Raspbian Package Auto-Building

r-base → 3.2.0-2 → armhf → 2015-05-02 12:51:08

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ r-base 3.2.0-2 (armhf)                                     02 May 2015 11:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: r-base
Version: 3.2.0-2
Source Version: 3.2.0-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/r-base-KUtNJk/r-base-3.2.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-base-KUtNJk' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-fc4d4d4a-c4e0-4130-bd38-1917dd7c18ed' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [7859 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9632 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 17.5 MB in 33s (527 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
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Checking available source versions...

Download source files with APT
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Reading package lists...
Building dependency tree...
Need to get 29.2 MB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-base 3.2.0-2 (dsc) [2822 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-base 3.2.0-2 (tar) [29.1 MB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-base 3.2.0-2 (diff) [86.0 kB]
Fetched 29.2 MB in 6s (4222 kB/s)
Download complete and in download only mode

Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-vwKPhP/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded.
Need to get 0 B/816 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package `sbuild-build-depends-r-base-dummy' in `/«BUILDDIR»/resolver-mpDA_A/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-base build dependencies (apt-based resolver)                       │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libelfg0 libexpat1 libexpat1-dev libffi6
  libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6
  libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
  libgfortran-4.9-dev libgfortran3 libgif4 libgirepository-1.0-1
  libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common
  libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev
  libice6 libicu52 libidn11 libijs-0.35 libintl-perl libjasper1 libjbig-dev
  libjbig0 libjbig2dec0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjson-c2 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0
  liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 liblzma-dev liblzo2-2
  libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3 libogg0 libopenjpeg5
  libp11-kit0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre3-dev
  libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng12-dev libpoppler46 libpotrace0 libptexenc1 libpthread-stubs0-dev
  libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  libreadline-dev libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db
  libsigsegv2 libsm-dev libsm6 libsndfile1 libsqlite3-0 libssh2-1 libssl1.0.0
  libsynctex1 libtasn1-6 libtcl8.6 libtext-unidecode-perl libthai-data
  libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libtk8.6
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1
  libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev
  libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6
  libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk
  openjdk-7-jre openjdk-7-jre-headless openssl pkg-config po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal shared-mime-info tcl8.6 tcl8.6-dev tex-common texinfo
  texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6
  tk8.6-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata
  tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev
  x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc
  gfortran-doc gfortran-4.9-doc libgfortran3-dbg groff equivs
  libasound2-plugins alsa-utils libcairo2-doc cups-common libcurl4-doc
  libcurl3-dbg libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
  libssl-dev libglib2.0-doc gnutls-bin krb5-doc krb5-user librsvg2-common gvfs
  libice-doc libintl-xs-perl libjasper-runtime liblcms2-utils liblzma-doc
  ncurses-doc imagemagick libpango1.0-doc pcscd pulseaudio readline-doc
  libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser
  mail-transport-agent inews openjdk-7-demo openjdk-7-source visualvm
  icedtea-7-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic
  fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei fonts-indic
  libmail-box-perl poppler-utils ghostscript fonts-arphic-ukai
  fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc
  binfmt-support tcl-tclreadline tcl8.6-doc texinfo-doc-nonfree perl-tk gv
  postscript-viewer xpdf-reader pdf-viewer latexdiff latexmk dvidvi fragmaster
  lacheck purifyeps xindy chktex dvipng cm-super python-pygments
  libfile-which-perl texlive-pstricks libtcltk-ruby dot2tex tk8.6-doc gvfs-bin
  xfs xserver
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev bzip2-doc
  libgl1-mesa-dri xdg-user-dirs hicolor-icon-theme libgtk2.0-bin krb5-locales
  libsasl2-modules tcpd libx11-doc libxml-sax-expat-perl xml-core libgnome2-0
  libgnomevfs2-0 libgconf2-4 icedtea-7-jre-jamvm libmail-sendmail-perl lmodern
  ruby wish libfile-homedir-perl libyaml-tiny-perl texlive-fonts-extra-doc
  tipa texlive-fonts-recommended-doc tex-gyre texlive-latex-base-doc
  texlive-latex-extra-doc prosper texlive-latex-recommended-doc
  texlive-pictures-doc prerex xterm x-terminal-emulator libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libelfg0 libexpat1 libexpat1-dev libffi6
  libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6
  libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
  libgfortran-4.9-dev libgfortran3 libgif4 libgirepository-1.0-1
  libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common
  libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev
  libice6 libicu52 libidn11 libijs-0.35 libintl-perl libjasper1 libjbig-dev
  libjbig0 libjbig2dec0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjson-c2 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0
  liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 liblzma-dev liblzo2-2
  libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3 libogg0 libopenjpeg5
  libp11-kit0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre3-dev
  libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng12-dev libpoppler46 libpotrace0 libptexenc1 libpthread-stubs0-dev
  libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  libreadline-dev libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db
  libsigsegv2 libsm-dev libsm6 libsndfile1 libsqlite3-0 libssh2-1 libssl1.0.0
  libsynctex1 libtasn1-6 libtcl8.6 libtext-unidecode-perl libthai-data
  libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libtk8.6
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1
  libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev
  libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6
  libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk
  openjdk-7-jre openjdk-7-jre-headless openssl pkg-config po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal sbuild-build-depends-r-base-dummy shared-mime-info tcl8.6
  tcl8.6-dev tex-common texinfo texlive-base texlive-binaries
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-generic-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures tk8.6 tk8.6-dev ttf-adf-accanthis
  ttf-adf-gillius ttf-adf-universalis tzdata-java ucf x11-common x11-xkb-utils
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
The following packages will be upgraded:
  tzdata
1 upgraded, 302 newly installed, 0 to remove and 9 not upgraded.
Need to get 434 MB/434 MB of archives.
After this operation, 1242 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.1k-3 [844 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main bash-completion all 1:2.1-4 [182 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libnettle4 armhf 2.7.1-5 [178 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libhogweed2 armhf 2.7.1-5 [117 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.20.7-1 [66.7 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.4-3 [43.8 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.8-7 [624 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.12.1+dfsg-19 [54.8 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.12.1+dfsg-19 [108 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.12.1+dfsg-19 [256 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-19 [128 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.30-1 [166 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-13 [65.5 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-13 [97.2 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.40+dfsg-1 [192 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.7.4-1 [377 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libwrap0 armhf 7.6.q-25 [55.5 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.9-2 [376 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.9-2 [1150 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.58 [36.0 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.9-2 [1812 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.9-2 [251 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.5.2-4 [412 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main fonts-droid all 1:4.4.4r2-6 [3729 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main fonts-lato all 2.0-1 [2684 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libasound2-data all 1.0.28-1 [64.8 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libasound2 armhf 1.0.28-1 [316 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libasyncns0 armhf 0.8-5 [11.4 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.42.1-1 [2250 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libatk1.0-data all 2.14.0-1 [181 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libatk1.0-0 armhf 2.14.0-1 [84.2 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.32.6-3 [422 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3 [38.1 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.2-3 [126 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.2-3 [656 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.0-2.1 [662 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.3.1-12 [97.0 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libjasper1 armhf 1.900.1-debian1-2.4 [109 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.3-12.3 [194 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libgdk-pixbuf2.0-common all 2.31.1-2 [293 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libgdk-pixbuf2.0-0 armhf 2.31.1-2+b1 [145 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libgtk2.0-common all 2.24.25-3 [3123 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libavahi-common-data armhf 0.6.31-5 [98.8 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libavahi-common3 armhf 0.6.31-5 [48.0 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libavahi-client3 armhf 0.6.31-5 [50.6 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libcups2 armhf 1.7.5-11 [252 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.21-1 [159 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.8-1 [29.1 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.21-1 [43.4 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 0.9.40-2 [481 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libxfixes3 armhf 1:5.0.1-2 [19.6 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main libxcursor1 armhf 1:1.1.14-1 [34.7 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main libxdamage1 armhf 1:1.1.4-2 [13.9 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main libxi6 armhf 2:1.7.4-1 [73.4 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main libxinerama1 armhf 2:1.1.3-1 [16.9 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main libxrandr2 armhf 2:1.4.2-1 [31.7 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main shared-mime-info armhf 1.3-1 [630 kB]
Get:88 http://172.17.0.1/private/ stretch-staging/main libgtk2.0-0 armhf 2.24.25-3 [2012 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main libatk-wrapper-java all 0.30.5-1 [30.3 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main libatk-wrapper-java-jni armhf 0.30.5-1 [20.6 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main libcairo-gobject2 armhf 1.14.0-2.1 [304 kB]
Get:92 http://172.17.0.1/private/ stretch-staging/main liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main libcairo-script-interpreter2 armhf 1.14.0-2.1 [331 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main libcupsimage2 armhf 1.7.5-11 [115 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main libcupsfilters1 armhf 1.0.61-5 [98.0 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1 [54.0 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.42.1-1 [238 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main libelfg0 armhf 0.8.13-5 [55.7 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main libogg0 armhf 1.3.2-1 [17.2 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main libflac8 armhf 1.3.1-2 [145 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main libfontenc1 armhf 1:1.1.2-1 [23.9 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 4.9.2-10 [154 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libgif4 armhf 4.1.6-11 [40.4 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main libglapi-mesa armhf 10.4.2-2 [66.6 kB]
Get:107 http://172.17.0.1/private/ stretch-staging/main libx11-xcb1 armhf 2:1.6.2-3 [163 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main libxcb-dri2-0 armhf 1.10-3 [12.1 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libxcb-dri3-0 armhf 1.10-3 [10.6 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main libxcb-glx0 armhf 1.10-3 [23.8 kB]
Get:111 http://172.17.0.1/private/ stretch-staging/main libxcb-present0 armhf 1.10-3 [10.8 kB]
Get:112 http://172.17.0.1/private/ stretch-staging/main libxcb-sync1 armhf 1.10-3 [13.2 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main libxshmfence1 armhf 1.1-4+rpi1 [6704 B]
Get:114 http://172.17.0.1/private/ stretch-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main libgl1-mesa-glx armhf 10.4.2-2 [170 kB]
Get:116 http://172.17.0.1/private/ stretch-staging/main libharfbuzz-gobject0 armhf 0.9.40-2 [380 kB]
Get:117 http://172.17.0.1/private/ stretch-staging/main libicu52 armhf 52.1-8 [6551 kB]
Get:118 http://172.17.0.1/private/ stretch-staging/main libharfbuzz-icu0 armhf 0.9.40-2 [375 kB]
Get:119 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+7 [287 kB]
Get:120 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:121 http://172.17.0.1/private/ stretch-staging/main libijs-0.35 armhf 0.35-10 [18.5 kB]
Get:122 http://172.17.0.1/private/ stretch-staging/main liblcms2-2 armhf 2.6-3 [113 kB]
Get:123 http://172.17.0.1/private/ stretch-staging/main libnspr4 armhf 2:4.10.8-1 [94.9 kB]
Get:124 http://172.17.0.1/private/ stretch-staging/main libnss3 armhf 2:3.17.2-1.1 [926 kB]
Get:125 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:126 http://172.17.0.1/private/ stretch-staging/main libpangoxft-1.0-0 armhf 1.36.8-3 [193 kB]
Get:127 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:128 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0 armhf 2:8.35-3.3 [139 kB]
Get:129 http://172.17.0.1/private/ stretch-staging/main libpcsclite1 armhf 1.8.13-1 [53.6 kB]
Get:130 http://172.17.0.1/private/ stretch-staging/main libopenjpeg5 armhf 1:1.5.2-3 [93.3 kB]
Get:131 http://172.17.0.1/private/ stretch-staging/main libpoppler46 armhf 0.26.5-2 [1092 kB]
Get:132 http://172.17.0.1/private/ stretch-staging/main libjson-c2 armhf 0.11-4 [22.7 kB]
Get:133 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1 [31.2 kB]
Get:134 http://172.17.0.1/private/ stretch-staging/main libvorbis0a armhf 1.3.4-2 [82.7 kB]
Get:135 http://172.17.0.1/private/ stretch-staging/main libvorbisenc2 armhf 1.3.4-2 [72.0 kB]
Get:136 http://172.17.0.1/private/ stretch-staging/main libsndfile1 armhf 1.0.25-9.1 [204 kB]
Get:137 http://172.17.0.1/private/ stretch-staging/main libxtst6 armhf 2:1.2.2-1 [26.8 kB]
Get:138 http://172.17.0.1/private/ stretch-staging/main libpulse0 armhf 5.0-13 [221 kB]
Get:139 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:140 http://172.17.0.1/private/ stretch-staging/main tzdata all 2015d-1 [194 kB]
Get:141 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.2+dfsg-2 [862 kB]
Get:142 http://172.17.0.1/private/ stretch-staging/main libtiffxx5 armhf 4.0.3-12.3 [74.4 kB]
Get:143 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:144 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.2-1 [660 kB]
Get:145 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:146 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:147 http://172.17.0.1/private/ stretch-staging/main libxmu6 armhf 2:1.1.2-1 [50.8 kB]
Get:148 http://172.17.0.1/private/ stretch-staging/main libxpm4 armhf 1:3.5.11-1 [41.7 kB]
Get:149 http://172.17.0.1/private/ stretch-staging/main libxaw7 armhf 2:1.0.12-2 [159 kB]
Get:150 http://172.17.0.1/private/ stretch-staging/main libxfont1 armhf 1:1.5.1-1 [118 kB]
Get:151 http://172.17.0.1/private/ stretch-staging/main libxkbfile1 armhf 1:1.0.8-1 [74.9 kB]
Get:152 http://172.17.0.1/private/ stretch-staging/main libxmuu1 armhf 2:1.1.2-1 [22.8 kB]
Get:153 http://172.17.0.1/private/ stretch-staging/main libzzip-0-13 armhf 0.13.62-3 [51.3 kB]
Get:154 http://172.17.0.1/private/ stretch-staging/main openssl armhf 1.0.1k-3 [664 kB]
Get:155 http://172.17.0.1/private/ stretch-staging/main ca-certificates all 20141019 [200 kB]
Get:156 http://172.17.0.1/private/ stretch-staging/main java-common all 0.52 [136 kB]
Get:157 http://172.17.0.1/private/ stretch-staging/main default-jre-headless armhf 2:1.7-52 [9114 B]
