Raspbian Package Auto-Building

r-base → 3.1.1-1+deb8u1 → armhf → 2017-03-19 18:15:04

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| r-base 3.1.1-1+deb8u1 (armhf)                Sun, 19 Mar 2017 16:13:15 +0000 |
+==============================================================================+

Package: r-base
Version: 3.1.1-1+deb8u1
Source Version: 3.1.1-1+deb8u1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-7c72f8a7-4f7e-4bae-86c6-6ed6e190cc0b' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7746 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8980 kB]
Fetched 16.7 MB in 32s (520 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
Building dependency tree...
Need to get 28.7 MB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1+deb8u1 (dsc) [2797 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1+deb8u1 (tar) [28.6 MB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-base 3.1.1-1+deb8u1 (diff) [98.5 kB]
Fetched 28.7 MB in 10s (2699 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-base-buf0cv/r-base-3.1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-base-buf0cv' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/<<BUILDDIR>>/resolver-gLrqjz/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keyring `/<<BUILDDIR>>/resolver-gLrqjz/gpg/secring.gpg' created
gpg: keyring `/<<BUILDDIR>>/resolver-gLrqjz/gpg/pubring.gpg' created
gpg: /<<BUILDDIR>>/resolver-gLrqjz/gpg/trustdb.gpg: trustdb created
gpg: key 48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1  (RSA: 1)
gpg: key 48F77B2E: secret key imported
gpg: key 48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
Ign copy: ./ InRelease
Get:1 copy: ./ Release.gpg [299 B]
Get:2 copy: ./ Release [957 B]
Get:3 copy: ./ Sources [349 B]
Get:4 copy: ./ Packages [433 B]
Fetched 2038 B in 0s (20.1 kB/s)
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 41 not upgraded.
Need to get 818 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gLrqjz/apt_archive/ ./ sbuild-build-depends-core-dummy 0.invalid.0 [818 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 818 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12000 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
Filtered Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package `sbuild-build-depends-r-base-dummy' in `/<<BUILDDIR>>/resolver-gLrqjz/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-base-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign copy: ./ InRelease
Get:1 copy: ./ Release.gpg [299 B]
Get:2 copy: ./ Release [963 B]
Get:3 copy: ./ Sources [778 B]
Get:4 copy: ./ Packages [826 B]
Fetched 2866 B in 0s (24.0 kB/s)
Reading package lists...
Reading package lists...

Install r-base build dependencies (apt-based resolver)
------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libelfg0
  libexpat1 libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-4.9-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-glx libglapi-mesa libglib2.0-0
  libglib2.0-bin libglib2.0-data libglib2.0-dev libgnutls-deb0-28
  libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk2.0-0
  libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
  libharfbuzz0b libhogweed2 libice-dev libice6 libicu52 libidn11 libijs-0.35
  libintl-perl libjasper1 libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libjson-c2 libk5crypto3 libkeyutils1
  libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3
  libogg0 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng12-0 libpng12-dev libpoppler46
  libpotrace0 libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev
  libsctp1 libsigsegv2 libsm-dev libsm6 libsndfile1 libsqlite3-0 libssl1.0.0
  libsynctex1 libtasn1-6 libtcl8.5 libtext-unidecode-perl libthai-data
  libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libtk8.5
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1
  libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev
  libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6
  libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk
  openjdk-7-jre openjdk-7-jre-headless openssl pkg-config po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal shared-mime-info tcl8.5 tcl8.5-dev tex-common texinfo
  texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5
  tk8.5-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata
  tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev
  x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc
  gfortran-doc gfortran-4.9-doc libgfortran3-dbg groff equivs
  libasound2-plugins alsa-utils libcairo2-doc cups-common libglib2.0-doc
  gnutls-bin krb5-doc krb5-user librsvg2-common gvfs libice-doc
  libintl-xs-perl libjasper-runtime liblcms2-utils liblzma-doc ncurses-doc
  imagemagick libpango1.0-doc pcscd pulseaudio readline-doc libsm-doc
  libxcb-doc libxext-doc libxt-doc less www-browser mail-transport-agent inews
  openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns
  sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei
  ttf-wqy-zenhei fonts-indic libmail-box-perl poppler-utils ghostscript
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk
  python2.7-doc binfmt-support tcl-tclreadline tcl8.5-doc texinfo-doc-nonfree
  perl-tk gv postscript-viewer xpdf-reader pdf-viewer latexdiff latexmk dvidvi
  fragmaster lacheck purifyeps xindy chktex dvipng cm-super python-pygments
  libfile-which-perl texlive-pstricks libtcltk-ruby dot2tex tk8.5-doc gvfs-bin
  xfs xserver
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev bzip2-doc
  libgl1-mesa-dri xdg-user-dirs hicolor-icon-theme libgtk2.0-bin krb5-locales
  lksctp-tools tcpd libx11-doc libxml-sax-expat-perl xml-core libgnome2-0
  libgnomevfs2-0 libgconf2-4 icedtea-7-jre-jamvm libmail-sendmail-perl lmodern
  ruby wish libfile-homedir-perl libyaml-tiny-perl texlive-fonts-extra-doc
  tipa texlive-fonts-recommended-doc tex-gyre texlive-latex-base-doc
  texlive-latex-extra-doc prosper texlive-latex-recommended-doc
  texlive-pictures-doc prerex xterm x-terminal-emulator libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  bash-completion bison bsdmainutils ca-certificates ca-certificates-java
  debhelper default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base
  gfortran gfortran-4.9 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0
  groff-base intltool-debian java-common libasound2 libasound2-data
  libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni
  libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libelfg0
  libexpat1 libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-4.9-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-glx libglapi-mesa libglib2.0-0
  libglib2.0-bin libglib2.0-data libglib2.0-dev libgnutls-deb0-28
  libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk2.0-0
  libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
  libharfbuzz0b libhogweed2 libice-dev libice6 libicu52 libidn11 libijs-0.35
  libintl-perl libjasper1 libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libjson-c2 libk5crypto3 libkeyutils1
  libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnettle4 libnspr4 libnss3
  libogg0 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpango1.0-dev
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils
  libpaper1 libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-dev libpoppler46 libpotrace0 libptexenc1
  libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libreadline-dev libreadline6-dev libsctp1 libsigsegv2
  libsm-dev libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libsynctex1 libtasn1-6
  libtcl8.5 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev
  libtiffxx5 libtinfo-dev libtk8.5 libunistring0 libvorbis0a libvorbisenc2
  libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6
  libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
  libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1
  libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev
  libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev libxft2
  libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2
  libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1
  libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libzzip-0-13 m4
  man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless
  openssl pkg-config po-debconf poppler-data preview-latex-style python
  python-minimal python2.7 python2.7-minimal sbuild-build-depends-r-base-dummy
  shared-mime-info tcl8.5 tcl8.5-dev tex-common texinfo texlive-base
  texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5
  tk8.5-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java
  ucf x11-common x11-xkb-utils x11proto-core-dev x11proto-input-dev
  x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev
  xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
The following packages will be upgraded:
  libpcre3 libpng12-0 tzdata
3 upgraded, 296 newly installed, 0 to remove and 38 not upgraded.
Need to get 433 MB of archives.
After this operation, 1239 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gLrqjz/apt_archive/ ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1082 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main libpcre3 armhf 2:8.35-3.3+deb8u4 [301 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1t-1+deb8u6 [853 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-8 [1045 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main bash-completion all 1:2.1-4 [182 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libnettle4 armhf 2.7.1-5+deb8u2 [178 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libhogweed2 armhf 2.7.1-5+deb8u2 [117 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.7-1 [66.7 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libtasn1-6 armhf 4.2-3+deb8u2 [43.4 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libgnutls-deb0-28 armhf 3.3.8-6+deb8u4 [625 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.12.1+dfsg-19+deb8u2 [55.4 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.12.1+dfsg-19+deb8u2 [109 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.12.1+dfsg-19+deb8u2 [258 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-19+deb8u2 [130 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libidn11 armhf 1.29-1+deb8u2 [133 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.22+15-2+deb8u3 [244 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.7.1-1+deb8u2 [377 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libwrap0 armhf 7.6.q-25 [55.5 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-5+deb8u4 [705 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.9-2+deb8u1 [376 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.9-2+deb8u1 [1150 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.58 [36.0 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-6+deb8u3 [60.5 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.9-2+deb8u1 [1812 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.9-2+deb8u1 [252 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.9-1 [151 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.50-2+deb8u3 [161 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.5.2-3+deb8u1 [411 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0030 [69.7 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.11.0-6.3+deb8u1 [312 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.11.0-6.3+deb8u1 [402 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main fonts-droid all 1:4.4.4r2-6 [3729 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main fonts-lato all 2.0-1 [2684 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libasound2-data all 1.0.28-1 [64.8 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libasound2 armhf 1.0.28-1 [316 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libasyncns0 armhf 0.8-5 [11.4 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.42.1-1 [2250 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libatk1.0-data all 2.14.0-1 [181 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libatk1.0-0 armhf 2.14.0-1 [84.2 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.32.6-3 [422 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.10-3 [38.1 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-3 [126 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-3 [656 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.14.0-2.1+deb8u2 [662 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libjpeg62-turbo armhf 1:1.3.1-12 [97.0 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libjasper1 armhf 1.900.1-debian1-2.4+deb8u2 [110 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libtiff5 armhf 4.0.3-12.3+deb8u2 [197 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-common all 2.31.1-2+deb8u5 [294 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libgdk-pixbuf2.0-0 armhf 2.31.1-2+deb8u5 [148 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-common all 2.24.25-3+deb8u1 [3185 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libavahi-common-data armhf 0.6.31-5 [98.8 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libavahi-common3 armhf 0.6.31-5 [48.0 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libavahi-client3 armhf 0.6.31-5 [50.6 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libcups2 armhf 1.7.5-11+deb8u1 [253 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.21-1 [159 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.8-1 [29.1 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.21-1 [43.4 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.3.6-1~deb8u1 [62.5 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0b armhf 0.9.35-2 [464 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libxcomposite1 armhf 1:0.4.4-1 [16.8 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-2 [19.6 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main libxcursor1 armhf 1:1.1.14-1 [34.7 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-2 [13.9 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main libxi6 armhf 2:1.7.4-1 [73.4 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libxinerama1 armhf 2:1.1.3-1 [16.9 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main libxrandr2 armhf 2:1.4.2-1 [31.7 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main shared-mime-info armhf 1.3-1 [630 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main libgtk2.0-0 armhf 2.24.25-3+deb8u1 [2015 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java all 0.30.5-1 [30.3 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libatk-wrapper-java-jni armhf 0.30.5-1 [20.6 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main libcairo-gobject2 armhf 1.14.0-2.1+deb8u2 [304 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main libcairo-script-interpreter2 armhf 1.14.0-2.1+deb8u2 [331 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main libcupsimage2 armhf 1.7.5-11+deb8u1 [115 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libcupsfilters1 armhf 1.0.61-5+deb8u3 [97.9 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libelfg0 armhf 0.8.13-5 [55.7 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libogg0 armhf 1.3.2-1 [17.2 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libflac8 armhf 1.3.0-3 [79.0 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main libfontenc1 armhf 1:1.1.2-1 [23.9 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.9.2-10 [154 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main libgif4 armhf 4.1.6-11+deb8u1 [38.0 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 10.3.2-1+deb8u1 [66.8 kB]
