Build log for r-base (3.1.1-1) on armhf

r-base → 3.1.1-1 → armhf → 2014-07-21 08:25:25

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ r-base 3.1.1-1 (armhf)                                     21 Jul 2014 06:37 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: r-base
Version: 3.1.1-1
Source Version: 3.1.1-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/r-base-_2g7us/r-base-3.1.1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-base-_2g7us' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-665da153-54fd-480c-8e33-43d43d7d7362' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7412 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8388 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.8 MB in 28s (553 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
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Checking available source versions...

Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
Need to get 28.7 MB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1 (dsc) [2147 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1 (tar) [28.6 MB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1 (diff) [83.4 kB]
Fetched 28.7 MB in 6s (4276 kB/s)
Download complete and in download only mode

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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-6IBpx2/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded.
Need to get 0 B/818 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11827 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package `sbuild-build-depends-r-base-dummy' in `/«BUILDDIR»/resolver-yYgJgC/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-base build dependencies (apt-based resolver)                       │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-dejavu-core
  fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra
  fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm-dev
  libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm2 libelfg0 libexpat1
  libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev libfontenc1
  libfreetype6 libfreetype6-dev libgcrypt11 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-4.9-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgnutls-deb0-28
  libgpg-error0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2
  libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev libice6 libicu52
  libidn11 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0
  libjbig2dec0 libjpeg8 libjpeg8-dev libjson-c2 libk5crypto3 libkeyutils1
  libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3
  libogg0 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-0 libpng12-dev libpoppler46 libpotrace0 libptexenc1
  libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm-dev
  libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libsynctex1 libsystemd-id128-0
  libsystemd-journal0 libtasn1-6 libtcl8.5 libtext-unidecode-perl libthai-data
  libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libtk8.5
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7
  libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0
  libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0
  libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0
  libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
  libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1
  libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes-dev libxfixes3 libxfont1 libxft-dev libxft2 libxi6
  libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1
  libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1
  libzzip-0-13 m4 man-db mesa-common-dev mime-support mpack openjdk-7-jdk
  openjdk-7-jre openjdk-7-jre-headless openssl pkg-config po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal shared-mime-info tcl8.5 tcl8.5-dev tex-common texinfo
  texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5
  tk8.5-dev ttf-adf-accanthis ttf-adf-gillius tzdata-java ucf x11-common
  x11-xkb-utils x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev
  x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev
  x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev
  x11proto-xf86vidmode-dev xauth xdg-utils xfonts-base xfonts-encodings
  xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb
  zlib1g-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc
  gfortran-doc gfortran-4.9-doc libgfortran3-dbg groff equivs
  libasound2-plugins alsa-utils libcairo2-doc cups-common rng-tools
  libglib2.0-doc gnutls-bin krb5-doc krb5-user librsvg2-common gvfs libice-doc
  libintl-xs-perl libjasper-runtime liblcms2-utils liblzma-doc ncurses-doc
  ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
  ttf-arphic-bkai00mp libpango1.0-doc imagemagick pcscd pulseaudio libsm-doc
  libxcb-doc libxext-doc libxt-doc less www-browser mail-transport-agent inews
  openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns
  sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei
  ttf-wqy-zenhei fonts-indic libmail-box-perl poppler-utils ghostscript
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk
  python2.7-doc binfmt-support tcl-tclreadline tcl8.5-doc texinfo-doc-nonfree
  gv postscript-viewer perl-tk xpdf-reader pdf-viewer fragmaster latexmk
  purifyeps chktex dvidvi lacheck latexdiff xindy dvipng cm-super
  python-pygments libfile-which-perl dot2tex libtcltk-ruby tk8.5-doc gvfs-bin
  xfs xserver
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libgl1-mesa-dri hicolor-icon-theme libgtk2.0-bin krb5-locales tcpd
  libx11-doc libxml-sax-expat-perl xml-core libgnome2-0 libgnomevfs2-0
  libgconf2-4 icedtea-7-jre-jamvm libmail-sendmail-perl lmodern ruby wish
  texlive-fonts-extra-doc texlive-fonts-recommended-doc tipa tex-gyre
  texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc
  prosper texlive-pictures-doc prerex xterm x-terminal-emulator
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-dejavu-core
  fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra
  fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm-dev
  libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm2 libelfg0 libexpat1
  libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev libfontenc1
  libfreetype6 libfreetype6-dev libgcrypt11 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-4.9-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgnutls-deb0-28
  libgpg-error0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2
  libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0
  libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev libice6 libicu52
  libidn11 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0
  libjbig2dec0 libjpeg8 libjpeg8-dev libjson-c2 libk5crypto3 libkeyutils1
  libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3
  libogg0 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-0 libpng12-dev libpoppler46 libpotrace0 libptexenc1
  libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm-dev
  libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libsynctex1 libsystemd-id128-0
  libsystemd-journal0 libtasn1-6 libtcl8.5 libtext-unidecode-perl libthai-data
  libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libtk8.5
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7
  libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0
  libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0
  libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0
  libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
  libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1
  libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes-dev libxfixes3 libxfont1 libxft-dev libxft2 libxi6
  libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1
  libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1
  libzzip-0-13 m4 man-db mesa-common-dev mime-support mpack openjdk-7-jdk
  openjdk-7-jre openjdk-7-jre-headless openssl pkg-config po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal sbuild-build-depends-r-base-dummy shared-mime-info tcl8.5
  tcl8.5-dev tex-common texinfo texlive-base texlive-binaries
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-generic-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures tk8.5 tk8.5-dev ttf-adf-accanthis
  ttf-adf-gillius tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev
  x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev
  x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xauth
  xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
0 upgraded, 323 newly installed, 0 to remove and 10 not upgraded.
Need to get 410 MB/410 MB of archives.
After this operation, 1155 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.3.0-1 [21.1 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1h-3 [830 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-6 [962 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.7.1-1 [964 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main bash-completion all 1:2.1-4 [182 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.2-3 [29.3 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.13-0.1 [58.0 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-4 [233 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libnettle4 armhf 2.7.1-2 [177 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libhogweed2 armhf 2.7.1-2 [116 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.2-5 [66.1 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libtasn1-6 armhf 4.0-2 [42.0 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libgnutls-deb0-28 armhf 3.2.15-3 [609 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.9-4 [10.8 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.12.1+dfsg-4 [53.0 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.12.1+dfsg-4 [105 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.12.1+dfsg-4 [247 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-4 [123 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libidn11 armhf 1.28-2 [154 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.19-1 [232 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.5-2 [357 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libwrap0 armhf 7.6.q-25 [55.5 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-4 [698 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.8-1 [347 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.8-1 [1110 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main fonts-droid all 1:4.3-3 [3038 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main fonts-lato all 1.104-4 [244 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libasound2-data all 1.0.28-1 [64.8 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libasound2 armhf 1.0.28-1 [316 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libasyncns0 armhf 0.8-5 [11.4 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.40.0-3 [2247 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libatk1.0-data all 2.12.0-1 [179 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libatk1.0-0 armhf 2.12.0-1 [83.1 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.50-1 [180 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.5.2-1 [397 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0030 [69.7 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.11.0-5 [273 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.11.0-5 [310 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.54-1 [25.9 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 10.2.3-1 [66.2 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.10-3 [38.1 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-2 [126 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-2 [657 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-2 [163 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.10-3 [12.1 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libxcb-dri3-0 armhf 1.10-3 [10.6 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.10-3 [23.8 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libxcb-present0 armhf 1.10-3 [10.8 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libxcb-sync1 armhf 1.10-3 [13.2 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libxshmfence1 armhf 1.1-2 [6736 B]
Get:60 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 10.2.3-1 [136 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.32.6-1 [422 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.16-2+rpi1 [894 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d1-1 [108 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libjasper1 armhf 1.900.1-debian1-2 [109 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2.1 [26.8 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libtiff5 armhf 4.0.3-9 [191 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-common all 2.30.7-1 [293 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-0 armhf 2.30.7-1 [143 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-common all 2.24.24-1 [3128 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libavahi-common-data armhf 0.6.31-4 [98.4 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libavahi-common3 armhf 0.6.31-4 [48.2 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libavahi-client3 armhf 0.6.31-4 [49.8 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libcups2 armhf 1.7.4-1 [250 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.20-3 [157 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.8-1 [29.1 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.20-3 [41.6 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.11.0-5 [401 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.36.3-1 [265 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0b armhf 0.9.29-1 [435 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.36.3-1 [199 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.36.3-1 [189 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main libxcursor1 armhf 1:1.1.14-1 [34.7 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main libxi6 armhf 2:1.7.2-1 [76.8 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libxinerama1 armhf 2:1.1.3-1 [16.9 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main libxrandr2 armhf 2:1.4.2-1 [31.7 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main shared-mime-info armhf 1.3-1 [630 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-0 armhf 2.24.24-1 [1965 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main openssl armhf 1.0.1h-3 [659 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main ca-certificates all 20140325 [193 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libnspr4 armhf 2:4.10.6-1 [94.1 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libnss3 armhf 2:3.16.3-1 [898 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main ca-certificates-java all 20140324 [13.7 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main tzdata-java all 2014e-1 [82.1 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main java-common all 0.52 [136 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main liblcms2-2 armhf 2.6-3 [113 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main libpcsclite1 armhf 1.8.11-3 [52.6 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre-headless armhf 7u55-2.4.7-2 [37.3 MB]