Get:158 http://172.17.0.1/private/ stretch-staging/main ca-certificates-java all 20140324 [13.7 kB]
Get:159 http://172.17.0.1/private/ stretch-staging/main tzdata-java all 2015d-1 [80.7 kB]
Get:160 http://172.17.0.1/private/ stretch-staging/main openjdk-7-jre-headless armhf 7u75-2.5.4-3+rpi1 [37.6 MB]
Get:161 http://172.17.0.1/private/ stretch-staging/main poppler-data all 0.4.7-1 [1491 kB]
Get:162 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:163 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:164 http://172.17.0.1/private/ stretch-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:165 http://172.17.0.1/private/ stretch-staging/main libbison-dev armhf 2:3.0.2.dfsg-2 [425 kB]
Get:166 http://172.17.0.1/private/ stretch-staging/main bison armhf 2:3.0.2.dfsg-2 [854 kB]
Get:167 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.3-2 [1167 kB]
Get:168 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:169 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.16+nmu3 [220 kB]
Get:170 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150101 [813 kB]
Get:171 http://172.17.0.1/private/ stretch-staging/main openjdk-7-jre armhf 7u75-2.5.4-3+rpi1 [153 kB]
Get:172 http://172.17.0.1/private/ stretch-staging/main default-jre armhf 2:1.7-52 [966 B]
Get:173 http://172.17.0.1/private/ stretch-staging/main openjdk-7-jdk armhf 7u75-2.5.4-3+rpi1 [13.7 MB]
Get:174 http://172.17.0.1/private/ stretch-staging/main default-jdk armhf 2:1.7-52 [966 B]
Get:175 http://172.17.0.1/private/ stretch-staging/main fonts-cabin all 1.5-2 [139 kB]
Get:176 http://172.17.0.1/private/ stretch-staging/main fonts-comfortaa all 2.003-1 [133 kB]
Get:177 http://172.17.0.1/private/ stretch-staging/main fonts-crosextra-caladea all 20130214-1 [82.1 kB]
Get:178 http://172.17.0.1/private/ stretch-staging/main fonts-crosextra-carlito all 20130920-1 [745 kB]
Get:179 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-extra all 2.34-1 [1771 kB]
Get:180 http://172.17.0.1/private/ stretch-staging/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB]
Get:181 http://172.17.0.1/private/ stretch-staging/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB]
Get:182 http://172.17.0.1/private/ stretch-staging/main fonts-font-awesome all 4.2.0~dfsg-1 [346 kB]
Get:183 http://172.17.0.1/private/ stretch-staging/main fonts-freefont-otf all 20120503-4 [3186 kB]
Get:184 http://172.17.0.1/private/ stretch-staging/main fonts-freefont-ttf all 20120503-4 [4262 kB]
Get:185 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-artemisia all 1.1-5 [259 kB]
Get:186 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-complutum all 1.1-6 [41.6 kB]
Get:187 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-didot all 1.1-6 [278 kB]
Get:188 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-neohellenic all 1.1-6 [215 kB]
Get:189 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-olga all 1.1-5 [33.2 kB]
Get:190 http://172.17.0.1/private/ stretch-staging/main fonts-gfs-solomos all 1.1-5 [40.6 kB]
Get:191 http://172.17.0.1/private/ stretch-staging/main fonts-inconsolata all 001.010-5 [61.6 kB]
Get:192 http://172.17.0.1/private/ stretch-staging/main fonts-junicode all 0.7.8-2 [643 kB]
Get:193 http://172.17.0.1/private/ stretch-staging/main fonts-linuxlibertine all 5.3.0-2 [1713 kB]
Get:194 http://172.17.0.1/private/ stretch-staging/main fonts-lobster all 2.0-2 [39.5 kB]
Get:195 http://172.17.0.1/private/ stretch-staging/main fonts-lobstertwo all 2.0-2 [94.0 kB]
Get:196 http://172.17.0.1/private/ stretch-staging/main fonts-oflb-asana-math all 000.907-6 [245 kB]
Get:197 http://172.17.0.1/private/ stretch-staging/main fonts-sil-gentium all 20081126:1.02-13 [241 kB]
Get:198 http://172.17.0.1/private/ stretch-staging/main fonts-sil-gentium-basic all 1.1-7 [382 kB]
Get:199 http://172.17.0.1/private/ stretch-staging/main libgfortran-4.9-dev armhf 4.9.2-10 [179 kB]
Get:200 http://172.17.0.1/private/ stretch-staging/main gfortran-4.9 armhf 4.9.2-10 [4525 kB]
Get:201 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:4.9.2-2 [1294 B]
Get:202 http://172.17.0.1/private/ stretch-staging/main libgirepository-1.0-1 armhf 1.42.0-2.2 [82.9 kB]
Get:203 http://172.17.0.1/private/ stretch-staging/main gir1.2-glib-2.0 armhf 1.42.0-2.2 [141 kB]
Get:204 http://172.17.0.1/private/ stretch-staging/main gir1.2-freedesktop armhf 1.42.0-2.2 [22.1 kB]
Get:205 http://172.17.0.1/private/ stretch-staging/main gir1.2-pango-1.0 armhf 1.36.8-3 [201 kB]
Get:206 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:207 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:208 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:209 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-7 [27.5 kB]
Get:210 http://172.17.0.1/private/ stretch-staging/main libexpat1-dev armhf 2.1.0-6 [117 kB]
Get:211 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:212 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2 [236 kB]
Get:213 http://172.17.0.1/private/ stretch-staging/main libfreetype6-dev armhf 2.5.2-4 [586 kB]
Get:214 http://172.17.0.1/private/ stretch-staging/main pkg-config armhf 0.28-1 [55.1 kB]
Get:215 http://172.17.0.1/private/ stretch-staging/main libfontconfig1-dev armhf 2.11.0-6.3 [875 kB]
Get:216 http://172.17.0.1/private/ stretch-staging/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:217 http://172.17.0.1/private/ stretch-staging/main x11proto-core-dev all 7.0.27-1 [729 kB]
Get:218 http://172.17.0.1/private/ stretch-staging/main libxau-dev armhf 1:1.0.8-1 [23.0 kB]
Get:219 http://172.17.0.1/private/ stretch-staging/main libxdmcp-dev armhf 1:1.1.2-1 [40.3 kB]
Get:220 http://172.17.0.1/private/ stretch-staging/main x11proto-input-dev all 2.3.1-1 [157 kB]
Get:221 http://172.17.0.1/private/ stretch-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:222 http://172.17.0.1/private/ stretch-staging/main xtrans-dev all 1.3.5-1 [100 kB]
Get:223 http://172.17.0.1/private/ stretch-staging/main libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:224 http://172.17.0.1/private/ stretch-staging/main libxcb1-dev armhf 1.10-3 [78.1 kB]
Get:225 http://172.17.0.1/private/ stretch-staging/main libx11-dev armhf 2:1.6.2-3 [726 kB]
Get:226 http://172.17.0.1/private/ stretch-staging/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB]
Get:227 http://172.17.0.1/private/ stretch-staging/main libxrender-dev armhf 1:0.9.8-1 [38.8 kB]
Get:228 http://172.17.0.1/private/ stretch-staging/main x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:229 http://172.17.0.1/private/ stretch-staging/main libxext-dev armhf 2:1.3.3-1 [102 kB]
Get:230 http://172.17.0.1/private/ stretch-staging/main libice-dev armhf 2:1.0.9-1 [58.1 kB]
Get:231 http://172.17.0.1/private/ stretch-staging/main libsm-dev armhf 2:1.2.2-1 [33.5 kB]
Get:232 http://172.17.0.1/private/ stretch-staging/main libpixman-1-dev armhf 0.32.6-3 [440 kB]
Get:233 http://172.17.0.1/private/ stretch-staging/main libxcb-render0-dev armhf 1.10-3 [21.7 kB]
Get:234 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0-dev armhf 1.10-3 [12.4 kB]
Get:235 http://172.17.0.1/private/ stretch-staging/main libglib2.0-data all 2.42.1-1 [2173 kB]
Get:236 http://172.17.0.1/private/ stretch-staging/main libglib2.0-bin armhf 2.42.1-1 [1334 kB]
Get:237 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-3.3 [411 kB]
Get:238 http://172.17.0.1/private/ stretch-staging/main libglib2.0-dev armhf 2.42.1-1 [2472 kB]
Get:239 http://172.17.0.1/private/ stretch-staging/main libcairo2-dev armhf 1.14.0-2.1 [784 kB]
Get:240 http://172.17.0.1/private/ stretch-staging/main libcurl4-openssl-dev armhf 7.42.1-1 [320 kB]
Get:241 http://172.17.0.1/private/ stretch-staging/main libjbig2dec0 armhf 0.11+20120125-1 [46.4 kB]
Get:242 http://172.17.0.1/private/ stretch-staging/main libgs9-common all 9.06~dfsg-2 [1979 kB]
Get:243 http://172.17.0.1/private/ stretch-staging/main libgs9 armhf 9.06~dfsg-2 [1600 kB]
Get:244 http://172.17.0.1/private/ stretch-staging/main libharfbuzz-dev armhf 0.9.40-2 [526 kB]
Get:245 http://172.17.0.1/private/ stretch-staging/main libintl-perl all 1.23-1 [1209 kB]
Get:246 http://172.17.0.1/private/ stretch-staging/main libjbig-dev armhf 2.1-3.1 [27.6 kB]
Get:247 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.3.1-12 [400 kB]
Get:248 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.3.1-12 [49.3 kB]
Get:249 http://172.17.0.1/private/ stretch-staging/main libkpathsea6 armhf 2014.20140926.35254-6 [145 kB]
Get:250 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:251 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:252 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:253 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 5.9+20140913-1 [65.4 kB]
Get:254 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 5.9+20140913-1 [154 kB]
Get:255 http://172.17.0.1/private/ stretch-staging/main libxft-dev armhf 2.3.2-1 [59.1 kB]
Get:256 http://172.17.0.1/private/ stretch-staging/main libpango1.0-dev armhf 1.36.8-3 [439 kB]
Get:257 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:258 http://172.17.0.1/private/ stretch-staging/main libpotrace0 armhf 1.12-1 [22.9 kB]
Get:259 http://172.17.0.1/private/ stretch-staging/main libptexenc1 armhf 2014.20140926.35254-6 [52.1 kB]
Get:260 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:261 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:262 http://172.17.0.1/private/ stretch-staging/main libsynctex1 armhf 2014.20140926.35254-6 [54.4 kB]
Get:263 http://172.17.0.1/private/ stretch-staging/main libtext-unidecode-perl all 1.22-1 [102 kB]
Get:264 http://172.17.0.1/private/ stretch-staging/main libtiff5-dev armhf 4.0.3-12.3 [317 kB]
Get:265 http://172.17.0.1/private/ stretch-staging/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB]
Get:266 http://172.17.0.1/private/ stretch-staging/main libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:267 http://172.17.0.1/private/ stretch-staging/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:268 http://172.17.0.1/private/ stretch-staging/main libxml-libxml-perl armhf 2.0116+dfsg-1+b2 [340 kB]
Get:269 http://172.17.0.1/private/ stretch-staging/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:270 http://172.17.0.1/private/ stretch-staging/main libxss-dev armhf 1:1.2.2-1 [22.7 kB]
Get:271 http://172.17.0.1/private/ stretch-staging/main libxt-dev armhf 1:1.1.4-1 [447 kB]
Get:272 http://172.17.0.1/private/ stretch-staging/main mpack armhf 1.6-8 [38.4 kB]
Get:273 http://172.17.0.1/private/ stretch-staging/main tex-common all 5.03 [625 kB]
Get:274 http://172.17.0.1/private/ stretch-staging/main preview-latex-style all 11.87-3+deb8u1 [318 kB]
Get:275 http://172.17.0.1/private/ stretch-staging/main tcl8.6 armhf 8.6.2+dfsg-2 [122 kB]
Get:276 http://172.17.0.1/private/ stretch-staging/main tcl8.6-dev armhf 8.6.2+dfsg-2 [887 kB]
Get:277 http://172.17.0.1/private/ stretch-staging/main texinfo armhf 5.2.0.dfsg.1-6 [955 kB]
Get:278 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:279 http://172.17.0.1/private/ stretch-staging/main texlive-binaries armhf 2014.20140926.35254-6 [5322 kB]
Get:280 http://172.17.0.1/private/ stretch-staging/main texlive-base all 2014.20141024-2 [17.7 MB]
Get:281 http://172.17.0.1/private/ stretch-staging/main texlive-latex-base all 2014.20141024-2 [858 kB]
Get:282 http://172.17.0.1/private/ stretch-staging/main texlive-extra-utils all 2014.20141024-1 [10.6 MB]
Get:283 http://172.17.0.1/private/ stretch-staging/main ttf-adf-universalis all 0.20090423-2 [221 kB]
Get:284 http://172.17.0.1/private/ stretch-staging/main ttf-adf-gillius all 0.20090423-2 [400 kB]
Get:285 http://172.17.0.1/private/ stretch-staging/main fonts-stix all 1.1.1-1 [588 kB]
Get:286 http://172.17.0.1/private/ stretch-staging/main ttf-adf-accanthis all 0.20090423-2 [401 kB]
Get:287 http://172.17.0.1/private/ stretch-staging/main texlive-fonts-extra all 2014.20141024-1 [204 MB]
Get:288 http://172.17.0.1/private/ stretch-staging/main texlive-fonts-recommended all 2014.20141024-2 [5653 kB]
Get:289 http://172.17.0.1/private/ stretch-staging/main texlive-generic-recommended all 2014.20141024-2 [2143 kB]
Get:290 http://172.17.0.1/private/ stretch-staging/main texlive-latex-recommended all 2014.20141024-2 [7630 kB]
Get:291 http://172.17.0.1/private/ stretch-staging/main texlive-pictures all 2014.20141024-2 [3039 kB]
Get:292 http://172.17.0.1/private/ stretch-staging/main texlive-latex-extra all 2014.20141024-1 [7604 kB]
Get:293 http://172.17.0.1/private/ stretch-staging/main tk8.6 armhf 8.6.2-1 [71.0 kB]
Get:294 http://172.17.0.1/private/ stretch-staging/main tk8.6-dev armhf 8.6.2-1 [652 kB]
Get:295 http://172.17.0.1/private/ stretch-staging/main x11-xkb-utils armhf 7.7+1 [138 kB]
Get:296 http://172.17.0.1/private/ stretch-staging/main xauth armhf 1:1.0.9-1 [35.6 kB]
Get:297 http://172.17.0.1/private/ stretch-staging/main xfonts-encodings all 1:1.0.4-2 [574 kB]
Get:298 http://172.17.0.1/private/ stretch-staging/main xfonts-utils armhf 1:7.7+2 [68.8 kB]
Get:299 http://172.17.0.1/private/ stretch-staging/main xfonts-base all 1:1.0.4 [5914 kB]
Get:300 http://172.17.0.1/private/ stretch-staging/main xkb-data all 2.14-1 [614 kB]
Get:301 http://172.17.0.1/private/ stretch-staging/main xserver-common all 2:1.16.4-1 [1758 kB]
Get:302 http://172.17.0.1/private/ stretch-staging/main xvfb armhf 2:1.16.4-1 [2359 kB]
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Current default time zone: 'Etc/UTC'
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Universal Time is now:  Sat May  2 11:10:04 UTC 2015.
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Unpacking sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up libssl1.0.0:armhf (1.0.1k-3) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up bash-completion (1:2.1-4) ...
Setting up libasprintf0c2:armhf (0.19.3-2) ...
Setting up libnettle4:armhf (2.7.1-5) ...
Setting up libhogweed2:armhf (2.7.1-5) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libp11-kit0:armhf (0.20.7-1) ...
Setting up libtasn1-6:armhf (4.4-3) ...
Setting up libgnutls-deb0-28:armhf (3.3.8-7) ...
Setting up libkeyutils1:armhf (1.5.9-5) ...
Setting up libkrb5support0:armhf (1.12.1+dfsg-19) ...
Setting up libk5crypto3:armhf (1.12.1+dfsg-19) ...
Setting up libkrb5-3:armhf (1.12.1+dfsg-19) ...
Setting up libgssapi-krb5-2:armhf (1.12.1+dfsg-19) ...
Setting up libidn11:armhf (1.30-1) ...
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Setting up libsasl2-2:armhf (2.1.26.dfsg1-13) ...
Setting up libldap-2.4-2:armhf (2.4.40+dfsg-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libsqlite3-0:armhf (3.8.7.4-1) ...
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Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up mime-support (3.58) ...
Setting up libexpat1:armhf (2.1.0-6) ...
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Setting up python (2.7.9-1) ...
Setting up libfreetype6:armhf (2.5.2-4) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.34-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
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Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
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Setting up libasound2-data (1.0.28-1) ...
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Setting up libasyncns0:armhf (0.8-5) ...
Setting up libglib2.0-0:armhf (2.42.1-1) ...
No schema files found: doing nothing.
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Setting up libpixman-1-0:armhf (0.32.6-3) ...
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Setting up libx11-data (2:1.6.2-3) ...
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Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.14.0-2.1) ...
Setting up libjpeg62-turbo:armhf (1:1.3.1-12) ...
Setting up libjasper1:armhf (1.900.1-debian1-2.4) ...
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Setting up libtiff5:armhf (4.0.3-12.3) ...
Setting up libgdk-pixbuf2.0-common (2.31.1-2) ...
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Setting up libgtk2.0-common (2.24.25-3) ...
Setting up libavahi-common-data:armhf (0.6.31-5) ...
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Setting up libavahi-client3:armhf (0.6.31-5) ...
Setting up libcups2:armhf (1.7.5-11) ...
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Setting up libpango-1.0-0:armhf (1.36.8-3) ...
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Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
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Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libcairo-script-interpreter2:armhf (1.14.0-2.1) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
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Setting up libflac8:armhf (1.3.1-2) ...
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Setting up libgfortran3:armhf (4.9.2-10) ...
Setting up libgif4:armhf (4.1.6-11) ...
Setting up libglapi-mesa:armhf (10.4.2-2) ...
Setting up libx11-xcb1:armhf (2:1.6.2-3) ...
Setting up libxcb-dri2-0:armhf (1.10-3) ...
Setting up libxcb-dri3-0:armhf (1.10-3) ...
Setting up libxcb-glx0:armhf (1.10-3) ...
Setting up libxcb-present0:armhf (1.10-3) ...
Setting up libxcb-sync1:armhf (1.10-3) ...
Setting up libxshmfence1:armhf (1.1-4+rpi1) ...
Setting up libxxf86vm1:armhf (1:1.1.3-1) ...
Setting up libgl1-mesa-glx:armhf (10.4.2-2) ...
Setting up libharfbuzz-gobject0:armhf (0.9.40-2) ...
Setting up libicu52:armhf (52.1-8) ...
Setting up libharfbuzz-icu0:armhf (0.9.40-2) ...
Setting up x11-common (1:7.7+7) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.9-1) ...
Setting up libijs-0.35:armhf (0.35-10) ...
Setting up liblcms2-2:armhf (2.6-3) ...
Setting up libnspr4:armhf (2:4.10.8-1) ...
Setting up libnss3:armhf (2:3.17.2-1.1) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up libpangoxft-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...

Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (2:8.35-3.3) ...
Setting up libpcsclite1:armhf (1.8.13-1) ...
Setting up libopenjpeg5:armhf (1:1.5.2-3) ...
Setting up libpoppler46:armhf (0.26.5-2) ...
Setting up libjson-c2:armhf (0.11-4) ...
Setting up libsm6:armhf (2:1.2.2-1) ...
Setting up libvorbis0a:armhf (1.3.4-2) ...
Setting up libvorbisenc2:armhf (1.3.4-2) ...
Setting up libsndfile1:armhf (1.0.25-9.1) ...
Setting up libxtst6:armhf (2:1.2.2-1) ...
Setting up libpulse0:armhf (5.0-13) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libtcl8.6:armhf (8.6.2+dfsg-2) ...
Setting up libtiffxx5:armhf (4.0.3-12.3) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.6:armhf (8.6.2-1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up libxmu6:armhf (2:1.1.2-1) ...
Setting up libxpm4:armhf (1:3.5.11-1) ...
Setting up libxaw7:armhf (2:1.0.12-2) ...
Setting up libxfont1:armhf (1:1.5.1-1) ...
Setting up libxkbfile1:armhf (1:1.0.8-1) ...
Setting up libxmuu1:armhf (2:1.1.2-1) ...
Setting up libzzip-0-13:armhf (0.13.62-3) ...
Setting up openssl (1.0.1k-3) ...
Setting up ca-certificates (20141019) ...
Setting up java-common (0.52) ...
Setting up tzdata-java (2015d-1) ...
Setting up poppler-data (0.4.7-1) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.3-2) ...
Setting up m4 (1.4.17-4) ...
Setting up libbison-dev:armhf (2:3.0.2.dfsg-2) ...
Setting up bison (2:3.0.2.dfsg-2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up gettext (0.19.3-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu3) ...
Setting up debhelper (9.20150101) ...
Setting up fonts-cabin (1.5-2) ...
Setting up fonts-comfortaa (2.003-1) ...
Setting up fonts-crosextra-caladea (20130214-1) ...
Setting up fonts-crosextra-carlito (20130920-1) ...
Setting up fonts-dejavu-extra (2.34-1) ...
Setting up fonts-ebgaramond (0.015+git20130628-3) ...
Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ...
Setting up fonts-font-awesome (4.2.0~dfsg-1) ...
Setting up fonts-freefont-otf (20120503-4) ...
Setting up fonts-freefont-ttf (20120503-4) ...
Setting up fonts-gfs-artemisia (1.1-5) ...
Setting up fonts-gfs-complutum (1.1-6) ...
Setting up fonts-gfs-didot (1.1-6) ...
Setting up fonts-gfs-neohellenic (1.1-6) ...
Setting up fonts-gfs-olga (1.1-5) ...
Setting up fonts-gfs-solomos (1.1-5) ...
Setting up fonts-inconsolata (001.010-5) ...
Setting up fonts-junicode (0.7.8-2) ...
Setting up fonts-linuxlibertine (5.3.0-2) ...
Setting up fonts-lobster (2.0-2) ...
Setting up fonts-lobstertwo (2.0-2) ...
Setting up fonts-oflb-asana-math (000.907-6) ...
Setting up fonts-sil-gentium (20081126:1.02-13) ...
Setting up fonts-sil-gentium-basic (1.1-7) ...
Setting up libgfortran-4.9-dev:armhf (4.9.2-10) ...
Setting up gfortran-4.9 (4.9.2-10) ...
Setting up gfortran (4:4.9.2-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libgirepository-1.0-1:armhf (1.42.0-2.2) ...
Setting up gir1.2-glib-2.0:armhf (1.42.0-2.2) ...
Setting up gir1.2-freedesktop:armhf (1.42.0-2.2) ...
Setting up gir1.2-pango-1.0:armhf (1.36.8-3) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-7) ...
Setting up libexpat1-dev:armhf (2.1.0-6) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libpng12-dev:armhf (1.2.50-2) ...
Setting up libfreetype6-dev (2.5.2-4) ...
Setting up pkg-config (0.28-1) ...
Setting up libfontconfig1-dev:armhf (2.11.0-6.3) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up x11proto-core-dev (7.0.27-1) ...
Setting up libxau-dev:armhf (1:1.0.8-1) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-1) ...
Setting up x11proto-input-dev (2.3.1-1) ...
Setting up x11proto-kb-dev (1.0.6-2) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libpthread-stubs0-dev:armhf (0.3-4) ...
Setting up libxcb1-dev:armhf (1.10-3) ...
Setting up libx11-dev:armhf (2:1.6.2-3) ...
Setting up x11proto-render-dev (2:0.11.1-2) ...
Setting up libxrender-dev:armhf (1:0.9.8-1) ...
Setting up x11proto-xext-dev (7.3.0-1) ...
Setting up libxext-dev:armhf (2:1.3.3-1) ...
Setting up libice-dev:armhf (2:1.0.9-1) ...
Setting up libsm-dev:armhf (2:1.2.2-1) ...
Setting up libpixman-1-dev (0.32.6-3) ...
Setting up libxcb-render0-dev:armhf (1.10-3) ...
Setting up libxcb-shm0-dev:armhf (1.10-3) ...
Setting up libglib2.0-data (2.42.1-1) ...
Setting up libglib2.0-bin (2.42.1-1) ...
Setting up libpcre3-dev:armhf (2:8.35-3.3) ...
Setting up libglib2.0-dev (2.42.1-1) ...
Setting up libcairo2-dev (1.14.0-2.1) ...
Setting up libcurl4-openssl-dev:armhf (7.42.1-1) ...
Setting up libjbig2dec0 (0.11+20120125-1) ...
Setting up libgs9-common (9.06~dfsg-2) ...
Setting up libharfbuzz-dev (0.9.40-2) ...
Setting up libintl-perl (1.23-1) ...
Setting up libjbig-dev:armhf (2.1-3.1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.3.1-12) ...
Setting up libjpeg-dev (1:1.3.1-12) ...
Setting up libkpathsea6 (2014.20140926.35254-6) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9+20140913-1) ...
Setting up libncurses5-dev:armhf (5.9+20140913-1) ...
Setting up libxft-dev (2.3.2-1) ...
Setting up libpango1.0-dev (1.36.8-3) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpotrace0 (1.12-1) ...
Setting up libptexenc1 (2014.20140926.35254-6) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up libsynctex1 (2014.20140926.35254-6) ...
Setting up libtext-unidecode-perl (1.22-1) ...
Setting up libtiff5-dev:armhf (4.0.3-12.3) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0116+dfsg-1+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:armhf (1:1.2.2-1) ...
Setting up libxt-dev:armhf (1:1.1.4-1) ...
Setting up mpack (1.6-8) ...
Setting up tex-common (5.03) ...
Setting up preview-latex-style (11.87-3+deb8u1) ...
Setting up tcl8.6 (8.6.2+dfsg-2) ...
Setting up tcl8.6-dev:armhf (8.6.2+dfsg-2) ...
Setting up texinfo (5.2.0.dfsg.1-6) ...
Running mktexlsr. This may take some time. ... done.
Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Setting up ttf-adf-universalis (0.20090423-2) ...
Setting up ttf-adf-gillius (0.20090423-2) ...
Setting up fonts-stix (1.1.1-1) ...
Setting up ttf-adf-accanthis (0.20090423-2) ...
Setting up tk8.6 (8.6.2-1) ...
Setting up tk8.6-dev:armhf (8.6.2-1) ...
Setting up x11-xkb-utils (7.7+1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up xfonts-encodings (1:1.0.4-2) ...
Setting up xfonts-utils (1:7.7+2) ...
Setting up xfonts-base (1:1.0.4) ...
Setting up xkb-data (2.14-1) ...
Setting up xserver-common (2:1.16.4-1) ...
Setting up xvfb (2:1.16.4-1) ...
Setting up libcupsimage2:armhf (1.7.5-11) ...
Setting up libcupsfilters1:armhf (1.0.61-5) ...
Setting up ca-certificates-java (20140324) ...
done.
Setting up default-jre-headless (2:1.7-52) ...
Setting up libgs9 (9.06~dfsg-2) ...
Setting up texlive-binaries (2014.20140926.35254-6) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Building format(s) --refresh.
	This may take some time... done.
Setting up texlive-base (2014.20141024-2) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Running mktexlsr. This may take some time... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for ca-certificates (20141019) ...
Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:ACEDICOM_Root.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem. Message:
  /etc/ssl/certs/AC_Ra?z_Certic?mara_S.A..pem (No such file or directory)
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem. Message:
  /etc/ssl/certs/Certinomis_-_Autorit?_Racine.pem (No such file or directory)
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:E-Tugra_Certification_Authority.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem. Message:
  /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?.pem (No such file or directory)
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message:
  /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory)
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem. Message:
  /etc/ssl/certs/T?B?TAK_UEKAE_K?k_Sertifika_Hizmet_Sa?lay?c?s?_-_S?r?m_3.pem (No such file or directory)
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:WoSign.pem
Adding debian:WoSign_China.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.
Setting up openjdk-7-jre-headless:armhf (7u75-2.5.4-3+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-7-jre:armhf (7u75-2.5.4-3+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52) ...
Setting up openjdk-7-jdk:armhf (7u75-2.5.4-3+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
Setting up default-jdk (2:1.7-52) ...
Processing triggers for tex-common (5.03) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-fonts-extra (2014.20141024-1) ...
Setting up texlive-fonts-recommended (2014.20141024-2) ...
Setting up texlive-generic-recommended (2014.20141024-2) ...
Setting up texlive-latex-base (2014.20141024-2) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-recommended (2014.20141024-2) ...
Setting up texlive-extra-utils (2014.20141024-1) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Setting up texlive-pictures (2014.20141024-2) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2014.20141024-1) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
Processing triggers for systemd (215-17) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 bash-completion_1:2.1-4 binutils_2.25-5 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 ca-certificates_20141019 ca-certificates-java_20140324 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debianutils_4.4 default-jdk_2:1.7-52 default-jre_2:1.7-52 default-jre-headless_2:1.7-52 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-crosextra-caladea_20130214-1 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.34-1 fonts-dejavu-extra_2.34-1 fonts-droid_1:4.4.4r2-6 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.2.0~dfsg-1 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_2.0-1 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-sil-gentium_20081126:1.02-13 fonts-sil-gentium-basic_1.1-7 fonts-stix_1.1.1-1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gfortran_4:4.9.2-2 gfortran-4.9_4.9.2-10 gir1.2-freedesktop_1.42.0-2.2 gir1.2-glib-2.0_1.42.0-2.2 gir1.2-pango-1.0_1.36.8-3 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.52 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10 libasound2_1.0.28-1 libasound2-data_1.0.28-1 libasprintf0c2_0.19.3-2 libasyncns0_0.8-5 libatk-wrapper-java_0.30.5-1 libatk-wrapper-java-jni_0.30.5-1 libatk1.0-0_2.14.0-1 libatk1.0-data_2.14.0-1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libavahi-client3_0.6.31-5 libavahi-common-data_0.6.31-5 libavahi-common3_0.6.31-5 libbison-dev_2:3.0.2.dfsg-2 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libbz2-dev_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcairo-gobject2_1.14.0-2.1 libcairo-script-interpreter2_1.14.0-2.1 libcairo2_1.14.0-2.1 libcairo2-dev_1.14.0-2.1 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcups2_1.7.5-11 libcupsfilters1_1.0.61-5 libcupsimage2_1.7.5-11 libcurl3_7.42.1-1 libcurl4-openssl-dev_7.42.1-1 libdatrie1_0.2.8-1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libelfg0_0.8.13-5 libexpat1_2.1.0-6 libexpat1-dev_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libflac8_1.3.1-2 libfontconfig1_2.11.0-6.3 libfontconfig1-dev_2.11.0-6.3 libfontenc1_1:1.1.2-1 libfreetype6_2.5.2-4 libfreetype6-dev_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.31.1-2+b1 libgdk-pixbuf2.0-common_2.31.1-2 libgfortran-4.9-dev_4.9.2-10 libgfortran3_4.9.2-10 libgif4_4.1.6-11 libgirepository-1.0-1_1.42.0-2.2 libgl1-mesa-glx_10.4.2-2 libglapi-mesa_10.4.2-2 libglib2.0-0_2.42.1-1 libglib2.0-bin_2.42.1-1 libglib2.0-data_2.42.1-1 libglib2.0-dev_2.42.1-1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.8-7 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libgraphite2-3_1.2.4-3 libgs9_9.06~dfsg-2 libgs9-common_9.06~dfsg-2 libgssapi-krb5-2_1.12.1+dfsg-19 libgtk2.0-0_2.24.25-3 libgtk2.0-common_2.24.25-3 libharfbuzz-dev_0.9.40-2 libharfbuzz-gobject0_0.9.40-2 libharfbuzz-icu0_0.9.40-2 libharfbuzz0b_0.9.40-2 libhogweed2_2.7.1-5 libice-dev_2:1.0.9-1 libice6_2:1.0.9-1 libicu52_52.1-8 libidn11_1.30-1 libijs-0.35_0.35-10 libintl-perl_1.23-1 libisl10_0.12.2-2 libjasper1_1.900.1-debian1-2.4 libjbig-dev_2.1-3.1 libjbig0_2.1-3.1 libjbig2dec0_0.11+20120125-1 libjpeg-dev_1:1.3.1-12 libjpeg62-turbo_1:1.3.1-12 libjpeg62-turbo-dev_1:1.3.1-12 libjson-c2_0.11-4 libk5crypto3_1.12.1+dfsg-19 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkpathsea6_2014.20140926.35254-6 libkrb5-3_1.12.1+dfsg-19 libkrb5support0_1.12.1+dfsg-19 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 liblcms2-2_2.6-3 libldap-2.4-2_2.4.40+dfsg-1 liblocale-gettext-perl_1.05-8+b1 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.08-1.2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncurses5-dev_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnettle4_2.7.1-5 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libnspr4_2:4.10.8-1 libnss3_2:3.17.2-1.1 libogg0_1.3.2-1 libopenjpeg5_1:1.5.2-3 libp11-kit0_0.20.7-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpango1.0-dev_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpangoxft-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.35-3.3 libpcre3-dev_2:8.35-3.3 libpcrecpp0_2:8.35-3.3 libpcsclite1_1.8.13-1 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpixman-1-dev_0.32.6-3 libpng12-0_1.2.50-2 libpng12-dev_1.2.50-2 libpoppler46_0.26.5-2 libpotrace0_1.12-1 libprocps3_2:3.3.9-9 libptexenc1_2014.20140926.35254-6 libpthread-stubs0-dev_0.3-4 libpulse0_5.0-13 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.9-2 libpython2.7-stdlib_2.7.9-2 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 librtmp1_2.4+20150115.gita107cef-1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.25.2-6 libsndfile1_1.0.25-9.1 libsqlite3-0_3.8.7.4-1 libss2_1.42.12-1.1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.1k-3 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsynctex1_2014.20140926.35254-6 libsystemd0_215-17 libtasn1-6_4.4-3 libtcl8.6_8.6.2+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-unidecode-perl_1.22-1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.21-1 libthai0_0.1.21-1 libtiff5_4.0.3-12.3 libtiff5-dev_4.0.3-12.3 libtiffxx5_4.0.3-12.3 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140913-1 libtinfo5_5.9+20140913-1 libtk8.6_8.6.2-1 libubsan0_4.9.2-10 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libvorbis0a_1.3.4-2 libvorbisenc2_1.3.4-2 libwrap0_7.6.q-25 libx11-6_2:1.6.2-3 libx11-data_2:1.6.2-3 libx11-dev_2:1.6.2-3 libx11-xcb1_2:1.6.2-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.12-2 libxcb-dri2-0_1.10-3 libxcb-dri3-0_1.10-3 libxcb-glx0_1.10-3 libxcb-present0_1.10-3 libxcb-render0_1.10-3 libxcb-render0-dev_1.10-3 libxcb-shm0_1.10-3 libxcb-shm0-dev_1.10-3 libxcb-sync1_1.10-3 libxcb1_1.10-3 libxcb1-dev_1.10-3 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1 libxdmcp6_1:1.1.2-1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxfont1_1:1.5.1-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.4-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.8-1 libxml-libxml-perl_2.0116+dfsg-1+b2 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml2_2.9.1+dfsg1-5 libxmu6_2:1.1.2-1 libxmuu1_2:1.1.2-1 libxpm4_1:3.5.11-1 libxrandr2_2:1.4.2-1 libxrender-dev_1:0.9.8-1 libxrender1_1:0.9.8-1 libxshmfence1_1.1-4+rpi1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.4-1 libxt6_1:1.1.4-1 libxtst6_2:1.2.2-1 libxxf86vm1_1:1.1.3-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.58 mount_2.25.2-6 mountall_2.54 mpack_1.6-8 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 openjdk-7-jdk_7u75-2.5.4-3+rpi1 openjdk-7-jre_7u75-2.5.4-3+rpi1 openjdk-7-jre-headless_7u75-2.5.4-3+rpi1 openssl_1.0.1k-3 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 pkg-config_0.28-1 plymouth_0.9.0-9 po-debconf_1.0.16+nmu3 poppler-data_0.4.7-1 preview-latex-style_11.87-3+deb8u1 procps_2:3.3.9-9 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.9-2 python2.7-minimal_2.7.9-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 shared-mime-info_1.3-1 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tcl8.6_8.6.2+dfsg-2 tcl8.6-dev_8.6.2+dfsg-2 tex-common_5.03 texinfo_5.2.0.dfsg.1-6 texlive-base_2014.20141024-2 texlive-binaries_2014.20140926.35254-6 texlive-extra-utils_2014.20141024-1 texlive-fonts-extra_2014.20141024-1 texlive-fonts-recommended_2014.20141024-2 texlive-generic-recommended_2014.20141024-2 texlive-latex-base_2014.20141024-2 texlive-latex-extra_2014.20141024-1 texlive-latex-recommended_2014.20141024-2 texlive-pictures_2014.20141024-2 tk8.6_8.6.2-1 tk8.6-dev_8.6.2-1 ttf-adf-accanthis_0.20090423-2 ttf-adf-gillius_0.20090423-2 ttf-adf-universalis_0.20090423-2 tzdata_2015d-1 tzdata-java_2015d-1 ucf_3.0030 udev_215-17 util-linux_2.25.2-6 x11-common_1:7.7+7 x11-xkb-utils_7.7+1 x11proto-core-dev_7.0.27-1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 xauth_1:1.0.9-1 xdg-utils_1.1.0~rc1+git20111210-7.4 xfonts-base_1:1.0.4 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+2 xkb-data_2.14-1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.16.4-1 xtrans-dev_1.3.5-1 xvfb_2:1.16.4-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Apr 22 01:54:59 2015 UTC using RSA key ID AB99A21A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_3.2.0-2.dsc
dpkg-source: info: extracting r-base in r-base-3.2.0
dpkg-source: info: unpacking r-base_3.2.0.orig.tar.gz
dpkg-source: info: applying r-base_3.2.0-2.diff.gz

