKGBUILDDIR>>/doc/manual/images/ecdf.pdf>
[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KdjT4N/r-base-3.6.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </<<PKGBUILDDIR>>/doc/manual/images/f
ig11.pdf> [77] </<<PKGBUILDDIR>>/doc/manual/images/fig12.pdf>
[78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6447--6452
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
No file R-intro.vrs.
Appendix E [102]
No file R-intro.cps.
Appendix F [103] [104] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
mi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (107 pages, 577005 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-intro.toc [-1] [-2] [-3])
[-4] (/<<PKGBUILDDIR>>/doc/manual/R-intro.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-intro.toc) (Preface)
(/<<PKGBUILDDIR>>/doc/manual/R-intro.aux) Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
ist.pdf> </<<PKGBUILDDIR>>/doc/manual/images/ecdf.pdf>
[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KdjT4N/r-base-3.6.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </<<PKGBUILDDIR>>/doc/manual/images/f
ig11.pdf> [77] </<<PKGBUILDDIR>>/doc/manual/images/fig12.pdf>
[78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6447--6452
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E
[104] [105] Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (113 pages, 626514 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-intro.toc [-1] [-2] [-3])
[-4] (/<<PKGBUILDDIR>>/doc/manual/R-intro.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-intro.toc) (Preface)
(/<<PKGBUILDDIR>>/doc/manual/R-intro.aux) Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </<<PKGBUILDDIR>>/doc/manual/images/h
ist.pdf> </<<PKGBUILDDIR>>/doc/manual/images/ecdf.pdf>
[38] </<<PKGBUILDDIR>>/doc/manual/images/QQ.pdf> [39] </build/
r-base-KdjT4N/r-base-3.6.1/doc/manual/images/ice.pdf> [40] [41] Chapter 9
[42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </<<PKGBUILDDIR>>/doc/manual/images/f
ig11.pdf> [77] </<<PKGBUILDDIR>>/doc/manual/images/fig12.pdf>
[78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6447--6452
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E
[104] [105] Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (113 pages, 626581 bytes).
Transcript written on R-intro.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
@setfilename R-ints.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1455--1455
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1456--1456
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1457--1457
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1458--1458
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1983--1983
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u
sed for

Underfull \hbox (badness 7869) in paragraph at lines 4036--4044
 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI
LE_

Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] Chapter 9 [61] [62] Chapter 10 [63] Chapter 11
[64] Chapter 12 [65] [66] (Function and variable index) [67] [68]
No file R-ints.vrs.
(Concept index) [69]
No file R-ints.cps.
[70] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (73 pages, 401781 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1455--1455
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1456--1456
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1457--1457
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1458--1458
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1983--1983
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u
sed for

Underfull \hbox (badness 7869) in paragraph at lines 4036--4044
 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI
LE_

Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] Chapter 9 [61] [62] Chapter 10 [63] Chapter 11
[64] Chapter 12 [65] [66] (Function and variable index) [67] [68] [69]
(Concept index) [70] [71] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (76 pages, 452360 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-ints.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1455--1455
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1456--1456
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1457--1457
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1458--1458
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1983--1983
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3631--3640
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u
sed for

Underfull \hbox (badness 7869) in paragraph at lines 4036--4044
 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI
LE_

Underfull \hbox (badness 10000) in paragraph at lines 4036--4044
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] Chapter 9 [61] [62] Chapter 10 [63] Chapter 11
[64] Chapter 12 [65] [66] (Function and variable index) [67] [68] [69]
(Concept index) [70] [71] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (76 pages, 452364 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
@setfilename R-lang.info
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-lang.cp
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
No file R-lang.vrs.
(Concept Index) [60]
No file R-lang.cps.
Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 330507 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] [60] (Concept Index) [61] [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (69 pages, 379623 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-02-16.14]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/<<PKGBUILDDIR>>/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/<<PKGBUILDDIR>>/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/<<PKGBUILDDIR>>/doc/manual/version.texi) [1{/var/lib/texmf/f
onts/map/pdftex/updmap/pdftex.map}] [2]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc)
(/<<PKGBUILDDIR>>/doc/manual/R-lang.toc) Chapter 1
(/<<PKGBUILDDIR>>/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] [60] (Concept Index) [61] [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (69 pages, 379617 bytes).
Transcript written on R-lang.log.
make[1]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/make -k pdf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
No file fullrefman.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224]
No file fullrefman.ind.
(./fullrefman.aux)

Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2227 pages, 5563625 bytes).
Transcript written on fullrefman.log.
This is makeindex, version 2.15 [TeX Live 2019] (kpathsea + Thai support).
Scanning input file fullrefman.idx.................done (13921 entries accepted, 34 rejected).
Sorting entries..................................................................................................................................................done (213790 comparisons).
Generating output file fullrefman.ind................done (13715 lines written, 56 warnings).
Output written in fullrefman.ind.
Transcript written in fullrefman.ilg.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex
Chapter 1.
[1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224] (./fullrefman.ind [2225] [2226] [2227]
[2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238]
[2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249]
[2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260]
[2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271]
[2272] [2273] [2274]
Overfull \hbox (33.3567pt too wide) in paragraph at lines 8854--8856
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

[2275] [2276] [2277] [2278] [2279] [2280]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 10177--10179
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11923--11925
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11925--11927
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11927--11929
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297])
(./fullrefman.aux)

Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2328 pages, 6258028 bytes).
Transcript written on fullrefman.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2018-12-01>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2018/09/03 v1.4i Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex
Chapter 1.
[1] [2]
Underfull \hbox (badness 6995) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 297--301
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6] [7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 534--540
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1178--1181
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 1953--1953
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[31] [32] [33] [34] [35] [36] [37]
Underfull \hbox (badness 10000) in paragraph at lines 2389--2391
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by

Underfull \hbox (badness 10000) in paragraph at lines 2392--2397
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via

Underfull \hbox (badness 1102) in paragraph at lines 2392--2397
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit

[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55] [56] [57] [58] [59]
Underfull \hbox (badness 10000) in paragraph at lines 3771--3773
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[60] [61] [62]
Overfull \hbox (6.42029pt too wide) in paragraph at lines 4012--4012
 []   \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...)
, recursive=recursive) 
[63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77]
[78]
Underfull \hbox (badness 2521) in paragraph at lines 5033--5035
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93]
[94] [95] [96]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6189--6189
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[97] [98] [99] [100] [101] [102]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6598--6600
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : 
[103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 6746--6749
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[105] [106]
Underfull \hbox (badness 6063) in paragraph at lines 6928--6934
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-


Underfull \hbox (badness 2343) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-

Underfull \hbox (badness 1708) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when

Underfull \hbox (badness 1831) in paragraph at lines 6928--6934
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[107]
Underfull \hbox (badness 3568) in paragraph at lines 6990--6997
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[108] [109]
Underfull \vbox (badness 10000) has occurred while \output is active [110]
Underfull \vbox (badness 10000) has occurred while \output is active [111]
[112]
Underfull \hbox (badness 1077) in paragraph at lines 7307--7313
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater

Underfull \hbox (badness 1231) in paragraph at lines 7307--7313
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[113] [114] [115] [116] [117] [118]
Underfull \hbox (badness 2096) in paragraph at lines 7648--7652
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[119] [120]
Underfull \hbox (badness 2351) in paragraph at lines 7766--7769
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[121] [122] [123] [124] [125]
Underfull \hbox (badness 4479) in paragraph at lines 8092--8102
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 1629) in paragraph at lines 8539--8551
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 1609) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which

Underfull \hbox (badness 2426) in paragraph at lines 8539--8551
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 1178) in paragraph at lines 9275--9279
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155] [156] [157] [158] [159] [160]
Underfull \hbox (badness 1735) in paragraph at lines 10423--10427
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[161] [162] [163] [164] [165] [166] [167]
Underfull \hbox (badness 6396) in paragraph at lines 10862--10870
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 1946) in paragraph at lines 10862--10870
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
[180] [181] [182] [183] [184]
Underfull \hbox (badness 4569) in paragraph at lines 11978--11982
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11978--11982
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196]
[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208]
[209]
Underfull \hbox (badness 2253) in paragraph at lines 13641--13643
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[210]
Underfull \hbox (badness 1565) in paragraph at lines 13712--13716
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[211]
Underfull \hbox (badness 4927) in paragraph at lines 13756--13758
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[212]
Underfull \hbox (badness 3148) in paragraph at lines 13849--13854
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[213]
Underfull \hbox (badness 1466) in paragraph at lines 13896--13899
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[214] [215]
Underfull \hbox (badness 10000) in paragraph at lines 14015--14019
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 14026--14029
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[216] [217] [218] [219]
Underfull \hbox (badness 3965) in paragraph at lines 14316--14320
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
[232]
Underfull \hbox (badness 4429) in paragraph at lines 15092--15095
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[233] [234]
Underfull \hbox (badness 10000) in paragraph at lines 15198--15200
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls

Underfull \hbox (badness 1215) in paragraph at lines 15198--15200
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see

Underfull \hbox (badness 10000) in paragraph at lines 15220--15225
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls

Underfull \hbox (badness 1558) in paragraph at lines 15220--15225
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not

Underfull \hbox (badness 10000) in paragraph at lines 15232--15236
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so

Underfull \hbox (badness 2426) in paragraph at lines 15232--15236
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[235]
Underfull \hbox (badness 2035) in paragraph at lines 15271--15275
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[236]
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 2452) in paragraph at lines 15870--15874
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 15870--15874
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[245] [246] [247]
Underfull \hbox (badness 1092) in paragraph at lines 16043--16048
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[248] [249] [250]
Underfull \hbox (badness 6741) in paragraph at lines 16293--16297
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \vbox (badness 3803) has occurred while \output is active [260]
Underfull \vbox (badness 10000) has occurred while \output is active [261]
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1478) in paragraph at lines 17582--17585
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[271] [272] [273] [274]
Underfull \hbox (badness 10000) in paragraph at lines 17837--17839
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[275] [276] [277] [278] [279] [280] [281] [282] [283]
Underfull \hbox (badness 1442) in paragraph at lines 18437--18439
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[284]
Underfull \hbox (badness 2452) in paragraph at lines 18529--18545
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[285] [286] [287] [288] [289] [290] [291]
Underfull \hbox (badness 1248) in paragraph at lines 18948--18951
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[292] [293] [294] [295]
Underfull \hbox (badness 4739) in paragraph at lines 19206--19208
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[296] [297] [298] [299] [300] [301]
Underfull \hbox (badness 1596) in paragraph at lines 19625--19630
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 2469) in paragraph at lines 20229--20234
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 20243--20250
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /
[313]
Underfull \hbox (badness 10000) in paragraph at lines 20317--20321
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 20317--20321
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[314] [315]
Underfull \hbox (badness 1014) in paragraph at lines 20487--20492
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327]
Underfull \hbox (badness 1264) in paragraph at lines 21276--21281
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[328]
Underfull \hbox (badness 4441) in paragraph at lines 21305--21308
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 6047) in paragraph at lines 22052--22054
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355] [356]
Underfull \hbox (badness 1077) in paragraph at lines 23093--23099
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 2790) in paragraph at lines 23589--23592
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 23589--23592
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[366] [367] [368] [369]
Underfull \hbox (badness 1194) in paragraph at lines 23871--23874
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[370] [371] [372]
Underfull \hbox (badness 2368) in paragraph at lines 24077--24083
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,

Underfull \hbox (badness 4981) in paragraph at lines 24077--24083
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[373] [374] [375] [376] [377] [378]
Underfull \hbox (badness 10000) in paragraph at lines 24459--24462
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[379] [380] [381] [382] [383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25064--25066
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399]
[400]
Underfull \hbox (badness 1038) in paragraph at lines 25904--25912
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1735) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-

Underfull \hbox (badness 1292) in paragraph at lines 25904--25912
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set

Underfull \hbox (badness 1881) in paragraph at lines 25913--25916
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 25932--25934
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[401] [402]
Underfull \hbox (badness 2142) in paragraph at lines 26073--26077
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 26123--26128
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[403] [404] [405] [406]
Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 26411--26417
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 26424--26427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 26485--26490
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 26491--26502
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
[407]
Underfull \hbox (badness 7203) in paragraph at lines 26503--26506
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 26527--26532
[]\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma
-cOS build),

Underfull \hbox (badness 2057) in paragraph at lines 26527--26532
\T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both"
 \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds).
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 27045--27048
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[416]
Underfull \hbox (badness 7925) in paragraph at lines 27124--27128
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to

Underfull \hbox (badness 1622) in paragraph at lines 27124--27128
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 6125) in paragraph at lines 27129--27138
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427]
Underfull \hbox (badness 2726) in paragraph at lines 27850--27853
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445]
Underfull \vbox (badness 3803) has occurred while \output is active [446]
[447] [448] [449] [450] [451] [452] [453]
Underfull \hbox (badness 1533) in paragraph at lines 29541--29544
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[454] [455] [456]
Underfull \hbox (badness 1163) in paragraph at lines 29704--29715
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468]
[469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480]
Underfull \hbox (badness 10000) in paragraph at lines 31250--31254
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 31250--31254
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 31272--31274
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[481] [482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1655) in paragraph at lines 31828--31830
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506]
Underfull \hbox (badness 2261) in paragraph at lines 32947--32952
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[507]
Underfull \hbox (badness 10000) in paragraph at lines 32974--32980
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 1484) in paragraph at lines 32974--32980
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
[532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543]
[544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555]
Underfull \hbox (badness 1072) in paragraph at lines 36116--36120
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 36121--36125
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 36149--36155
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 36161--36168
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 36161--36168
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[556] [557] [558] [559] [560] [561]
Underfull \hbox (badness 1142) in paragraph at lines 36514--36520
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573]
[574] [575] [576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 1565) in paragraph at lines 37787--37789
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[582] [583] [584] [585] [586] [587] [588] [589] [590] [591]
Underfull \hbox (badness 4967) in paragraph at lines 38386--38391
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[592] [593]
Underfull \hbox (badness 1616) in paragraph at lines 38499--38504
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[594] [595] [596] [597]
Underfull \vbox (badness 10000) has occurred while \output is active [598]
[599] [600] [601] [602]
Underfull \hbox (badness 1472) in paragraph at lines 39025--39028
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614]
[615]
Underfull \vbox (badness 3803) has occurred while \output is active [616]
Underfull \hbox (badness 10000) in paragraph at lines 39939--39943
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[617] [618] [619] [620]
Underfull \hbox (badness 10000) in paragraph at lines 40190--40193
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[621] [622] [623]
Underfull \hbox (badness 10000) in paragraph at lines 40374--40378
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[624] [625] [626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40987--40990
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[633] [634] [635] [636] [637] [638]
Underfull \vbox (badness 10000) has occurred while \output is active [639]
[640] [641] [642] [643] [644] [645] [646]
Underfull \hbox (badness 1990) in paragraph at lines 41890--41898
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 41890--41898
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[647] [648] [649] [650] [651] [652] [653] [654]
Underfull \hbox (badness 1917) in paragraph at lines 42396--42403
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 43125--43127
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666] [667]
Underfull \hbox (badness 2401) in paragraph at lines 43253--43257
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[668] [669] [670]
Underfull \hbox (badness 2111) in paragraph at lines 43442--43447
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 10000) in paragraph at lines 43463--43468
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[671] [672] [673] [674] [675] [676] [677] [678] [679]
Underfull \hbox (badness 5417) in paragraph at lines 44045--44049
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[680]
Underfull \hbox (badness 10000) in paragraph at lines 44106--44110
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[681] [682]) (./compiler-pkg.tex
Chapter 2.
[683] [684] [685] [686]) (./datasets-pkg.tex
Chapter 3.
[687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698]
[699] [700] [701] [702] [703]
Underfull \hbox (badness 1097) in paragraph at lines 1031--1035
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]
Underfull \vbox (badness 1448) has occurred while \output is active [727]
[728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738]
Overfull \vbox (19.74611pt too high) has occurred while \output is active
[739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750]
[751] [752] [753] [754]
Underfull \vbox (badness 10000) has occurred while \output is active [755]
[756] [757] [758]
Underfull \vbox (badness 10000) has occurred while \output is active [759]
[760] [761] [762] [763] [764]
Overfull \vbox (18.9959pt too high) has occurred while \output is active
[765] [766] [767]) (./grDevices-pkg.tex [768]
Chapter 4.
[769] [770] [771] [772] [773]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in

Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785]
[786]
Underfull \hbox (badness 5175) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[787] [788] [789] [790]
Underfull \hbox (badness 1852) in paragraph at lines 1322--1325
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[791] [792] [793]
Underfull \hbox (badness 1490) in paragraph at lines 1528--1533
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 1325) in paragraph at lines 1934--1944
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 2046--2048
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[802] [803] [804]
Underfull \hbox (badness 6758) in paragraph at lines 2224--2227
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[805] [806] [807] [808] [809] [810] [811] [812] [813] [814]
Underfull \hbox (badness 10000) in paragraph at lines 2828--2829

[815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 3384--3389
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[824] [825] [826] [827] [828]
Underfull \vbox (badness 10000) has occurred while \output is active [829]
Underfull \hbox (badness 10000) in paragraph at lines 3785--3788
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840]
Underfull \hbox (badness 10000) in paragraph at lines 4514--4519
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]