Get:104 http://172.17.0.1/private/ jessie-staging/main default-jre-headless armhf 2:1.7-52 [9114 B]
Get:105 http://172.17.0.1/private/ jessie-staging/main libgif4 armhf 4.1.6-11 [40.4 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+7 [287 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main libjson-c2 armhf 0.11-4 [22.7 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.2-1 [31.2 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libogg0 armhf 1.3.2-1 [17.2 kB]
Get:111 http://172.17.0.1/private/ jessie-staging/main libflac8 armhf 1.3.0-2 [95.0 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main libvorbis0a armhf 1.3.2-1.4 [81.5 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main libvorbisenc2 armhf 1.3.2-1.4 [73.7 kB]
Get:114 http://172.17.0.1/private/ jessie-staging/main libsndfile1 armhf 1.0.25-9 [209 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main libsystemd-id128-0 armhf 204-14 [27.6 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main libsystemd-journal0 armhf 204-14 [62.8 kB]
Get:117 http://172.17.0.1/private/ jessie-staging/main libxtst6 armhf 2:1.2.2-1 [26.8 kB]
Get:118 http://172.17.0.1/private/ jessie-staging/main libpulse0 armhf 5.0-2+b2 [214 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre armhf 7u55-2.4.7-2 [158 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main default-jre armhf 2:1.7-52 [966 B]
Get:121 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java all 0.30.4-4 [30.1 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java-jni armhf 0.30.4-4 [26.1 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main libcairo-gobject2 armhf 1.12.16-2+rpi1 [537 kB]
Get:124 http://172.17.0.1/private/ jessie-staging/main liblzo2-2 armhf 2.06-1.2 [55.9 kB]
Get:125 http://172.17.0.1/private/ jessie-staging/main libcairo-script-interpreter2 armhf 1.12.16-2+rpi1 [564 kB]
Get:126 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:127 http://172.17.0.1/private/ jessie-staging/main libcupsimage2 armhf 1.7.4-1 [113 kB]
Get:128 http://172.17.0.1/private/ jessie-staging/main libcupsfilters1 armhf 1.0.54-3+b1 [93.1 kB]
Get:129 http://172.17.0.1/private/ jessie-staging/main libdrm-nouveau2 armhf 2.4.54-1 [21.1 kB]
Get:130 http://172.17.0.1/private/ jessie-staging/main libdrm-omap1 armhf 2.4.54-1 [13.5 kB]
Get:131 http://172.17.0.1/private/ jessie-staging/main libdrm-radeon1 armhf 2.4.54-1 [28.0 kB]
Get:132 http://172.17.0.1/private/ jessie-staging/main libelfg0 armhf 0.8.13-5 [55.7 kB]
Get:133 http://172.17.0.1/private/ jessie-staging/main libfontenc1 armhf 1:1.1.2-1 [23.9 kB]
Get:134 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.9.0-7 [154 kB]
Get:135 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-gobject0 armhf 0.9.29-1 [340 kB]
Get:136 http://172.17.0.1/private/ jessie-staging/main libicu52 armhf 52.1-4 [6522 kB]
Get:137 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-icu0 armhf 0.9.29-1 [336 kB]
Get:138 http://172.17.0.1/private/ jessie-staging/main libijs-0.35 armhf 0.35-10 [18.5 kB]
Get:139 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:140 http://172.17.0.1/private/ jessie-staging/main libpangoxft-1.0-0 armhf 1.36.3-1 [185 kB]
Get:141 http://172.17.0.1/private/ jessie-staging/main libpaper1 armhf 1.1.24+nmu3 [20.7 kB]
Get:142 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-5 [124 kB]
Get:143 http://172.17.0.1/private/ jessie-staging/main libopenjpeg5 armhf 1.5.2-2 [93.5 kB]
Get:144 http://172.17.0.1/private/ jessie-staging/main libpoppler46 armhf 0.26.2-2 [1073 kB]
Get:145 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:146 http://172.17.0.1/private/ jessie-staging/main libtcl8.5 armhf 8.5.15-4 [649 kB]
Get:147 http://172.17.0.1/private/ jessie-staging/main libtiffxx5 armhf 4.0.3-9 [74.0 kB]
Get:148 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:149 http://172.17.0.1/private/ jessie-staging/main libtk8.5 armhf 8.5.15-4 [646 kB]
Get:150 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:151 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:152 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.2-1 [50.8 kB]
Get:153 http://172.17.0.1/private/ jessie-staging/main libxpm4 armhf 1:3.5.11-1 [41.7 kB]
Get:154 http://172.17.0.1/private/ jessie-staging/main libxaw7 armhf 2:1.0.12-2 [159 kB]
Get:155 http://172.17.0.1/private/ jessie-staging/main libxcb-randr0 armhf 1.10-3 [18.7 kB]
Get:156 http://172.17.0.1/private/ jessie-staging/main libxcb-shape0 armhf 1.10-3 [11.0 kB]
Get:157 http://172.17.0.1/private/ jessie-staging/main libxcb-xfixes0 armhf 1.10-3 [13.8 kB]
Get:158 http://172.17.0.1/private/ jessie-staging/main libxfont1 armhf 1:1.4.99.901-1 [115 kB]
Get:159 http://172.17.0.1/private/ jessie-staging/main libxkbfile1 armhf 1:1.0.8-1 [74.9 kB]
Get:160 http://172.17.0.1/private/ jessie-staging/main libxmuu1 armhf 2:1.1.2-1 [22.8 kB]
Get:161 http://172.17.0.1/private/ jessie-staging/main libzzip-0-13 armhf 0.13.62-2 [51.0 kB]
Get:162 http://172.17.0.1/private/ jessie-staging/main poppler-data all 0.4.6-5 [1489 kB]
Get:163 http://172.17.0.1/private/ jessie-staging/main libjbig-dev armhf 2.0-2.1 [10.7 kB]
Get:164 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.19-1 [57.7 kB]
Get:165 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.2-3 [111 kB]
Get:166 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.56 [35.5 kB]
Get:167 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.8-1 [1834 kB]
Get:168 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:169 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.8-1 [243 kB]
Get:170 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.8-1 [39.8 kB]
Get:171 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.8-1 [19.2 kB]
Get:172 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.8-1 [150 kB]
Get:173 http://172.17.0.1/private/ jessie-staging/main libbison-dev armhf 2:3.0.2.dfsg-2 [425 kB]
Get:174 http://172.17.0.1/private/ jessie-staging/main bison armhf 2:3.0.2.dfsg-2 [854 kB]
Get:175 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.2-3 [1133 kB]
Get:176 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:177 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu3 [220 kB]
Get:178 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20140613 [692 kB]
Get:179 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jdk armhf 7u55-2.4.7-2 [13.6 MB]
Get:180 http://172.17.0.1/private/ jessie-staging/main default-jdk armhf 2:1.7-52 [966 B]
Get:181 http://172.17.0.1/private/ jessie-staging/main fonts-cabin all 1.5-2 [139 kB]
Get:182 http://172.17.0.1/private/ jessie-staging/main fonts-comfortaa all 2.003-1 [133 kB]
Get:183 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-extra all 2.34-1 [1771 kB]
Get:184 http://172.17.0.1/private/ jessie-staging/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB]
Get:185 http://172.17.0.1/private/ jessie-staging/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB]
Get:186 http://172.17.0.1/private/ jessie-staging/main fonts-font-awesome all 4.1.0~dfsg-1 [375 kB]
Get:187 http://172.17.0.1/private/ jessie-staging/main fonts-freefont-otf all 20120503-4 [3186 kB]
Get:188 http://172.17.0.1/private/ jessie-staging/main fonts-freefont-ttf all 20120503-4 [4262 kB]
Get:189 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-artemisia all 1.1-5 [259 kB]
Get:190 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-complutum all 1.1-6 [41.6 kB]
Get:191 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-didot all 1.1-6 [278 kB]
Get:192 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-neohellenic all 1.1-6 [215 kB]
Get:193 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-olga all 1.1-5 [33.2 kB]
Get:194 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-solomos all 1.1-5 [40.6 kB]
Get:195 http://172.17.0.1/private/ jessie-staging/main fonts-inconsolata all 001.010-5 [61.6 kB]
Get:196 http://172.17.0.1/private/ jessie-staging/main fonts-junicode all 0.7.8-2 [643 kB]
Get:197 http://172.17.0.1/private/ jessie-staging/main fonts-linuxlibertine all 5.3.0-2 [1713 kB]
Get:198 http://172.17.0.1/private/ jessie-staging/main fonts-lobster all 2.0-2 [39.5 kB]
Get:199 http://172.17.0.1/private/ jessie-staging/main fonts-lobstertwo all 2.0-2 [94.0 kB]
Get:200 http://172.17.0.1/private/ jessie-staging/main fonts-oflb-asana-math all 000.907-6 [245 kB]
Get:201 http://172.17.0.1/private/ jessie-staging/main fonts-sil-gentium all 20081126:1.02-13 [241 kB]
Get:202 http://172.17.0.1/private/ jessie-staging/main fonts-sil-gentium-basic all 1.1-7 [382 kB]
Get:203 http://172.17.0.1/private/ jessie-staging/main libgfortran-4.9-dev armhf 4.9.0-7 [181 kB]
Get:204 http://172.17.0.1/private/ jessie-staging/main gfortran-4.9 armhf 4.9.0-7 [4479 kB]
Get:205 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.9.0-4 [1268 B]
Get:206 http://172.17.0.1/private/ jessie-staging/main libgirepository-1.0-1 armhf 1.40.0-2 [80.0 kB]
Get:207 http://172.17.0.1/private/ jessie-staging/main gir1.2-glib-2.0 armhf 1.40.0-2 [138 kB]
Get:208 http://172.17.0.1/private/ jessie-staging/main gir1.2-freedesktop armhf 1.40.0-2 [20.2 kB]
Get:209 http://172.17.0.1/private/ jessie-staging/main gir1.2-pango-1.0 armhf 1.36.3-1 [191 kB]
Get:210 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-7 [186 kB]
Get:211 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-7 [201 kB]
Get:212 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-5 [33.8 kB]
Get:213 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-6 [117 kB]
Get:214 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1+rpi1 [192 kB]
Get:215 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.50-1 [260 kB]
Get:216 http://172.17.0.1/private/ jessie-staging/main libfreetype6-dev armhf 2.5.2-1 [575 kB]
Get:217 http://172.17.0.1/private/ jessie-staging/main pkg-config armhf 0.28-1 [55.1 kB]
Get:218 http://172.17.0.1/private/ jessie-staging/main libfontconfig1-dev armhf 2.11.0-5 [873 kB]
Get:219 http://172.17.0.1/private/ jessie-staging/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:220 http://172.17.0.1/private/ jessie-staging/main x11proto-core-dev all 7.0.26-1 [729 kB]
Get:221 http://172.17.0.1/private/ jessie-staging/main libxau-dev armhf 1:1.0.8-1 [23.0 kB]
Get:222 http://172.17.0.1/private/ jessie-staging/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB]
Get:223 http://172.17.0.1/private/ jessie-staging/main x11proto-input-dev all 2.3.1-1 [157 kB]
Get:224 http://172.17.0.1/private/ jessie-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:225 http://172.17.0.1/private/ jessie-staging/main xtrans-dev all 1.3.4-1 [99.3 kB]
Get:226 http://172.17.0.1/private/ jessie-staging/main libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:227 http://172.17.0.1/private/ jessie-staging/main libxcb1-dev armhf 1.10-3 [78.1 kB]
Get:228 http://172.17.0.1/private/ jessie-staging/main libx11-dev armhf 2:1.6.2-2 [728 kB]
Get:229 http://172.17.0.1/private/ jessie-staging/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB]
Get:230 http://172.17.0.1/private/ jessie-staging/main libxrender-dev armhf 1:0.9.8-1 [38.8 kB]
Get:231 http://172.17.0.1/private/ jessie-staging/main x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:232 http://172.17.0.1/private/ jessie-staging/main libxext-dev armhf 2:1.3.2-1 [110 kB]
Get:233 http://172.17.0.1/private/ jessie-staging/main libice-dev armhf 2:1.0.9-1 [58.1 kB]
Get:234 http://172.17.0.1/private/ jessie-staging/main libsm-dev armhf 2:1.2.2-1 [33.5 kB]
Get:235 http://172.17.0.1/private/ jessie-staging/main libpixman-1-dev armhf 0.32.6-1 [440 kB]
Get:236 http://172.17.0.1/private/ jessie-staging/main libxcb-render0-dev armhf 1.10-3 [21.7 kB]
Get:237 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0-dev armhf 1.10-3 [12.4 kB]
Get:238 http://172.17.0.1/private/ jessie-staging/main libdrm-dev armhf 2.4.54-1 [118 kB]
Get:239 http://172.17.0.1/private/ jessie-staging/main mesa-common-dev armhf 10.2.3-1 [298 kB]
Get:240 http://172.17.0.1/private/ jessie-staging/main libx11-xcb-dev armhf 2:1.6.2-2 [165 kB]
Get:241 http://172.17.0.1/private/ jessie-staging/main libxcb-dri3-dev armhf 1.10-3 [11.4 kB]
Get:242 http://172.17.0.1/private/ jessie-staging/main libxcb-randr0-dev armhf 1.10-3 [25.6 kB]
Get:243 http://172.17.0.1/private/ jessie-staging/main libxcb-shape0-dev armhf 1.10-3 [12.6 kB]
Get:244 http://172.17.0.1/private/ jessie-staging/main libxcb-xfixes0-dev armhf 1.10-3 [17.1 kB]
Get:245 http://172.17.0.1/private/ jessie-staging/main libxcb-sync-dev armhf 1.10-3 [15.8 kB]
Get:246 http://172.17.0.1/private/ jessie-staging/main libxcb-present-dev armhf 1.10-3 [12.4 kB]
Get:247 http://172.17.0.1/private/ jessie-staging/main libxshmfence-dev armhf 1.1-2 [6172 B]