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
OLDPWD=/usr/share/debootstrap/scripts
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-fc4d4d4a-c4e0-4130-bd38-1917dd7c18ed
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 44468 22
SSH_CONNECTION=172.17.0.6 44468 172.17.2.1 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 3.2.0-2
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build r-base-3.2.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build arm-linux-gnueabihf
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
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checking readline/readline.h usability... yes
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checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
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checking for arpa/inet.h... yes
checking dl.h usability... no
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checking elf.h usability... yes
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checking features.h usability... yes
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checking floatingpoint.h usability... no
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checking glob.h usability... yes
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checking pwd.h presence... yes
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checking sched.h usability... yes
checking sched.h presence... yes
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checking sys/param.h usability... yes
checking sys/param.h presence... yes
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checking sys/resource.h usability... yes
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checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking size of long double... 8
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
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checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes
checking whether PCRE support needs to be compiled... no
checking for curl-config... /usr/bin/curl-config
libcurl 7.42.1
checking if libcurl version >= 7.28.0... yes
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

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config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 77 compiler:       gfortran  -g -O2 -fstack-protector-strong

  C++ compiler:              g++  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  C++ 11 compiler:           g++  -std=c++11 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 90/95 compiler:    gfortran -g -O2 -fstack-protector-strong
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling

  Capabilities skipped:      ICU
  Options not enabled:       shared BLAS

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fstack-protector-strong"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrsl.f -o dtrsl.o
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1594:5: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
     ^
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -lblas -lgfortran -lm   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/bin/exec
mkdir -p -- /«PKGBUILDDIR»/lib
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -L../../lib -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/usr/lib/arm-linux-gnueabihf -lcurl -lR  
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/modules
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -ltiff -ljpeg -lpng -lz -lR -lm 
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -L../../../../../lib -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo  -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
Copying source files
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:79:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:125:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:86:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:134:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:79:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:125:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:86:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:134:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
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gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
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building system startup profile
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make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
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../../../../library/stats/libs/stats.so is unchanged
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make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
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make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
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make[5]: Nothing to be done for 'RfilesLazy'.
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
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make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
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make[5]: Nothing to be done for 'mklazycomp'.
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
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make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
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../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
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make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
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make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[4]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
installing parsed Rd
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
writing package indices
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[1]: Leaving directory '/«PKGBUILDDIR»'
/usr/bin/make javaconf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
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make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[2]: Entering directory '/«PKGBUILDDIR»'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.7.0_75
Java home path   : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include
detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.UAZIxZ'
gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG -I/usr/lib/jvm/java-7-openjdk-armhf/jre/../include     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/«PKGBUILDDIR»/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-7-openjdk-armhf/jre/lib/arm/server -ljvm -L/«PKGBUILDDIR»/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.UAZIxZ'


JAVA_HOME        : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java library path: $(JAVA_HOME)/lib/arm/server
JNI cpp flags    : -I$(JAVA_HOME)/../include
JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
Updating Java configuration in /«PKGBUILDDIR»
Done.

make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
touch make-arch-stamp
*** check ***
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/«PKGBUILDDIR»/debian/r-base-core
/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
installing doc ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
installing doc/html ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
installing doc/manual ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
installing share ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/intl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/unix; 						\
	rm -vf Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/«PKGBUILDDIR»/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/«PKGBUILDDIR»/src/unix'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
chmod a+x	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING  		
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING  	
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr			\
		rdocdir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ..........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX .............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2014/05/01>
Babel <3.9l> and hyphenation patterns for 2 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
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Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
Underfull \hbox (badness 1960) in paragraph at lines 141--149
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22]
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[23] [24] [25] [26] [27] [28] [29]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1841--1841
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[30] [31] [32]
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[48] [49] [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 3524--3526
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[71] [72] [73] [74]
Underfull \hbox (badness 2521) in paragraph at lines 4713--4715
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[90] [91] [92] [93]
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
Overfull \hbox (58.35893pt too wide) in paragraph at lines 6131--6134
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6263--6266
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is

Underfull \hbox (badness 10000) in paragraph at lines 6297--6300
[]\T1/ptm/m/n/10 The de-fault in-ter-nal method does not fol-low re-directed HT
TP URLs: both
[99] [100]
Underfull \hbox (badness 2635) in paragraph at lines 6437--6443
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move

Underfull \hbox (badness 2173) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by

Underfull \hbox (badness 4441) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it

Underfull \hbox (badness 1895) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha
r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6498--6505
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[102] [103]
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[105] [106] [107] [108] [109] [110] [111] [112]
Underfull \hbox (badness 4595) in paragraph at lines 7186--7189
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7222--7224
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

Underfull \hbox (badness 2351) in paragraph at lines 7247--7250
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[114] [115] [116] [117]
Underfull \hbox (badness 10000) in paragraph at lines 7497--7508
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
Underfull \hbox (badness 4479) in paragraph at lines 7569--7578
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7569--7578
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[143]
Underfull \hbox (badness 1394) in paragraph at lines 9179--9184
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[144] [145] [146] [147] [148]
Underfull \hbox (badness 1052) in paragraph at lines 9516--9521
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9516--9521
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[149] [150]
Underfull \hbox (badness 10000) in paragraph at lines 9654--9658
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[151] [152] [153] [154] [155] [156]
Underfull \hbox (badness 2150) in paragraph at lines 10058--10061
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
Underfull \hbox (badness 6396) in paragraph at lines 10072--10080
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 2409) in paragraph at lines 10113--10120
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11156--11160
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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Underfull \hbox (badness 2698) in paragraph at lines 11732--11741
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11732--11741
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
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Underfull \hbox (badness 2253) in paragraph at lines 12754--12756
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12869--12871
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13007--13010
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202] [203]
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[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13126--13129
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
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[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14191--14195
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
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Underfull \hbox (badness 2452) in paragraph at lines 14809--14813
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