Get:104 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-3 [163 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.10-3 [12.1 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main libxcb-dri3-0 armhf 1.10-3 [10.6 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.10-3 [23.8 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main libxcb-present0 armhf 1.10-3 [10.8 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libxcb-sync1 armhf 1.10-3 [13.2 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libxshmfence1 armhf 1.1-4+rpi1 [6704 B]
Get:111 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 10.3.2-1+deb8u1 [170 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-gobject0 armhf 0.9.35-2 [364 kB]
Get:114 http://172.17.0.1/private/ jessie-staging/main libicu52 armhf 52.1-8+deb8u4 [6556 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-icu0 armhf 0.9.35-2 [359 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+7 [287 kB]
Get:117 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:118 http://172.17.0.1/private/ jessie-staging/main libijs-0.35 armhf 0.35-10 [18.5 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main liblcms2-2 armhf 2.6-3+deb8u1 [116 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main libnspr4 armhf 2:4.12-1+debu8u1 [95.5 kB]
Get:121 http://172.17.0.1/private/ jessie-staging/main libnss3 armhf 2:3.26-1+debu8u1 [951 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main libpangoxft-1.0-0 armhf 1.36.8-3 [193 kB]
Get:124 http://172.17.0.1/private/ jessie-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:125 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 2:8.35-3.3+deb8u4 [140 kB]
Get:126 http://172.17.0.1/private/ jessie-staging/main libpcsclite1 armhf 1.8.13-1+deb8u1 [53.7 kB]
Get:127 http://172.17.0.1/private/ jessie-staging/main libopenjpeg5 armhf 1:1.5.2-3 [93.3 kB]
Get:128 http://172.17.0.1/private/ jessie-staging/main libpoppler46 armhf 0.26.5-2+deb8u1 [1092 kB]
Get:129 http://172.17.0.1/private/ jessie-staging/main libjson-c2 armhf 0.11-4 [22.7 kB]
Get:130 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.2-1 [31.2 kB]
Get:131 http://172.17.0.1/private/ jessie-staging/main libvorbis0a armhf 1.3.4-2 [82.7 kB]
Get:132 http://172.17.0.1/private/ jessie-staging/main libvorbisenc2 armhf 1.3.4-2 [72.0 kB]
Get:133 http://172.17.0.1/private/ jessie-staging/main libsndfile1 armhf 1.0.25-9.1+deb8u1 [204 kB]
Get:134 http://172.17.0.1/private/ jessie-staging/main libxtst6 armhf 2:1.2.2-1 [26.8 kB]
Get:135 http://172.17.0.1/private/ jessie-staging/main libpulse0 armhf 5.0-13 [221 kB]
Get:136 http://172.17.0.1/private/ jessie-staging/main libsctp1 armhf 1.0.16+dfsg-2 [27.1 kB]
Get:137 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:138 http://172.17.0.1/private/ jessie-staging/main tzdata all 2016j-0+deb8u1 [186 kB]
Get:139 http://172.17.0.1/private/ jessie-staging/main libtcl8.5 armhf 8.5.17-1 [660 kB]
Get:140 http://172.17.0.1/private/ jessie-staging/main libtiffxx5 armhf 4.0.3-12.3+deb8u2 [77.6 kB]
Get:141 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:142 http://172.17.0.1/private/ jessie-staging/main libtk8.5 armhf 8.5.17-1 [657 kB]
Get:143 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:144 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:145 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.2-1 [50.8 kB]
Get:146 http://172.17.0.1/private/ jessie-staging/main libxpm4 armhf 1:3.5.12-0+deb8u1 [43.7 kB]
Get:147 http://172.17.0.1/private/ jessie-staging/main libxaw7 armhf 2:1.0.12-2 [159 kB]
Get:148 http://172.17.0.1/private/ jessie-staging/main libxfont1 armhf 1:1.5.1-1 [118 kB]
Get:149 http://172.17.0.1/private/ jessie-staging/main libxkbfile1 armhf 1:1.0.8-1 [74.9 kB]
Get:150 http://172.17.0.1/private/ jessie-staging/main libxmuu1 armhf 2:1.1.2-1 [22.8 kB]
Get:151 http://172.17.0.1/private/ jessie-staging/main libzzip-0-13 armhf 0.13.62-3 [51.3 kB]
Get:152 http://172.17.0.1/private/ jessie-staging/main openssl armhf 1.0.1t-1+deb8u6 [652 kB]
Get:153 http://172.17.0.1/private/ jessie-staging/main ca-certificates all 20141019+deb8u2 [207 kB]
Get:154 http://172.17.0.1/private/ jessie-staging/main java-common all 0.52 [136 kB]
Get:155 http://172.17.0.1/private/ jessie-staging/main default-jre-headless armhf 2:1.7-52 [9114 B]
Get:156 http://172.17.0.1/private/ jessie-staging/main ca-certificates-java all 20140324 [13.7 kB]
Get:157 http://172.17.0.1/private/ jessie-staging/main tzdata-java all 2016j-0+deb8u1 [81.1 kB]