Get:248 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0-dev armhf 1.10-3 [14.3 kB]
Get:249 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0-dev armhf 1.10-3 [35.2 kB]
Get:250 http://172.17.0.1/private/ jessie-staging/main x11proto-fixes-dev all 1:5.0-2 [19.2 kB]
Get:251 http://172.17.0.1/private/ jessie-staging/main libxfixes-dev armhf 1:5.0.1-1 [24.1 kB]
Get:252 http://172.17.0.1/private/ jessie-staging/main x11proto-damage-dev all 1:1.2.1-2 [11.8 kB]
Get:253 http://172.17.0.1/private/ jessie-staging/main libxdamage-dev armhf 1:1.1.4-1 [14.3 kB]
Get:254 http://172.17.0.1/private/ jessie-staging/main x11proto-xf86vidmode-dev all 2.3.1-2 [6114 B]
Get:255 http://172.17.0.1/private/ jessie-staging/main libxxf86vm-dev armhf 1:1.1.3-1 [25.5 kB]
Get:256 http://172.17.0.1/private/ jessie-staging/main x11proto-dri2-dev all 2.8-2 [18.2 kB]
Get:257 http://172.17.0.1/private/ jessie-staging/main x11proto-gl-dev all 1.4.17-1 [28.0 kB]
Get:258 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-dev armhf 10.2.3-1 [37.3 kB]
Get:259 http://172.17.0.1/private/ jessie-staging/main libglib2.0-data all 2.40.0-3 [2183 kB]
Get:260 http://172.17.0.1/private/ jessie-staging/main libglib2.0-bin armhf 2.40.0-3 [1359 kB]
Get:261 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-5 [357 kB]
Get:262 http://172.17.0.1/private/ jessie-staging/main libglib2.0-dev armhf 2.40.0-3 [2471 kB]
Get:263 http://172.17.0.1/private/ jessie-staging/main libcairo2-dev armhf 1.12.16-2+rpi1 [1028 kB]
Get:264 http://172.17.0.1/private/ jessie-staging/main libjbig2dec0 armhf 0.11+20120125-1 [46.4 kB]
Get:265 http://172.17.0.1/private/ jessie-staging/main libgs9-common all 9.05~dfsg-8.1 [1981 kB]
Get:266 http://172.17.0.1/private/ jessie-staging/main libgs9 armhf 9.05~dfsg-8.1 [1564 kB]
Get:267 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-dev armhf 0.9.29-1 [360 kB]
Get:268 http://172.17.0.1/private/ jessie-staging/main libintl-perl all 1.23-1 [1209 kB]
Get:269 http://172.17.0.1/private/ jessie-staging/main libjpeg8-dev armhf 8d1-1 [205 kB]
Get:270 http://172.17.0.1/private/ jessie-staging/main libkpathsea6 armhf 2014.20140528.34243-4 [143 kB]
Get:271 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.5.0-2 [2416 kB]
Get:272 http://172.17.0.1/private/ jessie-staging/main liblapack-dev armhf 3.5.0-2 [2716 kB]
Get:273 http://172.17.0.1/private/ jessie-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:274 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20140118-1 [64.8 kB]
Get:275 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20140118-1 [152 kB]
Get:276 http://172.17.0.1/private/ jessie-staging/main libxft-dev armhf 2.3.2-1 [59.1 kB]
Get:277 http://172.17.0.1/private/ jessie-staging/main libpango1.0-dev armhf 1.36.3-1 [422 kB]
Get:278 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu3 [17.0 kB]
Get:279 http://172.17.0.1/private/ jessie-staging/main libpotrace0 armhf 1.11-2 [22.6 kB]
Get:280 http://172.17.0.1/private/ jessie-staging/main libptexenc1 armhf 2014.20140528.34243-4 [51.3 kB]
Get:281 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.3-6 [194 kB]
Get:282 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.3-6 [994 B]
Get:283 http://172.17.0.1/private/ jessie-staging/main libsynctex1 armhf 2014.20140528.34243-4 [53.9 kB]
Get:284 http://172.17.0.1/private/ jessie-staging/main libtext-unidecode-perl all 0.04-2 [115 kB]
Get:285 http://172.17.0.1/private/ jessie-staging/main libtiff5-dev armhf 4.0.3-9 [314 kB]
Get:286 http://172.17.0.1/private/ jessie-staging/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB]
Get:287 http://172.17.0.1/private/ jessie-staging/main libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:288 http://172.17.0.1/private/ jessie-staging/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:289 http://172.17.0.1/private/ jessie-staging/main libxml-libxml-perl armhf 2.0116+dfsg-1 [339 kB]
Get:290 http://172.17.0.1/private/ jessie-staging/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:291 http://172.17.0.1/private/ jessie-staging/main libxss-dev armhf 1:1.2.2-1 [22.7 kB]
Get:292 http://172.17.0.1/private/ jessie-staging/main libxt-dev armhf 1:1.1.4-1 [447 kB]
Get:293 http://172.17.0.1/private/ jessie-staging/main mpack armhf 1.6-8 [38.4 kB]
Get:294 http://172.17.0.1/private/ jessie-staging/main tex-common all 5.02 [625 kB]
Get:295 http://172.17.0.1/private/ jessie-staging/main preview-latex-style all 11.87-1 [317 kB]
Get:296 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.15-4 [58.4 kB]
Get:297 http://172.17.0.1/private/ jessie-staging/main tcl8.5-dev armhf 8.5.15-4 [634 kB]
Get:298 http://172.17.0.1/private/ jessie-staging/main texinfo armhf 5.2.0.dfsg.1-4 [955 kB]
Get:299 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.1 [64.6 kB]
Get:300 http://172.17.0.1/private/ jessie-staging/main texlive-binaries armhf 2014.20140528.34243-4 [5261 kB]
Get:301 http://172.17.0.1/private/ jessie-staging/main texlive-base all 2014.20140626-1 [17.7 MB]
Get:302 http://172.17.0.1/private/ jessie-staging/main texlive-latex-base all 2014.20140626-1 [866 kB]
Get:303 http://172.17.0.1/private/ jessie-staging/main texlive-extra-utils all 2014.20140626-1 [10.5 MB]
Get:304 http://172.17.0.1/private/ jessie-staging/main fonts-stix all 1.1.1-1 [588 kB]
Get:305 http://172.17.0.1/private/ jessie-staging/main ttf-adf-accanthis all 0.20090423-2 [401 kB]
Get:306 http://172.17.0.1/private/ jessie-staging/main ttf-adf-gillius all 0.20090423-2 [400 kB]
Get:307 http://172.17.0.1/private/ jessie-staging/main texlive-fonts-extra all 2014.20140626-1 [182 MB]
Get:308 http://172.17.0.1/private/ jessie-staging/main texlive-fonts-recommended all 2014.20140626-1 [5747 kB]
Get:309 http://172.17.0.1/private/ jessie-staging/main texlive-generic-recommended all 2014.20140626-1 [2144 kB]
Get:310 http://172.17.0.1/private/ jessie-staging/main texlive-latex-recommended all 2014.20140626-1 [7522 kB]
Get:311 http://172.17.0.1/private/ jessie-staging/main texlive-pictures all 2014.20140626-1 [3008 kB]
Get:312 http://172.17.0.1/private/ jessie-staging/main texlive-latex-extra all 2014.20140626-1 [7363 kB]
Get:313 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.15-4 [106 kB]
Get:314 http://172.17.0.1/private/ jessie-staging/main tk8.5-dev armhf 8.5.15-4 [669 kB]
Get:315 http://172.17.0.1/private/ jessie-staging/main x11-xkb-utils armhf 7.7+1 [138 kB]
Get:316 http://172.17.0.1/private/ jessie-staging/main xauth armhf 1:1.0.9-1 [35.6 kB]
Get:317 http://172.17.0.1/private/ jessie-staging/main xfonts-encodings all 1:1.0.4-1 [584 kB]
Get:318 http://172.17.0.1/private/ jessie-staging/main xfonts-utils armhf 1:7.7+2 [68.8 kB]
Get:319 http://172.17.0.1/private/ jessie-staging/main xfonts-base all 1:1.0.3 [6181 kB]
Get:320 http://172.17.0.1/private/ jessie-staging/main xkb-data all 2.12-1 [597 kB]
Get:321 http://172.17.0.1/private/ jessie-staging/main xserver-common all 2:1.15.99.904-1 [1739 kB]
Get:322 http://172.17.0.1/private/ jessie-staging/main xvfb armhf 2:1.15.99.904-1 [2321 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 410 MB in 1min 39s (4099 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 11827 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.3.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.3.0-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
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Unpacking libssl1.0.0:armhf (1.0.1h-3) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.22.2-6) ...
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Preparing to unpack .../bsdmainutils_9.0.5_armhf.deb ...
Unpacking bsdmainutils (9.0.5) ...
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Preparing to unpack .../man-db_2.6.7.1-1_armhf.deb ...
Unpacking man-db (2.6.7.1-1) ...
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Unpacking bash-completion (1:2.1-4) ...
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Unpacking libasprintf0c2:armhf (0.18.3.2-3) ...
Selecting previously unselected package libgpg-error0:armhf.
Preparing to unpack .../libgpg-error0_1.13-0.1_armhf.deb ...
Unpacking libgpg-error0:armhf (1.13-0.1) ...
Selecting previously unselected package libgcrypt11:armhf.
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Unpacking libgcrypt11:armhf (1.5.3-4) ...
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Unpacking libnettle4:armhf (2.7.1-2) ...
Selecting previously unselected package libhogweed2:armhf.
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Unpacking libhogweed2:armhf (2.7.1-2) ...
Selecting previously unselected package libffi6:armhf.
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Unpacking libffi6:armhf (3.1-2) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.20.2-5_armhf.deb ...
Unpacking libp11-kit0:armhf (0.20.2-5) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.0-2_armhf.deb ...
Unpacking libtasn1-6:armhf (4.0-2) ...
Selecting previously unselected package libgnutls-deb0-28:armhf.
Preparing to unpack .../libgnutls-deb0-28_3.2.15-3_armhf.deb ...
Unpacking libgnutls-deb0-28:armhf (3.2.15-3) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-4_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-4) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.12.1+dfsg-4_armhf.deb ...
Unpacking libkrb5support0:armhf (1.12.1+dfsg-4) ...
Selecting previously unselected package libk5crypto3:armhf.
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Unpacking libk5crypto3:armhf (1.12.1+dfsg-4) ...
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Unpacking libkrb5-3:armhf (1.12.1+dfsg-4) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
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Selecting previously unselected package libidn11:armhf.
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Unpacking libidn11:armhf (1.28-2) ...
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Preparing to unpack .../libmagic1_1%3a5.19-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.19-1) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.5-2_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.5-2) ...
Selecting previously unselected package libwrap0:armhf.
Preparing to unpack .../libwrap0_7.6.q-25_armhf.deb ...
Unpacking libwrap0:armhf (7.6.q-25) ...
Selecting previously unselected package libxml2:armhf.
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Unpacking libxml2:armhf (2.9.1+dfsg1-4) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
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Unpacking libpython2.7-minimal:armhf (2.7.8-1) ...
Selecting previously unselected package python2.7-minimal.
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Unpacking python2.7-minimal (2.7.8-1) ...
Selecting previously unselected package fonts-droid.
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Unpacking fonts-droid (1:4.3-3) ...
Selecting previously unselected package fonts-lato.
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Unpacking fonts-lato (1.104-4) ...
Selecting previously unselected package libasound2-data.
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Unpacking libasound2-data (1.0.28-1) ...
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Unpacking libasound2:armhf (1.0.28-1) ...
Selecting previously unselected package libasyncns0:armhf.
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Unpacking libasyncns0:armhf (0.8-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.40.0-3_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.40.0-3) ...
Selecting previously unselected package libatk1.0-data.
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Unpacking libatk1.0-data (2.12.0-1) ...
Selecting previously unselected package libatk1.0-0:armhf.
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Unpacking libatk1.0-0:armhf (2.12.0-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-6_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-6) ...
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Creating config file /etc/papersize with new version
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Setting up x11proto-xext-dev (7.3.0-1) ...
Setting up libxext-dev:armhf (2:1.3.2-1) ...
Setting up libice-dev:armhf (2:1.0.9-1) ...
Setting up libsm-dev:armhf (2:1.2.2-1) ...
Setting up libpixman-1-dev (0.32.6-1) ...
Setting up libxcb-render0-dev:armhf (1.10-3) ...
Setting up libxcb-shm0-dev:armhf (1.10-3) ...
Setting up libdrm-dev:armhf (2.4.54-1) ...
Setting up mesa-common-dev (10.2.3-1) ...
Setting up libx11-xcb-dev:armhf (2:1.6.2-2) ...
Setting up libxcb-dri3-dev:armhf (1.10-3) ...
Setting up libxcb-randr0-dev:armhf (1.10-3) ...
Setting up libxcb-shape0-dev:armhf (1.10-3) ...
Setting up libxcb-xfixes0-dev:armhf (1.10-3) ...
Setting up libxcb-sync-dev:armhf (1.10-3) ...
Setting up libxcb-present-dev:armhf (1.10-3) ...
Setting up libxshmfence-dev:armhf (1.1-2) ...
Setting up libxcb-dri2-0-dev:armhf (1.10-3) ...
Setting up libxcb-glx0-dev:armhf (1.10-3) ...
Setting up x11proto-fixes-dev (1:5.0-2) ...
Setting up libxfixes-dev (1:5.0.1-1) ...
Setting up x11proto-damage-dev (1:1.2.1-2) ...
Setting up libxdamage-dev (1:1.1.4-1) ...
Setting up x11proto-xf86vidmode-dev (2.3.1-2) ...
Setting up libxxf86vm-dev:armhf (1:1.1.3-1) ...
Setting up x11proto-dri2-dev (2.8-2) ...
Setting up x11proto-gl-dev (1.4.17-1) ...
Setting up libgl1-mesa-dev (10.2.3-1) ...
Setting up libglib2.0-data (2.40.0-3) ...
Setting up libglib2.0-bin (2.40.0-3) ...
Setting up libpcre3-dev:armhf (1:8.31-5) ...
Setting up libglib2.0-dev (2.40.0-3) ...
Setting up libcairo2-dev (1.12.16-2+rpi1) ...
Setting up libjbig2dec0 (0.11+20120125-1) ...
Setting up libgs9-common (9.05~dfsg-8.1) ...
Setting up libharfbuzz-dev (0.9.29-1) ...
Setting up libintl-perl (1.23-1) ...
Setting up libjpeg8-dev:armhf (8d1-1) ...
Setting up libkpathsea6 (2014.20140528.34243-4) ...
Setting up liblapack3 (3.5.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9+20140118-1) ...
Setting up libncurses5-dev:armhf (5.9+20140118-1) ...