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\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
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[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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[246]
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[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16634--16636
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
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[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17953--17955
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 18971--18975
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18971--18975
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19106--19113
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19106--19113
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19122--19127
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308]
Underfull \hbox (badness 1264) in paragraph at lines 19852--19857
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20606--20608
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
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[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21604--21610
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21765--21773
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22036--22039
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22036--22039
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22317--22320
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350]
Underfull \hbox (badness 10000) in paragraph at lines 22523--22529
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22523--22529
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
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[363] [364]
Underfull \hbox (badness 10000) in paragraph at lines 23403--23405
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367]
Underfull \hbox (badness 1199) in paragraph at lines 23617--23623
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23617--23623
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[368] [369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24182--24191
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24192--24195
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24211--24213
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24280--24290
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24291--24297
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24304--24309
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24314--24316
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24571--24574
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24595--24597
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24628--24633
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24634--24645
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24646--24649
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24656--24668
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24670--24677
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25306--25310
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400]
Underfull \hbox (badness 2726) in paragraph at lines 25867--25870
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412]
[413]
Underfull \hbox (badness 1052) in paragraph at lines 26686--26691
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424]
Underfull \hbox (badness 1533) in paragraph at lines 27414--27417
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436]
[437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448]
[449] [450]
Underfull \hbox (badness 10000) in paragraph at lines 29069--29073
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29069--29073
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29091--29093
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[451] [452] [453] [454] [455] [456] [457] [458] [459]
Underfull \hbox (badness 1655) in paragraph at lines 29636--29638
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470]
Underfull \hbox (badness 10000) in paragraph at lines 30304--30308
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[471] [472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30544--30551
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476]
Underfull \hbox (badness 2261) in paragraph at lines 30698--30703
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30725--30731
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[477]
Underfull \hbox (badness 10000) in paragraph at lines 30801--30806
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
[514] [515] [516] [517] [518] [519] [520]
Underfull \hbox (badness 1072) in paragraph at lines 33580--33584
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33585--33589
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[521]
Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 33922--33928
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 33922--33928
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538]
[539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550]
[551] [552] [553] [554]
Underfull \hbox (badness 3333) in paragraph at lines 35710--35715
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[555] [556] [557] [558] [559] [560] [561] [562] [563] [564]
Underfull \hbox (badness 1472) in paragraph at lines 36317--36320
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[565] [566] [567] [568] [569] [570] [571] [572] [573] [574]
Underfull \hbox (badness 2671) in paragraph at lines 36979--36982
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[575] [576] [577] [578] [579] [580]
Underfull \hbox (badness 10000) in paragraph at lines 37383--37386
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[581] [582]
Underfull \hbox (badness 10000) in paragraph at lines 37504--37508
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[583]
Underfull \hbox (badness 10000) in paragraph at lines 37566--37570
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595]
[596] [597] [598] [599] [600] [601] [602] [603]
Underfull \hbox (badness 1990) in paragraph at lines 38861--38869
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38861--38869
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[604] [605] [606] [607]
Underfull \hbox (badness 1515) in paragraph at lines 39133--39138
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[608] [609] [610] [611]
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[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[612] [613] [614] [615] [616] [617] [618] [619] [620]
Underfull \hbox (badness 3668) in paragraph at lines 39935--39937
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[621]
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[622] [623] [624]
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\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[625] [626] [627] [628]
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[630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633]
Underfull \hbox (badness 5417) in paragraph at lines 40751--40755
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[634]
Underfull \hbox (badness 10000) in paragraph at lines 40812--40816
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[635] [636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
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[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701] [702] [703] [704] [705] [706] [707]
Underfull \hbox (badness 6658) in paragraph at lines 3933--3935
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
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[710] [711] [712]
Underfull \vbox (badness 10000) has occurred while \output is active [713]
Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
[723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]
[735] [736] [737] [738] [739]
Underfull \hbox (badness 5175) in paragraph at lines 1065--1067
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[740] [741] [742] [743]
Underfull \hbox (badness 1852) in paragraph at lines 1262--1265
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[744] [745] [746]
Underfull \hbox (badness 1490) in paragraph at lines 1468--1473
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
Underfull \hbox (badness 2698) in paragraph at lines 1522--1525
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
Underfull \hbox (badness 10000) in paragraph at lines 1591--1595
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[749] [750] [751] [752]
Underfull \hbox (badness 1325) in paragraph at lines 1874--1884
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[753] [754]
Underfull \hbox (badness 10000) in paragraph at lines 1979--1981
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[755] [756] [757]
Underfull \hbox (badness 6758) in paragraph at lines 2140--2143
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[758] [759] [760] [761] [762] [763] [764] [765] [766]
Underfull \hbox (badness 10000) in paragraph at lines 2706--2707

[767] [768] [769] [770] [771] [772] [773]
Underfull \hbox (badness 1152) in paragraph at lines 3144--3146
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[774] [775] [776] [777] [778]
Underfull \hbox (badness 2856) in paragraph at lines 3465--3468
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[779] [780]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[792] [793]
Underfull \hbox (badness 5231) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
Underfull \hbox (badness 1789) in paragraph at lines 4540--4542
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
Underfull \hbox (badness 1377) in paragraph at lines 4590--4595
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4666--4673
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[797] [798]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
Underfull \hbox (badness 7344) in paragraph at lines 4855--4857
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5048--5055
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
Underfull \hbox (badness 1546) in paragraph at lines 5186--5194
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[806]
Underfull \hbox (badness 1648) in paragraph at lines 5263--5267
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[807] [808] [809] [810] [811] [812] [813]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[814]
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[816] [817] [818] [819]
Underfull \hbox (badness 1189) in paragraph at lines 6082--6084
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[820] [821]
Underfull \hbox (badness 10000) in paragraph at lines 6180--6182
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[822] [823] [824] [825]
Underfull \hbox (badness 3780) in paragraph at lines 6471--6477
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[826] [827] [828]
Underfull \hbox (badness 2680) in paragraph at lines 6667--6669
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[844] [845] [846] [847]
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[849] [850] [851] [852]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864]
[865] [866] [867] [868] [869]
Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881]
[882] [883] [884] [885] [886] [887] [888] [889] [890] [891]
Underfull \vbox (badness 3803) has occurred while \output is active [892]
Underfull \vbox (badness 10000) has occurred while \output is active [893]
[894] [895] [896]
Underfull \hbox (badness 1867) in paragraph at lines 3904--3908
[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[897] [898] [899] [900] [901] [902] [903] [904]
Underfull \hbox (badness 1924) in paragraph at lines 4351--4356
[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

Underfull \hbox (badness 2529) in paragraph at lines 4382--4385
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[905] [906] [907] [908] [909]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4738
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4732--4738
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[910] [911]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927]
[928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[951] [952]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964]
[965] [966] [967] [968] [969] [970] [971] [972] [973]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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                   \relax 
l.8709 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978] [979])
(./grid-pkg.tex [980]
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1130]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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[1166]
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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Underfull \hbox (badness 1087) in paragraph at lines 5640--5645
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1172] [1173] [1174] [1175]
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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l.6728 \aliasA{S4}{S3Part}{S4}
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l.7006 \aliasA{Logic}{S4groupGeneric}{Logic}
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l.7009 \aliasA{Ops}{S4groupGeneric}{Ops}
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l.7010 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1190]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1191] [1192] [1193]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
[1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215]
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[1227]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1228] [1229] [1230] [1231]) (./parallel-pkg.tex [1232]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
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[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1322] [1323]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1353] [1354] [1355] [1356]
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\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1357] [1358] [1359]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367]
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\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371]
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[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

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[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
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[1383] [1384]
Underfull \hbox (badness 10000) in paragraph at lines 7125--7128
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1385] [1386]
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1387] [1388] [1389] [1390]
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Underfull \hbox (badness 2626) in paragraph at lines 8760--8763
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1413] [1414] [1415] [1416] [1417]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
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[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1429] [1430] [1431] [1432]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436]
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1437]
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[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443] [1444]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

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\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
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estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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                   \relax 
l.11406 \aliasA{hat}{influence.measures}{hat}
                                              [1453] [1454]
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[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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Underfull \hbox (badness 4441) in paragraph at lines 12087--12089
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1464] [1465] [1466] [1467] [1468] [1469]
Underfull \hbox (badness 2894) in paragraph at lines 12428--12432
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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Underfull \hbox (badness 4518) in paragraph at lines 13123--13128
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 2503) in paragraph at lines 14971--14975
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
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Underfull \hbox (badness 1377) in paragraph at lines 18015--18020
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1561]
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1583] [1584]
Underfull \hbox (badness 5563) in paragraph at lines 19383--19385
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19386--19389
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
Underfull \hbox (badness 10000) in paragraph at lines 19780--19782
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20768--20774
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618]
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
Underfull \hbox (badness 1337) in paragraph at lines 22103--22109
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641]
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22896--22899
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
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Underfull \hbox (badness 10000) in paragraph at lines 23473--23476
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 23524--23528
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1653] [1654] [1655] [1656] [1657]
Underfull \hbox (badness 7667) in paragraph at lines 23791--23793
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1658] [1659] [1660] [1661]
Underfull \hbox (badness 3439) in paragraph at lines 23994--24000
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
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Underfull \hbox (badness 10000) in paragraph at lines 24542--24547
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1681] [1682] [1683] [1684] [1685] [1686]
Underfull \hbox (badness 3514) in paragraph at lines 25558--25563
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
Underfull \hbox (badness 3514) in paragraph at lines 25620--25625
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25677--25682
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 25738--25744
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25951--25956
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
Underfull \hbox (badness 3514) in paragraph at lines 26007--26012
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
Underfull \hbox (badness 3514) in paragraph at lines 26064--26069
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696]
Underfull \hbox (badness 3514) in paragraph at lines 26119--26124
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1697]
Underfull \hbox (badness 6691) in paragraph at lines 26188--26193
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706]
Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
Underfull \hbox (badness 5431) in paragraph at lines 27318--27320
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719]
Underfull \hbox (badness 5431) in paragraph at lines 27528--27531
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724] [1725]
Underfull \hbox (badness 1337) in paragraph at lines 27840--27844
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1726] [1727]
Underfull \hbox (badness 10000) in paragraph at lines 27957--27960
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1728] [1729]
Underfull \hbox (badness 1616) in paragraph at lines 28140--28143
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740]
[1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
Underfull \hbox (badness 10000) in paragraph at lines 29267--29271
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
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[1753] [1754]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]
Underfull \hbox (badness 1337) in paragraph at lines 30115--30119
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763] [1764]
Underfull \hbox (badness 5161) in paragraph at lines 30208--30210
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1765] [1766] [1767] [1768] [1769]
Underfull \hbox (badness 10000) in paragraph at lines 30572--30577
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
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h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
[1783] [1784] [1785] [1786] [1787] [1788] [1789]
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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Underfull \hbox (badness 1635) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1822]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
Underfull \hbox (badness 1014) in paragraph at lines 1148--1150
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1824] [1825] [1826]
Underfull \hbox (badness 10000) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1827] [1828] [1829]
Underfull \hbox (badness 7981) in paragraph at lines 1518--1522
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1524--1526
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
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l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1847--1852
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[1938] [1939]pdfTeX warning (ext4): destination with the same identifier (name{
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1955]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1959]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
[1963]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1964]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1965]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
[1966]
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
 / manual /
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see

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[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion
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Package rerunfilecheck Warning: File `fullrefman.out' has changed.
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
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Chapter 1.

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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
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g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
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t is guar-an-teed that
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[48] [49] [50] [51] [52] [53] [54] [55]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
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[71] [72] [73] [74]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[90] [91] [92] [93]
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
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[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is

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[]\T1/ptm/m/n/10 The de-fault in-ter-nal method does not fol-low re-directed HT
TP URLs: both
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move

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\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by

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\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it

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\T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha
r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or
[101]
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\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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igh-est, for
[113]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