Get:158 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre-headless armhf 7u121-2.6.8-2~deb8u1+rpi1 [37.5 MB]
Get:159 http://172.17.0.1/private/ jessie-staging/main poppler-data all 0.4.7-1 [1491 kB]
Get:160 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.22+15-2+deb8u3 [60.1 kB]
Get:161 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:162 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:163 http://172.17.0.1/private/ jessie-staging/main libbison-dev armhf 2:3.0.2.dfsg-2 [425 kB]
Get:164 http://172.17.0.1/private/ jessie-staging/main bison armhf 2:3.0.2.dfsg-2 [854 kB]
Get:165 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.19.3-2 [1167 kB]
Get:166 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:167 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu3 [220 kB]
Get:168 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20150101+deb8u2 [817 kB]
Get:169 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jre armhf 7u121-2.6.8-2~deb8u1+rpi1 [152 kB]
Get:170 http://172.17.0.1/private/ jessie-staging/main default-jre armhf 2:1.7-52 [966 B]
Get:171 http://172.17.0.1/private/ jessie-staging/main openjdk-7-jdk armhf 7u121-2.6.8-2~deb8u1+rpi1 [13.7 MB]
Get:172 http://172.17.0.1/private/ jessie-staging/main default-jdk armhf 2:1.7-52 [966 B]
Get:173 http://172.17.0.1/private/ jessie-staging/main fonts-cabin all 1.5-2 [139 kB]
Get:174 http://172.17.0.1/private/ jessie-staging/main fonts-comfortaa all 2.003-1 [133 kB]
Get:175 http://172.17.0.1/private/ jessie-staging/main fonts-crosextra-caladea all 20130214-1 [82.1 kB]
Get:176 http://172.17.0.1/private/ jessie-staging/main fonts-crosextra-carlito all 20130920-1 [745 kB]
Get:177 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-extra all 2.34-1 [1771 kB]
Get:178 http://172.17.0.1/private/ jessie-staging/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB]
Get:179 http://172.17.0.1/private/ jessie-staging/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB]
Get:180 http://172.17.0.1/private/ jessie-staging/main fonts-font-awesome all 4.2.0~dfsg-1 [346 kB]
Get:181 http://172.17.0.1/private/ jessie-staging/main fonts-freefont-otf all 20120503-4 [3186 kB]
Get:182 http://172.17.0.1/private/ jessie-staging/main fonts-freefont-ttf all 20120503-4 [4262 kB]
Get:183 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-artemisia all 1.1-5 [259 kB]
Get:184 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-complutum all 1.1-6 [41.6 kB]
Get:185 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-didot all 1.1-6 [278 kB]
Get:186 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-neohellenic all 1.1-6 [215 kB]
Get:187 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-olga all 1.1-5 [33.2 kB]
Get:188 http://172.17.0.1/private/ jessie-staging/main fonts-gfs-solomos all 1.1-5 [40.6 kB]
Get:189 http://172.17.0.1/private/ jessie-staging/main fonts-inconsolata all 001.010-5 [61.6 kB]
Get:190 http://172.17.0.1/private/ jessie-staging/main fonts-junicode all 0.7.8-2 [643 kB]
Get:191 http://172.17.0.1/private/ jessie-staging/main fonts-linuxlibertine all 5.3.0-2 [1713 kB]
Get:192 http://172.17.0.1/private/ jessie-staging/main fonts-lobster all 2.0-2 [39.5 kB]
Get:193 http://172.17.0.1/private/ jessie-staging/main fonts-lobstertwo all 2.0-2 [94.0 kB]
Get:194 http://172.17.0.1/private/ jessie-staging/main fonts-oflb-asana-math all 000.907-6 [245 kB]
Get:195 http://172.17.0.1/private/ jessie-staging/main fonts-sil-gentium all 20081126:1.02-13 [241 kB]
Get:196 http://172.17.0.1/private/ jessie-staging/main fonts-sil-gentium-basic all 1.1-7 [382 kB]
Get:197 http://172.17.0.1/private/ jessie-staging/main libgfortran-4.9-dev armhf 4.9.2-10 [179 kB]
Get:198 http://172.17.0.1/private/ jessie-staging/main gfortran-4.9 armhf 4.9.2-10 [4525 kB]
Get:199 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.9.2-2 [1294 B]
Get:200 http://172.17.0.1/private/ jessie-staging/main libgirepository-1.0-1 armhf 1.42.0-2.2 [82.9 kB]
Get:201 http://172.17.0.1/private/ jessie-staging/main gir1.2-glib-2.0 armhf 1.42.0-2.2 [141 kB]
Get:202 http://172.17.0.1/private/ jessie-staging/main gir1.2-freedesktop armhf 1.42.0-2.2 [22.1 kB]
Get:203 http://172.17.0.1/private/ jessie-staging/main gir1.2-pango-1.0 armhf 1.36.8-3 [201 kB]
Get:204 http://172.17.0.1/private/ jessie-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:205 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:206 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:207 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-7 [27.5 kB]
Get:208 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-6+deb8u3 [115 kB]
Get:209 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:210 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.50-2+deb8u3 [237 kB]
Get:211 http://172.17.0.1/private/ jessie-staging/main libfreetype6-dev armhf 2.5.2-3+deb8u1 [587 kB]
Get:212 http://172.17.0.1/private/ jessie-staging/main pkg-config armhf 0.28-1 [55.1 kB]