Setting up libxft-dev (2.3.2-1) ...
Setting up libpango1.0-dev (1.36.3-1) ...
Setting up libpaper-utils (1.1.24+nmu3) ...
Setting up libpotrace0 (1.11-2) ...
Setting up libptexenc1 (2014.20140528.34243-4) ...
Setting up libreadline6-dev:armhf (6.3-6) ...
Setting up libreadline-dev:armhf (6.3-6) ...
Setting up libsynctex1 (2014.20140528.34243-4) ...
Setting up libtext-unidecode-perl (0.04-2) ...
Setting up libtiff5-dev:armhf (4.0.3-9) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0116+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:armhf (1:1.2.2-1) ...
Setting up libxt-dev:armhf (1:1.1.4-1) ...
Setting up mpack (1.6-8) ...
Setting up tex-common (5.02) ...
Setting up preview-latex-style (11.87-1) ...
Setting up tcl8.5 (8.5.15-4) ...
Setting up tcl8.5-dev:armhf (8.5.15-4) ...
Setting up texinfo (5.2.0.dfsg.1-4) ...
Running mktexlsr. This may take some time. ... done.
Setting up xdg-utils (1.1.0~rc1+git20111210-7.1) ...
Setting up fonts-stix (1.1.1-1) ...
Setting up ttf-adf-accanthis (0.20090423-2) ...
Setting up ttf-adf-gillius (0.20090423-2) ...
Setting up tk8.5 (8.5.15-4) ...
Setting up tk8.5-dev:armhf (8.5.15-4) ...
Setting up x11-xkb-utils (7.7+1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up xfonts-encodings (1:1.0.4-1) ...
Setting up xfonts-utils (1:7.7+2) ...
Setting up xfonts-base (1:1.0.3) ...
Setting up xkb-data (2.12-1) ...
Setting up xserver-common (2:1.15.99.904-1) ...
Setting up xvfb (2:1.15.99.904-1) ...
Setting up libcupsimage2:armhf (1.7.4-1) ...
Setting up libcupsfilters1:armhf (1.0.54-3+b1) ...
Setting up libgs9 (9.05~dfsg-8.1) ...
Setting up texlive-binaries (2014.20140528.34243-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Building format(s) --refresh.
	This may take some time... done.
Setting up texlive-base (2014.20140626-1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Running mktexlsr. This may take some time... done.
Building format(s) --all.
	This may take some time... done.
Setting up openjdk-7-jre-headless:armhf (7u55-2.4.7-2) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (2:1.7-52) ...
Setting up openjdk-7-jre:armhf (7u55-2.4.7-2) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52) ...
Setting up openjdk-7-jdk:armhf (7u55-2.4.7-2) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
Setting up default-jdk (2:1.7-52) ...
Setting up ca-certificates-java (20140324) ...
done.
Setting up libatk-wrapper-java (0.30.4-4) ...
Setting up libatk-wrapper-java-jni:armhf (0.30.4-4) ...
Processing triggers for tex-common (5.02) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-fonts-extra (2014.20140626-1) ...
Setting up texlive-fonts-recommended (2014.20140626-1) ...
Setting up texlive-generic-recommended (2014.20140626-1) ...
Setting up texlive-latex-base (2014.20140626-1) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Processing triggers for tex-common (5.02) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-extra-utils (2014.20140626-1) ...
Setting up texlive-latex-recommended (2014.20140626-1) ...
Processing triggers for tex-common (5.02) ...
Running mktexlsr. This may take some time... done.
Setting up texlive-pictures (2014.20140626-1) ...
Processing triggers for tex-common (5.02) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2014.20140626-1) ...
Processing triggers for tex-common (5.02) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-7) ...
Processing triggers for ca-certificates (20140325) ...
Updating certificates in /etc/ssl/certs... 168 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.15-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24.51.20140617-1 dpkg-dev_1.17.10 g++-4.9_4.9.0-7 gcc-4.8_4.8.3-4 gcc-4.9_4.9.0-7 libc6-dev_2.19-7 libstdc++-4.9-dev_4.9.0-7 libstdc++6_4.9.0-7 linux-libc-dev_3.14.4-1+rpi1
Package versions: apt_1.0.6 base-files_7.3+rpi1 base-passwd_3.5.28 bash_4.3-7 bash-completion_1:2.1-4 binutils_2.24.51.20140617-1 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20140325 ca-certificates-java_20140324 coreutils_8.21-1.2 cpio_2.11+dfsg-2 cpp_4:4.9.0-4 cpp-4.8_4.8.3-4 cpp-4.9_4.9.0-7 dash_0.5.7-4 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-1.2 debhelper_9.20140613 debianutils_4.4 default-jdk_2:1.7-52 default-jre_2:1.7-52 default-jre-headless_2:1.7-52 diffutils_1:3.3-1 dpkg_1.17.10 dpkg-dev_1.17.10 e2fslibs_1.42.10-1.1 e2fsprogs_1.42.10-1.1 fakeroot_1.18.4-2 file_1:5.19-1 findutils_4.4.2-9 fontconfig_2.11.0-5 fontconfig-config_2.11.0-5 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-dejavu-core_2.34-1 fonts-dejavu-extra_2.34-1 fonts-droid_1:4.3-3 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.1.0~dfsg-1 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_1.104-4 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-sil-gentium_20081126:1.02-13 fonts-sil-gentium-basic_1.1-7 fonts-stix_1.1.1-1 g++_4:4.9.0-4 g++-4.9_4.9.0-7 gcc_4:4.9.0-4 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8_4.8.3-4 gcc-4.8-base_4.8.3-4 gcc-4.9_4.9.0-7 gcc-4.9-base_4.9.0-7 gettext_0.18.3.2-3 gettext-base_0.18.3.2-3 gfortran_4:4.9.0-4 gfortran-4.9_4.9.0-7 gir1.2-freedesktop_1.40.0-2 gir1.2-glib-2.0_1.40.0-2 gir1.2-pango-1.0_1.36.3-1 gnupg_1.4.18-2 gpgv_1.4.18-2 grep_2.18-2 groff-base_1.22.2-6 gzip_1.6-3 hostname_3.15 init-system-helpers_1.19 initramfs-tools_0.115 initscripts_2.88dsf-53.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.52 klibc-utils_2.0.3-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_1.0.6 libasan0_4.8.3-4 libasan1_4.9.0-7 libasound2_1.0.28-1 libasound2-data_1.0.28-1 libasprintf0c2_0.18.3.2-3 libasyncns0_0.8-5 libatk-wrapper-java_0.30.4-4 libatk-wrapper-java-jni_0.30.4-4 libatk1.0-0_2.12.0-1 libatk1.0-data_2.12.0-1 libatomic1_4.9.0-7 libattr1_1:2.4.47-1 libaudit-common_1:2.3.7-1 libaudit1_1:2.3.7-1 libavahi-client3_0.6.31-4 libavahi-common-data_0.6.31-4 libavahi-common3_0.6.31-4 libbison-dev_2:3.0.2.dfsg-2 libblas-dev_1.2.20110419-7 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.8 libbz2-1.0_1.0.6-5 libbz2-dev_1.0.6-5 libc-bin_2.19-7 libc-dev-bin_2.19-7 libc6_2.19-7 libc6-dev_2.19-7 libcairo-gobject2_1.12.16-2+rpi1 libcairo-script-interpreter2_1.12.16-2+rpi1 libcairo2_1.12.16-2+rpi1 libcairo2-dev_1.12.16-2+rpi1 libcap2_1:2.22-1.2 libcloog-isl4_0.18.2-1 libcomerr2_1.42.10-1.1 libcroco3_0.6.8-2 libcups2_1.7.4-1 libcupsfilters1_1.0.54-3+b1 libcupsimage2_1.7.4-1 libdatrie1_0.2.8-1 libdb5.1_5.1.29-6 libdb5.3_5.3.28-5 libdbus-1-3_1.8.6-1 libdpkg-perl_1.17.10 libdrm-dev_2.4.54-1 libdrm-nouveau2_2.4.54-1 libdrm-omap1_2.4.54-1 libdrm-radeon1_2.4.54-1 libdrm2_2.4.54-1 libelfg0_0.8.13-5 libexpat1_2.1.0-6 libexpat1-dev_2.1.0-6 libffi6_3.1-2 libflac8_1.3.0-2 libfontconfig1_2.11.0-5 libfontconfig1-dev_2.11.0-5 libfontenc1_1:1.1.2-1 libfreetype6_2.5.2-1 libfreetype6-dev_2.5.2-1 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.3-4 libgcc-4.9-dev_4.9.0-7 libgcc1_1:4.9.0-7 libgcrypt11_1.5.3-4 libgdbm3_1.8.3-12 libgdk-pixbuf2.0-0_2.30.7-1 libgdk-pixbuf2.0-common_2.30.7-1 libgfortran-4.9-dev_4.9.0-7 libgfortran3_4.9.0-7 libgif4_4.1.6-11 libgirepository-1.0-1_1.40.0-2 libgl1-mesa-dev_10.2.3-1 libgl1-mesa-glx_10.2.3-1 libglapi-mesa_10.2.3-1 libglib2.0-0_2.40.0-3 libglib2.0-bin_2.40.0-3 libglib2.0-data_2.40.0-3 libglib2.0-dev_2.40.0-3 libgmp10_2:6.0.0+dfsg-4+rpi1 libgnutls-deb0-28_3.2.15-3 libgomp1_4.9.0-7 libgpg-error0_1.13-0.1 libgraphite2-3_1.2.4-3 libgs9_9.05~dfsg-8.1 libgs9-common_9.05~dfsg-8.1 libgssapi-krb5-2_1.12.1+dfsg-4 libgtk2.0-0_2.24.24-1 libgtk2.0-common_2.24.24-1 libharfbuzz-dev_0.9.29-1 libharfbuzz-gobject0_0.9.29-1 libharfbuzz-icu0_0.9.29-1 libharfbuzz0b_0.9.29-1 libhogweed2_2.7.1-2 libice-dev_2:1.0.9-1 libice6_2:1.0.9-1 libicu52_52.1-4 libidn11_1.28-2 libijs-0.35_0.35-10 libintl-perl_1.23-1 libisl10_0.12.2-2 libjasper1_1.900.1-debian1-2 libjbig-dev_2.0-2.1 libjbig0_2.0-2.1 libjbig2dec0_0.11+20120125-1 libjpeg8_8d1-1 libjpeg8-dev_8d1-1 libjson-c2_0.11-4 libk5crypto3_1.12.1+dfsg-4 libkeyutils1_1.5.9-4 libklibc_2.0.3-1+rpi1 libkmod2_16-2 libkpathsea6_2014.20140528.34243-4 libkrb5-3_1.12.1+dfsg-4 libkrb5support0_1.12.1+dfsg-4 liblapack-dev_3.5.0-2 liblapack3_3.5.0-2 liblcms2-2_2.6-3 liblocale-gettext-perl_1.05-8 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.06-1.2 libmagic1_1:5.19-1 libmount1_2.20.1-5.8 libmpc3_1.0.2-1 libmpfr4_3.1.2-1 libncurses5_5.9+20140118-1 libncurses5-dev_5.9+20140118-1 libncursesw5_5.9+20140118-1 libnettle4_2.7.1-2 libnspr4_2:4.10.6-1 libnss3_2:3.16.3-1 libogg0_1.3.2-1 libopenjpeg5_1.5.2-2 libp11-kit0_0.20.2-5 libpam-modules_1.1.8-3 libpam-modules-bin_1.1.8-3 libpam-runtime_1.1.8-3 libpam0g_1.1.8-3 libpango-1.0-0_1.36.3-1 libpango1.0-dev_1.36.3-1 libpangocairo-1.0-0_1.36.3-1 libpangoft2-1.0-0_1.36.3-1 libpangoxft-1.0-0_1.36.3-1 libpaper-utils_1.1.24+nmu3 libpaper1_1.1.24+nmu3 libpcre3_1:8.31-5 libpcre3-dev_1:8.31-5 libpcrecpp0_1:8.31-5 libpcsclite1_1.8.11-3 libpipeline1_1.3.0-1 libpixman-1-0_0.32.6-1 libpixman-1-dev_0.32.6-1 libpng12-0_1.2.50-1 libpng12-dev_1.2.50-1 libpoppler46_0.26.2-2 libpotrace0_1.11-2 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-5 libptexenc1_2014.20140528.34243-4 libpthread-stubs0-dev_0.3-4 libpulse0_5.0-2+b2 libpython-stdlib_2.7.8-1 libpython2.7-minimal_2.7.8-1 libpython2.7-stdlib_2.7.8-1 libreadline-dev_6.3-6 libreadline6_6.3-6 libreadline6-dev_6.3-6 libselinux1_2.3-1 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-1 libsigsegv2_2.10-4 libslang2_2.2.4-17 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsndfile1_1.0.25-9 libsqlite3-0_3.8.5-2 libss2_1.42.10-1.1 libssl1.0.0_1.0.1h-3 libstdc++-4.9-dev_4.9.0-7 libstdc++6_4.9.0-7 libsynctex1_2014.20140528.34243-4 libsystemd-id128-0_204-14 libsystemd-journal0_204-14 libtasn1-6_4.0-2 libtcl8.5_8.5.15-4 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-unidecode-perl_0.04-2 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.20-3 libthai0_0.1.20-3 libtiff5_4.0.3-9 libtiff5-dev_4.0.3-9 libtiffxx5_4.0.3-9 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140118-1 libtinfo5_5.9+20140118-1 libtk8.5_8.5.15-4 libubsan0_4.9.0-7 libudev1_204-14 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-24 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.8 libvorbis0a_1.3.2-1.4 libvorbisenc2_1.3.2-1.4 libwrap0_7.6.q-25 libx11-6_2:1.6.2-2 libx11-data_2:1.6.2-2 libx11-dev_2:1.6.2-2 libx11-xcb-dev_2:1.6.2-2 libx11-xcb1_2:1.6.2-2 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.12-2 libxcb-dri2-0_1.10-3 libxcb-dri2-0-dev_1.10-3 libxcb-dri3-0_1.10-3 libxcb-dri3-dev_1.10-3 libxcb-glx0_1.10-3 libxcb-glx0-dev_1.10-3 libxcb-present-dev_1.10-3 libxcb-present0_1.10-3 libxcb-randr0_1.10-3 libxcb-randr0-dev_1.10-3 libxcb-render0_1.10-3 libxcb-render0-dev_1.10-3 libxcb-shape0_1.10-3 libxcb-shape0-dev_1.10-3 libxcb-shm0_1.10-3 libxcb-shm0-dev_1.10-3 libxcb-sync-dev_1.10-3 libxcb-sync1_1.10-3 libxcb-xfixes0_1.10-3 libxcb-xfixes0-dev_1.10-3 libxcb1_1.10-3 libxcb1-dev_1.10-3 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage-dev_1:1.1.4-1 libxdamage1_1:1.1.4-1 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.2-1 libxext6_2:1.3.2-1 libxfixes-dev_1:5.0.1-1 libxfixes3_1:5.0.1-1 libxfont1_1:1.4.99.901-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.2-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.8-1 libxml-libxml-perl_2.0116+dfsg-1 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml2_2.9.1+dfsg1-4 libxmu6_2:1.1.2-1 libxmuu1_2:1.1.2-1 libxpm4_1:3.5.11-1 libxrandr2_2:1.4.2-1 libxrender-dev_1:0.9.8-1 libxrender1_1:0.9.8-1 libxshmfence-dev_1.1-2 libxshmfence1_1.1-2 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.4-1 libxt6_1:1.1.4-1 libxtst6_2:1.2.2-1 libxxf86vm-dev_1:1.1.3-1 libxxf86vm1_1:1.1.3-1 libzzip-0-13_0.13.62-2 linux-libc-dev_3.14.4-1+rpi1 login_1:4.2-2 lsb-base_4.1+Debian13+rpi1 m4_1.4.17-4 make_4.0-8 makedev_2.3.1-93 man-db_2.6.7.1-1 mawk_1.3.3-17 mesa-common-dev_10.2.3-1 mime-support_3.56 mount_2.20.1-5.8 mpack_1.6-8 multiarch-support_2.19-7 nano_2.2.6-1.1 ncurses-base_5.9+20140118-1 ncurses-bin_5.9+20140118-1 openjdk-7-jdk_7u55-2.4.7-2 openjdk-7-jre_7u55-2.4.7-2 openjdk-7-jre-headless_7u55-2.4.7-2 openssl_1.0.1h-3 passwd_1:4.2-2 patch_2.7.1-5 perl_5.18.2-6 perl-base_5.18.2-6 perl-modules_5.18.2-6 pkg-config_0.28-1 plymouth_0.9.0-4 po-debconf_1.0.16+nmu3 poppler-data_0.4.6-5 preview-latex-style_11.87-1 procps_1:3.3.9-5 python_2.7.8-1 python-minimal_2.7.8-1 python2.7_2.7.8-1 python2.7-minimal_2.7.8-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-6 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 shared-mime-info_1.3-1 startpar_0.59-3 sysv-rc_2.88dsf-53.2 sysvinit_2.88dsf-53.2 sysvinit-core_2.88dsf-53.2 sysvinit-utils_2.88dsf-53.2 tar_1.27.1-2 tcl8.5_8.5.15-4 tcl8.5-dev_8.5.15-4 tex-common_5.02 texinfo_5.2.0.dfsg.1-4 texlive-base_2014.20140626-1 texlive-binaries_2014.20140528.34243-4 texlive-extra-utils_2014.20140626-1 texlive-fonts-extra_2014.20140626-1 texlive-fonts-recommended_2014.20140626-1 texlive-generic-recommended_2014.20140626-1 texlive-latex-base_2014.20140626-1 texlive-latex-extra_2014.20140626-1 texlive-latex-recommended_2014.20140626-1 texlive-pictures_2014.20140626-1 tk8.5_8.5.15-4 tk8.5-dev_8.5.15-4 ttf-adf-accanthis_0.20090423-2 ttf-adf-gillius_0.20090423-2 tzdata_2014e-1 tzdata-java_2014e-1 ucf_3.0030 udev_204-14 util-linux_2.20.1-5.8 x11-common_1:7.7+7 x11-xkb-utils_7.7+1 x11proto-core-dev_7.0.26-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xauth_1:1.0.9-1 xdg-utils_1.1.0~rc1+git20111210-7.1 xfonts-base_1:1.0.3 xfonts-encodings_1:1.0.4-1 xfonts-utils_1:7.7+2 xkb-data_2.12-1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.15.99.904-1 xtrans-dev_1.3.4-1 xvfb_2:1.15.99.904-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1+rpi1 zlib1g-dev_1:1.2.8.dfsg-1+rpi1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Jul 10 10:17:48 2014 UTC using DSA key ID 91B0D3B7
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_3.1.1-1.dsc
dpkg-source: info: extracting r-base in r-base-3.1.1
dpkg-source: info: unpacking r-base_3.1.1.orig.tar.gz
dpkg-source: info: applying r-base_3.1.1-1.diff.gz