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[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
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]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
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t/10 Group \T1/ptm/m/n/10 meth-ods for
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
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\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
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[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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Underfull \hbox (badness 4569) in paragraph at lines 11156--11160
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11156--11160
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[174] [175] [176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 2698) in paragraph at lines 11732--11741
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11732--11741
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[182] [183] [184] [185] [186] [187] [188] [189] [190] [191]
Underfull \hbox (badness 6236) in paragraph at lines 12376--12379
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12754--12756
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12825--12829
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12869--12871
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13007--13010
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202] [203]
Underfull \hbox (badness 10000) in paragraph at lines 13115--13119
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13126--13129
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
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Underfull \hbox (badness 3965) in paragraph at lines 13378--13382
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
Underfull \hbox (badness 4429) in paragraph at lines 14099--14102
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14185--14187
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14191--14195
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14809--14813
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14809--14813
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 14972--14977
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235]
Underfull \hbox (badness 6741) in paragraph at lines 15220--15224
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[236] [237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15526--15533
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15906--15908
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16386--16389
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16634--16636
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17197--17199
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17289--17305
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17697--17700
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17953--17955
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 18971--18975
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18971--18975
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19106--19113
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19106--19113
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19122--19127
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308]
Underfull \hbox (badness 1264) in paragraph at lines 19852--19857
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20606--20608
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21604--21610
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21765--21773
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22036--22039
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22036--22039
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22317--22320
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350]
Underfull \hbox (badness 10000) in paragraph at lines 22523--22529
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22523--22529
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[351] [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362]
[363] [364]
Underfull \hbox (badness 10000) in paragraph at lines 23403--23405
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367]
Underfull \hbox (badness 1199) in paragraph at lines 23617--23623
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23617--23623
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[368] [369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24182--24191
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24192--24195
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24211--24213
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24280--24290
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24291--24297
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24304--24309
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24314--24316
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24571--24574
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24595--24597
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24628--24633
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24634--24645
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24646--24649
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24656--24668
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24670--24677
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25306--25310
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400]
Underfull \hbox (badness 2726) in paragraph at lines 25867--25870
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412]
[413]
Underfull \hbox (badness 1052) in paragraph at lines 26686--26691
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424]
Underfull \hbox (badness 1533) in paragraph at lines 27414--27417
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436]
[437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448]
[449] [450]
Underfull \hbox (badness 10000) in paragraph at lines 29069--29073
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29069--29073
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29091--29093
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[451] [452] [453] [454] [455] [456] [457] [458] [459]
Underfull \hbox (badness 1655) in paragraph at lines 29636--29638
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470]
Underfull \hbox (badness 10000) in paragraph at lines 30304--30308
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[471] [472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30544--30551
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476]
Underfull \hbox (badness 2261) in paragraph at lines 30698--30703
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30725--30731
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[477]
Underfull \hbox (badness 10000) in paragraph at lines 30801--30806
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
[514] [515] [516] [517] [518] [519] [520]
Underfull \hbox (badness 1072) in paragraph at lines 33580--33584
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33585--33589
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[521]
Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 33922--33928
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 33922--33928
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538]
[539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550]
[551] [552] [553] [554]
Underfull \hbox (badness 3333) in paragraph at lines 35710--35715
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[555] [556] [557] [558] [559] [560] [561] [562] [563] [564]
Underfull \hbox (badness 1472) in paragraph at lines 36317--36320
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[565] [566] [567] [568] [569] [570] [571] [572] [573] [574]
Underfull \hbox (badness 2671) in paragraph at lines 36979--36982
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[575] [576] [577] [578] [579] [580]
Underfull \hbox (badness 10000) in paragraph at lines 37383--37386
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[581] [582]
Underfull \hbox (badness 10000) in paragraph at lines 37504--37508
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[583]
Underfull \hbox (badness 10000) in paragraph at lines 37566--37570
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595]
[596] [597] [598] [599] [600] [601] [602] [603]
Underfull \hbox (badness 1990) in paragraph at lines 38861--38869
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38861--38869
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[604] [605] [606] [607]
Underfull \hbox (badness 1515) in paragraph at lines 39133--39138
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[608] [609] [610] [611]
Underfull \hbox (badness 1917) in paragraph at lines 39363--39370
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[612] [613] [614] [615] [616] [617] [618] [619] [620]
Underfull \hbox (badness 3668) in paragraph at lines 39935--39937
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[621]
Underfull \hbox (badness 2401) in paragraph at lines 40040--40044
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[622] [623] [624]
Underfull \hbox (badness 2111) in paragraph at lines 40209--40214
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40225--40230
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[625] [626] [627] [628]
Underfull \vbox (badness 3803) has occurred while \output is active [629]
[630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633]
Underfull \hbox (badness 5417) in paragraph at lines 40751--40755
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[634]
Underfull \hbox (badness 10000) in paragraph at lines 40812--40816
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[635] [636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
Underfull \vbox (badness 1237) has occurred while \output is active [688]
[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701] [702] [703] [704] [705] [706] [707]
Underfull \hbox (badness 6658) in paragraph at lines 3933--3935
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
Underfull \vbox (badness 10000) has occurred while \output is active [709]
[710] [711] [712]
Underfull \vbox (badness 10000) has occurred while \output is active [713]
Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
[723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]
[735] [736] [737] [738] [739]
Underfull \hbox (badness 5175) in paragraph at lines 1065--1067
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[740] [741] [742] [743]
Underfull \hbox (badness 1852) in paragraph at lines 1262--1265
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[744] [745] [746]
Underfull \hbox (badness 1490) in paragraph at lines 1468--1473
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
Underfull \hbox (badness 2698) in paragraph at lines 1522--1525
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
Underfull \hbox (badness 10000) in paragraph at lines 1591--1595
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[749] [750] [751] [752]
Underfull \hbox (badness 1325) in paragraph at lines 1874--1884
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[753] [754]
Underfull \hbox (badness 10000) in paragraph at lines 1979--1981
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[755] [756] [757]
Underfull \hbox (badness 6758) in paragraph at lines 2140--2143
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[758] [759] [760] [761] [762] [763] [764] [765] [766]
Underfull \hbox (badness 10000) in paragraph at lines 2706--2707

[767] [768] [769] [770] [771] [772] [773]
Underfull \hbox (badness 1152) in paragraph at lines 3144--3146
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[774] [775] [776] [777] [778]
Underfull \hbox (badness 2856) in paragraph at lines 3465--3468
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[779] [780]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[792] [793]
Underfull \hbox (badness 5231) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
Underfull \hbox (badness 1789) in paragraph at lines 4540--4542
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
Underfull \hbox (badness 1377) in paragraph at lines 4590--4595
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4666--4673
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[797] [798]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
Underfull \hbox (badness 7344) in paragraph at lines 4855--4857
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[910] [911]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[951] [952]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8709 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978] [979])
(./grid-pkg.tex [980]
Chapter 6.

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[982] [983] [984] [985] [986]
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[1052] [1053]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1054] [1055] [1056] [1057]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086]
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1172] [1173] [1174] [1175]
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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                                                 [1190]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1191] [1192] [1193]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
[1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215]
[1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226]
[1227]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1228] [1229] [1230] [1231]) (./parallel-pkg.tex [1232]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291]
Underfull \hbox (badness 2503) in paragraph at lines 1325--1328
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
Underfull \hbox (badness 10000) in paragraph at lines 1504--1508
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305]
Underfull \hbox (badness 3965) in paragraph at lines 2164--2166
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
Underfull \hbox (badness 3965) in paragraph at lines 2506--2508
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323]
Underfull \hbox (badness 2503) in paragraph at lines 3319--3322
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334]
[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 3989) in paragraph at lines 4539--4546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352]
Underfull \hbox (badness 2556) in paragraph at lines 5138--5141
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5155--5157
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1353] [1354] [1355] [1356]
Underfull \hbox (badness 1142) in paragraph at lines 5396--5408
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1357] [1358] [1359]
Underfull \hbox (badness 2503) in paragraph at lines 5535--5539
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5596--5601
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367]
Underfull \hbox (badness 8132) in paragraph at lines 6038--6043
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371]
Underfull \hbox (badness 7081) in paragraph at lines 6313--6316
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6317--6319
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]
[1383] [1384]
Underfull \hbox (badness 10000) in paragraph at lines 7125--7128
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1385] [1386]
Underfull \hbox (badness 10000) in paragraph at lines 7262--7265
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1387] [1388] [1389] [1390]
Underfull \vbox (badness 3803) has occurred while \output is active [1391]
[1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402]
[1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411]
Underfull \hbox (badness 2626) in paragraph at lines 8760--8763
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412]
Underfull \hbox (badness 2503) in paragraph at lines 8860--8864
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1413] [1414] [1415] [1416] [1417]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9194--9196
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]
Underfull \hbox (badness 1019) in paragraph at lines 9860--9863
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1429] [1430] [1431] [1432]
Underfull \hbox (badness 4518) in paragraph at lines 10121--10126
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436]
Underfull \hbox (badness 2142) in paragraph at lines 10463--10466
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1437]
Underfull \hbox (badness 1253) in paragraph at lines 10482--10485
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
Underfull \hbox (badness 1708) in paragraph at lines 10544--10548
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443] [1444]
Underfull \hbox (badness 1694) in paragraph at lines 10940--10943
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10959--10968
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11406 \aliasA{hat}{influence.measures}{hat}
                                              [1453] [1454]
Underfull \hbox (badness 1484) in paragraph at lines 11529--11531
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463]
Underfull \hbox (badness 4441) in paragraph at lines 12087--12089
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12094--12096
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1464] [1465] [1466] [1467] [1468] [1469]
Underfull \hbox (badness 2894) in paragraph at lines 12428--12432
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480]
Underfull \hbox (badness 4518) in paragraph at lines 13123--13128
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490]
Underfull \hbox (badness 4518) in paragraph at lines 13770--13775
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501]
[1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510]
Underfull \hbox (badness 2503) in paragraph at lines 14971--14975
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 1418) in paragraph at lines 15480--15486
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529]
[1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540]
[1541] [1542]
Underfull \vbox (badness 3803) has occurred while \output is active [1543]
[1544] [1545]
Underfull \hbox (badness 2359) in paragraph at lines 17104--17106
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1546]
Underfull \vbox (badness 10000) has occurred while \output is active [1547]
Underfull \vbox (badness 10000) has occurred while \output is active [1548]
[1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559]
[1560]
Underfull \hbox (badness 1377) in paragraph at lines 18015--18020
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18020--18023
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18033--18037
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1561]
Underfull \hbox (badness 2662) in paragraph at lines 18041--18045
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1562] [1563]
Underfull \vbox (badness 3803) has occurred while \output is active [1564]
[1565] [1566] [1567] [1568] [1569] [1570] [1571]
Underfull \hbox (badness 1337) in paragraph at lines 18657--18660
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
[1583] [1584]
Underfull \hbox (badness 5563) in paragraph at lines 19383--19385
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19386--19389
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1585] [1586] [1587] [1588] [1589] [1590]
Underfull \hbox (badness 2503) in paragraph at lines 19753--19756
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
Underfull \hbox (badness 10000) in paragraph at lines 19780--19782
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602]
[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20768--20774
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618]
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
Underfull \hbox (badness 1337) in paragraph at lines 22103--22109
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641]
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22896--22899
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652]
Underfull \hbox (badness 10000) in paragraph at lines 23473--23476
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 23524--23528
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1653] [1654] [1655] [1656] [1657]
Underfull \hbox (badness 7667) in paragraph at lines 23791--23793
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1658] [1659] [1660] [1661]
Underfull \hbox (badness 3439) in paragraph at lines 23994--24000
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669]
Underfull \hbox (badness 10000) in paragraph at lines 24542--24547
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680]
[1681] [1682] [1683] [1684] [1685] [1686]
Underfull \hbox (badness 3514) in paragraph at lines 25558--25563
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
Underfull \hbox (badness 3514) in paragraph at lines 25620--25625
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25677--25682
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 25738--25744
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25951--25956
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
Underfull \hbox (badness 3514) in paragraph at lines 26007--26012
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
Underfull \hbox (badness 3514) in paragraph at lines 26064--26069
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696]
Underfull \hbox (badness 3514) in paragraph at lines 26119--26124
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1697]
Underfull \hbox (badness 6691) in paragraph at lines 26188--26193
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706]
Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
Underfull \hbox (badness 5431) in paragraph at lines 27318--27320
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719]
Underfull \hbox (badness 5431) in paragraph at lines 27528--27531
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724] [1725]
Underfull \hbox (badness 1337) in paragraph at lines 27840--27844
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1726] [1727]
Underfull \hbox (badness 10000) in paragraph at lines 27957--27960
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1728] [1729]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
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[1753] [1754]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763] [1764]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
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[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

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[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1827] [1828] [1829]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide
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l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1869] [1870]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1871] [1872]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
[1877]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1878] [1879]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1880] [1881] [1882] [1883] [1884] [1885]
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1886]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1887]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1904] [1905]
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1906]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1907] [1908] [1909] [1910]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3188--3194
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1926]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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                                                   [1940] [1941] [1942]
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[1954]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1955]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1956] [1957] [1958]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1959]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1962]
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
[1963]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1964]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1965]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
[1966]
Underfull \hbox (badness 10000) in paragraph at lines 5812--5817
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977]
[1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 10000) in paragraph at lines 7011--7013
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1987] [1988] [1989]
Underfull \hbox (badness 10000) in paragraph at lines 7173--7176
[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

Underfull \hbox (badness 10000) in paragraph at lines 7173--7176
[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
[1990] [1991] [1992] [1993] [1994] [1995]
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006]
[2007]
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2008] [2009]
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
Underfull \hbox (badness 3977) in paragraph at lines 377--380
[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 507--513
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1114--1117
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22]
Underfull \hbox (badness 4072) in paragraph at lines 1331--1337
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[23] [24] [25] [26] [27] [28] [29]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1841--1841
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[30] [31] [32]
Underfull \hbox (badness 10000) in paragraph at lines 2026--2028
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 3524--3526
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70]
[71] [72] [73] [74]
Underfull \hbox (badness 2521) in paragraph at lines 4713--4715
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89]
[90] [91] [92] [93]
Underfull \hbox (badness 2096) in paragraph at lines 5932--5945
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
Overfull \hbox (58.35893pt too wide) in paragraph at lines 6131--6134
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6263--6266
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is

Underfull \hbox (badness 10000) in paragraph at lines 6297--6300
[]\T1/ptm/m/n/10 The de-fault in-ter-nal method does not fol-low re-directed HT
TP URLs: both
[99] [100]
Underfull \hbox (badness 2635) in paragraph at lines 6437--6443
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move

Underfull \hbox (badness 2173) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by

Underfull \hbox (badness 4441) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it

Underfull \hbox (badness 1895) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha
r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6498--6505
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[102] [103]
Underfull \vbox (badness 10000) has occurred while \output is active [104]
[105] [106] [107] [108] [109] [110] [111] [112]
Underfull \hbox (badness 4595) in paragraph at lines 7186--7189
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7222--7224
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