Underfull \hbox (badness 4181) in paragraph at lines 4514--4519
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne
t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in
[841]
Underfull \vbox (badness 10000) has occurred while \output is active [842]
[843]
Underfull \hbox (badness 1067) in paragraph at lines 4668--4675
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[844] [845] [846] [847]
Underfull \hbox (badness 1377) in paragraph at lines 4971--4976
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[848]
Underfull \hbox (badness 1418) in paragraph at lines 5047--5054
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 5065--5067
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[849] [850]
Underfull \hbox (badness 1377) in paragraph at lines 5176--5181
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[851]
Underfull \hbox (badness 7344) in paragraph at lines 5245--5247
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[852] [853]
Underfull \hbox (badness 2035) in paragraph at lines 5380--5389
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 5380--5389
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[854]
Underfull \hbox (badness 10000) in paragraph at lines 5448--5455
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5448--5455
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[855] [856] [857]
Underfull \hbox (badness 1546) in paragraph at lines 5590--5598
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[858] [859] [860] [861] [862] [863] [864] [865]
Underfull \hbox (badness 10000) in paragraph at lines 6125--6128
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877]
[878]
Underfull \hbox (badness 1189) in paragraph at lines 6947--6949
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[879]
Underfull \hbox (badness 10000) in paragraph at lines 7045--7047
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[880] [881] [882] [883] [884]
Underfull \hbox (badness 3780) in paragraph at lines 7345--7351
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[885] [886] [887]
Underfull \hbox (badness 2680) in paragraph at lines 7546--7548
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[888] [889] [890]) (./graphics-pkg.tex
Chapter 5.
[891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902]
[903] [904] [905] [906] [907] [908] [909] [910] [911] [912]
Underfull \hbox (badness 4634) in paragraph at lines 1351--1354
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924]
[925] [926] [927] [928] [929]
Underfull \hbox (badness 1009) in paragraph at lines 2390--2397
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941]
[942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
Underfull \hbox (badness 3229) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[966] [967] [968] [969] [970]
Underfull \hbox (badness 10000) in paragraph at lines 4891--4897
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4891--4897
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[971]
Underfull \hbox (badness 10000) in paragraph at lines 5022--5025

[972]
Underfull \hbox (badness 10000) in paragraph at lines 5083--5085

[973 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]
[974 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[975]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5275
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[976]
Underfull \vbox (badness 3803) has occurred while \output is active [977]
[978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989]
[990] [991] [992] [993] [994] [995] [996] [997] [998]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6751--6752
[][] 
[999] [1000 </<<PKGBUILDDIR>>/library/graphics/help/figures/pc
h.pdf>] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010]
[1011] [1012]
Underfull \hbox (badness 2012) in paragraph at lines 7576--7579
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023]
[1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033]
Underfull \hbox (badness 10000) in paragraph at lines 8836--8838
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color

Underfull \hbox (badness 10000) in paragraph at lines 8838--8840
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[1034]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8918 \HeaderA{units}{Graphical Units}{units}
                                               [1035] [1036] [1037] [1038])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [1039]
[1040] [1041] [1042] [1043] [1044] [1045] [1046]
Underfull \hbox (badness 2680) in paragraph at lines 483--486
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 4279) in paragraph at lines 1064--1073
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067]
[1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089]
[1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100]
Underfull \vbox (badness 10000) has occurred while \output is active [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112]
[1113] [1114]
Underfull \hbox (badness 1067) in paragraph at lines 4486--4489
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1115] [1116] [1117] [1118]
Underfull \hbox (badness 7256) in paragraph at lines 4731--4733
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129]
[1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140]
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1824) in paragraph at lines 6535--6538
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1150] [1151] [1152] [1153]) (./methods-pkg.tex [1154]
Chapter 7.
[1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
Underfull \vbox (badness 3803) has occurred while \output is active [1163]
Underfull \vbox (badness 10000) has occurred while \output is active [1164]
[1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
[1182]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1183] [1184] [1185]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1186] [1187] [1188] [1189] [1190]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1191] [1192]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1193]
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1194] [1195] [1196] [1197] [1198] [1199] [1200]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1201] [1202] [1203] [1204] [1205]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
[1206]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1207]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \vbox (badness 10000) has occurred while \output is active [1229]
[1230] [1231]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1232]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1233] [1234] [1235] [1236]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1245] [1246] [1247] [1248]
Underfull \vbox (badness 10000) has occurred while \output is active [1249]
[1250] [1251] [1252]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1253] [1254] [1255]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1256]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1257] [1258] [1259]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270]
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283] [1284] [1285] [1286]
Underfull \vbox (badness 10000) has occurred while \output is active [1287]
[1288] [1289] [1290] [1291] [1292] [1293] [1294]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1295] [1296] [1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1302] [1303] [1304] [1305]) (./parallel-pkg.tex [1306]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 3386) in paragraph at lines 1365--1368
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1328] [1329] [1330]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
[1342] [1343] [1344] [1345] [1346]) (./stats-pkg.tex
Chapter 10.
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357]
[1358] [1359] [1360]
Underfull \hbox (badness 1412) in paragraph at lines 875--877
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368]
Underfull \hbox (badness 2503) in paragraph at lines 1356--1359
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1369] [1370] [1371]
Underfull \hbox (badness 10000) in paragraph at lines 1536--1540
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393]
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
Underfull \hbox (badness 2503) in paragraph at lines 3437--3440
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415] [1416]
Underfull \hbox (badness 1127) in paragraph at lines 4351--4354
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1417] [1418] [1419] [1420] [1421]
Underfull \hbox (badness 3989) in paragraph at lines 4681--4688
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431]
Underfull \hbox (badness 2556) in paragraph at lines 5317--5320
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5334--5336
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1432] [1433] [1434] [1435] [1436] [1437] [1438]
Underfull \hbox (badness 2503) in paragraph at lines 5726--5730
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449]
[1450] [1451]
Underfull \hbox (badness 7081) in paragraph at lines 6520--6523
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6524--6526
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1452] [1453] [1454] [1455] [1456]
Underfull \vbox (badness 3803) has occurred while \output is active [1457]
[1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 10000) in paragraph at lines 7369--7372
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475]
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \vbox (badness 10000) has occurred while \output is active [1487]
[1488] [1489] [1490] [1491]
Underfull \hbox (badness 2626) in paragraph at lines 9048--9051
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1492] [1493]
Underfull \hbox (badness 2503) in paragraph at lines 9155--9159
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513]
Underfull \hbox (badness 4518) in paragraph at lines 10465--10470
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 2142) in paragraph at lines 10825--10828
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10844--10847
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1519]
Underfull \hbox (badness 1708) in paragraph at lines 10906--10910
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1520] [1521] [1522] [1523] [1524] [1525]
Underfull \hbox (badness 1694) in paragraph at lines 11302--11305
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1526] [1527] [1528] [1529] [1530] [1531]
Underfull \hbox (badness 10000) in paragraph at lines 11629--11632
[]\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds 
[][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq
uiv-a-lent of

Underfull \hbox (badness 1281) in paragraph at lines 11629--11632
\T1/zi4/m/n/10 qhyper(runif(nn),m,n,k) \T1/ptm/m/n/10 is used, when a bi-no-mia
l ap-prox-i-ma-tion may be con-sid-er-ably
[1532] [1533]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.hat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11783 \aliasA{hat}{influence.measures}{hat}
                                              [1534] [1535]
Underfull \hbox (badness 1484) in paragraph at lines 11918--11920
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
Underfull \hbox (badness 10000) in paragraph at lines 12511--12513
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1546] [1547] [1548] [1549] [1550] [1551]
Underfull \hbox (badness 2894) in paragraph at lines 12847--12851
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562]
[1563]
Underfull \hbox (badness 4518) in paragraph at lines 13597--13602
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 4518) in paragraph at lines 14249--14254
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1574] [1575]
Underfull \hbox (badness 8151) in paragraph at lines 14387--14391
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14394--14396
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593]
Underfull \hbox (badness 2503) in paragraph at lines 15465--15469
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601]
Underfull \hbox (badness 4621) in paragraph at lines 15977--15983
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/
ptm/m/n/10 and
[1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612]
[1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623]
[1624] [1625] [1626] [1627] [1628] [1629]
Underfull \vbox (badness 10000) has occurred while \output is active [1630]
Underfull \vbox (badness 10000) has occurred while \output is active [1631]
[1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642]
[1643]
Underfull \hbox (badness 1377) in paragraph at lines 18576--18581
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18581--18584
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
[1644]
Underfull \hbox (badness 2343) in paragraph at lines 18594--18598
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 18594--18598
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18602--18606
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1645] [1646] [1647]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 18827--18827
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 18830--18830
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

Underfull \vbox (badness 10000) has occurred while \output is active [1648]
[1649] [1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 1337) in paragraph at lines 19252--19255
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663]
Underfull \hbox (badness 3049) in paragraph at lines 19748--19752
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1664] [1665] [1666] [1667]
Underfull \hbox (badness 1194) in paragraph at lines 20006--20009
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1668] [1669] [1670] [1671] [1672] [1673] [1674]
Underfull \hbox (badness 2503) in paragraph at lines 20381--20384
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 20408--20410
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685]
[1686] [1687] [1688] [1689] [1690] [1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 21485--21491
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703]
[1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714]
[1715]
Underfull \hbox (badness 1337) in paragraph at lines 22834--22840
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723]
Overfull \hbox (27.74408pt too wide) in paragraph at lines 23399--23399
 []  \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty
p, ...), quantile(x, prob, type=1)))[] 
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 23650--23653
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 4205) in paragraph at lines 23650--23653
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
Underfull \hbox (badness 10000) in paragraph at lines 24235--24238
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1738]
Underfull \hbox (badness 3690) in paragraph at lines 24287--24291
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \vbox (badness 10000) has occurred while \output is active [1746]
[1747]
Underfull \hbox (badness 2165) in paragraph at lines 24777--24782
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1748] [1749] [1750]
Underfull \hbox (badness 1867) in paragraph at lines 24982--24984
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 24995--24999
\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u
se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
[1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772]
[1773] [1774]
Underfull \vbox (badness 10000) has occurred while \output is active [1775]
Underfull \hbox (badness 3514) in paragraph at lines 26556--26561
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1776] [1777] [1778] [1779]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 26790--26790
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1780]
Underfull \hbox (badness 3514) in paragraph at lines 26826--26832
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1781] [1782] [1783] [1784]
Underfull \hbox (badness 3514) in paragraph at lines 27040--27045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1785] [1786]
Underfull \hbox (badness 3514) in paragraph at lines 27127--27132
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1787]
Underfull \hbox (badness 3514) in paragraph at lines 27192--27197
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1788] [1789]
Underfull \hbox (badness 3514) in paragraph at lines 27286--27291
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1790]
Underfull \hbox (badness 6691) in paragraph at lines 27378--27383
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799]
Underfull \hbox (badness 4024) in paragraph at lines 27908--27911
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
Underfull \hbox (badness 5431) in paragraph at lines 28514--28516
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1810] [1811] [1812]
Underfull \hbox (badness 5431) in paragraph at lines 28724--28727
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1813] [1814] [1815] [1816] [1817] [1818]
Underfull \hbox (badness 1337) in paragraph at lines 29038--29042
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1819] [1820] [1821] [1822] [1823]
Underfull \hbox (badness 1616) in paragraph at lines 29340--29343
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834]
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842]
Underfull \hbox (badness 3557) in paragraph at lines 30470--30474
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1843] [1844] [1845]
Underfull \vbox (badness 10000) has occurred while \output is active [1846]
[1847] [1848]
Underfull \hbox (badness 1337) in paragraph at lines 30834--30838
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 1337) in paragraph at lines 31361--31365
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867])
(./stats4-pkg.tex [1868]
Chapter 11.
[1869] [1870] [1871] [1872] [1873] [1874]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1875] [1876] [1877])
(./tcltk-pkg.tex [1878]
Chapter 12.
[1879] [1880] [1881] [1882] [1883] [1884] [1885]
Underfull \vbox (badness 10000) has occurred while \output is active [1886]
Underfull \vbox (badness 10000) has occurred while \output is active [1887]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1888] [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898]
[1899]) (./tools-pkg.tex [1900]
Chapter 13.
[1901]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1902]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1903] [1904]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1905] [1906]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917]
[1918]
Underfull \hbox (badness 4441) in paragraph at lines 1139--1149
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1919]
Underfull \hbox (badness 1014) in paragraph at lines 1163--1165
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1169--1171
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1920]
Underfull \hbox (badness 10000) in paragraph at lines 1206--1209
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1921] [1922] [1923] [1924] [1925]
Underfull \hbox (badness 2293) in paragraph at lines 1558--1560
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1926] [1927]
Underfull \hbox (badness 7981) in paragraph at lines 1696--1701
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1703--1705
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1928] [1929] [1930] [1931]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1932] [1933] [1934]
[1935] [1936]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1937] [1938] [1939]
Underfull \hbox (badness 7981) in paragraph at lines 2371--2377
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1940] [1941] [1942] [1943] [1944] [1945] [1946]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2846.

[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1424) in paragraph at lines 3128--3130
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962]
Underfull \hbox (badness 10000) in paragraph at lines 3832--3834
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1963] [1964]
Underfull \hbox (badness 10000) in paragraph at lines 3971--3974
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1965] [1966]
Underfull \hbox (badness 1137) in paragraph at lines 4073--4075
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1967] [1968] [1969] [1970] [1971]
Underfull \hbox (badness 1796) in paragraph at lines 4381--4386
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type ==
[1972]
Underfull \hbox (badness 1838) in paragraph at lines 4455--4461
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4455--4461
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1973] [1974] [1975]
Underfull \hbox (badness 2197) in paragraph at lines 4671--4681
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 :
[1976]
Underfull \hbox (badness 1571) in paragraph at lines 4734--4738
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1977] [1978] [1979]) (./utils-pkg.tex [1980]
Chapter 14.
[1981]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 376--381
\T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1987] [1988] [1989] [1990] [1991]
Underfull \hbox (badness 10000) in paragraph at lines 717--723
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 717--723
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1992] [1993]
Underfull \hbox (badness 5847) in paragraph at lines 850--856
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 850--856
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1994]
Underfull \hbox (badness 3861) in paragraph at lines 918--923
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1995] [1996]
Underfull \hbox (badness 3323) in paragraph at lines 1089--1097
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-

Underfull \hbox (badness 2961) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-

Underfull \hbox (badness 3919) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is

Underfull \hbox (badness 3735) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally.

Underfull \hbox (badness 1817) in paragraph at lines 1089--1097
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
[1997]
Underfull \hbox (badness 10000) in paragraph at lines 1101--1103
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1998] [1999]
Underfull \vbox (badness 3803) has occurred while \output is active [2000]
[2001] [2002] [2003] [2004]
Underfull \hbox (badness 1371) in paragraph at lines 1606--1608
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 2057) in paragraph at lines 2215--2217
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[2015] [2016] [2017] [2018] [2019] [2020]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.2566 ... the Clipboard in MS Windows}{clipboard}
                                                   [2021] [2022]
Underfull \hbox (badness 1748) in paragraph at lines 2733--2736
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[2023] [2024] [2025] [2026] [2027] [2028] [2029]
Underfull \hbox (badness 5388) in paragraph at lines 3142--3146
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header =

Underfull \hbox (badness 2285) in paragraph at lines 3147--3150
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[]
[][](...,header = TRUE,sep =
[2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040]
Underfull \hbox (badness 1430) in paragraph at lines 3906--3914
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[2041]
Underfull \hbox (badness 1231) in paragraph at lines 3983--3995
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[2042] [2043]
Underfull \hbox (badness 10000) in paragraph at lines 4143--4145
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054]
[2055]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4841 ...mat Unordered and Ordered Lists}{format}
                                                   [2056] [2057] [2058]
[2059] [2060] [2061] [2062] [2063]
Underfull \hbox (badness 1622) in paragraph at lines 5360--5364
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 1371) in paragraph at lines 5996--5998
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[2074]
Underfull \hbox (badness 1502) in paragraph at lines 6085--6090
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6085--6090
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2075] [2076] [2077]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6267
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[2078]
Underfull \hbox (badness 2150) in paragraph at lines 6322--6325
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2079] [2080]
Underfull \hbox (badness 3118) in paragraph at lines 6460--6462
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2081] [2082] [2083]
Underfull \hbox (badness 1325) in paragraph at lines 6632--6636
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able

Underfull \hbox (badness 4726) in paragraph at lines 6644--6650
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[2084]
Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

Underfull \hbox (badness 10000) in paragraph at lines 6716--6719
\T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
[2085]
Underfull \hbox (badness 3219) in paragraph at lines 6792--6799
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 6792--6799
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 6792--6799
[][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently

Underfull \hbox (badness 2932) in paragraph at lines 6800--6803
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[2086]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6941
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097]
[2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108]
[2109] [2110] [2111]
Underfull \hbox (badness 10000) in paragraph at lines 8436--8438
[]\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from

Underfull \hbox (badness 2310) in paragraph at lines 8458--8463
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119]
Underfull \hbox (badness 1248) in paragraph at lines 8982--8986
[]\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2120]
Underfull \hbox (badness 1789) in paragraph at lines 9060--9062
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130]
Underfull \vbox (badness 10000) has occurred while \output is active [2131]
[2132] [2133]
Underfull \hbox (badness 1097) in paragraph at lines 9897--9900
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2134] [2135]
Underfull \hbox (badness 3000) in paragraph at lines 10033--10038
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144]
Underfull \hbox (badness 2134) in paragraph at lines 10616--10621
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;

Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 10672--10677
\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153]
Underfull \hbox (badness 2469) in paragraph at lines 11165--11169
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 11165--11169
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2154] [2155] [2156] [2157] [2158]
Underfull \hbox (badness 4060) in paragraph at lines 11496--11499
[]\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 11519--11519
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2159] [2160] [2161] [2162]
Underfull \hbox (badness 2150) in paragraph at lines 11758--11760
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2163] [2164] [2165] [2166]
Underfull \hbox (badness 10000) in paragraph at lines 11977--11981
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12008--12014
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2167] [2168] [2169]
Underfull \hbox (badness 1009) in paragraph at lines 12202--12214
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 12239--12241
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
[2170]
Underfull \hbox (badness 1077) in paragraph at lines 12269--12276
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2171] [2172] [2173] [2174] [2175] [2176]
Underfull \hbox (badness 3780) in paragraph at lines 12670--12674
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 12686--12689
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2177] [2178] [2179] [2180]
Underfull \hbox (badness 2302) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2181] [2182] [2183] [2184]
Underfull \hbox (badness 10000) in paragraph at lines 13187--13192
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/sl/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 13196--13199
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2185] [2186]
Underfull \vbox (badness 10000) has occurred while \output is active [2187]
[2188] [2189] [2190] [2191]
Underfull \hbox (badness 2932) in paragraph at lines 13616--13623
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 13616--13623
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2192] [2193] [2194] [2195] [2196]
Underfull \hbox (badness 6510) in paragraph at lines 13925--13929
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble

Underfull \hbox (badness 10000) in paragraph at lines 13932--13935
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

Underfull \hbox (badness 2245) in paragraph at lines 13932--13935
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206]
Underfull \hbox (badness 10000) in paragraph at lines 14596--14601
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 14596--14601
[][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n
/10 and

Underfull \hbox (badness 1052) in paragraph at lines 14602--14604
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2207]
Underfull \hbox (badness 10000) in paragraph at lines 14661--14664
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218]
[2219]
Underfull \hbox (badness 10000) in paragraph at lines 15434--15436
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/sl/10 file =
[2220] [2221] [2222] [2223]) [2224] (./fullrefman.ind [2225] [2226] [2227]
[2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238]
[2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249]
[2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260]
[2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271]
[2272] [2273] [2274]
Overfull \hbox (33.3567pt too wide) in paragraph at lines 8854--8856
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

[2275] [2276] [2277] [2278] [2279] [2280]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 10177--10179
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11923--11925
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11925--11927
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 11927--11929
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297])
(./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/
fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi
8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2328 pages, 6258116 bytes).
Transcript written on fullrefman.log.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/make -k vignettes
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[4]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
installing parsed Rd
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
writing package indices
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library/Recommended'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library/Recommended'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library'
building/updating vignettes for package 'grid' ...
processing 'grid.Rnw'
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
touch make-indep-stamp
*** check ***
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/<<PKGBUILDDIR>>/debian/r-base-core
/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
installing doc ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
installing doc/html ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
installing doc/manual ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
installing share ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tzone'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tzone'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd src/unix; 						\
	rm -vf Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings src/unix/Rscript
cp -vax src/unix/Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install )
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
chmod a+x	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh/echo.sh
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr			\
		rdocdir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
installing R manuals in PDF format ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr  \
		infodir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/*.gz
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.6% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.6% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 69.7% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-3.gz:	 83.3% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-3
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info.gz:	 70.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info.gz:	 68.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.6% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir		\
	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir.old
removed '/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /<<PKGBUILDDIR>>/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 2200
-rw-rw-r-- 1 root root 1346502 Sep 25 07:55 libRmath.a
-rwxrwxr-x 1 root root  902240 Sep 25 07:55 libRmath.so
drwxr-xr-x 1 root root      22 Sep 25 07:55 pkgconfig
renamed 'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/<<PKGBUILDDIR>>/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc; \
	cat /<<PKGBUILDDIR>>/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 46 with fuzz 2 (offset 13 lines).
done
dh_bash-completion
# edd 12 Jan 2016  new location
#install -m 0644 debian/R.bash-completion \
#	debian/r-base-core/usr/share/bash-completion/completions/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
#dh_installmenu -a
# (cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /<<PKGBUILDDIR>>/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /<<PKGBUILDDIR>>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS
dh_strip --dbg-package=r-base-core-dbg
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: substitution variable ${perl:Depends} used, but is not defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_3.6.1-5_armhf.deb'.
dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_3.6.1-5_armhf.deb'.
dpkg-deb: building package 'r-base-core' in '../r-base-core_3.6.1-5_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../r-base_3.6.1-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-09-25T07:57:55Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-base_3.6.1-5_armhf.changes:
-----------------------------

Format: 1.8
Date: Thu, 19 Sep 2019 21:42:10 -0500
Source: r-base
Binary: r-base-core r-base-core-dbg r-mathlib
Architecture: armhf
Version: 3.6.1-5
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-mathlib  - GNU R standalone mathematics library
Changes:
 r-base (3.6.1-5) unstable; urgency=medium
 .
   * debian/control: Add build-indep back to build target
Checksums-Sha1:
 e35d538fbe04ff454303cfbd934e099ae0fdff0b 6401884 r-base-core-dbg_3.6.1-5_armhf.deb
 ab4c3837c68f85235b3a7eee2d7e0262c20cb7ab 24348508 r-base-core_3.6.1-5_armhf.deb
 4c878133d077bd3ebd60c7b16312ba6c0bf72623 13331 r-base_3.6.1-5_armhf.buildinfo
 50af065f8ff93703be799c3b45ecae73d8e5f158 1943924 r-mathlib_3.6.1-5_armhf.deb
Checksums-Sha256:
 514c735e4a59acb0b1b6fee81b6ad73728867ac0f40e05e4638c0f758bfac512 6401884 r-base-core-dbg_3.6.1-5_armhf.deb
 0ecde48637d40d745c69ffad1642789bd03d2c056eec226309a66e0e2b8495bb 24348508 r-base-core_3.6.1-5_armhf.deb
 ad98cb4280009fa78ddc4de67b7e0a2d49ff2c824029bd8d814b8f7e66392bbf 13331 r-base_3.6.1-5_armhf.buildinfo
 ccda28a5efe5b4bf16fe52f052769d5d684c263cc72e8983d707ce1d5bd79f2b 1943924 r-mathlib_3.6.1-5_armhf.deb
Files:
 c54db8167212376958154c6cfa3e202f 6401884 debug optional r-base-core-dbg_3.6.1-5_armhf.deb
 1d759ca1fcefe32b57e9ffad0582e217 24348508 gnu-r optional r-base-core_3.6.1-5_armhf.deb
 45d933c21c20b81023d2d6090a77dbae 13331 gnu-r optional r-base_3.6.1-5_armhf.buildinfo
 c951f404d70e1284164ba95fcfae4425 1943924 gnu-r optional r-mathlib_3.6.1-5_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: armhf
Version: 3.6.1-5
Checksums-Md5:
 c54db8167212376958154c6cfa3e202f 6401884 r-base-core-dbg_3.6.1-5_armhf.deb
 1d759ca1fcefe32b57e9ffad0582e217 24348508 r-base-core_3.6.1-5_armhf.deb
 c951f404d70e1284164ba95fcfae4425 1943924 r-mathlib_3.6.1-5_armhf.deb
Checksums-Sha1:
 e35d538fbe04ff454303cfbd934e099ae0fdff0b 6401884 r-base-core-dbg_3.6.1-5_armhf.deb
 ab4c3837c68f85235b3a7eee2d7e0262c20cb7ab 24348508 r-base-core_3.6.1-5_armhf.deb
 50af065f8ff93703be799c3b45ecae73d8e5f158 1943924 r-mathlib_3.6.1-5_armhf.deb
Checksums-Sha256:
 514c735e4a59acb0b1b6fee81b6ad73728867ac0f40e05e4638c0f758bfac512 6401884 r-base-core-dbg_3.6.1-5_armhf.deb
 0ecde48637d40d745c69ffad1642789bd03d2c056eec226309a66e0e2b8495bb 24348508 r-base-core_3.6.1-5_armhf.deb
 ccda28a5efe5b4bf16fe52f052769d5d684c263cc72e8983d707ce1d5bd79f2b 1943924 r-mathlib_3.6.1-5_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Wed, 25 Sep 2019 07:57:49 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-9),
 autotools-dev (= 20180224.1),
 base-files (= 11+rpi1),
 base-passwd (= 3.5.46),
 bash (= 5.0-4),
 bash-completion (= 1:2.8-6),
 binutils (= 2.32.51.20190909-1+rpi1),
 binutils-arm-linux-gnueabihf (= 2.32.51.20190909-1+rpi1),
 binutils-common (= 2.32.51.20190909-1+rpi1),
 bison (= 2:3.4.1+dfsg-4),
 bsdmainutils (= 11.1.2),
 bsdutils (= 1:2.34-0.1),
 build-essential (= 12.8),
 bzip2 (= 1.0.8-2),
 ca-certificates (= 20190110),
 ca-certificates-java (= 20190909),
 coreutils (= 8.30-3),
 cpp (= 4:9.2.1-3+rpi1),
 cpp-9 (= 9.2.1-8+rpi1),
 dash (= 0.5.10.2-6),
 debconf (= 1.5.73),
 debhelper (= 12.6.1),
 debianutils (= 4.9),
 default-jdk (= 2:1.11-72),
 default-jdk-headless (= 2:1.11-72),
 default-jre (= 2:1.11-72),
 default-jre-headless (= 2:1.11-72),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.6.0-1),
 diffutils (= 1:3.7-3),
 dpkg (= 1.19.7),
 dpkg-dev (= 1.19.7),
 dwz (= 0.13-1),
 fdisk (= 2.34-0.1),
 file (= 1:5.37-5),
 findutils (= 4.7.0-1),
 fontconfig (= 2.13.1-2),
 fontconfig-config (= 2.13.1-2),
 fonts-dejavu-core (= 2.37-1),
 fonts-lmodern (= 2.004.5-6),
 g++ (= 4:9.2.1-3+rpi1),
 g++-9 (= 9.2.1-8+rpi1),
 gcc (= 4:9.2.1-3+rpi1),
 gcc-9 (= 9.2.1-8+rpi1),
 gcc-9-base (= 9.2.1-8+rpi1),
 gettext (= 0.19.8.1-9),
 gettext-base (= 0.19.8.1-9),
 gfortran (= 4:9.2.1-3+rpi1),
 gfortran-9 (= 9.2.1-8+rpi1),
 gir1.2-freedesktop (= 1.58.3-2),
 gir1.2-glib-2.0 (= 1.58.3-2),
 gir1.2-harfbuzz-0.0 (= 2.6.1-3),
 gir1.2-pango-1.0 (= 1.42.4-7+b1),
 grep (= 3.3-1),
 groff-base (= 1.22.4-3),
 gzip (= 1.9-3),
 hostname (= 3.22),
 icu-devtools (= 63.2-2),
 init-system-helpers (= 1.57),
 intltool-debian (= 0.35.0+20060710.5),
 java-common (= 0.72),
 libacl1 (= 2.2.53-4),
 libarchive-zip-perl (= 1.65-1),
 libasan5 (= 9.2.1-8+rpi1),
 libasound2 (= 1.1.8-1),
 libasound2-data (= 1.1.8-1),
 libatomic1 (= 9.2.1-8+rpi1),
 libattr1 (= 1:2.4.48-4),
 libaudit-common (= 1:2.8.5-2),
 libaudit1 (= 1:2.8.5-2),
 libavahi-client3 (= 0.7-4+b2),
 libavahi-common-data (= 0.7-4+b2),
 libavahi-common3 (= 0.7-4+b2),
 libbinutils (= 2.32.51.20190909-1+rpi1),
 libblas-dev (= 3.8.0-2),
 libblas3 (= 3.8.0-2),
 libblkid-dev (= 2.34-0.1),
 libblkid1 (= 2.34-0.1),
 libbrotli1 (= 1.0.7-2),
 libbsd0 (= 0.10.0-1),
 libbz2-1.0 (= 1.0.8-2),
 libbz2-dev (= 1.0.8-2),
 libc-bin (= 2.29-1+rpi1),
 libc-dev-bin (= 2.29-1+rpi1),
 libc6 (= 2.29-1+rpi1),
 libc6-dev (= 2.29-1+rpi1),
 libcairo-gobject2 (= 1.16.0-4),
 libcairo-script-interpreter2 (= 1.16.0-4),
 libcairo2 (= 1.16.0-4),
 libcairo2-dev (= 1.16.0-4),
 libcap-ng0 (= 0.7.9-2),
 libcc1-0 (= 9.2.1-8+rpi1),
 libcom-err2 (= 1.45.3-4),
 libcroco3 (= 0.6.13-1),
 libcups2 (= 2.3.0-3+rpi1),
 libcurl4 (= 7.66.0-1),
 libcurl4-openssl-dev (= 7.66.0-1),
 libdatrie1 (= 0.2.12-3),
 libdb5.3 (= 5.3.28+dfsg1-0.6),
 libdbus-1-3 (= 1.12.16-1+b1),
 libdebconfclient0 (= 0.249),
 libdebhelper-perl (= 12.6.1),
 libdpkg-perl (= 1.19.7),
 libdrm-amdgpu1 (= 2.4.99-1+rpi1),
 libdrm-common (= 2.4.99-1+rpi1),
 libdrm-etnaviv1 (= 2.4.99-1+rpi1),
 libdrm-nouveau2 (= 2.4.99-1+rpi1),
 libdrm-radeon1 (= 2.4.99-1+rpi1),
 libdrm2 (= 2.4.99-1+rpi1),
 libedit2 (= 3.1-20190324-1),
 libelf1 (= 0.176-1.1),
 libexpat1 (= 2.2.7-2),
 libexpat1-dev (= 2.2.7-2),
 libfdisk1 (= 2.34-0.1),
 libffi-dev (= 3.2.1-9),
 libffi6 (= 3.2.1-9),
 libfile-stripnondeterminism-perl (= 1.6.0-1),
 libfontconfig1 (= 2.13.1-2),
 libfontconfig1-dev (= 2.13.1-2),
 libfontenc1 (= 1:1.1.3-1),
 libfreetype6 (= 2.9.1-4),
 libfreetype6-dev (= 2.9.1-4),
 libfribidi-dev (= 1.0.5-3.1),
 libfribidi0 (= 1.0.5-3.1),
 libgcc-9-dev (= 9.2.1-8+rpi1),
 libgcc1 (= 1:9.2.1-8+rpi1),
 libgcrypt20 (= 1.8.5-2),
 libgdbm-compat4 (= 1.18.1-5),
 libgdbm6 (= 1.18.1-5),
 libgfortran-9-dev (= 9.2.1-8+rpi1),
 libgfortran5 (= 9.2.1-8+rpi1),
 libgif7 (= 5.1.4-3),
 libgirepository-1.0-1 (= 1.58.3-2),
 libgl1 (= 1.1.0-1),
 libgl1-mesa-dri (= 19.1.6-1),
 libglapi-mesa (= 19.1.6-1),
 libglib2.0-0 (= 2.60.6-2),
 libglib2.0-bin (= 2.60.6-2),
 libglib2.0-data (= 2.60.6-2),
 libglib2.0-dev (= 2.60.6-2),
 libglib2.0-dev-bin (= 2.60.6-2),
 libglvnd0 (= 1.1.0-1),
 libglx-mesa0 (= 19.1.6-1),
 libglx0 (= 1.1.0-1),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgnutls30 (= 3.6.9-5),
 libgomp1 (= 9.2.1-8+rpi1),
 libgpg-error0 (= 1.36-7),
 libgraphite2-3 (= 1.3.13-8),
 libgraphite2-dev (= 1.3.13-8),
 libgssapi-krb5-2 (= 1.17-6+b1),
 libharfbuzz-dev (= 2.6.1-3),
 libharfbuzz-gobject0 (= 2.6.1-3),
 libharfbuzz-icu0 (= 2.6.1-3),
 libharfbuzz0b (= 2.6.1-3),
 libhogweed4 (= 3.4.1-1),
 libice-dev (= 2:1.0.9-2),
 libice6 (= 2:1.0.9-2),
 libicu-dev (= 63.2-2),
 libicu63 (= 63.2-2),
 libidn2-0 (= 2.2.0-2),
 libisl21 (= 0.21-2),
 libjbig-dev (= 2.1-3.1+b2),
 libjbig0 (= 2.1-3.1+b2),
 libjpeg-dev (= 1:1.5.2-2),
 libjpeg62-turbo (= 1:1.5.2-2+b1),
 libjpeg62-turbo-dev (= 1:1.5.2-2+b1),
 libk5crypto3 (= 1.17-6+b1),
 libkeyutils1 (= 1.6-6),
 libkpathsea6 (= 2019.20190605.51237-3),
 libkrb5-3 (= 1.17-6+b1),
 libkrb5support0 (= 1.17-6+b1),
 liblapack-dev (= 3.8.0-2),
 liblapack3 (= 3.8.0-2),
 liblcms2-2 (= 2.9-3),
 libldap-2.4-2 (= 2.4.48+dfsg-1),
 libldap-common (= 2.4.48+dfsg-1),
 libllvm8 (= 1:8.0.1~+rc4-1+rpi1),
 liblz4-1 (= 1.8.3-1),
 liblzma-dev (= 5.2.4-1),
 liblzma5 (= 5.2.4-1),
 liblzo2-2 (= 2.10-0.1),
 libmagic-mgc (= 1:5.37-5),
 libmagic1 (= 1:5.37-5),
 libmime-charset-perl (= 1.012.2-1),
 libmount-dev (= 2.34-0.1),
 libmount1 (= 2.34-0.1),
 libmpc3 (= 1.1.0-1),
 libmpdec2 (= 2.4.2-2),
 libmpfr6 (= 4.0.2-1),
 libncurses-dev (= 6.1+20190803-1),
 libncurses5-dev (= 6.1+20190803-1),
 libncurses6 (= 6.1+20190803-1),
 libncursesw6 (= 6.1+20190803-1),
 libnettle6 (= 3.4.1-1),
 libnghttp2-14 (= 1.39.2-1),
 libnspr4 (= 2:4.21-2),
 libnss3 (= 2:3.45-1),
 libp11-kit0 (= 0.23.16.1-2),
 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
 libpam-runtime (= 1.3.1-5),
 libpam0g (= 1.3.1-5),
 libpango-1.0-0 (= 1.42.4-7+b1),
 libpango1.0-dev (= 1.42.4-7+b1),
 libpangocairo-1.0-0 (= 1.42.4-7+b1),
 libpangoft2-1.0-0 (= 1.42.4-7+b1),
 libpangoxft-1.0-0 (= 1.42.4-7+b1),
 libpaper-utils (= 1.1.28),
 libpaper1 (= 1.1.28),
 libpcre16-3 (= 2:8.39-12),
 libpcre2-16-0 (= 10.32-5),
 libpcre2-32-0 (= 10.32-5),
 libpcre2-8-0 (= 10.32-5),
 libpcre2-dev (= 10.32-5),
 libpcre2-posix0 (= 10.32-5),
 libpcre3 (= 2:8.39-12),
 libpcre3-dev (= 2:8.39-12),
 libpcre32-3 (= 2:8.39-12),
 libpcrecpp0v5 (= 2:8.39-12),
 libpcsclite1 (= 1.8.25-2),
 libperl5.28 (= 5.28.1-6),
 libpipeline1 (= 1.5.1-2),
 libpixman-1-0 (= 0.36.0-1),
 libpixman-1-dev (= 0.36.0-1),
 libpng-dev (= 1.6.37-1),
 libpng16-16 (= 1.6.37-1),
 libpsl5 (= 0.20.2-2),
 libptexenc1 (= 2019.20190605.51237-3),
 libpthread-stubs0-dev (= 0.4-1),
 libpython-stdlib (= 2.7.16-1),
 libpython2-stdlib (= 2.7.16-1),
 libpython2.7-minimal (= 2.7.16-4),
 libpython2.7-stdlib (= 2.7.16-4),
 libpython3-stdlib (= 3.7.3-1),
 libpython3.7-minimal (= 3.7.4-4),
 libpython3.7-stdlib (= 3.7.4-4),
 libreadline-dev (= 8.0-3),
 libreadline8 (= 8.0-3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2),
 libsasl2-2 (= 2.1.27+dfsg-1+b1),
 libsasl2-modules-db (= 2.1.27+dfsg-1+b1),
 libseccomp2 (= 2.4.1-2+rpi1),
 libselinux1 (= 2.9-2),
 libselinux1-dev (= 2.9-2),
 libsensors-config (= 1:3.5.0-3),
 libsensors5 (= 1:3.5.0-3),
 libsepol1 (= 2.9-2),
 libsepol1-dev (= 2.9-2),
 libsigsegv2 (= 2.12-2),
 libsm-dev (= 2:1.2.3-1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.34-0.1),
 libsombok3 (= 2.4.0-2),
 libsqlite3-0 (= 3.29.0-2),
 libssh2-1 (= 1.8.0-2.1),
 libssl1.1 (= 1.1.1c-1),
 libstdc++-9-dev (= 9.2.1-8+rpi1),
 libstdc++6 (= 9.2.1-8+rpi1),
 libsub-override-perl (= 0.09-2),
 libsynctex2 (= 2019.20190605.51237-3),
 libsystemd0 (= 242-7+rpi1),
 libtasn1-6 (= 4.14-2),
 libtcl8.6 (= 8.6.9+dfsg-2),
 libteckit0 (= 2.5.8+ds2-5),
 libtexlua53 (= 2019.20190605.51237-3),
 libtexluajit2 (= 2019.20190605.51237-3),
 libtext-unidecode-perl (= 1.30-1),
 libthai-data (= 0.1.28-3),
 libthai0 (= 0.1.28-3),
 libtiff-dev (= 4.0.10+git190903-1),
 libtiff5 (= 4.0.10+git190903-1),
 libtiff5-dev (= 4.0.10+git190903-1),
 libtiffxx5 (= 4.0.10+git190903-1),
 libtinfo5 (= 6.1+20190803-1),
 libtinfo6 (= 6.1+20190803-1),
 libtk8.6 (= 8.6.9-2),
 libtool (= 2.4.6-11),
 libubsan1 (= 9.2.1-8+rpi1),
 libuchardet0 (= 0.0.6-3),
 libudev1 (= 242-7+rpi1),
 libunicode-linebreak-perl (= 0.0.20190101-1),
 libunistring2 (= 0.9.10-2),
 libunwind8 (= 1.2.1-9),
 libuuid1 (= 2.34-0.1),
 libwebp6 (= 0.6.1-2),
 libx11-6 (= 2:1.6.8-1),
 libx11-data (= 2:1.6.8-1),
 libx11-dev (= 2:1.6.8-1),
 libx11-xcb1 (= 2:1.6.8-1),
 libxau-dev (= 1:1.0.8-1+b2),
 libxau6 (= 1:1.0.8-1+b2),
 libxaw7 (= 2:1.0.13-1),
 libxcb-dri2-0 (= 1.13.1-2),
 libxcb-dri3-0 (= 1.13.1-2),
 libxcb-glx0 (= 1.13.1-2),
 libxcb-present0 (= 1.13.1-2),
 libxcb-render0 (= 1.13.1-2),
 libxcb-render0-dev (= 1.13.1-2),
 libxcb-shm0 (= 1.13.1-2),
 libxcb-shm0-dev (= 1.13.1-2),
 libxcb-sync1 (= 1.13.1-2),
 libxcb1 (= 1.13.1-2),
 libxcb1-dev (= 1.13.1-2),
 libxdamage1 (= 1:1.1.5-1),
 libxdmcp-dev (= 1:1.1.2-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext-dev (= 2:1.3.3-1+b2),
 libxext6 (= 2:1.3.3-1+b2),
 libxfixes3 (= 1:5.0.3-1),
 libxfont2 (= 1:2.0.3-1),
 libxft-dev (= 2.3.2-2),
 libxft2 (= 2.3.2-2),
 libxi6 (= 2:1.7.9-1),
 libxkbfile1 (= 1:1.0.9-2),
 libxml-libxml-perl (= 2.0134+dfsg-1),
 libxml-namespacesupport-perl (= 1.12-1),
 libxml-sax-base-perl (= 1.09-1),
 libxml-sax-perl (= 1.02+dfsg-1),
 libxml2 (= 2.9.4+dfsg1-7+b2),
 libxmu6 (= 2:1.1.2-2),
 libxmuu1 (= 2:1.1.2-2),
 libxpm4 (= 1:3.5.12-1),
 libxrender-dev (= 1:0.9.10-1),
 libxrender1 (= 1:0.9.10-1),
 libxshmfence1 (= 1.3-1),
 libxss-dev (= 1:1.2.3-1),
 libxss1 (= 1:1.2.3-1),
 libxt-dev (= 1:1.1.5-1),
 libxt6 (= 1:1.1.5-1),
 libxtst6 (= 2:1.2.3-1),
 libxxf86vm1 (= 1:1.1.4-1+b2),
 libzstd1 (= 1.4.3+dfsg-1+rpi1),
 libzzip-0-13 (= 0.13.62-3.2),
 linux-libc-dev (= 4.18.20-2+rpi1+b1),
 login (= 1:4.7-2),
 lsb-base (= 11.1.0+rpi1),
 m4 (= 1.4.18-2),
 make (= 4.2.1-1.2),
 man-db (= 2.8.7-3),
 mawk (= 1.3.3-17),
 mime-support (= 3.63),
 mpack (= 1.6-8.2),
 ncurses-base (= 6.1+20190803-1),
 ncurses-bin (= 6.1+20190803-1),
 openjdk-11-jdk (= 11.0.5+6-2),
 openjdk-11-jdk-headless (= 11.0.5+6-2),
 openjdk-11-jre (= 11.0.5+6-2),
 openjdk-11-jre-headless (= 11.0.5+6-2),
 openssl (= 1.1.1c-1),
 pango1.0-tools (= 1.42.4-7+b1),
 patch (= 2.7.6-6),
 perl (= 5.28.1-6),
 perl-base (= 5.28.1-6),
 perl-modules-5.28 (= 5.28.1-6),
 pkg-config (= 0.29-6),
 po-debconf (= 1.0.21),
 preview-latex-style (= 11.91-2),
 python (= 2.7.16-1),
 python-minimal (= 2.7.16-1),
 python2 (= 2.7.16-1),
 python2-minimal (= 2.7.16-1),
 python2.7 (= 2.7.16-4),
 python2.7-minimal (= 2.7.16-4),
 python3 (= 3.7.3-1),
 python3-distutils (= 3.7.4-3),
 python3-lib2to3 (= 3.7.4-3),
 python3-minimal (= 3.7.3-1),
 python3.7 (= 3.7.4-4),
 python3.7-minimal (= 3.7.4-4),
 readline-common (= 8.0-3),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12),
 sysvinit-utils (= 2.96~beta-1),
 t1utils (= 1.41-3),
 tar (= 1.30+dfsg-6),
 tcl8.6 (= 8.6.9+dfsg-2),
 tcl8.6-dev (= 8.6.9+dfsg-2),
 tex-common (= 6.12),
 texinfo (= 6.6.0.dfsg.1-2),
 texlive-base (= 2019.20190830-1),
 texlive-binaries (= 2019.20190605.51237-3),
 texlive-extra-utils (= 2019.20190830-1),
 texlive-fonts-extra (= 2019.20190830-1),
 texlive-fonts-recommended (= 2019.20190830-1),
 texlive-latex-base (= 2019.20190830-1),
 texlive-latex-extra (= 2019.20190830-1),
 texlive-latex-recommended (= 2019.20190830-1),
 texlive-pictures (= 2019.20190830-1),
 texlive-plain-generic (= 2019.20190830-1),
 tk8.6 (= 8.6.9-2),
 tk8.6-dev (= 8.6.9-2),
 tzdata (= 2019c-1),
 ucf (= 3.0038+nmu1),
 util-linux (= 2.34-0.1),
 uuid-dev (= 2.34-0.1),
 x11-common (= 1:7.7+19),
 x11-xkb-utils (= 7.7+4),
 x11proto-core-dev (= 2018.4-4),
 x11proto-dev (= 2018.4-4),
 x11proto-scrnsaver-dev (= 2018.4-4),
 x11proto-xext-dev (= 2018.4-4),
 xauth (= 1:1.0.10-1),
 xdg-utils (= 1.1.3-1),
 xfonts-base (= 1:1.0.5),
 xfonts-encodings (= 1:1.0.4-2),
 xfonts-utils (= 1:7.7+6),
 xkb-data (= 2.26-2),
 xorg-sgml-doctools (= 1:1.11-1),
 xserver-common (= 2:1.20.4-1),
 xtrans-dev (= 1.3.5-1),
 xvfb (= 2:1.20.4-1),
 xz-utils (= 5.2.4-1),
 zlib1g (= 1:1.2.11.dfsg-1),
 zlib1g-dev (= 1:1.2.11.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LC_ALL="POSIX"
 SOURCE_DATE_EPOCH="1568947330"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-base-core-dbg_3.6.1-5_armhf.deb
---------------------------------