Get:213 http://172.17.0.1/private/ jessie-staging/main libfontconfig1-dev armhf 2.11.0-6.3+deb8u1 [876 kB]
Get:214 http://172.17.0.1/private/ jessie-staging/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:215 http://172.17.0.1/private/ jessie-staging/main x11proto-core-dev all 7.0.26-1 [729 kB]
Get:216 http://172.17.0.1/private/ jessie-staging/main libxau-dev armhf 1:1.0.8-1 [23.0 kB]
Get:217 http://172.17.0.1/private/ jessie-staging/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB]
Get:218 http://172.17.0.1/private/ jessie-staging/main x11proto-input-dev all 2.3.1-1 [157 kB]
Get:219 http://172.17.0.1/private/ jessie-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:220 http://172.17.0.1/private/ jessie-staging/main xtrans-dev all 1.3.4-1 [99.3 kB]
Get:221 http://172.17.0.1/private/ jessie-staging/main libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:222 http://172.17.0.1/private/ jessie-staging/main libxcb1-dev armhf 1.10-3 [78.1 kB]
Get:223 http://172.17.0.1/private/ jessie-staging/main libx11-dev armhf 2:1.6.2-3 [726 kB]
Get:224 http://172.17.0.1/private/ jessie-staging/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB]
Get:225 http://172.17.0.1/private/ jessie-staging/main libxrender-dev armhf 1:0.9.8-1 [38.8 kB]
Get:226 http://172.17.0.1/private/ jessie-staging/main x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:227 http://172.17.0.1/private/ jessie-staging/main libxext-dev armhf 2:1.3.3-1 [102 kB]
Get:228 http://172.17.0.1/private/ jessie-staging/main libice-dev armhf 2:1.0.9-1 [58.1 kB]
Get:229 http://172.17.0.1/private/ jessie-staging/main libsm-dev armhf 2:1.2.2-1 [33.5 kB]
Get:230 http://172.17.0.1/private/ jessie-staging/main libpixman-1-dev armhf 0.32.6-3 [440 kB]
Get:231 http://172.17.0.1/private/ jessie-staging/main libxcb-render0-dev armhf 1.10-3 [21.7 kB]
Get:232 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0-dev armhf 1.10-3 [12.4 kB]
Get:233 http://172.17.0.1/private/ jessie-staging/main libglib2.0-data all 2.42.1-1 [2173 kB]
Get:234 http://172.17.0.1/private/ jessie-staging/main libglib2.0-bin armhf 2.42.1-1 [1334 kB]
Get:235 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 2:8.35-3.3+deb8u4 [413 kB]
Get:236 http://172.17.0.1/private/ jessie-staging/main libglib2.0-dev armhf 2.42.1-1 [2472 kB]
Get:237 http://172.17.0.1/private/ jessie-staging/main libcairo2-dev armhf 1.14.0-2.1+deb8u2 [784 kB]
Get:238 http://172.17.0.1/private/ jessie-staging/main libjbig2dec0 armhf 0.11+20120125-1 [46.4 kB]
Get:239 http://172.17.0.1/private/ jessie-staging/main libgs9-common all 9.06~dfsg-2+deb8u4 [1979 kB]
Get:240 http://172.17.0.1/private/ jessie-staging/main libgs9 armhf 9.06~dfsg-2+deb8u4 [1600 kB]
Get:241 http://172.17.0.1/private/ jessie-staging/main libharfbuzz-dev armhf 0.9.35-2 [507 kB]
Get:242 http://172.17.0.1/private/ jessie-staging/main libintl-perl all 1.23-1+deb8u1 [847 kB]
Get:243 http://172.17.0.1/private/ jessie-staging/main libjbig-dev armhf 2.1-3.1 [27.6 kB]
Get:244 http://172.17.0.1/private/ jessie-staging/main libjpeg62-turbo-dev armhf 1:1.3.1-12 [400 kB]
Get:245 http://172.17.0.1/private/ jessie-staging/main libjpeg-dev all 1:1.3.1-12 [49.3 kB]
Get:246 http://172.17.0.1/private/ jessie-staging/main libkpathsea6 armhf 2014.20140926.35254-6 [145 kB]
Get:247 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:248 http://172.17.0.1/private/ jessie-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:249 http://172.17.0.1/private/ jessie-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:250 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20140913-1 [65.4 kB]
Get:251 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20140913-1 [154 kB]
Get:252 http://172.17.0.1/private/ jessie-staging/main libxft-dev armhf 2.3.2-1 [59.1 kB]
Get:253 http://172.17.0.1/private/ jessie-staging/main libpango1.0-dev armhf 1.36.8-3 [439 kB]
Get:254 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:255 http://172.17.0.1/private/ jessie-staging/main libpotrace0 armhf 1.12-1+deb8u1 [23.1 kB]
Get:256 http://172.17.0.1/private/ jessie-staging/main libptexenc1 armhf 2014.20140926.35254-6 [52.1 kB]
Get:257 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:258 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:259 http://172.17.0.1/private/ jessie-staging/main libsynctex1 armhf 2014.20140926.35254-6 [54.4 kB]
Get:260 http://172.17.0.1/private/ jessie-staging/main libtext-unidecode-perl all 1.22-1 [102 kB]
Get:261 http://172.17.0.1/private/ jessie-staging/main libtiff5-dev armhf 4.0.3-12.3+deb8u2 [320 kB]
Get:262 http://172.17.0.1/private/ jessie-staging/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB]
Get:263 http://172.17.0.1/private/ jessie-staging/main libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:264 http://172.17.0.1/private/ jessie-staging/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:265 http://172.17.0.1/private/ jessie-staging/main libxml-libxml-perl armhf 2.0116+dfsg-1+deb8u1 [341 kB]