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-665da153-54fd-480c-8e33-43d43d7d7362
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
init=/sbin/init
previous=N
rootmnt=/root
runlevel=2

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 3.1.1-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build r-base-3.1.1
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4"				\
FCFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build arm-linux-gnueabihf
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... false
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking size of long double... 8
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.5/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.10... yes
checking whether PCRE support needs to be compiled... no
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/extra/xz/Makefile
config.status: creating src/extra/zlib/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/modules/vfonts/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 77 compiler:       gfortran  -g -O2 -fstack-protector --param=ssp-buffer-size=4

  C++ compiler:              g++  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  C++ 11 compiler:           g++  -std=c++11 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 90/95 compiler:    gfortran -g -O2 -fstack-protector --param=ssp-buffer-size=4
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4"			\
		FCFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		R
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dtrsl.f -o dtrsl.o
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1593:5: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
     ^
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -lblas -lgfortran -lm   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/bin/exec
mkdir -p -- /«PKGBUILDDIR»/lib
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -Wl,-z,relro -o R.bin Rmain.o  -L../../lib -lR 
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR  
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/modules
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -Wl,-z,relro -o lapack.so  Lapack.o  -L../../../lib -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gcc -std=gnu99 -shared -Wl,-z,relro -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm 
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm 
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -L../../../lib -lR -lm 
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo  -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.5 -L/usr/lib/arm-linux-gnueabihf -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
Copying source files
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
bessel_j.c: In function 'bessel_j':
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
bessel_y.c: In function 'bessel_y':
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
bessel_j.c: In function 'bessel_j':
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
bessel_y.c: In function 'bessel_y':
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
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/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
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gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
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/«PKGBUILDDIR»/lib/libR.so is unchanged
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/«PKGBUILDDIR»/modules/R_X11.so is unchanged
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building system startup profile
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building package 'translations'
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building package 'base'
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all.R is unchanged
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building package 'tools'
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building package 'compiler'
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all.R is unchanged
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building package 'utils'
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all.R is unchanged
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building package 'grDevices'
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all.R is unchanged
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building package 'graphics'
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all.R is unchanged
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building package 'stats'
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all.R is unchanged
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building package 'datasets'
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building package 'methods'
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all.R is unchanged
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building package 'grid'
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all.R is unchanged
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../../../../library/grid/libs/grid.so is unchanged
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building package 'splines'
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all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
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building package 'stats4'
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all.R is unchanged
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building package 'tcltk'
all.R is unchanged
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../../../../library/tcltk/libs/tcltk.so is unchanged
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building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[4]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
installing parsed Rd
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
writing package indices
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[1]: Leaving directory '/«PKGBUILDDIR»'
/usr/bin/make javaconf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[5]: 'vfonts.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[2]: Entering directory '/«PKGBUILDDIR»'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.7.0_55
Java home path   : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI progam 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include
detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.oxGZce'
gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG -I/usr/lib/jvm/java-7-openjdk-armhf/jre/../include     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-7-openjdk-armhf/jre/lib/arm/server -ljvm -L/«PKGBUILDDIR»/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.oxGZce'


JAVA_HOME        : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java library path: $(JAVA_HOME)/lib/arm/server
JNI cpp flags    : -I$(JAVA_HOME)/../include
JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
Updating Java configuration in /«PKGBUILDDIR»
Done.

make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
touch make-arch-stamp
*** check ***
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/«PKGBUILDDIR»/debian/r-base-core
/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
installing doc ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
installing doc/html ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
installing doc/manual ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
installing share ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/intl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/vfonts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/unix; 						\
	rm -vf Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/«PKGBUILDDIR»/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/«PKGBUILDDIR»/src/unix'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
chmod a+x	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING  		
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING  	
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr			\
		rdocdir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX .........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX .............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2014/05/01>
Babel <3.9k> and hyphenation patterns for 2 languages loaded.
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Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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(../../share/texmf/tex/latex/Rd.sty
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`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
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Package hyperref Warning: Option `hyperindex' has already been used,
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) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
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Writing index file fullrefman.idx
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Chapter 1.
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g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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it is equal to
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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served strictly? Note that set-ting
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1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
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[12] [13] [14] [15] [16] [17] [18]
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1801--1801
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 1986--1988
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3439--3441
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 2970) in paragraph at lines 4015--4021
[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[64] [65] [66] [67] [68] [69] [70] [71] [72]
Underfull \hbox (badness 2521) in paragraph at lines 4572--4574
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87]
[88] [89] [90] [91]
Underfull \hbox (badness 2096) in paragraph at lines 5776--5789
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[92] [93] [94] [95]
Underfull \hbox (badness 10000) in paragraph at lines 6098--6101
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[96] [97] [98]
Underfull \hbox (badness 1442) in paragraph at lines 6261--6267
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 1609) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-om-m
ended) when writ-ing it should