 new Debian package, version 2.0.
 size 6401884 bytes: control archive=2260 bytes.
    2557 bytes,    39 lines      control              
    2249 bytes,    22 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.6.1-5
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 6730
 Depends: r-base-core (= 3.6.1-5), r-base-dev (= 3.6.1-5)
 Section: debug
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.
 Build-Ids: 07815c6bc0bdfe4f55dfb2dc5d3c3e275c7b4164 1142e69a1870e5cec1c2a3691ec754397dbc1b44 167f59ebfea9a96de05c111afedd72e291763ebe 2cca954adc371d30a3ae75bbf501eff58b13cef9 34aa2d456ebdec263a1fd80f9cd4105abf0fba01 395e85378a52463cd8b25ff019a5e34a94e240ad 50cbec1774411cccd34c5cbd315e83b969564f42 616d8f80e1be55553e2dfa4b6e4b38797057dfc6 84fcbbdbfea9ac1faae53f7a485d7dcdbda5a6ec a07c37664b822e538a49205cea80c0e0ee0c2eb0 ab2af687a4b8f56b9d6a24bbbb60d8ae13b384d7 c06c9088667613977ed18201bacce61d4bc3b4f6 d243147a75b043660a668eafe6d32817069fa419 d55b2dab1d5120e3c7d4809d8398ec9e8dafdada d90daa3fd4d69db1f47ef92e16965dd65edae25a de2df40ff2951767d053a563f40e146c43bb5041 e2fcf4a068ae7974154461cae3171053d1ef26cf f44442f508a86f53753d9cfabfbe88703820fd9e ffdd9616a559fce867aec36252f9bcb9dae3e40b

drwxr-xr-x root/root         0 2019-09-20 02:42 ./
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/07/
-rw-r--r-- root/root    257828 2019-09-20 02:42 ./usr/lib/debug/.build-id/07/815c6bc0bdfe4f55dfb2dc5d3c3e275c7b4164.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/11/
-rw-r--r-- root/root     68324 2019-09-20 02:42 ./usr/lib/debug/.build-id/11/42e69a1870e5cec1c2a3691ec754397dbc1b44.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root     75192 2019-09-20 02:42 ./usr/lib/debug/.build-id/16/7f59ebfea9a96de05c111afedd72e291763ebe.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root    226804 2019-09-20 02:42 ./usr/lib/debug/.build-id/2c/ca954adc371d30a3ae75bbf501eff58b13cef9.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/34/
-rw-r--r-- root/root     76684 2019-09-20 02:42 ./usr/lib/debug/.build-id/34/aa2d456ebdec263a1fd80f9cd4105abf0fba01.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/39/
-rw-r--r-- root/root     12476 2019-09-20 02:42 ./usr/lib/debug/.build-id/39/5e85378a52463cd8b25ff019a5e34a94e240ad.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root     12348 2019-09-20 02:42 ./usr/lib/debug/.build-id/50/cbec1774411cccd34c5cbd315e83b969564f42.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/61/
-rw-r--r-- root/root    126292 2019-09-20 02:42 ./usr/lib/debug/.build-id/61/6d8f80e1be55553e2dfa4b6e4b38797057dfc6.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root     37956 2019-09-20 02:42 ./usr/lib/debug/.build-id/84/fcbbdbfea9ac1faae53f7a485d7dcdbda5a6ec.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/a0/
-rw-r--r-- root/root    760600 2019-09-20 02:42 ./usr/lib/debug/.build-id/a0/7c37664b822e538a49205cea80c0e0ee0c2eb0.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root    369332 2019-09-20 02:42 ./usr/lib/debug/.build-id/ab/2af687a4b8f56b9d6a24bbbb60d8ae13b384d7.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root     55096 2019-09-20 02:42 ./usr/lib/debug/.build-id/c0/6c9088667613977ed18201bacce61d4bc3b4f6.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/d2/
-rw-r--r-- root/root     55068 2019-09-20 02:42 ./usr/lib/debug/.build-id/d2/43147a75b043660a668eafe6d32817069fa419.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/d5/
-rw-r--r-- root/root   3971112 2019-09-20 02:42 ./usr/lib/debug/.build-id/d5/5b2dab1d5120e3c7d4809d8398ec9e8dafdada.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/d9/
-rw-r--r-- root/root    167004 2019-09-20 02:42 ./usr/lib/debug/.build-id/d9/0daa3fd4d69db1f47ef92e16965dd65edae25a.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root    145648 2019-09-20 02:42 ./usr/lib/debug/.build-id/de/2df40ff2951767d053a563f40e146c43bb5041.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root    146428 2019-09-20 02:42 ./usr/lib/debug/.build-id/e2/fcf4a068ae7974154461cae3171053d1ef26cf.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/f4/
-rw-r--r-- root/root    112768 2019-09-20 02:42 ./usr/lib/debug/.build-id/f4/4442f508a86f53753d9cfabfbe88703820fd9e.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root      7100 2019-09-20 02:42 ./usr/lib/debug/.build-id/ff/dd9616a559fce867aec36252f9bcb9dae3e40b.debug
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core-dbg/
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz
-rw-r--r-- root/root     32828 2019-09-20 02:42 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz
-rw-r--r-- root/root    109826 2019-09-20 02:42 ./usr/share/doc/r-base-core-dbg/changelog.gz
-rw-r--r-- root/root     20761 2019-03-05 11:56 ./usr/share/doc/r-base-core-dbg/copyright
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/overrides/