Underfull \hbox (badness 2351) in paragraph at lines 7247--7250
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[114] [115] [116] [117]
Underfull \hbox (badness 10000) in paragraph at lines 7497--7508
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
Underfull \hbox (badness 4479) in paragraph at lines 7569--7578
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7569--7578
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
[119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130]
[131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
[143]
Underfull \hbox (badness 1394) in paragraph at lines 9179--9184
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[144] [145] [146] [147] [148]
Underfull \hbox (badness 1052) in paragraph at lines 9516--9521
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9516--9521
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[149] [150]
Underfull \hbox (badness 10000) in paragraph at lines 9654--9658
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[151] [152] [153] [154] [155] [156]
Underfull \hbox (badness 2150) in paragraph at lines 10058--10061
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
Underfull \hbox (badness 6396) in paragraph at lines 10072--10080
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 2409) in paragraph at lines 10113--10120
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169]
[170] [171] [172] [173]
Underfull \hbox (badness 4569) in paragraph at lines 11156--11160
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11156--11160
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[174] [175] [176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 2698) in paragraph at lines 11732--11741
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11732--11741
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[182] [183] [184] [185] [186] [187] [188] [189] [190] [191]
Underfull \hbox (badness 6236) in paragraph at lines 12376--12379
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12754--12756
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12825--12829
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12869--12871
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13007--13010
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202] [203]
Underfull \hbox (badness 10000) in paragraph at lines 13115--13119
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13126--13129
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[204] [205] [206] [207]
Underfull \hbox (badness 3965) in paragraph at lines 13378--13382
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
Underfull \hbox (badness 4429) in paragraph at lines 14099--14102
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14185--14187
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14191--14195
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220] [221] [222] [223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14809--14813
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14809--14813
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 14972--14977
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235]
Underfull \hbox (badness 6741) in paragraph at lines 15220--15224
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[236] [237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15526--15533
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15906--15908
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16386--16389
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16634--16636
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17197--17199
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17289--17305
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17697--17700
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17953--17955
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289] [290]
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 18971--18975
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18971--18975
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19106--19113
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19106--19113
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19122--19127
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308]
Underfull \hbox (badness 1264) in paragraph at lines 19852--19857
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20606--20608
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21604--21610
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21765--21773
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22036--22039
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22036--22039
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22317--22320
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350]
Underfull \hbox (badness 10000) in paragraph at lines 22523--22529
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22523--22529
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22533--22536
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[351] [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362]
[363] [364]
Underfull \hbox (badness 10000) in paragraph at lines 23403--23405
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367]
Underfull \hbox (badness 1199) in paragraph at lines 23617--23623
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23617--23623
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[368] [369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24182--24191
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24192--24195
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24211--24213
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24280--24290
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24291--24297
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24304--24309
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24314--24316
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24558--24564
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24571--24574
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24595--24597
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24628--24633
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24634--24645
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24646--24649
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24656--24668
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24656--24668
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24670--24677
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24670--24677
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24988--24992
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25306--25310
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400]
Underfull \hbox (badness 2726) in paragraph at lines 25867--25870
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412]
[413]
Underfull \hbox (badness 1052) in paragraph at lines 26686--26691
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424]
Underfull \hbox (badness 1533) in paragraph at lines 27414--27417
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436]
[437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448]
[449] [450]
Underfull \hbox (badness 10000) in paragraph at lines 29069--29073
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29069--29073
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29091--29093
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[451] [452] [453] [454] [455] [456] [457] [458] [459]
Underfull \hbox (badness 1655) in paragraph at lines 29636--29638
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470]
Underfull \hbox (badness 10000) in paragraph at lines 30304--30308
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[471] [472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30544--30551
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30544--30551
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476]
Underfull \hbox (badness 2261) in paragraph at lines 30698--30703
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30725--30731
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[477]
Underfull \hbox (badness 10000) in paragraph at lines 30801--30806
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489]
[490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501]
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
[514] [515] [516] [517] [518] [519] [520]
Underfull \hbox (badness 1072) in paragraph at lines 33580--33584
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33585--33589
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[521]
Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33613--33619
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33626--33633
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 33922--33928
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 33922--33928
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538]
[539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550]
[551] [552] [553] [554]
Underfull \hbox (badness 3333) in paragraph at lines 35710--35715
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[555] [556] [557] [558] [559] [560] [561] [562] [563] [564]
Underfull \hbox (badness 1472) in paragraph at lines 36317--36320
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[565] [566] [567] [568] [569] [570] [571] [572] [573] [574]
Underfull \hbox (badness 2671) in paragraph at lines 36979--36982
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[575] [576] [577] [578] [579] [580]
Underfull \hbox (badness 10000) in paragraph at lines 37383--37386
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[581] [582]
Underfull \hbox (badness 10000) in paragraph at lines 37504--37508
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[583]
Underfull \hbox (badness 10000) in paragraph at lines 37566--37570
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595]
[596] [597] [598] [599] [600] [601] [602] [603]
Underfull \hbox (badness 1990) in paragraph at lines 38861--38869
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38861--38869
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[604] [605] [606] [607]
Underfull \hbox (badness 1515) in paragraph at lines 39133--39138
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[608] [609] [610] [611]
Underfull \hbox (badness 1917) in paragraph at lines 39363--39370
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[612] [613] [614] [615] [616] [617] [618] [619] [620]
Underfull \hbox (badness 3668) in paragraph at lines 39935--39937
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[621]
Underfull \hbox (badness 2401) in paragraph at lines 40040--40044
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[622] [623] [624]
Underfull \hbox (badness 2111) in paragraph at lines 40209--40214
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40225--40230
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[625] [626] [627] [628]
Underfull \vbox (badness 3803) has occurred while \output is active [629]
[630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40659--40664
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633]
Underfull \hbox (badness 5417) in paragraph at lines 40751--40755
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[634]
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[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[635] [636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
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Underfull \hbox (badness 6658) in paragraph at lines 3933--3935
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
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[710] [711] [712]
Underfull \vbox (badness 10000) has occurred while \output is active [713]
Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
[723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]
[735] [736] [737] [738] [739]
Underfull \hbox (badness 5175) in paragraph at lines 1065--1067
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[740] [741] [742] [743]
Underfull \hbox (badness 1852) in paragraph at lines 1262--1265
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[744] [745] [746]
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\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[749] [750] [751] [752]
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\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[753] [754]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[758] [759] [760] [761] [762] [763] [764] [765] [766]
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[774] [775] [776] [777] [778]
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[779] [780]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791]
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[792] [793]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[797] [798]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[806]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[807] [808] [809] [810] [811] [812] [813]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[814]
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[816] [817] [818] [819]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[820] [821]
Underfull \hbox (badness 10000) in paragraph at lines 6180--6182
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[822] [823] [824] [825]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[826] [827] [828]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[844] [845] [846] [847]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864]
[865] [866] [867] [868] [869]
Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881]
[882] [883] [884] [885] [886] [887] [888] [889] [890] [891]
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[897] [898] [899] [900] [901] [902] [903] [904]
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[905] [906] [907] [908] [909]
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[910] [911]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927]
[928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[951] [952]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964]
[965] [966] [967] [968] [969] [970] [971] [972] [973]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[974]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8709 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978] [979])
(./grid-pkg.tex [980]
Chapter 6.

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[982] [983] [984] [985] [986]
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[987] [988] [989] [990] [991] [992] [993] [994] [995] [996]
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007]
[1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018]
[1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029]
[1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040]
[1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051]
[1052] [1053]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1054] [1055] [1056] [1057]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068]
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086]
Underfull \hbox (badness 7649) in paragraph at lines 6326--6329
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1128] [1129]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1130]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1131] [1132] [1133] [1134] [1135] [1136] [1137]
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1138] [1139] [1140] [1141] [1142]
Underfull \hbox (badness 10000) in paragraph at lines 3658--3663
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1167] [1168] [1169] [1170] [1171]
Underfull \hbox (badness 1087) in paragraph at lines 5640--5645
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1172] [1173] [1174] [1175]
Underfull \hbox (badness 2221) in paragraph at lines 5866--5871
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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                   \relax 
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                   \relax 
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                                                 [1190]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1191] [1192] [1193]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
[1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215]
[1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226]
[1227]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1228] [1229] [1230] [1231]) (./parallel-pkg.tex [1232]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283]
Underfull \hbox (badness 1412) in paragraph at lines 844--846
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
Underfull \hbox (badness 10000) in paragraph at lines 1504--1508
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1322] [1323]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334]
[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 3989) in paragraph at lines 4539--4546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352]
Underfull \hbox (badness 2556) in paragraph at lines 5138--5141
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5155--5157
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1353] [1354] [1355] [1356]
Underfull \hbox (badness 1142) in paragraph at lines 5396--5408
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1357] [1358] [1359]
Underfull \hbox (badness 2503) in paragraph at lines 5535--5539
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367]
Underfull \hbox (badness 8132) in paragraph at lines 6038--6043
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371]
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[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6317--6319
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
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[1383] [1384]
Underfull \hbox (badness 10000) in paragraph at lines 7125--7128
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1385] [1386]
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1387] [1388] [1389] [1390]
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Underfull \hbox (badness 2626) in paragraph at lines 8760--8763
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1413] [1414] [1415] [1416] [1417]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]
Underfull \hbox (badness 1019) in paragraph at lines 9860--9863
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1429] [1430] [1431] [1432]
Underfull \hbox (badness 4518) in paragraph at lines 10121--10126
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436]
Underfull \hbox (badness 2142) in paragraph at lines 10463--10466
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1437]
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[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
Underfull \hbox (badness 1708) in paragraph at lines 10544--10548
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443] [1444]
Underfull \hbox (badness 1694) in paragraph at lines 10940--10943
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10959--10968
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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<to be read again> 
                   \relax 
l.11406 \aliasA{hat}{influence.measures}{hat}
                                              [1453] [1454]
Underfull \hbox (badness 1484) in paragraph at lines 11529--11531
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463]
Underfull \hbox (badness 4441) in paragraph at lines 12087--12089
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12094--12096
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1464] [1465] [1466] [1467] [1468] [1469]
Underfull \hbox (badness 2894) in paragraph at lines 12428--12432
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480]
Underfull \hbox (badness 4518) in paragraph at lines 13123--13128
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490]
Underfull \hbox (badness 4518) in paragraph at lines 13770--13775
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501]
[1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510]
Underfull \hbox (badness 2503) in paragraph at lines 14971--14975
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518]
Underfull \hbox (badness 1418) in paragraph at lines 15480--15486
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[1541] [1542]
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[1544] [1545]
Underfull \hbox (badness 2359) in paragraph at lines 17104--17106
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1546]
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[1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559]
[1560]
Underfull \hbox (badness 1377) in paragraph at lines 18015--18020
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18020--18023
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18033--18037
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1561]
Underfull \hbox (badness 2662) in paragraph at lines 18041--18045
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[1565] [1566] [1567] [1568] [1569] [1570] [1571]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1583] [1584]
Underfull \hbox (badness 5563) in paragraph at lines 19383--19385
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19386--19389
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1585] [1586] [1587] [1588] [1589] [1590]
Underfull \hbox (badness 2503) in paragraph at lines 19753--19756
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
Underfull \hbox (badness 10000) in paragraph at lines 19780--19782
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20768--20774
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618]
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641]
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22896--22899
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652]
Underfull \hbox (badness 10000) in paragraph at lines 23473--23476
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 23524--23528
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1653] [1654] [1655] [1656] [1657]
Underfull \hbox (badness 7667) in paragraph at lines 23791--23793
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1658] [1659] [1660] [1661]
Underfull \hbox (badness 3439) in paragraph at lines 23994--24000
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669]
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[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680]
[1681] [1682] [1683] [1684] [1685] [1686]
Underfull \hbox (badness 3514) in paragraph at lines 25558--25563
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25677--25682
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 25738--25744
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25951--25956
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
Underfull \hbox (badness 3514) in paragraph at lines 26007--26012
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
Underfull \hbox (badness 3514) in paragraph at lines 26064--26069
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696]
Underfull \hbox (badness 3514) in paragraph at lines 26119--26124
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1697]
Underfull \hbox (badness 6691) in paragraph at lines 26188--26193
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706]
Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26712--26715
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
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Underfull \hbox (badness 5431) in paragraph at lines 27318--27320
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719]
Underfull \hbox (badness 5431) in paragraph at lines 27528--27531
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724] [1725]
Underfull \hbox (badness 1337) in paragraph at lines 27840--27844
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1726] [1727]
Underfull \hbox (badness 10000) in paragraph at lines 27957--27960
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1728] [1729]
Underfull \hbox (badness 1616) in paragraph at lines 28140--28143
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740]
[1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
Underfull \hbox (badness 10000) in paragraph at lines 29267--29271
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1749] [1750] [1751]
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[1753] [1754]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]
Underfull \hbox (badness 1337) in paragraph at lines 30115--30119
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763] [1764]
Underfull \hbox (badness 5161) in paragraph at lines 30208--30210
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1765] [1766] [1767] [1768] [1769]
Underfull \hbox (badness 10000) in paragraph at lines 30572--30577
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
[1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
[1783] [1784] [1785] [1786] [1787] [1788] [1789]
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Underfull \hbox (badness 1546) in paragraph at lines 656--663
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1792] [1793] [1794] [1795]
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Underfull \hbox (badness 3375) in paragraph at lines 1397--1400
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

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[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1809] [1810]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1822]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
Underfull \hbox (badness 1014) in paragraph at lines 1148--1150
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1824] [1825] [1826]
Underfull \hbox (badness 10000) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1827] [1828] [1829]
Underfull \hbox (badness 7981) in paragraph at lines 1518--1522
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1524--1526
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1847--1852
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1844] [1845] [1846] [1847]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 10000) in paragraph at lines 3538--3540
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1863] [1864] [1865] [1866] [1867] [1868]
Underfull \hbox (badness 1838) in paragraph at lines 3912--3918
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1869] [1870]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3992--3997
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1871] [1872]
Underfull \hbox (badness 1688) in paragraph at lines 4135--4147
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
[1877]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1878] [1879]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1880] [1881] [1882] [1883] [1884] [1885]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1886]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
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/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
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dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
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org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
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[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
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(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
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[3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
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hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62] [63]
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[64] [65]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

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/Home[] 
[66] [67]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (Concept index) [78]
(Environment variable index) [79] [80] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22]
Chapter 6 [23]
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hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62] [63]
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, run

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tents/Home[] 

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/Home[] 
[66] [67]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (./R-admin.vrs) (Concept index) [78]
(./R-admin.cps) (Environment variable index) [79] (./R-admin.ens) [80] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
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) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
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[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22]
Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62] [63]
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 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[64] [65]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

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/Home[] 
[66] [67]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (./R-admin.vrs) (Concept index) [78]
(./R-admin.cps) (Environment variable index) [79] (./R-admin.ens) [80] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
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(Acknowledgements)
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Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A
[31] (Function and variable index) [32] (Concept index) [33] [34] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
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defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
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cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
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(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
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@textrm or even R. How-ever, it seems more com-mon to use the @texttt inst[] @t
extrm di-rec-tory,

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@textrm for ex-am-ple @texttt WriteXLS/inst/Perl[]@textrm , @texttt NMF/inst/m-
files[]@textrm , @texttt RnavGraph/inst/tcl[]@textrm ,
[18] [19] [20] [21] [22]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines
[23]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[27] [28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54] [55]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[56] [57] [58] [59]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[60] [61] [62] Chapter 2 [63] [64] [65] [66] [67] [68] [69] [70] [71] [72]
[73] [74] [75] [76]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[77] [78] [79] [80]
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[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[81] [82] Chapter 3 [83] [84] [85] [86] [87] [88]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[89] [90] [91] Chapter 4 [92] [93] [94]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[95]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[96]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[97] [98] [99] [100] [101] [102]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[103]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[104]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[105]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[106] [107] [108] Chapter 5 [109] [110] [111] [112] [113] [114] [115] [116]
[117] [118] [119] [120] [121]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[122] [123] [124] [125] [126] [127] [128] [129] [130] [131]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[132]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[133] [134] [135] [136] [137] [138]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[139] [140]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[141]
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s)) {[] 

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a)));[] 

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s)) {[] 
[142] [143] [144]
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xit);[] 
[145]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[146]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[147] Chapter 6 [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]
[158] [159] [160] [161] [162] [163] [164] [165] [166] Chapter 7 [167] [168]
Chapter 8 [169] [170] [171]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[172]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[173] [174] [175]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[176] [177] [178] [179] [180] [181]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or

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(Function and variable index) [182] (Concept index) [183] [184] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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Output written on R-exts.pdf (187 pages, 829832 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
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entering extended mode
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 492--495
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Underfull \hbox (badness 8189) in paragraph at lines 1404--1411
@textrm or even R. How-ever, it seems more com-mon to use the @texttt inst[] @t
extrm di-rec-tory,