Underfull \hbox (badness 4954) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeChar("\ufe
ff", con, eos = NULL) \T1/ptm/m/n/10 or
[99]
Underfull \hbox (badness 3568) in paragraph at lines 6322--6329
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[100]
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Underfull \vbox (badness 10000) has occurred while \output is active [102]
[103] [104] [105] [106] [107] [108] [109]
Underfull \hbox (badness 4595) in paragraph at lines 6927--6930
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for

Underfull \hbox (badness 2351) in paragraph at lines 6985--6988
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[110] [111] [112] [113] [114]
Underfull \hbox (badness 10000) in paragraph at lines 7230--7241
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[115]
Underfull \hbox (badness 4479) in paragraph at lines 7302--7311
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7302--7311
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1394) in paragraph at lines 8865--8870
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1052) in paragraph at lines 9202--9207
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9202--9207
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[145] [146]
Underfull \hbox (badness 10000) in paragraph at lines 9340--9344
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[147] [148] [149] [150] [151] [152]
Underfull \hbox (badness 2150) in paragraph at lines 9731--9734
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9745--9753
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[153]
Underfull \hbox (badness 2409) in paragraph at lines 9786--9793
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165]
[166] [167] [168]
Underfull \hbox (badness 4569) in paragraph at lines 10825--10829
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10825--10829
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[169] [170] [171] [172] [173] [174] [175] [176]
Underfull \hbox (badness 2698) in paragraph at lines 11369--11378
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11369--11378
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[183] [184] [185] [186] [187] [188] [189] [190]
Underfull \hbox (badness 2253) in paragraph at lines 12321--12323
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
Underfull \hbox (badness 1565) in paragraph at lines 12382--12386
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
Underfull \hbox (badness 10000) in paragraph at lines 12425--12427
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
Underfull \hbox (badness 1466) in paragraph at lines 12563--12566
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
Underfull \hbox (badness 10000) in paragraph at lines 12671--12675
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12682--12685
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[197] [198] [199] [200]
Underfull \hbox (badness 3965) in paragraph at lines 12929--12933
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212]
Underfull \hbox (badness 4429) in paragraph at lines 13658--13661
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
Underfull \hbox (badness 10000) in paragraph at lines 13744--13746
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13750--13754
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
Underfull \hbox (badness 2790) in paragraph at lines 13789--13792
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[215] [216] [217] [218] [219] [220] [221] [222] [223]
Underfull \hbox (badness 2452) in paragraph at lines 14360--14364
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14360--14364
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[224] [225]
Underfull \hbox (badness 1092) in paragraph at lines 14511--14516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[226] [227] [228] [229]
Underfull \hbox (badness 6741) in paragraph at lines 14759--14763
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[230] [231] [232] [233] [234]
Underfull \hbox (badness 1867) in paragraph at lines 15065--15072
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[235] [236] [237] [238]
Underfull \vbox (badness 10000) has occurred while \output is active [239]
[240]
Underfull \hbox (badness 3679) in paragraph at lines 15431--15433
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[241] [242] [243] [244] [245] [246]
Underfull \hbox (badness 1478) in paragraph at lines 15900--15903
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1442) in paragraph at lines 16596--16598
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
Underfull \hbox (badness 2452) in paragraph at lines 16688--16704
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[271] [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282]
[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
[475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486]
[487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498]
[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522]
[523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534]
[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
Underfull \hbox (badness 1917) in paragraph at lines 38156--38163
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
Underfull \hbox (badness 3668) in paragraph at lines 38726--38728
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
Underfull \hbox (badness 2401) in paragraph at lines 38829--38833
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
Underfull \hbox (badness 2111) in paragraph at lines 38992--38997
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 39008--39013
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
Underfull \hbox (badness 5417) in paragraph at lines 39526--39530
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
Underfull \hbox (badness 10000) in paragraph at lines 39587--39591
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
[659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669]
Underfull \vbox (badness 1237) has occurred while \output is active [670]
[671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682]
[683] [684] [685] [686] [687] [688] [689]
Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
Underfull \vbox (badness 10000) has occurred while \output is active [691]
[692] [693] [694]
Underfull \vbox (badness 10000) has occurred while \output is active [695]
Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
Underfull \hbox (badness 10000) in paragraph at lines 1576--1580
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
Underfull \hbox (badness 10000) in paragraph at lines 1964--1966
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
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\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[794]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
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Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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</«PKGBUILDDIR»/library/graphics/help/figures/mai.pdf, id=14
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[953]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1145] [1146] [1147] [1148] [1149]
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1150] [1151] [1152] [1153]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161]
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                   \relax 
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                                                 [1168]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193]
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
[1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259]
[1260] [1261]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1284] [1285] [1286] [1287] [1288]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299]
[1300] [1301]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

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[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
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[1352] [1353] [1354]
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[1356] [1357] [1358] [1359] [1360] [1361] [1362]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
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[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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<to be read again> 
                   \relax 
l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
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[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
Underfull \hbox (badness 4518) in paragraph at lines 13020--13025
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 4518) in paragraph at lines 13667--13672
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1418) in paragraph at lines 15375--15381
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518]
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[1520] [1521]
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[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
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[1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535]
[1536]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[1541] [1542] [1543] [1544] [1545] [1546] [1547]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558]
[1559] [1560]
Underfull \hbox (badness 5563) in paragraph at lines 19280--19282
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1561] [1562] [1563] [1564] [1565] [1566]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
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[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656]
[1657] [1658] [1659] [1660]
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[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
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Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1725] [1726] [1727]
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[1729] [1730]
Underfull \hbox (badness 1337) in paragraph at lines 29484--29488
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
Underfull \hbox (badness 5161) in paragraph at lines 30061--30063
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 30425--30430
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
[1759] [1760] [1761] [1762] [1763] [1764] [1765]
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Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1768] [1769] [1770] [1771]
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Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
[1781]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
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[1782]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1783] [1784]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1785] [1786]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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Underfull \hbox (badness 1635) in paragraph at lines 1047--1049
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1798]
Underfull \hbox (badness 4441) in paragraph at lines 1116--1124
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1799]
Underfull \hbox (badness 1014) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 10000) in paragraph at lines 1165--1168
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1165--1168
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1800] [1801]
Underfull \hbox (badness 10000) in paragraph at lines 1293--1295
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1805] [1806] [1807] [1808] [1809] [1810]
Underfull \hbox (badness 5726) in paragraph at lines 1789--1794
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1789--1794
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1811] [1812] [1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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Underfull \hbox (badness 1838) in paragraph at lines 3694--3700
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1842]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3774--3779
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1843] [1844]
Underfull \hbox (badness 1688) in paragraph at lines 3916--3928
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1850] [1851]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 10000) in paragraph at lines 536--542
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 536--542
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 647--653
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1859]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1870] [1871] [1872] [1873] [1874] [1875]
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 1841--1843
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1878]
Underfull \hbox (badness 5189) in paragraph at lines 1931--1933
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1879] [1880] [1881] [1882]
Underfull \hbox (badness 1661) in paragraph at lines 2146--2153
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893]
[1894] [1895] [1896] [1897]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3144--3150
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1898]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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                                                   [1911] [1912] [1913]
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
[1925]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1926] [1927]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28]) [29] [30] (./base-pkg.tex
Chapter 1.

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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
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\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[47] [48] [49] [50] [51] [52] [53] [54]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[64] [65] [66] [67] [68] [69] [70] [71] [72]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[88] [89] [90] [91]
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[92] [93] [94] [95]
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[96] [97] [98]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

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\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

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\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-om-m
ended) when writ-ing it should

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\T1/ptm/m/n/10 be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeChar("\ufe
ff", con, eos = NULL) \T1/ptm/m/n/10 or
[99]
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\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[100]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for

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[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[115]
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[139] [140] [141] [142] [143] [144]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

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\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[147] [148] [149] [150] [151] [152]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[153]
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[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

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\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

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\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
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[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
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[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

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[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
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[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

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\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
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[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
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[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
[475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486]
[487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498]
[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522]
[523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534]
[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
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[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
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\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
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[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
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[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
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Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
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[692] [693] [694]
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Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[754] [755] [756] [757] [758]
Underfull \hbox (badness 2856) in paragraph at lines 3400--3403
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3414--3416
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[759] [760]
Underfull \hbox (badness 1173) in paragraph at lines 3530--3540
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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[769]
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[771]
Underfull \hbox (badness 1067) in paragraph at lines 4230--4237
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[772] [773]
Underfull \hbox (badness 5231) in paragraph at lines 4391--4393
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[774]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[775]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[776]
Underfull \hbox (badness 2671) in paragraph at lines 4545--4553
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[777] [778]
Underfull \hbox (badness 1057) in paragraph at lines 4723--4728
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[779]
Underfull \hbox (badness 7344) in paragraph at lines 4783--4785
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[780] [781]
Underfull \hbox (badness 2035) in paragraph at lines 4907--4916
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
Underfull \hbox (badness 6775) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
Underfull \hbox (badness 1546) in paragraph at lines 5114--5122
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[786]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 10000) in paragraph at lines 5613--5616
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[794]
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[796] [797] [798] [799]
Underfull \hbox (badness 1189) in paragraph at lines 6009--6011
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 6107--6109
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[802] [803] [804] [805]
Underfull \hbox (badness 3780) in paragraph at lines 6398--6404
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[806] [807] [808]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[877] [878] [879] [880] [881] [882] [883] [884]
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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Underfull \hbox (badness 10000) in paragraph at lines 4727--4733
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[890] [891]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907]
[908] [909] [910] [911] [912] [913] [914] [915] [916] [917]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[953]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986]
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[999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009]
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[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1032] [1033] [1034] [1035]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064]
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097]
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
Underfull \hbox (badness 10000) in paragraph at lines 2628--2631
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1106] [1107]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1108]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1109] [1110] [1111] [1112] [1113] [1114] [1115]
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1116] [1117] [1118] [1119] [1120]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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[1144]
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1150] [1151] [1152] [1153]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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                   \relax 
l.6703 \aliasA{S4}{S3Part}{S4}
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                                                 [1168]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
Underfull \hbox (badness 1286) in paragraph at lines 7231--7233
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
Underfull \hbox (badness 3386) in paragraph at lines 1236--1239
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
[1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259]
[1260] [1261]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1284] [1285] [1286] [1287] [1288]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1300] [1301]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

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[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
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Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
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[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
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l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 4441) in paragraph at lines 11997--11999
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12004--12006
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1559] [1560]
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[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
Underfull \hbox (badness 10000) in paragraph at lines 19676--19678
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
Underfull \hbox (badness 10000) in paragraph at lines 23335--23338
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
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[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
Underfull \hbox (badness 3514) in paragraph at lines 25599--25605
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
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[1729] [1730]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 30425--30430
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
[1759] [1760] [1761] [1762] [1763] [1764] [1765]
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
[1781]

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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1798]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1799]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1800] [1801]
Underfull \hbox (badness 10000) in paragraph at lines 1293--1295
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1805] [1806] [1807] [1808] [1809] [1810]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1789--1794
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1811] [1812] [1813] [1814] [1815] [1816]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1817] [1818] [1819] [1820]

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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835]
[1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 1838) in paragraph at lines 3694--3700
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1842]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

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\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

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\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

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[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2006]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
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whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2008]
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[2009] [2010] [2011] [2012] [2013]
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

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[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-

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\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )

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\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g.
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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 
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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
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Chapter 1.