r-base-core_3.6.1-5_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 24348508 bytes: control archive=24156 bytes.
      93 bytes,     5 lines      conffiles            
    3489 bytes,    45 lines      control              
   73444 bytes,   932 lines      md5sums              
    2426 bytes,    68 lines   *  postinst             #!/bin/sh
     207 bytes,     5 lines   *  postrm               #!/bin/sh
     857 bytes,    37 lines   *  preinst              #!/bin/sh
     879 bytes,    29 lines   *  prerm                #!/bin/sh
 Package: r-base-core
 Source: r-base
 Version: 3.6.1-5
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 37242
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.29), libcairo2 (>= 1.6.0), libcurl4 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu63 (>= 63.1-1~), libjpeg62-turbo (>= 1.3.1), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3, libpng16-16 (>= 1.6.2-1), libreadline8 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Breaks: r-bioc-graph (<< 1.62.0-1~), r-cran-bbmle (<< 1.0.20-5~), r-cran-biocmanager (<< 1.30.4+dfsg-2~), r-cran-caret (<< 6.0-84-2~), r-cran-cmprsk (<< 2.2-8-1~), r-cran-coin (<< 1.3-0-1~), r-cran-dendextend (<< 1.12.0+dfsg-1~), r-cran-fields (<< 9.8-3-1~), r-cran-filehash (<< 2.4-2-2~), r-cran-future (<< 1.14.0+dfsg-1~), r-cran-genetics (<< 1.3.8.1.2-1~), r-cran-haplo.stats (<< 1.7.9-4~), r-cran-igraph (<< 1.2.4.1-1~), r-cran-lava (<< 1.6.5-1~), r-cran-libcoin (<< 1.0-4-1~), r-cran-msm (<< 1.6.7-1~), r-cran-permute (<< 0.9-5-1~), r-cran-phangorn (<< 2.5.5-1~), r-cran-popepi (<< 0.4.7-1~), r-cran-recipes (<< 0.1.6-1~), r-cran-sp (<< 1:1.3-1-2~), r-cran-spam (<< 2.2-2-1~), r-cran-units (<< 0.6-3-1~), r-cran-vegan (<< 2.5-5+dfsg-1~), r-cran-zelig (<< 5.1.6.1-1~)
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-api-3.5, r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2019-09-20 02:42 ./
drwxr-xr-x root/root         0 2019-09-20 02:42 ./etc/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./etc/R/
-rw-r--r-- root/root      8372 2019-09-20 02:42 ./etc/R/Makeconf
-rw-r--r-- root/root      1640 2019-09-20 02:42 ./etc/R/Renviron.site
-rw-r--r-- root/root       988 2019-09-20 02:42 ./etc/R/Rprofile.site
-rw-r--r-- root/root       789 2019-09-20 02:42 ./etc/R/ldpaths
-rw-r--r-- root/root      1095 2019-09-20 02:42 ./etc/R/repositories
drwxr-xr-x root/root         0 2019-09-20 02:42 ./etc/ld.so.conf.d/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/bin/
-rwxr-xr-x root/root      8818 2019-09-20 02:42 ./usr/bin/R
-rwxr-xr-x root/root      9784 2019-09-20 02:42 ./usr/bin/Rscript
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
-rw-r--r-- root/root        46 2019-09-20 02:42 ./usr/lib/R/SVN-REVISION
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/bin/
-rwxr-xr-x root/root      1837 2019-09-20 02:42 ./usr/lib/R/bin/BATCH
-rwxr-xr-x root/root      2168 2019-09-20 02:42 ./usr/lib/R/bin/COMPILE
-rwxr-xr-x root/root       823 2019-09-20 02:42 ./usr/lib/R/bin/INSTALL
-rwxr-xr-x root/root      1324 2019-09-20 02:42 ./usr/lib/R/bin/LINK
-rwxr-xr-x root/root      8818 2019-09-20 02:42 ./usr/lib/R/bin/R
-rwxr-xr-x root/root       158 2019-09-20 02:42 ./usr/lib/R/bin/REMOVE
-rwxr-xr-x root/root      1378 2019-09-20 02:42 ./usr/lib/R/bin/Rcmd
-rwxr-xr-x root/root       316 2019-09-20 02:42 ./usr/lib/R/bin/Rd2pdf
-rwxr-xr-x root/root       359 2019-09-20 02:42 ./usr/lib/R/bin/Rdconv
-rwxr-xr-x root/root       258 2019-09-20 02:42 ./usr/lib/R/bin/Rdiff
-rwxr-xr-x root/root       310 2019-09-20 02:42 ./usr/lib/R/bin/Rprof
-rwxr-xr-x root/root      9784 2019-09-20 02:42 ./usr/lib/R/bin/Rscript
-rwxr-xr-x root/root       155 2019-09-20 02:42 ./usr/lib/R/bin/SHLIB
-rwxr-xr-x root/root       318 2019-09-20 02:42 ./usr/lib/R/bin/Stangle
-rwxr-xr-x root/root       316 2019-09-20 02:42 ./usr/lib/R/bin/Sweave
-rwxr-xr-x root/root       350 2019-09-20 02:42 ./usr/lib/R/bin/build
-rwxr-xr-x root/root       317 2019-09-20 02:42 ./usr/lib/R/bin/check
-rwxr-xr-x root/root     11577 2019-09-20 02:42 ./usr/lib/R/bin/config
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/bin/exec/
-rwxr-xr-x root/root      5576 2019-09-20 02:42 ./usr/lib/R/bin/exec/R
-rwxr-xr-x root/root     14530 2019-09-20 02:42 ./usr/lib/R/bin/javareconf
-rwxr-xr-x root/root    350724 2019-09-20 02:42 ./usr/lib/R/bin/libtool
-rwxr-xr-x root/root      3496 2019-09-20 02:42 ./usr/lib/R/bin/mkinstalldirs
-rwxr-xr-x root/root       483 2019-09-20 02:42 ./usr/lib/R/bin/pager
-rwxr-xr-x root/root      4121 2019-09-20 02:42 ./usr/lib/R/bin/rtags
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
-rw-r--r-- root/root      1708 2019-09-20 02:42 ./usr/lib/R/etc/Renviron.orig
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site
-rw-r--r-- root/root      2011 2019-09-20 02:42 ./usr/lib/R/etc/Renviron.ucf
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
-rw-r--r-- root/root       234 2019-09-20 02:42 ./usr/lib/R/etc/javaconf
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/R/etc/repositories -> /etc/R/repositories
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/lib/
-rw-r--r-- root/root   2842748 2019-09-20 02:42 ./usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/
-rw-r--r-- root/root       956 2019-09-20 02:42 ./usr/lib/R/library/base/CITATION
-rw-r--r-- root/root       286 2019-09-20 02:42 ./usr/lib/R/library/base/DESCRIPTION
-rw-r--r-- root/root     23968 2019-09-20 02:42 ./usr/lib/R/library/base/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/
-rw-r--r-- root/root     21723 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/Rd.rds
-rw-r--r-- root/root       266 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/demo.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/features.rds
-rw-r--r-- root/root     22513 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/hsearch.rds
-rw-r--r-- root/root     13026 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/links.rds
-rw-r--r-- root/root       519 2019-09-20 02:42 ./usr/lib/R/library/base/Meta/package.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/R/
-rw-r--r-- root/root      6074 2019-09-20 02:42 ./usr/lib/R/library/base/R/Rprofile
-rw-r--r-- root/root      5387 2019-09-20 02:42 ./usr/lib/R/library/base/R/base
-rw-r--r-- root/root   1029177 2019-09-20 02:42 ./usr/lib/R/library/base/R/base.rdb
-rw-r--r-- root/root     13457 2019-09-20 02:42 ./usr/lib/R/library/base/R/base.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/demo/
-rw-r--r-- root/root      1179 2019-09-20 02:42 ./usr/lib/R/library/base/demo/error.catching.R
-rw-r--r-- root/root      4798 2019-09-20 02:42 ./usr/lib/R/library/base/demo/is.things.R
-rw-r--r-- root/root      2115 2019-09-20 02:42 ./usr/lib/R/library/base/demo/recursion.R
-rw-r--r-- root/root      1560 2019-09-20 02:42 ./usr/lib/R/library/base/demo/scoping.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/help/
-rw-r--r-- root/root     33897 2019-09-20 02:42 ./usr/lib/R/library/base/help/AnIndex
-rw-r--r-- root/root     12141 2019-09-20 02:42 ./usr/lib/R/library/base/help/aliases.rds
-rw-r--r-- root/root   2164872 2019-09-20 02:42 ./usr/lib/R/library/base/help/base.rdb
-rw-r--r-- root/root      8992 2019-09-20 02:42 ./usr/lib/R/library/base/help/base.rdx
-rw-r--r-- root/root      3185 2019-09-20 02:42 ./usr/lib/R/library/base/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/base/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/compiler/
-rw-r--r-- root/root       283 2019-09-20 02:42 ./usr/lib/R/library/compiler/DESCRIPTION
-rw-r--r-- root/root        43 2019-09-20 02:42 ./usr/lib/R/library/compiler/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/
-rw-r--r-- root/root       324 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/features.rds
-rw-r--r-- root/root       393 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/hsearch.rds
-rw-r--r-- root/root       226 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/links.rds
-rw-r--r-- root/root       274 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/nsInfo.rds
-rw-r--r-- root/root       499 2019-09-20 02:42 ./usr/lib/R/library/compiler/Meta/package.rds
-rw-r--r-- root/root       127 2019-09-20 02:42 ./usr/lib/R/library/compiler/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/compiler/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/compiler/R/compiler
-rw-r--r-- root/root    197225 2019-09-20 02:42 ./usr/lib/R/library/compiler/R/compiler.rdb
-rw-r--r-- root/root      3578 2019-09-20 02:42 ./usr/lib/R/library/compiler/R/compiler.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/
-rw-r--r-- root/root       174 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/AnIndex
-rw-r--r-- root/root       164 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/aliases.rds
-rw-r--r-- root/root      8676 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/compiler.rdb
-rw-r--r-- root/root       168 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/compiler.rdx
-rw-r--r-- root/root       143 2019-09-20 02:42 ./usr/lib/R/library/compiler/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/compiler/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/datasets/
-rw-r--r-- root/root       275 2019-09-20 02:42 ./usr/lib/R/library/datasets/DESCRIPTION
-rw-r--r-- root/root      5688 2019-09-20 02:42 ./usr/lib/R/library/datasets/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/
-rw-r--r-- root/root      3668 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/Rd.rds
-rw-r--r-- root/root      2714 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/data.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/features.rds
-rw-r--r-- root/root      3368 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/hsearch.rds
-rw-r--r-- root/root      1413 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/links.rds
-rw-r--r-- root/root       201 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/nsInfo.rds
-rw-r--r-- root/root       492 2019-09-20 02:42 ./usr/lib/R/library/datasets/Meta/package.rds
-rw-r--r-- root/root        71 2019-09-20 02:42 ./usr/lib/R/library/datasets/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/datasets/data/
-rw-r--r-- root/root    117044 2019-09-20 02:42 ./usr/lib/R/library/datasets/data/Rdata.rdb
-rw-r--r-- root/root      1084 2019-09-20 02:42 ./usr/lib/R/library/datasets/data/Rdata.rds
-rw-r--r-- root/root      1551 2019-09-20 02:42 ./usr/lib/R/library/datasets/data/Rdata.rdx
-rw-r--r-- root/root      2122 2019-09-20 02:42 ./usr/lib/R/library/datasets/data/morley.tab
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/
-rw-r--r-- root/root      2036 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/AnIndex
-rw-r--r-- root/root       959 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/aliases.rds
-rw-r--r-- root/root    209026 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/datasets.rdb
-rw-r--r-- root/root      2037 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/datasets.rdx
-rw-r--r-- root/root       909 2019-09-20 02:42 ./usr/lib/R/library/datasets/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/datasets/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/
-rw-r--r-- root/root       420 2019-09-20 02:42 ./usr/lib/R/library/grDevices/DESCRIPTION
-rw-r--r-- root/root      4227 2019-09-20 02:42 ./usr/lib/R/library/grDevices/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/
-rw-r--r-- root/root      3265 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/Rd.rds
-rw-r--r-- root/root       152 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/demo.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/features.rds
-rw-r--r-- root/root      3329 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/hsearch.rds
-rw-r--r-- root/root      1698 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/links.rds
-rw-r--r-- root/root      1161 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/nsInfo.rds
-rw-r--r-- root/root       598 2019-09-20 02:42 ./usr/lib/R/library/grDevices/Meta/package.rds
-rw-r--r-- root/root      2521 2019-09-20 02:42 ./usr/lib/R/library/grDevices/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/grDevices/R/grDevices
-rw-r--r-- root/root    219703 2019-09-20 02:42 ./usr/lib/R/library/grDevices/R/grDevices.rdb
-rw-r--r-- root/root      2677 2019-09-20 02:42 ./usr/lib/R/library/grDevices/R/grDevices.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/
-rw-r--r-- root/root      8341 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ArialMT-Bold.afm.gz
-rw-r--r-- root/root      8291 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ArialMT-BoldItalic.afm.gz
-rw-r--r-- root/root      8343 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ArialMT-Italic.afm.gz
-rw-r--r-- root/root      8556 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ArialMT.afm.gz
-rw-r--r-- root/root      3037 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
-rw-r--r-- root/root      3126 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
-rw-r--r-- root/root      3031 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/CM_italic_10.afm.gz
-rw-r--r-- root/root      2935 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/CM_regular_10.afm.gz
-rw-r--r-- root/root      2237 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
-rw-r--r-- root/root      3967 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Courier-Bold.afm.gz
-rw-r--r-- root/root      4088 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz
-rw-r--r-- root/root      4082 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Courier-Oblique.afm.gz
-rw-r--r-- root/root      3961 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Courier.afm.gz
-rw-r--r-- root/root     12984 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
-rw-r--r-- root/root     13187 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz
-rw-r--r-- root/root     13803 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
-rw-r--r-- root/root     13624 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Helvetica.afm.gz
-rw-r--r-- root/root      1001 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/MustRead.html
-rw-r--r-- root/root       851 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/README
-rw-r--r-- root/root      3432 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Symbol.afm.gz
-rw-r--r-- root/root     12314 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Times-Bold.afm.gz
-rw-r--r-- root/root     11690 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz
-rw-r--r-- root/root     12641 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Times-Italic.afm.gz
-rw-r--r-- root/root     11829 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/Times-Roman.afm.gz
-rw-r--r-- root/root      2527 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ZapfDingbats.afm.gz
-rw-r--r-- root/root     10212 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/a010013l.afm.gz
-rw-r--r-- root/root     10035 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/a010015l.afm.gz
-rw-r--r-- root/root     10260 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/a010033l.afm.gz
-rw-r--r-- root/root     10177 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/a010035l.afm.gz
-rw-r--r-- root/root      4890 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/agd_____.afm.gz
-rw-r--r-- root/root      4965 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/agdo____.afm.gz
-rw-r--r-- root/root      5046 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/agw_____.afm.gz
-rw-r--r-- root/root      5126 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/agwo____.afm.gz
-rw-r--r-- root/root     10240 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/b018012l.afm.gz
-rw-r--r-- root/root     10074 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/b018015l.afm.gz
-rw-r--r-- root/root     10348 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/b018032l.afm.gz
-rw-r--r-- root/root     10346 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/b018035l.afm.gz
-rw-r--r-- root/root      4241 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/bkd_____.afm.gz
-rw-r--r-- root/root      4356 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/bkdi____.afm.gz
-rw-r--r-- root/root      4244 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/bkl_____.afm.gz
-rw-r--r-- root/root      4318 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/bkli____.afm.gz
-rw-r--r-- root/root     10330 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/c059013l.afm.gz
-rw-r--r-- root/root     10234 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/c059016l.afm.gz
-rw-r--r-- root/root     10527 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/c059033l.afm.gz
-rw-r--r-- root/root     10461 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/c059036l.afm.gz
-rw-r--r-- root/root      2924 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/cmbxti10.afm.gz
-rw-r--r-- root/root      2904 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/cmti10.afm.gz
-rw-r--r-- root/root      3960 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/cob_____.afm.gz
-rw-r--r-- root/root      4071 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/cobo____.afm.gz
-rw-r--r-- root/root      3959 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/com_____.afm.gz
-rw-r--r-- root/root      4079 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/coo_____.afm.gz
-rw-r--r-- root/root      4813 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hv______.afm.gz
-rw-r--r-- root/root      4678 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvb_____.afm.gz
-rw-r--r-- root/root      4820 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvbo____.afm.gz
-rw-r--r-- root/root      4797 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvn_____.afm.gz
-rw-r--r-- root/root      4662 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvnb____.afm.gz
-rw-r--r-- root/root      4813 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvnbo___.afm.gz
-rw-r--r-- root/root      4950 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvno____.afm.gz
-rw-r--r-- root/root      4964 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/hvo_____.afm.gz
-rw-r--r-- root/root     10204 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019003l.afm.gz
-rw-r--r-- root/root     10032 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019004l.afm.gz
-rw-r--r-- root/root     10471 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019023l.afm.gz
-rw-r--r-- root/root     10310 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019024l.afm.gz
-rw-r--r-- root/root     10082 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019043l.afm.gz
-rw-r--r-- root/root      9772 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019044l.afm.gz
-rw-r--r-- root/root     10271 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019063l.afm.gz
-rw-r--r-- root/root     10153 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n019064l.afm.gz
-rw-r--r-- root/root     10526 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n021003l.afm.gz
-rw-r--r-- root/root     10342 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n021004l.afm.gz
-rw-r--r-- root/root     10532 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n021023l.afm.gz
-rw-r--r-- root/root     10512 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n021024l.afm.gz
-rw-r--r-- root/root      5464 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n022003l.afm.gz
-rw-r--r-- root/root      5561 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n022004l.afm.gz
-rw-r--r-- root/root      5859 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n022023l.afm.gz
-rw-r--r-- root/root      5841 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/n022024l.afm.gz
-rw-r--r-- root/root      4268 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ncb_____.afm.gz
-rw-r--r-- root/root      4908 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ncbi____.afm.gz
-rw-r--r-- root/root      4506 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/nci_____.afm.gz
-rw-r--r-- root/root      4440 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/ncr_____.afm.gz
-rw-r--r-- root/root     10408 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/p052003l.afm.gz
-rw-r--r-- root/root     10217 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/p052004l.afm.gz
-rw-r--r-- root/root     10511 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/p052023l.afm.gz
-rw-r--r-- root/root     10268 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/p052024l.afm.gz
-rw-r--r-- root/root      4382 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/pob_____.afm.gz
-rw-r--r-- root/root      4419 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/pobi____.afm.gz
-rw-r--r-- root/root      4441 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/poi_____.afm.gz
-rw-r--r-- root/root      4473 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/por_____.afm.gz
-rw-r--r-- root/root      3370 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/s050000l.afm.gz
-rw-r--r-- root/root      3385 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/sy______.afm.gz
-rw-r--r-- root/root      4992 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/tib_____.afm.gz
-rw-r--r-- root/root      5089 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/tibi____.afm.gz
-rw-r--r-- root/root      5094 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/tii_____.afm.gz
-rw-r--r-- root/root      4970 2019-09-20 02:42 ./usr/lib/R/library/grDevices/afm/tir_____.afm.gz
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/demo/
-rw-r--r-- root/root      3757 2019-09-20 02:42 ./usr/lib/R/library/grDevices/demo/colors.R
-rw-r--r-- root/root      2588 2019-09-20 02:42 ./usr/lib/R/library/grDevices/demo/hclColors.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/
-rw-r--r-- root/root      2094 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/AdobeStd.enc
-rw-r--r-- root/root      2514 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/AdobeSym.enc
-rw-r--r-- root/root      2224 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/CP1250.enc
-rw-r--r-- root/root      2389 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/CP1251.enc
-rw-r--r-- root/root      2185 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/CP1253.enc
-rw-r--r-- root/root      2247 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/CP1257.enc
-rw-r--r-- root/root      2349 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/Cyrillic.enc
-rw-r--r-- root/root      2212 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/Greek.enc
-rw-r--r-- root/root      2213 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/ISOLatin1.enc
-rw-r--r-- root/root      2187 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/ISOLatin2.enc
-rw-r--r-- root/root      2272 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/ISOLatin7.enc
-rw-r--r-- root/root      2196 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/ISOLatin9.enc
-rw-r--r-- root/root      2290 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/KOI8-R.enc
-rw-r--r-- root/root      2308 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/KOI8-U.enc
-rw-r--r-- root/root      2262 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/MacRoman.enc
-rw-r--r-- root/root      2207 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/PDFDoc.enc
-rw-r--r-- root/root      2091 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/TeXtext.enc
-rw-r--r-- root/root      2311 2019-09-20 02:42 ./usr/lib/R/library/grDevices/enc/WinAnsi.enc
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/
-rw-r--r-- root/root      3186 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/AnIndex
-rw-r--r-- root/root      1420 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/aliases.rds
-rw-r--r-- root/root    377110 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/grDevices.rdb
-rw-r--r-- root/root      1691 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/grDevices.rdx
-rw-r--r-- root/root       759 2019-09-20 02:42 ./usr/lib/R/library/grDevices/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/icc/
-rw-r--r-- root/root      9521 2019-09-20 02:42 ./usr/lib/R/library/grDevices/icc/srgb
-rw-r--r-- root/root      2680 2019-09-20 02:42 ./usr/lib/R/library/grDevices/icc/srgb.flate
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grDevices/libs/
-rw-r--r-- root/root     30636 2019-09-20 02:42 ./usr/lib/R/library/grDevices/libs/cairo.so
-rw-r--r-- root/root    190572 2019-09-20 02:42 ./usr/lib/R/library/grDevices/libs/grDevices.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/
-rw-r--r-- root/root       357 2019-09-20 02:42 ./usr/lib/R/library/graphics/DESCRIPTION
-rw-r--r-- root/root      3773 2019-09-20 02:42 ./usr/lib/R/library/graphics/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/
-rw-r--r-- root/root      3202 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/Rd.rds
-rw-r--r-- root/root       285 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/demo.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/features.rds
-rw-r--r-- root/root      3258 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/hsearch.rds
-rw-r--r-- root/root      1387 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/links.rds
-rw-r--r-- root/root      1183 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/nsInfo.rds
-rw-r--r-- root/root       575 2019-09-20 02:42 ./usr/lib/R/library/graphics/Meta/package.rds
-rw-r--r-- root/root      2804 2019-09-20 02:42 ./usr/lib/R/library/graphics/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/graphics/R/graphics
-rw-r--r-- root/root    325060 2019-09-20 02:42 ./usr/lib/R/library/graphics/R/graphics.rdb
-rw-r--r-- root/root      1846 2019-09-20 02:42 ./usr/lib/R/library/graphics/R/graphics.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/
-rw-r--r-- root/root     19972 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/Hershey.R
-rw-r--r-- root/root     34519 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/Japanese.R
-rw-r--r-- root/root      5039 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/graphics.R
-rw-r--r-- root/root      1105 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/image.R
-rw-r--r-- root/root      2791 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/persp.R
-rw-r--r-- root/root      8666 2019-09-20 02:42 ./usr/lib/R/library/graphics/demo/plotmath.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/
-rw-r--r-- root/root      2557 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/AnIndex
-rw-r--r-- root/root      1064 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/aliases.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/
-rw-r--r-- root/root      2541 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/mai.pdf
-rw-r--r-- root/root      4667 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/mai.png
-rw-r--r-- root/root      3763 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/oma.pdf
-rw-r--r-- root/root      5114 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/oma.png
-rw-r--r-- root/root      4994 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/pch.pdf
-rw-r--r-- root/root      9287 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/pch.png
-rw-r--r-- root/root     27187 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/figures/pch.svg
-rw-r--r-- root/root    475974 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/graphics.rdb
-rw-r--r-- root/root      1672 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/graphics.rdx
-rw-r--r-- root/root       695 2019-09-20 02:42 ./usr/lib/R/library/graphics/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/graphics/libs/
-rw-r--r-- root/root    251816 2019-09-20 02:42 ./usr/lib/R/library/graphics/libs/graphics.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/
-rw-r--r-- root/root       435 2019-09-20 02:42 ./usr/lib/R/library/grid/DESCRIPTION
-rw-r--r-- root/root      5090 2019-09-20 02:42 ./usr/lib/R/library/grid/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/
-rw-r--r-- root/root      3633 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/features.rds
-rw-r--r-- root/root      3683 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/hsearch.rds
-rw-r--r-- root/root      2046 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/links.rds
-rw-r--r-- root/root      2204 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/nsInfo.rds
-rw-r--r-- root/root       661 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/package.rds
-rw-r--r-- root/root       625 2019-09-20 02:42 ./usr/lib/R/library/grid/Meta/vignette.rds
-rw-r--r-- root/root     13689 2019-09-20 02:42 ./usr/lib/R/library/grid/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/grid/R/grid
-rw-r--r-- root/root    492491 2019-09-20 02:42 ./usr/lib/R/library/grid/R/grid.rdb