Get:266 http://172.17.0.1/private/ jessie-staging/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:267 http://172.17.0.1/private/ jessie-staging/main libxss-dev armhf 1:1.2.2-1 [22.7 kB]
Get:268 http://172.17.0.1/private/ jessie-staging/main libxt-dev armhf 1:1.1.4-1 [447 kB]
Get:269 http://172.17.0.1/private/ jessie-staging/main mpack armhf 1.6-8 [38.4 kB]
Get:270 http://172.17.0.1/private/ jessie-staging/main tex-common all 5.03 [625 kB]
Get:271 http://172.17.0.1/private/ jessie-staging/main preview-latex-style all 11.87-3+deb8u1 [318 kB]
Get:272 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.17-1 [58.5 kB]
Get:273 http://172.17.0.1/private/ jessie-staging/main tcl8.5-dev armhf 8.5.17-1 [647 kB]
Get:274 http://172.17.0.1/private/ jessie-staging/main texinfo armhf 5.2.0.dfsg.1-6 [955 kB]
Get:275 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:276 http://172.17.0.1/private/ jessie-staging/main texlive-binaries armhf 2014.20140926.35254-6 [5322 kB]
Get:277 http://172.17.0.1/private/ jessie-staging/main texlive-base all 2014.20141024-2+deb8u1 [17.7 MB]
Get:278 http://172.17.0.1/private/ jessie-staging/main texlive-latex-base all 2014.20141024-2+deb8u1 [858 kB]
Get:279 http://172.17.0.1/private/ jessie-staging/main texlive-extra-utils all 2014.20141024-1 [10.6 MB]
Get:280 http://172.17.0.1/private/ jessie-staging/main ttf-adf-universalis all 0.20090423-2 [221 kB]
Get:281 http://172.17.0.1/private/ jessie-staging/main ttf-adf-gillius all 0.20090423-2 [400 kB]
Get:282 http://172.17.0.1/private/ jessie-staging/main fonts-stix all 1.1.1-1 [588 kB]
Get:283 http://172.17.0.1/private/ jessie-staging/main ttf-adf-accanthis all 0.20090423-2 [401 kB]
Get:284 http://172.17.0.1/private/ jessie-staging/main texlive-fonts-extra all 2014.20141024-1 [204 MB]
Get:285 http://172.17.0.1/private/ jessie-staging/main texlive-fonts-recommended all 2014.20141024-2+deb8u1 [5654 kB]
Get:286 http://172.17.0.1/private/ jessie-staging/main texlive-generic-recommended all 2014.20141024-2+deb8u1 [2143 kB]
Get:287 http://172.17.0.1/private/ jessie-staging/main texlive-latex-recommended all 2014.20141024-2+deb8u1 [7630 kB]
Get:288 http://172.17.0.1/private/ jessie-staging/main texlive-pictures all 2014.20141024-2+deb8u1 [3039 kB]
Get:289 http://172.17.0.1/private/ jessie-staging/main texlive-latex-extra all 2014.20141024-1 [7604 kB]
Get:290 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.17-1 [106 kB]
Get:291 http://172.17.0.1/private/ jessie-staging/main tk8.5-dev armhf 8.5.17-1 [680 kB]
Get:292 http://172.17.0.1/private/ jessie-staging/main x11-xkb-utils armhf 7.7+1 [138 kB]
Get:293 http://172.17.0.1/private/ jessie-staging/main xauth armhf 1:1.0.9-1 [35.6 kB]
Get:294 http://172.17.0.1/private/ jessie-staging/main xfonts-encodings all 1:1.0.4-2 [574 kB]
Get:295 http://172.17.0.1/private/ jessie-staging/main xfonts-utils armhf 1:7.7+2 [68.8 kB]
Get:296 http://172.17.0.1/private/ jessie-staging/main xfonts-base all 1:1.0.3 [6181 kB]
Get:297 http://172.17.0.1/private/ jessie-staging/main xkb-data all 2.12-1 [597 kB]
Get:298 http://172.17.0.1/private/ jessie-staging/main xserver-common all 2:1.16.4-1 [1758 kB]
Get:299 http://172.17.0.1/private/ jessie-staging/main xvfb armhf 2:1.16.4-1 [2359 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 433 MB in 2min 27s (2940 kB/s)
(Reading database ... 12000 files and directories currently installed.)
Preparing to unpack .../libpcre3_2%3a8.35-3.3+deb8u4_armhf.deb ...
Unpacking libpcre3:armhf (2:8.35-3.3+deb8u4) over (2:8.35-3.3) ...
Setting up libpcre3:armhf (2:8.35-3.3+deb8u4) ...
Processing triggers for libc-bin (2.19-18+deb8u1) ...
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 12000 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.4.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.0-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u6_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.1t-1+deb8u6) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.2-8_armhf.deb ...
Unpacking groff-base (1.22.2-8) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.0.2-5_armhf.deb ...
Unpacking man-db (2.7.0.2-5) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../bash-completion_1%3a2.1-4_all.deb ...
Unpacking bash-completion (1:2.1-4) ...
Selecting previously unselected package libasprintf0c2:armhf.
Preparing to unpack .../libasprintf0c2_0.19.3-2_armhf.deb ...
Unpacking libasprintf0c2:armhf (0.19.3-2) ...
Selecting previously unselected package libnettle4:armhf.
Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_armhf.deb ...
Unpacking libnettle4:armhf (2.7.1-5+deb8u2) ...
Selecting previously unselected package libhogweed2:armhf.
Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_armhf.deb ...
Unpacking libhogweed2:armhf (2.7.1-5+deb8u2) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.1-2_armhf.deb ...
Unpacking libffi6:armhf (3.1-2) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.20.7-1_armhf.deb ...
Unpacking libp11-kit0:armhf (0.20.7-1) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.2-3+deb8u2_armhf.deb ...