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@textrm for ex-am-ple @texttt WriteXLS/inst/Perl[]@textrm , @texttt NMF/inst/m-
files[]@textrm , @texttt RnavGraph/inst/tcl[]@textrm ,
[18] [19] [20] [21] [22]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines
[23]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[27] [28]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[29] [30] [31]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54] [55]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[56] [57] [58] [59]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[60] [61] [62] Chapter 2 [63] [64] [65] [66] [67] [68] [69] [70] [71] [72]
[73] [74] [75] [76]
Underfull \hbox (badness 10000) in paragraph at lines 5946--5953
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[77] [78] [79] [80]
Underfull \hbox (badness 10000) in paragraph at lines 6265--6269
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[81] Chapter 3 [82] [83] [84] [85] [86] [87] [88]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[89] [90] [91] Chapter 4 [92] [93] [94]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[95]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[96]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[97] [98] [99] [100] [101] [102]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[103]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[104]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[105]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[106] [107] [108] Chapter 5 [109] [110] [111] [112] [113] [114] [115] [116]
[117] [118] [119] [120] [121]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[122] [123] [124] [125] [126] [127] [128] [129] [130] [131]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[132]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[133] [134] [135] [136] [137] [138]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[139] [140]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[141]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[142] [143] [144]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[145]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[146]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[147] Chapter 6 [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]
[158] [159] [160] [161] [162] [163] [164] [165] [166] Chapter 7 [167] [168]
Chapter 8 [169] [170] [171]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[172]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[173] [174] [175]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 10000) in paragraph at lines 13852--13856
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [182] (./R-exts.vrs [183] [184] [185])
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Overfull \vbox (1.73251pt too high) has occurred while \output is active
(Concept index) [186] (./R-exts.cps [187]) [188] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
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></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/
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Output written on R-exts.pdf (195 pages, 892195 bytes).
Transcript written on R-exts.log.
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
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@textrm or even R. How-ever, it seems more com-mon to use the @texttt inst[] @t
extrm di-rec-tory,

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@textrm for ex-am-ple @texttt WriteXLS/inst/Perl[]@textrm , @texttt NMF/inst/m-
files[]@textrm , @texttt RnavGraph/inst/tcl[]@textrm ,
[18] [19] [20] [21] [22]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines
[23]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[27] [28]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[29] [30] [31]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54] [55]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[56] [57] [58] [59]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[60] [61] [62] Chapter 2 [63] [64] [65] [66] [67] [68] [69] [70] [71] [72]
[73] [74] [75] [76]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[77] [78] [79] [80]
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[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[81] Chapter 3 [82] [83] [84] [85] [86] [87] [88]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[89] [90] [91] Chapter 4 [92] [93] [94]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[95]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[96]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[97] [98] [99] [100] [101] [102]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[103]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[104]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[105]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[106] [107] [108] Chapter 5 [109] [110] [111] [112] [113] [114] [115] [116]
[117] [118] [119] [120] [121]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[122] [123] [124] [125] [126] [127] [128] [129] [130] [131]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[132]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[133] [134] [135] [136] [137] [138]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[139] [140]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[141]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[142] [143] [144]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[145]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[146]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[147] Chapter 6 [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]
[158] [159] [160] [161] [162] [163] [164] [165] [166] Chapter 7 [167] [168]
Chapter 8 [169] [170] [171]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[172]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[173] [174] [175]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[176] [177] [178] [179] [180] [181]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [182] (./R-exts.vrs [183] [184] [185])
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(Concept index) [186] (./R-exts.cps [187]) [188] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
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share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
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</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/s
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Output written on R-exts.pdf (195 pages, 892213 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Underfull \hbox (badness 8189) in paragraph at lines 1404--1411
@textrm or even R. How-ever, it seems more com-mon to use the @texttt inst[] @t
extrm di-rec-tory,

Underfull \hbox (badness 10000) in paragraph at lines 1404--1411
@textrm for ex-am-ple @texttt WriteXLS/inst/Perl[]@textrm , @texttt NMF/inst/m-
files[]@textrm , @texttt RnavGraph/inst/tcl[]@textrm ,
[18] [19] [20] [21] [22]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines
[23]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[27] [28]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[29] [30] [31]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54] [55]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[56] [57] [58] [59]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[60] [61] [62] Chapter 2 [63] [64] [65] [66] [67] [68] [69] [70] [71] [72]
[73] [74] [75] [76]
Underfull \hbox (badness 10000) in paragraph at lines 5946--5953
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[77] [78] [79] [80]
Underfull \hbox (badness 10000) in paragraph at lines 6265--6269
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[81] Chapter 3 [82] [83] [84] [85] [86] [87] [88]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[89] [90] [91] Chapter 4 [92] [93] [94]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[95]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[96]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[97] [98] [99] [100] [101] [102]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[103]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[104]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[105]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[106] [107] [108] Chapter 5 [109] [110] [111] [112] [113] [114] [115] [116]
[117] [118] [119] [120] [121]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[122] [123] [124] [125] [126] [127] [128] [129] [130] [131]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[132]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[133] [134] [135] [136] [137] [138]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[139] [140]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[141]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[142] [143] [144]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[145]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[146]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[147] Chapter 6 [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]
[158] [159] [160] [161] [162] [163] [164] [165] [166] Chapter 7 [167] [168]
Chapter 8 [169] [170] [171]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[172]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[173] [174] [175]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[176] [177] [178] [179] [180] [181]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [182] (./R-exts.vrs [183] [184] [185])
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Overfull \vbox (1.73251pt too high) has occurred while \output is active
(Concept index) [186] (./R-exts.cps [187]) [188] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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[77] [78] [79] [80] Chapter 13 [81]
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es()[] @textrm and
[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101]
Appendix F [102] [103] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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es()[] @textrm and
[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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Output written on R-intro.pdf (112 pages, 633822 bytes).
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
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[49] Chapter 8 [50] [51] [52] [53] [54]
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tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (Concept index) [65] [66] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
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[49] Chapter 8 [50] [51] [52] [53] [54]
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tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65])
(Concept index) [66] (./R-ints.cps) [67] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/t
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exmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
t12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb
>
Output written on R-ints.pdf (72 pages, 430933 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3617--3626
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3617--3626
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3989--3997
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65])
(Concept index) [66] (./R-ints.cps) [67] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
t12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb
>
Output written on R-ints.pdf (72 pages, 430938 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (Concept Index) [60] Appendix A [61]
[62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 331189 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 380238 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 380243 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr  \
		infodir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/«PKGBUILDDIR»/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/*.gz
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.6% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 70.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info.gz:	 67.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.7% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir		\
	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir.old	
removed '/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /«PKGBUILDDIR»/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 1928
-rw-rw-r-- 1 root root 1210122 May  2 12:28 libRmath.a
-rwxrwxr-x 1 root root  757984 May  2 12:28 libRmath.so
drwxr-xr-x 1 root root      22 May  2 12:46 pkgconfig
'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/«PKGBUILDDIR»/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc; \
	cat /«PKGBUILDDIR»/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
dh_bash-completion	
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /«PKGBUILDDIR»/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /«PKGBUILDDIR»/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /«PKGBUILDDIR»/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS 
dh_strip	--sourcedir=/«PKGBUILDDIR»/debian/r-base-core --dbg-package=r-base-core-dbg
Unknown option: sourcedir
dh_strip 	--sourcedir=/«PKGBUILDDIR»/debian/r-mathlib
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libXext.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXss.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libICE.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/stats/libs/stats.so debian/r-base-core/usr/lib/R/modules/lapack.so debian/r-base-core/usr/lib/R/lib/libR.so were not linked against libgfortran.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libSM.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/grDevices/libs/cairo.so debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libglib-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-mathlib/usr/lib/libRmath.so.1.0.0 was not linked against libgomp.so.1 (it uses none of the library's symbols)
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `r-mathlib' in `../r-mathlib_3.2.0-2_armhf.deb'.
dpkg-deb: building package `r-base-core' in `../r-base-core_3.2.0-2_armhf.deb'.
dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_3.2.0-2_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-base_3.2.0-2_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-base-3.2.0
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150502-1249

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


r-base_3.2.0-2_armhf.changes:
─────────────────────────────

Format: 1.8
Date: Tue, 21 Apr 2015 20:38:57 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: armhf
Version: 3.2.0-2
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Closes: 782764
Changes:
 r-base (3.2.0-2) unstable; urgency=low
 .
   * debian/r-cran.mk: Apply (modified) patch by Philipp Rinn to set
     built-time (if unset) based on timestamp in debian/changelog
     							(Closes: #782764)
Checksums-Sha1:
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 76e929c9b455abcd4de37f4c7b5e29f09de1566a 1302640 r-mathlib_3.2.0-2_armhf.deb
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Checksums-Sha256:
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Files:
 17c57f1a039f45427e113a230f50b8e9 20030394 gnu-r optional r-base-core_3.2.0-2_armhf.deb
 d3159373c3df75cfdec8a706fbacf932 1302640 gnu-r optional r-mathlib_3.2.0-2_armhf.deb
 f131bee211c7f429c826409bd9d0fa2d 2953262 debug extra r-base-core-dbg_3.2.0-2_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


r-base-core_3.2.0-2_armhf.deb
─────────────────────────────

 new debian package, version 2.0.
 size 20030394 bytes: control archive=29290 bytes.
     118 bytes,     6 lines      conffiles            
    2745 bytes,    44 lines      control              
   69415 bytes,   878 lines      md5sums              
    2396 bytes,    70 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
     667 bytes,    34 lines   *  preinst              #!/bin/sh
     689 bytes,    26 lines   *  prerm                #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 3.2.0-2
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 31111
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libcurl3 (>= 7.28.0), libgfortran3 (>= 4.3), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libice6 (>= 1:1.0.0), libjpeg62-turbo (>= 1.3.1), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3 (>= 1:8.35), libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libsm6, libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxext6, libxss1, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0)
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2015-05-02 12:47 ./
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-rw-r--r-- root/root     13294 2015-05-02 11:33 ./etc/bash_completion.d/R
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lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/libR.so -> R/lib/libR.so
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/doc/r-base-core/doc -> ../../R/doc
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf


r-mathlib_3.2.0-2_armhf.deb
───────────────────────────

 new debian package, version 2.0.
 size 1302640 bytes: control archive=2024 bytes.
    1780 bytes,    39 lines      control              
    1219 bytes,    18 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
 Source: r-base
 Version: 3.2.0-2
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 1630
 Depends: libc6 (>= 2.4), libgomp1 (>= 4.2.1)
 Recommends: r-base-core (= 3.2.0-2), r-base-dev (= 3.2.0-2)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

drwxr-xr-x root/root         0 2015-05-02 12:47 ./
drwxr-xr-x root/root         0 2015-05-02 12:46 ./usr/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/
drwxr-xr-x root/root         0 2015-05-02 12:27 ./usr/share/lintian/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       231 2015-05-02 11:33 ./usr/share/lintian/overrides/r-mathlib
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root      3026 2015-05-02 11:33 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root     20761 2015-05-02 11:33 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1370 2012-04-15 22:05 ./usr/share/doc/r-mathlib/examples/test.c
-rw-r--r-- root/root     35933 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.0.gz
-rw-r--r-- root/root    108753 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.1.gz
-rw-r--r-- root/root    229656 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.2.gz
-rw-r--r-- root/root     96602 2015-03-18 23:04 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz
-rw-r--r-- root/root     55620 2015-04-07 22:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz
-rw-r--r-- root/root    350952 2015-05-02 12:20 ./usr/share/doc/r-mathlib/NEWS.pdf.gz
-rw-r--r-- root/root    229869 2015-05-02 12:19 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2014-07-07 22:15 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root     28504 2015-05-02 11:33 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     51421 2015-05-02 12:19 ./usr/share/doc/r-mathlib/changelog.gz
drwxr-xr-x root/root         0 2015-05-02 12:46 ./usr/include/
-rw-r--r-- root/root     17619 2015-05-02 12:46 ./usr/include/Rmath.h
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2015-05-02 12:46 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       173 2015-05-02 12:28 ./usr/lib/pkgconfig/libRmath.pc
-rw-r--r-- root/root    145220 2015-05-02 12:47 ./usr/lib/libRmath.so.1.0.0
-rw-r--r-- root/root    290322 2015-05-02 12:47 ./usr/lib/libRmath.a
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/libRmath.so -> libRmath.so.1
lrwxrwxrwx root/root         0 2015-05-02 12:47 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0


r-base-core-dbg_3.2.0-2_armhf.deb
─────────────────────────────────

 new debian package, version 2.0.
 size 2953262 bytes: control archive=1954 bytes.
    1765 bytes,    38 lines      control              
    1861 bytes,    23 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.2.0-2
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 10125
 Depends: r-base-core (= 3.2.0-2), r-base-dev (= 3.2.0-2)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

drwxr-xr-x root/root         0 2015-05-02 12:47 ./
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/
drwxr-xr-x root/root         0 2015-05-02 12:27 ./usr/share/lintian/
drwxr-xr-x root/root         0 2015-05-02 12:27 ./usr/share/lintian/overrides/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/share/doc/r-base-core-dbg/
-rw-r--r-- root/root     20761 2015-05-02 11:33 ./usr/share/doc/r-base-core-dbg/copyright
-rw-r--r-- root/root     28504 2015-05-02 11:33 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz
-rw-r--r-- root/root     51421 2015-05-02 12:19 ./usr/share/doc/r-base-core-dbg/changelog.gz
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/
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drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/
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drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/lib/
-rw-r--r-- root/root   5657216 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/modules/
-rw-r--r-- root/root    216236 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/modules/internet.so
-rw-r--r-- root/root     90304 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/modules/lapack.so
-rw-r--r-- root/root    245412 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/modules/R_X11.so
-rw-r--r-- root/root    110500 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/modules/R_de.so
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/tools/
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drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/utils/
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-rw-r--r-- root/root     94604 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/utils/libs/utils.so
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/grDevices/
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drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/splines/
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-rw-r--r-- root/root     15572 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/splines/libs/splines.so
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/tcltk/
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drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/parallel/
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-rw-r--r-- root/root     41468 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/library/parallel/libs/parallel.so
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/bin/
-rw-r--r-- root/root     16396 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/bin/Rscript
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-rw-r--r-- root/root      7972 2015-05-02 12:47 ./usr/lib/debug/usr/lib/R/bin/exec/R
-rw-r--r-- root/root    614340 2015-05-02 12:47 ./usr/lib/debug/usr/lib/libRmath.so.1.0.0
drwxr-xr-x root/root         0 2015-05-02 12:47 ./usr/lib/debug/usr/bin/
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 277032
Build-Time: 4540
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 1942
Job: r-base_3.2.0-2
Machine Architecture: armhf
Package: r-base
Package-Time: 6554
Source-Version: 3.2.0-2
Space: 277032
Status: successful
Version: 3.2.0-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20150502-1249
Build needed 01:49:14, 277032k disc space

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