-rw-r--r-- root/root      8917 2019-09-20 02:42 ./usr/lib/R/library/grid/R/grid.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/
-rw-r--r-- root/root      2211 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/DivByZero.txt
-rw-r--r-- root/root     58184 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/changes.txt
-rw-r--r-- root/root      4547 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/displaylist.R
-rw-r--r-- root/root      9796 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/displaylist.Rnw
-rw-r--r-- root/root    157265 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/displaylist.pdf
-rw-r--r-- root/root      4960 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/frame.R
-rw-r--r-- root/root     16260 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/frame.Rnw
-rw-r--r-- root/root    155863 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/frame.pdf
-rw-r--r-- root/root      7586 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grid.R
-rw-r--r-- root/root     25135 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grid.Rnw
-rw-r--r-- root/root    233629 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grid.pdf
-rw-r--r-- root/root     10912 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grobs.R
-rw-r--r-- root/root     19100 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grobs.Rnw
-rw-r--r-- root/root    107033 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/grobs.pdf
-rw-r--r-- root/root      7187 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/index.html
-rw-r--r-- root/root      3160 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/interactive.R
-rw-r--r-- root/root      4420 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/interactive.Rnw
-rw-r--r-- root/root     90739 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/interactive.pdf
-rw-r--r-- root/root      2624 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/locndimn.R
-rw-r--r-- root/root      4422 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/locndimn.Rnw
-rw-r--r-- root/root     89390 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/locndimn.pdf
-rw-r--r-- root/root       985 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/moveline.R
-rw-r--r-- root/root      2143 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/moveline.Rnw
-rw-r--r-- root/root     87138 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/moveline.pdf
-rw-r--r-- root/root      2226 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/nonfinite.R
-rw-r--r-- root/root      4520 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/nonfinite.Rnw
-rw-r--r-- root/root     79379 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/nonfinite.pdf
-rw-r--r-- root/root     16582 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/plotexample.R
-rw-r--r-- root/root     22649 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/plotexample.Rnw
-rw-r--r-- root/root    223937 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/plotexample.pdf
-rw-r--r-- root/root      6863 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/rotated.R
-rw-r--r-- root/root      5116 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/rotated.Rnw
-rw-r--r-- root/root    121737 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/rotated.pdf
-rw-r--r-- root/root      1054 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/saveload.R
-rw-r--r-- root/root      3874 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/saveload.Rnw
-rw-r--r-- root/root    133755 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/saveload.pdf
-rw-r--r-- root/root      4093 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/sharing.R
-rw-r--r-- root/root      3076 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/sharing.Rnw
-rw-r--r-- root/root     70700 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/sharing.pdf
-rw-r--r-- root/root      8880 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/viewports.R
-rw-r--r-- root/root     11209 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/viewports.Rnw
-rw-r--r-- root/root    162907 2019-09-20 02:42 ./usr/lib/R/library/grid/doc/viewports.pdf
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/help/
-rw-r--r-- root/root      5064 2019-09-20 02:42 ./usr/lib/R/library/grid/help/AnIndex
-rw-r--r-- root/root      1731 2019-09-20 02:42 ./usr/lib/R/library/grid/help/aliases.rds
-rw-r--r-- root/root    277731 2019-09-20 02:42 ./usr/lib/R/library/grid/help/grid.rdb
-rw-r--r-- root/root      2043 2019-09-20 02:42 ./usr/lib/R/library/grid/help/grid.rdx
-rw-r--r-- root/root       848 2019-09-20 02:42 ./usr/lib/R/library/grid/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/grid/libs/
-rw-r--r-- root/root     96108 2019-09-20 02:42 ./usr/lib/R/library/grid/libs/grid.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/
-rw-r--r-- root/root       549 2019-09-20 02:42 ./usr/lib/R/library/methods/DESCRIPTION
-rw-r--r-- root/root      5203 2019-09-20 02:42 ./usr/lib/R/library/methods/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/
-rw-r--r-- root/root      5785 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/features.rds
-rw-r--r-- root/root      5955 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/hsearch.rds
-rw-r--r-- root/root      4096 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/links.rds
-rw-r--r-- root/root      1792 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/nsInfo.rds
-rw-r--r-- root/root       720 2019-09-20 02:42 ./usr/lib/R/library/methods/Meta/package.rds
-rw-r--r-- root/root      5567 2019-09-20 02:42 ./usr/lib/R/library/methods/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/methods/R/methods
-rw-r--r-- root/root   1307970 2019-09-20 02:42 ./usr/lib/R/library/methods/R/methods.rdb
-rw-r--r-- root/root     14567 2019-09-20 02:42 ./usr/lib/R/library/methods/R/methods.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/help/
-rw-r--r-- root/root     14357 2019-09-20 02:42 ./usr/lib/R/library/methods/help/AnIndex
-rw-r--r-- root/root      4153 2019-09-20 02:42 ./usr/lib/R/library/methods/help/aliases.rds
-rw-r--r-- root/root    517705 2019-09-20 02:42 ./usr/lib/R/library/methods/help/methods.rdb
-rw-r--r-- root/root      2053 2019-09-20 02:42 ./usr/lib/R/library/methods/help/methods.rdx
-rw-r--r-- root/root       931 2019-09-20 02:42 ./usr/lib/R/library/methods/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/methods/libs/
-rw-r--r-- root/root     30416 2019-09-20 02:42 ./usr/lib/R/library/methods/libs/methods.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/
-rw-r--r-- root/root       524 2019-09-20 02:42 ./usr/lib/R/library/parallel/DESCRIPTION
-rw-r--r-- root/root       914 2019-09-20 02:42 ./usr/lib/R/library/parallel/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/
-rw-r--r-- root/root       987 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/features.rds
-rw-r--r-- root/root      1107 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/hsearch.rds
-rw-r--r-- root/root       523 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/links.rds
-rw-r--r-- root/root       652 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/nsInfo.rds
-rw-r--r-- root/root       686 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/package.rds
-rw-r--r-- root/root       221 2019-09-20 02:42 ./usr/lib/R/library/parallel/Meta/vignette.rds
-rw-r--r-- root/root      1371 2019-09-20 02:42 ./usr/lib/R/library/parallel/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/parallel/R/parallel
-rw-r--r-- root/root     98031 2019-09-20 02:42 ./usr/lib/R/library/parallel/R/parallel.rdb
-rw-r--r-- root/root      1814 2019-09-20 02:42 ./usr/lib/R/library/parallel/R/parallel.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/doc/
-rw-r--r-- root/root      1339 2019-09-20 02:42 ./usr/lib/R/library/parallel/doc/index.html
-rw-r--r-- root/root     11535 2019-09-20 02:42 ./usr/lib/R/library/parallel/doc/parallel.R
-rw-r--r-- root/root     38743 2019-09-20 02:42 ./usr/lib/R/library/parallel/doc/parallel.Rnw
-rw-r--r-- root/root    295961 2019-09-20 02:42 ./usr/lib/R/library/parallel/doc/parallel.pdf
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/
-rw-r--r-- root/root      1053 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/AnIndex
-rw-r--r-- root/root       468 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/aliases.rds
-rw-r--r-- root/root     75102 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/parallel.rdb
-rw-r--r-- root/root       455 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/parallel.rdx
-rw-r--r-- root/root       277 2019-09-20 02:42 ./usr/lib/R/library/parallel/help/paths.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/parallel/libs/
-rw-r--r-- root/root     22180 2019-09-20 02:42 ./usr/lib/R/library/parallel/libs/parallel.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/
-rw-r--r-- root/root       465 2019-09-20 02:42 ./usr/lib/R/library/splines/DESCRIPTION
-rw-r--r-- root/root       832 2019-09-20 02:42 ./usr/lib/R/library/splines/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/
-rw-r--r-- root/root       752 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/features.rds
-rw-r--r-- root/root       826 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/hsearch.rds
-rw-r--r-- root/root       345 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/links.rds
-rw-r--r-- root/root       600 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/nsInfo.rds
-rw-r--r-- root/root       673 2019-09-20 02:42 ./usr/lib/R/library/splines/Meta/package.rds
-rw-r--r-- root/root      1425 2019-09-20 02:42 ./usr/lib/R/library/splines/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/splines/R/splines
-rw-r--r-- root/root     53795 2019-09-20 02:42 ./usr/lib/R/library/splines/R/splines.rdb
-rw-r--r-- root/root       832 2019-09-20 02:42 ./usr/lib/R/library/splines/R/splines.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/help/
-rw-r--r-- root/root       541 2019-09-20 02:42 ./usr/lib/R/library/splines/help/AnIndex
-rw-r--r-- root/root       252 2019-09-20 02:42 ./usr/lib/R/library/splines/help/aliases.rds
-rw-r--r-- root/root       267 2019-09-20 02:42 ./usr/lib/R/library/splines/help/paths.rds
-rw-r--r-- root/root     40001 2019-09-20 02:42 ./usr/lib/R/library/splines/help/splines.rdb
-rw-r--r-- root/root       475 2019-09-20 02:42 ./usr/lib/R/library/splines/help/splines.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/splines/libs/
-rw-r--r-- root/root      9648 2019-09-20 02:42 ./usr/lib/R/library/splines/libs/splines.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/
-rw-r--r-- root/root      1552 2019-09-20 02:42 ./usr/lib/R/library/stats/COPYRIGHTS.modreg
-rw-r--r-- root/root       413 2019-09-20 02:42 ./usr/lib/R/library/stats/DESCRIPTION
-rw-r--r-- root/root     18782 2019-09-20 02:42 ./usr/lib/R/library/stats/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/
-rw-r--r-- root/root     12845 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/Rd.rds
-rw-r--r-- root/root       286 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/demo.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/features.rds
-rw-r--r-- root/root     13042 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/hsearch.rds
-rw-r--r-- root/root      6482 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/links.rds
-rw-r--r-- root/root      4426 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/nsInfo.rds
-rw-r--r-- root/root       683 2019-09-20 02:42 ./usr/lib/R/library/stats/Meta/package.rds
-rw-r--r-- root/root     16788 2019-09-20 02:42 ./usr/lib/R/library/stats/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/stats/R/stats
-rw-r--r-- root/root   1639490 2019-09-20 02:42 ./usr/lib/R/library/stats/R/stats.rdb
-rw-r--r-- root/root     10913 2019-09-20 02:42 ./usr/lib/R/library/stats/R/stats.rdx
-rw-r--r-- root/root       550 2019-09-20 02:42 ./usr/lib/R/library/stats/SOURCES.ts
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/demo/
-rw-r--r-- root/root       744 2019-09-20 02:42 ./usr/lib/R/library/stats/demo/glm.vr.R
-rw-r--r-- root/root      4993 2019-09-20 02:42 ./usr/lib/R/library/stats/demo/lm.glm.R
-rw-r--r-- root/root      3250 2019-09-20 02:42 ./usr/lib/R/library/stats/demo/nlm.R
-rw-r--r-- root/root      1282 2019-09-20 02:42 ./usr/lib/R/library/stats/demo/smooth.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/help/
-rw-r--r-- root/root     16076 2019-09-20 02:42 ./usr/lib/R/library/stats/help/AnIndex
-rw-r--r-- root/root      5399 2019-09-20 02:42 ./usr/lib/R/library/stats/help/aliases.rds
-rw-r--r-- root/root      2416 2019-09-20 02:42 ./usr/lib/R/library/stats/help/paths.rds
-rw-r--r-- root/root   1548596 2019-09-20 02:42 ./usr/lib/R/library/stats/help/stats.rdb
-rw-r--r-- root/root      6538 2019-09-20 02:42 ./usr/lib/R/library/stats/help/stats.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats/libs/
-rw-r--r-- root/root    566072 2019-09-20 02:42 ./usr/lib/R/library/stats/libs/stats.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats4/
-rw-r--r-- root/root       346 2019-09-20 02:42 ./usr/lib/R/library/stats4/DESCRIPTION
-rw-r--r-- root/root      1215 2019-09-20 02:42 ./usr/lib/R/library/stats4/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/
-rw-r--r-- root/root       811 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/features.rds
-rw-r--r-- root/root       924 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/hsearch.rds
-rw-r--r-- root/root       441 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/links.rds
-rw-r--r-- root/root       436 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/nsInfo.rds
-rw-r--r-- root/root       572 2019-09-20 02:42 ./usr/lib/R/library/stats4/Meta/package.rds
-rw-r--r-- root/root       694 2019-09-20 02:42 ./usr/lib/R/library/stats4/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats4/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/stats4/R/stats4
-rw-r--r-- root/root    113441 2019-09-20 02:42 ./usr/lib/R/library/stats4/R/stats4.rdb
-rw-r--r-- root/root      1089 2019-09-20 02:42 ./usr/lib/R/library/stats4/R/stats4.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/
-rw-r--r-- root/root      1120 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/AnIndex
-rw-r--r-- root/root       370 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/aliases.rds
-rw-r--r-- root/root       271 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/paths.rds
-rw-r--r-- root/root     31004 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/stats4.rdb
-rw-r--r-- root/root       474 2019-09-20 02:42 ./usr/lib/R/library/stats4/help/stats4.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/stats4/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/
-rw-r--r-- root/root       342 2019-09-20 02:42 ./usr/lib/R/library/tcltk/DESCRIPTION
-rw-r--r-- root/root       626 2019-09-20 02:42 ./usr/lib/R/library/tcltk/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/
-rw-r--r-- root/root      2399 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/Rd.rds
-rw-r--r-- root/root       287 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/demo.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/features.rds
-rw-r--r-- root/root      2553 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/hsearch.rds
-rw-r--r-- root/root      2137 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/links.rds
-rw-r--r-- root/root       487 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/nsInfo.rds
-rw-r--r-- root/root       567 2019-09-20 02:42 ./usr/lib/R/library/tcltk/Meta/package.rds
-rw-r--r-- root/root       980 2019-09-20 02:42 ./usr/lib/R/library/tcltk/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/R/
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/tcltk/R/tcltk
-rw-r--r-- root/root    101934 2019-09-20 02:42 ./usr/lib/R/library/tcltk/R/tcltk.rdb
-rw-r--r-- root/root      3497 2019-09-20 02:42 ./usr/lib/R/library/tcltk/R/tcltk.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/demo/
-rw-r--r-- root/root      5228 2019-09-20 02:42 ./usr/lib/R/library/tcltk/demo/tkcanvas.R
-rw-r--r-- root/root      3476 2019-09-20 02:42 ./usr/lib/R/library/tcltk/demo/tkdensity.R
-rw-r--r-- root/root      1229 2019-09-20 02:42 ./usr/lib/R/library/tcltk/demo/tkfaq.R
-rw-r--r-- root/root      2975 2019-09-20 02:42 ./usr/lib/R/library/tcltk/demo/tkttest.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/
-rw-r--r-- root/root       949 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/Tk-frontend.R
-rw-r--r-- root/root      2235 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/console.tcl
-rw-r--r-- root/root     39160 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/hierarchy.tcl
-rw-r--r-- root/root      1343 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/pkgIndex.tcl
-rw-r--r-- root/root     78634 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/progressbar.tcl
-rw-r--r-- root/root     17830 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util-dump.tcl
-rw-r--r-- root/root      5753 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util-expand.tcl
-rw-r--r-- root/root      2115 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util-number.tcl
-rw-r--r-- root/root      3600 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util-string.tcl
-rw-r--r-- root/root      7157 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util-tk.tcl
-rw-r--r-- root/root     23267 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/util.tcl
-rw-r--r-- root/root     32703 2019-09-20 02:42 ./usr/lib/R/library/tcltk/exec/widget.tcl
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/
-rw-r--r-- root/root      7436 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/AnIndex
-rw-r--r-- root/root      2133 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/aliases.rds
-rw-r--r-- root/root       293 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/paths.rds
-rw-r--r-- root/root     51481 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/tcltk.rdb
-rw-r--r-- root/root       514 2019-09-20 02:42 ./usr/lib/R/library/tcltk/help/tcltk.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tcltk/libs/
-rw-r--r-- root/root     26404 2019-09-20 02:42 ./usr/lib/R/library/tcltk/libs/tcltk.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/
-rw-r--r-- root/root       402 2019-09-20 02:42 ./usr/lib/R/library/tools/DESCRIPTION
-rw-r--r-- root/root      3785 2019-09-20 02:42 ./usr/lib/R/library/tools/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/
-rw-r--r-- root/root      3262 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/features.rds
-rw-r--r-- root/root      3287 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/hsearch.rds
-rw-r--r-- root/root      1786 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/links.rds
-rw-r--r-- root/root      1824 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/nsInfo.rds
-rw-r--r-- root/root       633 2019-09-20 02:42 ./usr/lib/R/library/tools/Meta/package.rds
-rw-r--r-- root/root      7602 2019-09-20 02:42 ./usr/lib/R/library/tools/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/R/
-rw-r--r-- root/root      8318 2019-09-20 02:42 ./usr/lib/R/library/tools/R/sysdata.rdb
-rw-r--r-- root/root       214 2019-09-20 02:42 ./usr/lib/R/library/tools/R/sysdata.rdx
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/tools/R/tools
-rw-r--r-- root/root   1873371 2019-09-20 02:42 ./usr/lib/R/library/tools/R/tools.rdb
-rw-r--r-- root/root     10952 2019-09-20 02:42 ./usr/lib/R/library/tools/R/tools.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/help/
-rw-r--r-- root/root      3788 2019-09-20 02:42 ./usr/lib/R/library/tools/help/AnIndex
-rw-r--r-- root/root      1552 2019-09-20 02:42 ./usr/lib/R/library/tools/help/aliases.rds
-rw-r--r-- root/root       818 2019-09-20 02:42 ./usr/lib/R/library/tools/help/paths.rds
-rw-r--r-- root/root    242680 2019-09-20 02:42 ./usr/lib/R/library/tools/help/tools.rdb
-rw-r--r-- root/root      1671 2019-09-20 02:42 ./usr/lib/R/library/tools/help/tools.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/html/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/tools/libs/
-rw-r--r-- root/root     79752 2019-09-20 02:42 ./usr/lib/R/library/tools/libs/tools.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/
-rw-r--r-- root/root       238 2019-09-20 02:42 ./usr/lib/R/library/translations/DESCRIPTION
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/da/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/
-rw-r--r-- root/root     53685 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3227 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     10085 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root      1247 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root      1247 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root      1335 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      2626 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2113 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root      4480 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1279 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2168 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      5905 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root      4964 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root     48915 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20034 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9186 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root       583 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       843 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4281 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1484 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       552 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/splines.mo
-rw-r--r-- root/root      6180 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1272 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root       969 2019-09-20 02:42 ./usr/lib/R/library/translations/da/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/de/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/
-rw-r--r-- root/root     53834 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3573 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13424 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15442 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     17066 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     68155 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3811 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2612 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     86428 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1294 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2238 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     44798 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     40881 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    163281 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20402 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     16772 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12038 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2751 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5251 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2083 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       560 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18919 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1310 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3614 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5352 2019-09-20 02:42 ./usr/lib/R/library/translations/de/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en/LC_MESSAGES/
-rw-r--r-- root/root       831 2019-09-20 02:42 ./usr/lib/R/library/translations/en/LC_MESSAGES/R.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/
-rw-r--r-- root/root     53797 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3475 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     12779 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     14883 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     16431 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     65181 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3611 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2491 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     83649 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1207 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2149 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     42929 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     39471 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    155793 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R.mo
-rw-r--r-- root/root     15711 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     11573 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2563 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4943 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1959 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       509 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18097 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1217 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3427 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5127 2019-09-20 02:42 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en_GB/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/
-rw-r--r-- root/root       396 2019-09-20 02:42 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root       956 2019-09-20 02:42 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R.mo
-rw-r--r-- root/root      1166 2019-09-20 02:42 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/grDevices.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/es/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/es/LC_MESSAGES/
-rw-r--r-- root/root    115265 2019-09-20 02:42 ./usr/lib/R/library/translations/es/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20799 2019-09-20 02:42 ./usr/lib/R/library/translations/es/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9207 2019-09-20 02:42 ./usr/lib/R/library/translations/es/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/LC_MESSAGES/
-rw-r--r-- root/root       553 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      1656 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root      2208 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R.mo
-rw-r--r-- root/root     26917 2019-09-20 02:42 ./usr/lib/R/library/translations/fa/LC_MESSAGES/RGui.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/
-rw-r--r-- root/root     56369 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3787 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13692 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15574 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     17309 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     70340 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3951 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2693 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     87517 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1395 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2390 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     43361 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     40140 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    164302 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R.mo
-rw-r--r-- root/root     21274 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     17092 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12487 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2844 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5603 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2208 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       582 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18825 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1407 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3818 2019-09-20 02:42 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/it/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/
-rw-r--r-- root/root     19901 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      5783 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root      8966 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     53920 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1269 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root       916 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      5128 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     85043 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/R.mo
-rw-r--r-- root/root     18580 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      4616 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root      8747 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       566 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/grid.mo