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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
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[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
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move a

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]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165]
[166] [167] [168]
Underfull \hbox (badness 4569) in paragraph at lines 10825--10829
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10825--10829
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[169] [170] [171] [172] [173] [174] [175] [176]
Underfull \hbox (badness 2698) in paragraph at lines 11369--11378
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11369--11378
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[177] [178] [179] [180] [181]
Underfull \vbox (badness 3803) has occurred while \output is active [182]
[183] [184] [185] [186] [187] [188] [189] [190]
Underfull \hbox (badness 2253) in paragraph at lines 12321--12323
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
Underfull \hbox (badness 1565) in paragraph at lines 12382--12386
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
Underfull \hbox (badness 10000) in paragraph at lines 12425--12427
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
Underfull \hbox (badness 1466) in paragraph at lines 12563--12566
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
Underfull \hbox (badness 10000) in paragraph at lines 12671--12675
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12682--12685
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[197] [198] [199] [200]
Underfull \hbox (badness 3965) in paragraph at lines 12929--12933
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212]
Underfull \hbox (badness 4429) in paragraph at lines 13658--13661
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
Underfull \hbox (badness 10000) in paragraph at lines 13744--13746
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13750--13754
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
Underfull \hbox (badness 2790) in paragraph at lines 13789--13792
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[215] [216] [217] [218] [219] [220] [221] [222] [223]
Underfull \hbox (badness 2452) in paragraph at lines 14360--14364
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14360--14364
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[224] [225]
Underfull \hbox (badness 1092) in paragraph at lines 14511--14516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[226] [227] [228] [229]
Underfull \hbox (badness 6741) in paragraph at lines 14759--14763
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[230] [231] [232] [233] [234]
Underfull \hbox (badness 1867) in paragraph at lines 15065--15072
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[235] [236] [237] [238]
Underfull \vbox (badness 10000) has occurred while \output is active [239]
[240]
Underfull \hbox (badness 3679) in paragraph at lines 15431--15433
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[241] [242] [243] [244] [245] [246]
Underfull \hbox (badness 1478) in paragraph at lines 15900--15903
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1442) in paragraph at lines 16596--16598
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
Underfull \hbox (badness 2452) in paragraph at lines 16688--16704
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[271] [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282]
[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
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[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
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[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
Underfull \hbox (badness 1917) in paragraph at lines 38156--38163
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
Underfull \hbox (badness 3668) in paragraph at lines 38726--38728
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
Underfull \hbox (badness 2401) in paragraph at lines 38829--38833
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
Underfull \hbox (badness 2111) in paragraph at lines 38992--38997
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 39008--39013
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
Underfull \hbox (badness 5417) in paragraph at lines 39526--39530
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
Underfull \hbox (badness 10000) in paragraph at lines 39587--39591
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
[659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669]
Underfull \vbox (badness 1237) has occurred while \output is active [670]
[671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682]
[683] [684] [685] [686] [687] [688] [689]
Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
Underfull \vbox (badness 10000) has occurred while \output is active [691]
[692] [693] [694]
Underfull \vbox (badness 10000) has occurred while \output is active [695]
Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
Underfull \hbox (badness 10000) in paragraph at lines 1576--1580
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
Underfull \hbox (badness 10000) in paragraph at lines 1964--1966
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[736] [737] [738]
Underfull \hbox (badness 6758) in paragraph at lines 2124--2127
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[739] [740] [741] [742] [743] [744] [745] [746]
Underfull \hbox (badness 10000) in paragraph at lines 2641--2642

[747] [748] [749] [750] [751] [752] [753]
Underfull \hbox (badness 1152) in paragraph at lines 3079--3081
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[754] [755] [756] [757] [758]
Underfull \hbox (badness 2856) in paragraph at lines 3400--3403
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3414--3416
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[759] [760]
Underfull \hbox (badness 1173) in paragraph at lines 3530--3540
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[761] [762] [763] [764] [765] [766] [767]
Underfull \vbox (badness 10000) has occurred while \output is active [768]
[769]
Underfull \vbox (badness 3803) has occurred while \output is active [770]
[771]
Underfull \hbox (badness 1067) in paragraph at lines 4230--4237
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[772] [773]
Underfull \hbox (badness 5231) in paragraph at lines 4391--4393
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[774]
Underfull \hbox (badness 1789) in paragraph at lines 4468--4470
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[775]
Underfull \hbox (badness 1377) in paragraph at lines 4518--4523
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[776]
Underfull \hbox (badness 2671) in paragraph at lines 4545--4553
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4594--4601
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4612--4614
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[777] [778]
Underfull \hbox (badness 1057) in paragraph at lines 4723--4728
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[779]
Underfull \hbox (badness 7344) in paragraph at lines 4783--4785
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[780] [781]
Underfull \hbox (badness 2035) in paragraph at lines 4907--4916
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
Underfull \hbox (badness 6775) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

Underfull \hbox (badness 7344) in paragraph at lines 4994--4996
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
Underfull \hbox (badness 1546) in paragraph at lines 5114--5122
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[786]
Underfull \hbox (badness 1648) in paragraph at lines 5191--5195
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[787] [788] [789] [790] [791] [792] [793]
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1032] [1033] [1034] [1035]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1106] [1107]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193]
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
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[1260] [1261]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1300] [1301]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6289--6291
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
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[1352] [1353] [1354]
Underfull \vbox (badness 10000) has occurred while \output is active [1355]
[1356] [1357] [1358] [1359] [1360] [1361] [1362]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
Underfull \hbox (badness 2626) in paragraph at lines 8704--8707
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
Underfull \hbox (badness 2503) in paragraph at lines 8804--8808
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9138--9140
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
Underfull \hbox (badness 1694) in paragraph at lines 10856--10859
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 4441) in paragraph at lines 11997--11999
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12004--12006
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 2894) in paragraph at lines 12338--12342
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
Underfull \hbox (badness 4518) in paragraph at lines 13020--13025
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 4518) in paragraph at lines 13667--13672
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2503) in paragraph at lines 14866--14870
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1418) in paragraph at lines 15375--15381
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518]
Underfull \vbox (badness 3803) has occurred while \output is active [1519]
[1520] [1521]
Underfull \hbox (badness 2359) in paragraph at lines 17001--17003
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
Underfull \vbox (badness 10000) has occurred while \output is active [1523]
Underfull \vbox (badness 10000) has occurred while \output is active [1524]
[1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535]
[1536]
Underfull \hbox (badness 1377) in paragraph at lines 17912--17917
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17917--17920
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 17930--17934
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
Underfull \hbox (badness 2662) in paragraph at lines 17938--17942
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1538] [1539]
Underfull \vbox (badness 3803) has occurred while \output is active [1540]
[1541] [1542] [1543] [1544] [1545] [1546] [1547]
Underfull \hbox (badness 1337) in paragraph at lines 18554--18557
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558]
[1559] [1560]
Underfull \hbox (badness 5563) in paragraph at lines 19280--19282
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1561] [1562] [1563] [1564] [1565] [1566]
Underfull \hbox (badness 2503) in paragraph at lines 19649--19652
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
Underfull \hbox (badness 10000) in paragraph at lines 19676--19678
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
Underfull \hbox (badness 1337) in paragraph at lines 21967--21973
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
Underfull \hbox (badness 10000) in paragraph at lines 23335--23338
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
Underfull \hbox (badness 3690) in paragraph at lines 23386--23390
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656]
[1657] [1658] [1659] [1660]
Underfull \vbox (badness 3803) has occurred while \output is active [1661]
[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
Underfull \hbox (badness 3514) in paragraph at lines 25599--25605
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
Underfull \hbox (badness 3514) in paragraph at lines 25980--25985
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724]
Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1725] [1726] [1727]
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[1729] [1730]
Underfull \hbox (badness 1337) in paragraph at lines 29484--29488
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
Underfull \hbox (badness 5161) in paragraph at lines 30061--30063
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
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[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
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[1782]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1850] [1851]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1852] [1853] [1854] [1855] [1856] [1857]
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1859]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1876] [1877]
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1878]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1879] [1880] [1881] [1882]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

Underfull \hbox (badness 1990) in paragraph at lines 2163--2166
[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3144--3150
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1898]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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                                                   [1911] [1912] [1913]
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[1925]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1926] [1927]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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Underfull \hbox (badness 10000) in paragraph at lines 5153--5162
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

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\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

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\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

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[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1934]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1935] [1936]
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6783
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1956] [1957] [1958]
Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
[1959] [1960] [1961] [1962] [1963]
Underfull \hbox (badness 1789) in paragraph at lines 7324--7326
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1977] [1978]
Underfull \hbox (badness 3000) in paragraph at lines 8276--8281
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[1998] [1999] [2000] [2001] [2002]
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[2003] [2004] [2005]
Underfull \hbox (badness 10000) in paragraph at lines 9969--9973
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2006]
Underfull \hbox (badness 10000) in paragraph at lines 10000--10006
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2007]
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2008]
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
[34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44]
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10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13]
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32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

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@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27] [28]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
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[59] [60]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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tents/Home[] 

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cal/lib/amd64[] @textrm as
[63]
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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (Concept index) [73]
(Environment variable index) [74] [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
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Output written on R-admin.pdf (78 pages, 443869 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
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entering extended mode
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
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[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
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@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
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hods"[] 
[22] [23]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
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[59] [60]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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tents/Home[] 

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/Home[] 
[61] [62]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
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ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (81 pages, 491199 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
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32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

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@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
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E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
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[59] [60]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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tents/Home[] 

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/Home[] 
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cal/lib/amd64[] @textrm as
[63]
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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
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msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
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ype1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (81 pages, 491217 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
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32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

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@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
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hods"[] 
[22] [23]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
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/lib/pkgconfig[] 
[59] [60]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

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/Home[] 
[61] [62]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
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(Acknowledgements)
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Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A
[31] (Function and variable index) [32] (Concept index) [33] [34] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
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(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
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verflow,unreachable,vla-bound[] 

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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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cu)),[] 
[99]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[126]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[135]
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s)) {[] 

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a)));[] 

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s)) {[] 
[136] [137] [138]
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xit);[] 
[139]
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[140]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[166]
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[167] [168] [169]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or

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 Ok) ) ) )
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mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/ecrm1095.603pk: successfully generated.
(Function and variable index) [176] (Concept index) [177] [178] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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Output written on R-exts.pdf (181 pages, 804979 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
[16] [17] [18] [19] [20] [21]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2023--2023
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2025--2025
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2164--2164
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4398--4398
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5627
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6499--6499
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7046--7055
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7411--7415
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
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 []@texttt -fsanitize=integer-divide-by-zero,null,return,shift,signed-integer-o
verflow,unreachable,vla-bound[] 

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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[99]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[126]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[135]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[136] [137] [138]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[139]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[140]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[166]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[167] [168] [169]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
Underfull \hbox (badness 10000) in paragraph at lines 13389--13393
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [176] (./R-exts.vrs [177] [178]) [179]
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Overfull \vbox (1.73251pt too high) has occurred while \output is active
(Concept index) [180] (./R-exts.cps [181]) [182] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
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amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (189 pages, 866782 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
[16] [17] [18] [19] [20] [21]
Underfull \hbox (badness 10000) in paragraph at lines 1701--1704
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2023--2023
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2025--2025
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2164--2164
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2375--2377
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4398--4398
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5627
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6499--6499
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 6912--6912
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7046--7055
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7411--7415
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
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 []@texttt -fsanitize=integer-divide-by-zero,null,return,shift,signed-integer-o
verflow,unreachable,vla-bound[] 