-rw-r--r-- root/root     11776 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/stats.mo
-rw-r--r-- root/root       661 2019-09-20 02:42 ./usr/lib/R/library/translations/it/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/
-rw-r--r-- root/root     64468 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      4364 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     15549 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     17888 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     19961 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     77674 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3174 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     99101 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1492 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2733 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     52810 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     47232 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    190790 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R.mo
-rw-r--r-- root/root     23920 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     19889 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     13936 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      3230 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      6020 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/methods.mo
-rw-r--r-- root/root       527 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     21515 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1435 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      4153 2019-09-20 02:42 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/
-rw-r--r-- root/root     43665 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      2408 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13770 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     16151 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     16837 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     58582 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      4261 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      3039 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     81831 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1407 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2530 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     41387 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     42915 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    160357 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R.mo
-rw-r--r-- root/root     23304 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     18059 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12714 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      3055 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5773 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2363 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       561 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     19503 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1489 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3722 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5663 2019-09-20 02:42 ./usr/lib/R/library/translations/ko/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/LC_MESSAGES/
-rw-r--r-- root/root     39889 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root    125529 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20215 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9530 2019-09-20 02:42 ./usr/lib/R/library/translations/nn/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/
-rw-r--r-- root/root     60387 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      4009 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     14367 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     16206 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     18066 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     68446 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      4251 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2789 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     92991 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1517 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2476 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     48061 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     43535 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    168695 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20979 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     17327 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12703 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2975 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5275 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2301 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       721 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     19747 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1480 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3886 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5708 2019-09-20 02:42 ./usr/lib/R/library/translations/pl/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/
-rw-r--r-- root/root     32403 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3553 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root      9668 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     12405 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root      5041 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root      5106 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      2244 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     49188 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1354 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2325 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      2111 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root      1218 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    131859 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20729 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      2529 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     10057 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       957 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4679 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/methods.mo
-rw-r--r-- root/root       634 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     16935 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1370 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root       814 2019-09-20 02:42 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/
-rw-r--r-- root/root     54805 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      4936 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13627 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15532 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     16692 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     65961 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3908 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2662 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     86604 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1449 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2334 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     44414 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     40653 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    209653 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20225 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     16327 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     15753 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2788 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5072 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2134 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       605 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18617 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1376 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3675 2019-09-20 02:42 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/
-rw-r--r-- root/root       790 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root     34017 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1275 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root       522 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root       941 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    124265 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20684 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9716 2019-09-20 02:42 ./usr/lib/R/library/translations/tr/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/
-rw-r--r-- root/root     47656 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3209 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     11427 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     13590 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     14655 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     58897 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3325 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2390 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     74985 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1204 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2112 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     30817 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     34114 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    139868 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R.mo
-rw-r--r-- root/root     17418 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     14498 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     10701 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2362 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4726 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1909 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       501 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     16194 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1220 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3227 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_TW/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/
-rw-r--r-- root/root    125530 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R.mo
-rw-r--r-- root/root     17721 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9112 2019-09-20 02:42 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/
-rw-r--r-- root/root       358 2019-09-20 02:42 ./usr/lib/R/library/utils/DESCRIPTION
-rw-r--r-- root/root      9149 2019-09-20 02:42 ./usr/lib/R/library/utils/INDEX
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/
-rw-r--r-- root/root      6938 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/features.rds
-rw-r--r-- root/root      6966 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/hsearch.rds
-rw-r--r-- root/root      3635 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/links.rds
-rw-r--r-- root/root      2301 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/nsInfo.rds
-rw-r--r-- root/root       602 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/package.rds
-rw-r--r-- root/root       227 2019-09-20 02:42 ./usr/lib/R/library/utils/Meta/vignette.rds
-rw-r--r-- root/root      7043 2019-09-20 02:42 ./usr/lib/R/library/utils/NAMESPACE
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/R/
-rw-r--r-- root/root     14349 2019-09-20 02:42 ./usr/lib/R/library/utils/R/sysdata.rdb
-rw-r--r-- root/root       195 2019-09-20 02:42 ./usr/lib/R/library/utils/R/sysdata.rdx
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/lib/R/library/utils/R/utils
-rw-r--r-- root/root    925003 2019-09-20 02:42 ./usr/lib/R/library/utils/R/utils.rdb
-rw-r--r-- root/root      7027 2019-09-20 02:42 ./usr/lib/R/library/utils/R/utils.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/Sweave/
-rw-r--r-- root/root      1305 2019-09-20 02:42 ./usr/lib/R/library/utils/Sweave/Sweave-test-1.Rnw
-rw-r--r-- root/root       725 2019-09-20 02:42 ./usr/lib/R/library/utils/Sweave/example-1.Rnw
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/doc/
-rw-r--r-- root/root      1212 2019-09-20 02:42 ./usr/lib/R/library/utils/doc/Sweave.R
-rw-r--r-- root/root     32774 2019-09-20 02:42 ./usr/lib/R/library/utils/doc/Sweave.Rnw
-rw-r--r-- root/root    322408 2019-09-20 02:42 ./usr/lib/R/library/utils/doc/Sweave.pdf
-rw-r--r-- root/root      1311 2019-09-20 02:42 ./usr/lib/R/library/utils/doc/index.html
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/help/
-rw-r--r-- root/root      8215 2019-09-20 02:42 ./usr/lib/R/library/utils/help/AnIndex
-rw-r--r-- root/root      3092 2019-09-20 02:42 ./usr/lib/R/library/utils/help/aliases.rds
-rw-r--r-- root/root      1460 2019-09-20 02:42 ./usr/lib/R/library/utils/help/paths.rds
-rw-r--r-- root/root    753053 2019-09-20 02:42 ./usr/lib/R/library/utils/help/utils.rdb
-rw-r--r-- root/root      3537 2019-09-20 02:42 ./usr/lib/R/library/utils/help/utils.rdx
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/html/
-rw-r--r-- root/root     13586 2019-09-20 02:42 ./usr/lib/R/library/utils/iconvlist
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/libs/
-rw-r--r-- root/root     42800 2019-09-20 02:42 ./usr/lib/R/library/utils/libs/utils.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/library/utils/misc/
-rw-r--r-- root/root        38 2019-09-20 02:42 ./usr/lib/R/library/utils/misc/exDIF.csv
-rw-r--r-- root/root       242 2019-09-20 02:42 ./usr/lib/R/library/utils/misc/exDIF.dif
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/modules/
-rw-r--r-- root/root    119292 2019-09-20 02:42 ./usr/lib/R/modules/R_X11.so
-rw-r--r-- root/root     47164 2019-09-20 02:42 ./usr/lib/R/modules/R_de.so
-rw-r--r-- root/root     75720 2019-09-20 02:42 ./usr/lib/R/modules/internet.so
-rw-r--r-- root/root     46680 2019-09-20 02:42 ./usr/lib/R/modules/lapack.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/R/site-library/
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/libR.so -> R/lib/libR.so
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       249 2019-09-20 02:42 ./usr/lib/pkgconfig/libR.pc
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/doc/
-rw-r--r-- root/root       979 2019-09-20 02:42 ./usr/share/R/doc/AUTHORS
-rw-r--r-- root/root      3283 2019-09-20 02:42 ./usr/share/R/doc/BioC_mirrors.csv
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2
-rw-r--r-- root/root     23202 2019-09-20 02:42 ./usr/share/R/doc/COPYRIGHTS
-rw-r--r-- root/root     25774 2019-09-20 02:42 ./usr/share/R/doc/CRAN_mirrors.csv
-rw-r--r-- root/root    120169 2019-09-20 02:42 ./usr/share/R/doc/FAQ
-rw-r--r-- root/root      2530 2019-09-20 02:42 ./usr/share/R/doc/KEYWORDS
-rw-r--r-- root/root      3047 2019-09-20 02:42 ./usr/share/R/doc/KEYWORDS.db
-rw-r--r-- root/root    313861 2019-09-20 02:42 ./usr/share/R/doc/NEWS
-rw-r--r-- root/root     93568 2019-09-20 02:42 ./usr/share/R/doc/NEWS.0
-rw-r--r-- root/root    294277 2019-09-20 02:42 ./usr/share/R/doc/NEWS.1
-rw-r--r-- root/root    641822 2019-09-20 02:42 ./usr/share/R/doc/NEWS.2
-rw-r--r-- root/root    597473 2019-09-20 02:42 ./usr/share/R/doc/NEWS.pdf
-rw-r--r-- root/root    517089 2019-09-20 02:42 ./usr/share/R/doc/NEWS.rds
-rw-r--r-- root/root      1253 2019-09-20 02:42 ./usr/share/R/doc/RESOURCES
-rw-r--r-- root/root      3532 2019-09-20 02:42 ./usr/share/R/doc/THANKS
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/doc/html/
-rw-r--r-- root/root    356339 2019-09-20 02:42 ./usr/share/R/doc/html/NEWS.2.html
-rw-r--r-- root/root    448084 2019-09-20 02:42 ./usr/share/R/doc/html/NEWS.html
-rw-r--r-- root/root      1335 2019-09-20 02:42 ./usr/share/R/doc/html/R.css
-rw-r--r-- root/root      6755 2019-09-20 02:42 ./usr/share/R/doc/html/Rlogo.pdf
-rw-r--r-- root/root      2693 2019-09-20 02:42 ./usr/share/R/doc/html/Rlogo.svg
-rw-r--r-- root/root       610 2019-09-20 02:42 ./usr/share/R/doc/html/Search.html
-rw-r--r-- root/root      7799 2019-09-20 02:42 ./usr/share/R/doc/html/SearchOn.html
-rw-r--r-- root/root      1972 2019-09-20 02:42 ./usr/share/R/doc/html/about.html
-rw-r--r-- root/root      5430 2019-09-20 02:42 ./usr/share/R/doc/html/favicon.ico
-rw-r--r-- root/root      2152 2019-09-20 02:42 ./usr/share/R/doc/html/index.html
-rw-r--r-- root/root      1013 2019-09-20 02:42 ./usr/share/R/doc/html/left.jpg
-rw-r--r-- root/root     15985 2019-09-20 02:42 ./usr/share/R/doc/html/logo.jpg
-rw-r--r-- root/root       425 2019-09-20 02:42 ./usr/share/R/doc/html/packages-head-utf8.html
-rw-r--r-- root/root      2946 2019-09-20 02:42 ./usr/share/R/doc/html/packages.html
-rw-r--r-- root/root      5111 2019-09-20 02:42 ./usr/share/R/doc/html/resources.html
-rw-r--r-- root/root      1022 2019-09-20 02:42 ./usr/share/R/doc/html/right.jpg
-rw-r--r-- root/root      1021 2019-09-20 02:42 ./usr/share/R/doc/html/up.jpg
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/doc/manual/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/doc/manual/images/
-rw-r--r-- root/root      7185 2019-09-20 02:42 ./usr/share/R/doc/manual/images/QQ.png
-rw-r--r-- root/root      5570 2019-09-20 02:42 ./usr/share/R/doc/manual/images/ecdf.png
-rw-r--r-- root/root      3884 2019-09-20 02:42 ./usr/share/R/doc/manual/images/fig11.png
-rw-r--r-- root/root      3853 2019-09-20 02:42 ./usr/share/R/doc/manual/images/fig12.png
-rw-r--r-- root/root      9376 2019-09-20 02:42 ./usr/share/R/doc/manual/images/hist.png
-rw-r--r-- root/root      2728 2019-09-20 02:42 ./usr/share/R/doc/manual/images/ice.png
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/include/
-rw-r--r-- root/root      3413 2019-09-20 02:42 ./usr/share/R/include/R.h
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/include/R_ext/
-rw-r--r-- root/root      6084 2019-09-20 02:42 ./usr/share/R/include/R_ext/Altrep.h
-rw-r--r-- root/root      5858 2019-09-20 02:42 ./usr/share/R/include/R_ext/Applic.h
-rw-r--r-- root/root      2938 2019-09-20 02:42 ./usr/share/R/include/R_ext/Arith.h
-rw-r--r-- root/root     17656 2019-09-20 02:42 ./usr/share/R/include/R_ext/BLAS.h
-rw-r--r-- root/root      1307 2019-09-20 02:42 ./usr/share/R/include/R_ext/Boolean.h
-rw-r--r-- root/root      4208 2019-09-20 02:42 ./usr/share/R/include/R_ext/Callbacks.h
-rw-r--r-- root/root      1262 2019-09-20 02:42 ./usr/share/R/include/R_ext/Complex.h
-rw-r--r-- root/root      3408 2019-09-20 02:42 ./usr/share/R/include/R_ext/Connections.h
-rw-r--r-- root/root      1752 2019-09-20 02:42 ./usr/share/R/include/R_ext/Constants.h
-rw-r--r-- root/root      1591 2019-09-20 02:42 ./usr/share/R/include/R_ext/Error.h
-rw-r--r-- root/root      1082 2019-09-20 02:42 ./usr/share/R/include/R_ext/GetX11Image.h
-rw-r--r-- root/root     30315 2019-09-20 02:42 ./usr/share/R/include/R_ext/GraphicsDevice.h
-rw-r--r-- root/root     19329 2019-09-20 02:42 ./usr/share/R/include/R_ext/GraphicsEngine.h
-rw-r--r-- root/root      6795 2019-09-20 02:42 ./usr/share/R/include/R_ext/Itermacros.h
-rw-r--r-- root/root    124109 2019-09-20 02:42 ./usr/share/R/include/R_ext/Lapack.h
-rw-r--r-- root/root      4603 2019-09-20 02:42 ./usr/share/R/include/R_ext/Linpack.h
-rw-r--r-- root/root      1577 2019-09-20 02:42 ./usr/share/R/include/R_ext/MathThreads.h
-rw-r--r-- root/root      1822 2019-09-20 02:42 ./usr/share/R/include/R_ext/Memory.h
-rw-r--r-- root/root      1281 2019-09-20 02:42 ./usr/share/R/include/R_ext/Parse.h
-rw-r--r-- root/root      1706 2019-09-20 02:42 ./usr/share/R/include/R_ext/Print.h
-rw-r--r-- root/root      2820 2019-09-20 02:42 ./usr/share/R/include/R_ext/PrtUtil.h
-rw-r--r-- root/root     10981 2019-09-20 02:42 ./usr/share/R/include/R_ext/QuartzDevice.h
-rw-r--r-- root/root      2508 2019-09-20 02:42 ./usr/share/R/include/R_ext/R-ftp-http.h
-rw-r--r-- root/root      3553 2019-09-20 02:42 ./usr/share/R/include/R_ext/RS.h
-rw-r--r-- root/root      2956 2019-09-20 02:42 ./usr/share/R/include/R_ext/RStartup.h
-rw-r--r-- root/root      2010 2019-09-20 02:42 ./usr/share/R/include/R_ext/Rallocators.h
-rw-r--r-- root/root      2115 2019-09-20 02:42 ./usr/share/R/include/R_ext/Random.h
-rw-r--r-- root/root      3522 2019-09-20 02:42 ./usr/share/R/include/R_ext/Rdynload.h
-rw-r--r-- root/root      1548 2019-09-20 02:42 ./usr/share/R/include/R_ext/Riconv.h
-rw-r--r-- root/root      4103 2019-09-20 02:42 ./usr/share/R/include/R_ext/Utils.h
-rw-r--r-- root/root      1470 2019-09-20 02:42 ./usr/share/R/include/R_ext/Visibility.h
-rw-r--r-- root/root      3353 2019-09-20 02:42 ./usr/share/R/include/R_ext/eventloop.h
-rw-r--r-- root/root      1769 2019-09-20 02:42 ./usr/share/R/include/R_ext/libextern.h
-rw-r--r-- root/root      2819 2019-09-20 02:42 ./usr/share/R/include/R_ext/stats_package.h
-rw-r--r-- root/root      3108 2019-09-20 02:42 ./usr/share/R/include/R_ext/stats_stubs.h
-rw-r--r-- root/root       669 2019-09-20 02:42 ./usr/share/R/include/Rconfig.h
-rw-r--r-- root/root      6758 2019-09-20 02:42 ./usr/share/R/include/Rdefines.h
-rw-r--r-- root/root      2075 2019-09-20 02:42 ./usr/share/R/include/Rembedded.h
-rw-r--r-- root/root      5456 2019-09-20 02:42 ./usr/share/R/include/Rinterface.h
-rw-r--r-- root/root     57273 2019-09-20 02:42 ./usr/share/R/include/Rinternals.h
-rw-r--r-- root/root     17446 2019-09-20 02:42 ./usr/share/R/include/Rmath.h
-rw-r--r-- root/root       505 2019-09-20 02:42 ./usr/share/R/include/Rversion.h
-rw-r--r-- root/root      2593 2019-09-20 02:42 ./usr/share/R/include/S.h
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/R/
-rw-r--r-- root/root      3033 2019-09-20 02:42 ./usr/share/R/share/R/REMOVE.R
-rw-r--r-- root/root       283 2019-09-20 02:42 ./usr/share/R/share/R/examples-footer.R
-rw-r--r-- root/root      3915 2019-09-20 02:42 ./usr/share/R/share/R/examples-header.R
-rw-r--r-- root/root      1056 2019-09-20 02:42 ./usr/share/R/share/R/nspackloader.R
-rw-r--r-- root/root       131 2019-09-20 02:42 ./usr/share/R/share/R/tests-startup.R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/Rd/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/Rd/macros/
-rw-r--r-- root/root      2364 2019-09-20 02:42 ./usr/share/R/share/Rd/macros/system.Rd
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/dictionaries/
-rw-r--r-- root/root      2614 2019-09-20 02:42 ./usr/share/R/share/dictionaries/en_stats.rds
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/encodings/
-rw-r--r-- root/root     74056 2019-09-20 02:42 ./usr/share/R/share/encodings/Adobe-glyphlist
-rw-r--r-- root/root     53369 2019-09-20 02:42 ./usr/share/R/share/encodings/character-sets
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/java/
-rw-r--r-- root/root        87 2019-09-20 02:42 ./usr/share/R/share/java/README
-rw-r--r-- root/root      1356 2019-09-20 02:42 ./usr/share/R/share/java/getsp.class
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/licenses/
-rw-r--r-- root/root     34523 2019-09-20 02:42 ./usr/share/R/share/licenses/AGPL-3
-rw-r--r-- root/root      9073 2019-09-20 02:42 ./usr/share/R/share/licenses/Artistic-2.0
-rw-r--r-- root/root      1630 2019-09-20 02:42 ./usr/share/R/share/licenses/BSD_2_clause
-rw-r--r-- root/root      1844 2019-09-20 02:42 ./usr/share/R/share/licenses/BSD_3_clause
-rw-r--r-- root/root     18092 2019-09-20 02:42 ./usr/share/R/share/licenses/GPL-2
-rw-r--r-- root/root     35149 2019-09-20 02:42 ./usr/share/R/share/licenses/GPL-3
-rw-r--r-- root/root     25292 2019-09-20 02:42 ./usr/share/R/share/licenses/LGPL-2
-rw-r--r-- root/root     26530 2019-09-20 02:42 ./usr/share/R/share/licenses/LGPL-2.1
-rw-r--r-- root/root      7652 2019-09-20 02:42 ./usr/share/R/share/licenses/LGPL-3
-rw-r--r-- root/root      1380 2019-09-20 02:42 ./usr/share/R/share/licenses/MIT
-rw-r--r-- root/root      9962 2019-09-20 02:42 ./usr/share/R/share/licenses/license.db
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/make/
-rw-r--r-- root/root      6647 2019-09-20 02:42 ./usr/share/R/share/make/basepkg.mk
-rw-r--r-- root/root       482 2019-09-20 02:42 ./usr/share/R/share/make/check_vars_ini.mk
-rw-r--r-- root/root       812 2019-09-20 02:42 ./usr/share/R/share/make/check_vars_out.mk
-rw-r--r-- root/root        86 2019-09-20 02:42 ./usr/share/R/share/make/clean.mk
-rw-r--r-- root/root        92 2019-09-20 02:42 ./usr/share/R/share/make/config.mk
-rw-r--r-- root/root       785 2019-09-20 02:42 ./usr/share/R/share/make/lazycomp.mk
-rw-r--r-- root/root       471 2019-09-20 02:42 ./usr/share/R/share/make/shlib.mk
-rw-r--r-- root/root       918 2019-09-20 02:42 ./usr/share/R/share/make/vars.mk
-rw-r--r-- root/root      1142 2019-09-20 02:42 ./usr/share/R/share/make/winshlib.mk
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/sh/
-rwxr-xr-x root/root        27 2019-09-20 02:42 ./usr/share/R/share/sh/echo.sh
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/bib/
-rw-r--r-- root/root    171965 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/bib/RJournal.bib
-rw-r--r-- root/root     72374 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/bib/Rnews.bib
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/bst/
-rw-r--r-- root/root     32989 2019-09-20 02:42 ./usr/share/R/share/texmf/bibtex/bst/jss.bst
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/
-rw-r--r-- root/root     15153 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/Rd.sty
-rw-r--r-- root/root      1635 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/Sweave.sty
-rw-r--r-- root/root     14804 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/jss.cls
-rw-r--r-- root/root       644 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/omsaer.fd
-rw-r--r-- root/root       607 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/omsaett.fd
-rw-r--r-- root/root       607 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/omscmtt.fd
-rw-r--r-- root/root       534 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/ts1aer.fd
-rw-r--r-- root/root       299 2019-09-20 02:42 ./usr/share/R/share/texmf/tex/latex/ts1aett.fd
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/applications/
-rw-r--r-- root/root       213 2019-09-20 02:42 ./usr/share/applications/R.desktop
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/bash-completion/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/bash-completion/completions/
-rw-r--r-- root/root     13596 2019-03-05 11:56 ./usr/share/bash-completion/completions/R
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core/
-rw-r--r-- root/root     35933 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.0.gz
-rw-r--r-- root/root    108753 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.1.gz
-rw-r--r-- root/root     96630 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.2.Rd.gz
-rw-r--r-- root/root    229657 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.2.gz
-rw-r--r-- root/root    119522 2019-07-03 22:15 ./usr/share/doc/r-base-core/NEWS.Rd.gz
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    588638 2019-09-20 02:42 ./usr/share/doc/r-base-core/NEWS.pdf.gz
-rw-r--r-- root/root    503742 2019-09-20 02:42 ./usr/share/doc/r-base-core/NEWS.rds.gz
-rw-r--r-- root/root      2739 2019-03-05 11:56 ./usr/share/doc/r-base-core/README.Atlas.gz
-rw-r--r-- root/root      2107 2018-09-25 08:47 ./usr/share/doc/r-base-core/README.gz
-rw-r--r-- root/root      3026 2019-03-05 11:56 ./usr/share/doc/r-base-core/README.mathlib
-rw-r--r-- root/root     32828 2019-09-20 02:42 ./usr/share/doc/r-base-core/changelog.Debian.gz
-rw-r--r-- root/root    109826 2019-09-20 02:42 ./usr/share/doc/r-base-core/changelog.gz
-rw-r--r-- root/root     20761 2019-03-05 11:56 ./usr/share/doc/r-base-core/copyright
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core/doc -> ../../R/doc
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/icons/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/icons/hicolor/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/icons/hicolor/48x48/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/icons/hicolor/48x48/apps/
-rw-r--r-- root/root      4440 2019-09-20 02:42 ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/info/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/overrides/
-rw-r--r-- root/root      7851 2019-03-05 11:56 ./usr/share/lintian/overrides/r-base-core
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/man/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/man/man1/
-rw-r--r-- root/root      2586 2019-09-20 02:42 ./usr/share/man/man1/R.1.gz
-rw-r--r-- root/root       659 2019-09-20 02:42 ./usr/share/man/man1/Rscript.1.gz
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/texmf/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/texmf/tex/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/texmf/tex/latex/
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf


r-mathlib_3.6.1-5_armhf.deb
---------------------------

 new Debian package, version 2.0.
 size 1943924 bytes: control archive=2052 bytes.
    1760 bytes,    39 lines      control              
    1219 bytes,    18 lines      md5sums              
     369 bytes,    27 lines   *  postinst             #!/bin/sh
      21 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: r-mathlib
 Source: r-base
 Version: 3.6.1-5
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 2269
 Depends: libc6 (>= 2.29)
 Recommends: r-base-core (= 3.6.1-5), r-base-dev (= 3.6.1-5)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

drwxr-xr-x root/root         0 2019-09-20 02:42 ./
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/include/
-rw-r--r-- root/root     17446 2019-09-20 02:42 ./usr/include/Rmath.h
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/
-rw-r--r-- root/root    273538 2019-09-20 02:42 ./usr/lib/libRmath.a
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/libRmath.so -> libRmath.so.1
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0
-rw-r--r-- root/root    149280 2019-09-20 02:42 ./usr/lib/libRmath.so.1.0.0
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       173 2019-09-20 02:42 ./usr/lib/pkgconfig/libRmath.pc
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root     35933 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.0.gz
-rw-r--r-- root/root    108753 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.1.gz
-rw-r--r-- root/root     96630 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz
-rw-r--r-- root/root    229657 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.2.gz
-rw-r--r-- root/root    119522 2019-07-03 22:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz
lrwxrwxrwx root/root         0 2019-09-20 02:42 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    588638 2019-09-20 02:42 ./usr/share/doc/r-mathlib/NEWS.pdf.gz
-rw-r--r-- root/root    503742 2019-09-20 02:42 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2018-09-25 08:47 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root      3026 2019-03-05 11:56 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root     32828 2019-09-20 02:42 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root    109826 2019-09-20 02:42 ./usr/share/doc/r-mathlib/changelog.gz
-rw-r--r-- root/root     20761 2019-03-05 11:56 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1371 2018-09-25 08:46 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-09-20 02:42 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       364 2019-03-05 11:56 ./usr/share/lintian/overrides/r-mathlib


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 333360
Build-Time: 3766
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 2457
Job: r-base_3.6.1-5
Machine Architecture: armhf
Package: r-base
Package-Time: 6315
Source-Version: 3.6.1-5
Space: 333360
Status: successful
Version: 3.6.1-5
--------------------------------------------------------------------------------
Finished at 2019-09-25T07:57:55Z
Build needed 01:45:15, 333360k disk space

Page generated on 2024-05-16 04:51:21 UTC
Pages written by Mehdi Dogguy
Architecture specific issues should be sent to <$arch@buildd.debian.org>
Service maintained by the wanna-build team <debian-wb-team@lists.debian.org>
Download code with git: git clone https://buildd.debian.org/git/pgstatus.git
Valid XHTML  Valid CSS