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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[99]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
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[126]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
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[135]
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[136] [137] [138]
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[139]
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[140]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
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tatic libR[] 
[166]
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[167] [168] [169]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [176] (./R-exts.vrs [177] [178]) [179]
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(Concept index) [180] (./R-exts.cps [181]) [182] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101]
Appendix F [102] [103] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
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(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] Chapter 2 [24] [25]
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 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
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 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (Concept index) [64] [65] )
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Output written on R-ints.pdf (68 pages, 380869 bytes).
Transcript written on R-ints.log.
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
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 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (./R-ints.vrs [64])
(Concept index) [65] (./R-ints.cps) [66] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/
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>
Output written on R-ints.pdf (71 pages, 429212 bytes).
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3983--3991
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (./R-ints.vrs [64])
(Concept index) [65] (./R-ints.cps) [66] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/t
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cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
t12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb
>
Output written on R-ints.pdf (71 pages, 429212 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (Concept Index) [60] Appendix A [61]
[62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
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Output written on R-lang.pdf (65 pages, 331183 bytes).
Transcript written on R-lang.log.
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
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[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
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Output written on R-lang.pdf (68 pages, 380234 bytes).
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
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[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
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installing R manuals in PDF format ...
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installing R info pages ...
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you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
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dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
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touch install-indep-stamp
gunzip -9v /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/*.gz
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	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir.old	
removed '/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /«PKGBUILDDIR»/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 1884
-rw-rw-r-- 1 root root 1186046 Jul 21 08:03 libRmath.a
-rwxrwxr-x 1 root root  738037 Jul 21 08:03 libRmath.so
drwxr-xr-x 1 root root      22 Jul 21 08:22 pkgconfig
'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/«PKGBUILDDIR»/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc; \
	cat /«PKGBUILDDIR»/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
dh_bash-completion	
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /«PKGBUILDDIR»/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /«PKGBUILDDIR»/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /«PKGBUILDDIR»/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS 
dh_strip	--sourcedir=/«PKGBUILDDIR»/debian/r-base-core --dbg-package=r-base-core-dbg
Unknown option: sourcedir
dh_strip 	--sourcedir=/«PKGBUILDDIR»/debian/r-mathlib
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.5.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.5.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libXext.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libICE.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libSM.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXss.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/stats/libs/stats.so debian/r-base-core/usr/lib/R/modules/lapack.so debian/r-base-core/usr/lib/R/lib/libR.so were not linked against libgfortran.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/grDevices/libs/cairo.so debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libglib-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-mathlib/usr/lib/libRmath.so.1.0.0 was not linked against libgomp.so.1 (it uses none of the library's symbols)
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_3.1.1-1_armhf.deb'.
dpkg-deb: building package `r-mathlib' in `../r-mathlib_3.1.1-1_armhf.deb'.
dpkg-deb: building package `r-base-core' in `../r-base-core_3.1.1-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-base_3.1.1-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build r-base-3.1.1
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140721-0824

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


r-base_3.1.1-1_armhf.changes:
─────────────────────────────

Format: 1.8
Date: Thu, 10 Jul 2014 05:04:12 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: armhf
Version: 3.1.1-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Changes:
 r-base (3.1.1-1) unstable; urgency=low
 .
   * New upstream version released this morning
Checksums-Sha1:
 ece2b76cb67aeac0e080033d29530bb8955ab51b 19488728 r-base-core_3.1.1-1_armhf.deb
 ba2b24b53c29fb404fa2da1a8303648737569f61 1155304 r-mathlib_3.1.1-1_armhf.deb
 ea602f13d77547de79f90b3de67b5501a563554e 2856496 r-base-core-dbg_3.1.1-1_armhf.deb
Checksums-Sha256:
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 4e6e3796945962760b9e96516f0254cc0d133e825f7e3c285a0ee2a72fc8ab1a 1155304 r-mathlib_3.1.1-1_armhf.deb
 be221474d117938edb80e4bb34198b43d0b8673ea1d017d8a1b12db7d076c7ef 2856496 r-base-core-dbg_3.1.1-1_armhf.deb
Files:
 b235c6351efd980ed2a366d19ee52f34 19488728 gnu-r optional r-base-core_3.1.1-1_armhf.deb
 c3048317b3b256ec1ba872736b6a362d 1155304 gnu-r optional r-mathlib_3.1.1-1_armhf.deb
 f67385da53c0677043df860de33ed84d 2856496 debug extra r-base-core-dbg_3.1.1-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


r-base-core_3.1.1-1_armhf.deb
─────────────────────────────

 new debian package, version 2.0.
 size 19488728 bytes: control archive=29260 bytes.
     118 bytes,     6 lines      conffiles            
    2711 bytes,    44 lines      control              
   69261 bytes,   876 lines      md5sums              
    2396 bytes,    70 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
     667 bytes,    34 lines   *  preinst              #!/bin/sh
     689 bytes,    26 lines   *  prerm                #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 3.1.1-1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 30528
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libgfortran3 (>= 4.3), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libice6 (>= 1:1.0.0), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3 (>= 8.10), libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libsm6, libtcl8.5 (>= 8.5.0), libtiff5 (>= 4.0.3), libtk8.5 (>= 8.5.0), libx11-6, libxext6, libxss1, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0)
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2014-07-21 08:22 ./
drwxr-xr-x root/root         0 2014-07-21 08:03 ./etc/
drwxr-xr-x root/root         0 2014-07-21 08:22 ./etc/R/
-rw-r--r-- root/root       792 2014-07-21 08:22 ./etc/R/Rprofile.site
-rw-r--r-- root/root       608 2014-07-21 08:22 ./etc/R/Renviron.site
-rw-r--r-- root/root      6035 2014-07-21 08:03 ./etc/R/Makeconf
-rw-r--r-- root/root      1159 2014-07-21 08:03 ./etc/R/repositories
-rw-r--r-- root/root       640 2014-07-21 08:03 ./etc/R/ldpaths
drwxr-xr-x root/root         0 2014-07-21 08:03 ./etc/ld.so.conf.d/
drwxr-xr-x root/root         0 2014-07-21 08:22 ./etc/bash_completion.d/
-rw-r--r-- root/root     13294 2014-07-21 07:11 ./etc/bash_completion.d/R
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/bin/
-rwxr-xr-x root/root      8595 2014-07-21 08:03 ./usr/bin/R
-rwxr-xr-x root/root      9744 2014-07-21 08:22 ./usr/bin/Rscript
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/
-rw-r--r-- root/root       165 2014-07-21 08:03 ./usr/lib/R/etc/javaconf
-rw-r--r-- root/root      1553 2014-07-21 08:03 ./usr/lib/R/etc/Renviron.orig
-rw-r--r-- root/root      1856 2014-07-21 08:22 ./usr/lib/R/etc/Renviron.ucf
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/bin/
-rwxr-xr-x root/root      1828 2014-07-21 08:03 ./usr/lib/R/bin/BATCH
-rwxr-xr-x root/root      2156 2014-07-21 08:03 ./usr/lib/R/bin/COMPILE
-rwxr-xr-x root/root       823 2014-07-21 08:03 ./usr/lib/R/bin/INSTALL
-rwxr-xr-x root/root      1433 2014-07-21 08:03 ./usr/lib/R/bin/LINK
-rwxr-xr-x root/root       158 2014-07-21 08:03 ./usr/lib/R/bin/REMOVE
-rwxr-xr-x root/root       312 2014-07-21 08:03 ./usr/lib/R/bin/Rd2pdf
-rwxr-xr-x root/root       359 2014-07-21 08:03 ./usr/lib/R/bin/Rdconv
-rwxr-xr-x root/root       258 2014-07-21 08:03 ./usr/lib/R/bin/Rdiff
-rwxr-xr-x root/root       310 2014-07-21 08:03 ./usr/lib/R/bin/Rprof
-rwxr-xr-x root/root       155 2014-07-21 08:03 ./usr/lib/R/bin/SHLIB
-rwxr-xr-x root/root       318 2014-07-21 08:03 ./usr/lib/R/bin/Stangle
-rwxr-xr-x root/root       316 2014-07-21 08:03 ./usr/lib/R/bin/Sweave
-rwxr-xr-x root/root       317 2014-07-21 08:03 ./usr/lib/R/bin/build
-rwxr-xr-x root/root       317 2014-07-21 08:03 ./usr/lib/R/bin/check
-rwxr-xr-x root/root      9459 2014-07-21 08:03 ./usr/lib/R/bin/config
-rwxr-xr-x root/root      1375 2014-07-21 08:03 ./usr/lib/R/bin/Rcmd
-rwxr-xr-x root/root      3608 2014-07-21 08:03 ./usr/lib/R/bin/f77_f2c
-rwxr-xr-x root/root     14566 2014-07-21 08:03 ./usr/lib/R/bin/javareconf
-rwxr-xr-x root/root      3496 2014-07-21 08:03 ./usr/lib/R/bin/mkinstalldirs
-rwxr-xr-x root/root       483 2014-07-21 08:03 ./usr/lib/R/bin/pager
-rwxr-xr-x root/root      4121 2014-07-21 08:03 ./usr/lib/R/bin/rtags
-rwxr-xr-x root/root    274354 2014-07-21 08:03 ./usr/lib/R/bin/libtool
-rwxr-xr-x root/root      8595 2014-07-21 08:03 ./usr/lib/R/bin/R
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/bin/exec/
-rwxr-xr-x root/root      5580 2014-07-21 08:22 ./usr/lib/R/bin/exec/R
-rwxr-xr-x root/root      9744 2014-07-21 08:22 ./usr/lib/R/bin/Rscript
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/lib/
-rw-r--r-- root/root   1973560 2014-07-21 08:22 ./usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/lib/R/modules/
-rw-r--r-- root/root     55088 2014-07-21 08:22 ./usr/lib/R/modules/internet.so
-rw-r--r-- root/root     38480 2014-07-21 08:22 ./usr/lib/R/modules/lapack.so
-rw-r--r-- root/root    386492 2014-07-21 08:22 ./usr/lib/R/modules/vfonts.so
-rw-r--r-- root/root     93892 2014-07-21 08:22 ./usr/lib/R/modules/R_X11.so
-rw-r--r-- root/root     43072 2014-07-21 08:22 ./usr/lib/R/modules/R_de.so
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/base/
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/base/R/
-rw-r--r-- root/root      5086 2014-07-21 08:03 ./usr/lib/R/library/base/R/Rprofile
-rw-r--r-- root/root    722191 2014-07-21 08:03 ./usr/lib/R/library/base/R/base.rdb
-rw-r--r-- root/root     12432 2014-07-21 08:03 ./usr/lib/R/library/base/R/base.rdx
-rw-r--r-- root/root      4434 2014-07-21 08:03 ./usr/lib/R/library/base/R/base
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/base/demo/
-rw-r--r-- root/root      1179 2014-07-21 08:03 ./usr/lib/R/library/base/demo/error.catching.R
-rw-r--r-- root/root      4252 2014-07-21 08:03 ./usr/lib/R/library/base/demo/is.things.R
-rw-r--r-- root/root      2115 2014-07-21 08:03 ./usr/lib/R/library/base/demo/recursion.R
-rw-r--r-- root/root      1560 2014-07-21 08:03 ./usr/lib/R/library/base/demo/scoping.R
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/
-rw-r--r-- root/root       469 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/package.rds
-rw-r--r-- root/root     20432 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/Rd.rds
-rw-r--r-- root/root     21024 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/hsearch.rds
-rw-r--r-- root/root     12140 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/links.rds
-rw-r--r-- root/root       245 2014-07-21 08:03 ./usr/lib/R/library/base/Meta/demo.rds
drwxr-xr-x root/root         0 2014-07-21 08:03 ./usr/lib/R/library/base/help/
-rw-r--r-- root/root      2986 2014-07-21 08:03 ./usr/lib/R/library/base/help/paths.rds
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lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/repositories -> /etc/R/repositories
lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
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lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf
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lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
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r-mathlib_3.1.1-1_armhf.deb
───────────────────────────

 new debian package, version 2.0.
 size 1155304 bytes: control archive=2023 bytes.
    1780 bytes,    39 lines      control              
    1219 bytes,    18 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
 Source: r-base
 Version: 3.1.1-1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 1478
 Depends: libc6 (>= 2.4), libgomp1 (>= 4.2.1)
 Recommends: r-base-core (= 3.1.1-1), r-base-dev (= 3.1.1-1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

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-rw-r--r-- root/root     20761 2014-07-21 07:11 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2014-07-21 08:22 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1370 2012-04-15 22:05 ./usr/share/doc/r-mathlib/examples/test.c
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lrwxrwxrwx root/root         0 2014-07-21 08:22 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0


r-base-core-dbg_3.1.1-1_armhf.deb
─────────────────────────────────

 new debian package, version 2.0.
 size 2856496 bytes: control archive=1964 bytes.
    1764 bytes,    38 lines      control              
    1937 bytes,    24 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.1.1-1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 9799
 Depends: r-base-core (= 3.1.1-1), r-base-dev (= 3.1.1-1)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 271984
Build-Time: 4412
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 1955
Job: r-base_3.1.1-1
Machine Architecture: armhf
Package: r-base
Package-Time: 6433
Source-Version: 3.1.1-1
Space: 271984
Status: successful
Version: 3.1.1-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140721-0824
Build needed 01:47:13, 271984k disc space
Raspbian Package Auto-Building

Build log for r-base (3.1.1-1) on armhf