Unpacking libtasn1-6:armhf (4.2-3+deb8u2) ...
Selecting previously unselected package libgnutls-deb0-28:armhf.
Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u4_armhf.deb ...
Unpacking libgnutls-deb0-28:armhf (3.3.8-6+deb8u4) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-5_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-5) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.12.1+dfsg-19+deb8u2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.12.1+dfsg-19+deb8u2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.12.1+dfsg-19+deb8u2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.12.1+dfsg-19+deb8u2) ...
Selecting previously unselected package libidn11:armhf.
Preparing to unpack .../libidn11_1.29-1+deb8u2_armhf.deb ...
Unpacking libidn11:armhf (1.29-1+deb8u2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.22+15-2+deb8u3) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.7.1-1+deb8u2) ...
Selecting previously unselected package libwrap0:armhf.
Preparing to unpack .../libwrap0_7.6.q-25_armhf.deb ...
Unpacking libwrap0:armhf (7.6.q-25) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u4_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5+deb8u4) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.9-2+deb8u1) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_armhf.deb ...
Unpacking python2.7-minimal (2.7.9-2+deb8u1) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.9-1_armhf.deb ...
Unpacking python-minimal (2.7.9-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.58_all.deb ...
Unpacking mime-support (3.58) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-6+deb8u3_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-6+deb8u3) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.9-2+deb8u1) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.9-2+deb8u1_armhf.deb ...
Unpacking python2.7 (2.7.9-2+deb8u1) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.9-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.9-1) ...
Setting up libpython2.7-minimal:armhf (2.7.9-2+deb8u1) ...
Setting up python2.7-minimal (2.7.9-2+deb8u1) ...
Setting up python-minimal (2.7.9-1) ...
Selecting previously unselected package python.
(Reading database ... 14094 files and directories currently installed.)
Preparing to unpack .../python_2.7.9-1_armhf.deb ...
Unpacking python (2.7.9-1) ...
Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_armhf.deb ...
Unpacking libpng12-0:armhf (1.2.50-2+deb8u3) over (1.2.50-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../libfreetype6_2.5.2-3+deb8u1_armhf.deb ...
Unpacking libfreetype6:armhf (2.5.2-3+deb8u1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../archives/ucf_3.0030_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0030) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ...
Unpacking fonts-dejavu-core (2.34-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ...
Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_armhf.deb ...
Unpacking libfontconfig1:armhf (2.11.0-6.3+deb8u1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_armhf.deb ...
Unpacking fontconfig (2.11.0-6.3+deb8u1) ...
Selecting previously unselected package fonts-droid.
Preparing to unpack .../fonts-droid_1%3a4.4.4r2-6_all.deb ...
Unpacking fonts-droid (1:4.4.4r2-6) ...
Selecting previously unselected package fonts-lato.
Preparing to unpack .../fonts-lato_2.0-1_all.deb ...
Unpacking fonts-lato (2.0-1) ...
Selecting previously unselected package libasound2-data.
Preparing to unpack .../libasound2-data_1.0.28-1_all.deb ...
Unpacking libasound2-data (1.0.28-1) ...
Selecting previously unselected package libasound2:armhf.
Preparing to unpack .../libasound2_1.0.28-1_armhf.deb ...
Unpacking libasound2:armhf (1.0.28-1) ...
Selecting previously unselected package libasyncns0:armhf.
Preparing to unpack .../libasyncns0_0.8-5_armhf.deb ...
Unpacking libasyncns0:armhf (0.8-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.42.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.42.1-1) ...
Selecting previously unselected package libatk1.0-data.
Preparing to unpack .../libatk1.0-data_2.14.0-1_all.deb ...
Unpacking libatk1.0-data (2.14.0-1) ...
Selecting previously unselected package libatk1.0-0:armhf.
Preparing to unpack .../libatk1.0-0_2.14.0-1_armhf.deb ...
Unpacking libatk1.0-0:armhf (2.14.0-1) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../libpixman-1-0_0.32.6-3_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.32.6-3) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../libxdmcp6_1%3a1.1.1-1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.1-1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../libxcb1_1.10-3_armhf.deb ...
Unpacking libxcb1:armhf (1.10-3) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.2-3_all.deb ...
Unpacking libx11-data (2:1.6.2-3) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../libx11-6_2%3a1.6.2-3_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.2-3) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../libxcb-render0_1.10-3_armhf.deb ...
Unpacking libxcb-render0:armhf (1.10-3) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../libxcb-shm0_1.10-3_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.10-3) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../libxext6_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../libxrender1_1%3a0.9.8-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.8-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../libcairo2_1.14.0-2.1+deb8u2_armhf.deb ...
Unpacking libcairo2:armhf (1.14.0-2.1+deb8u2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.3.1-12) ...
Selecting previously unselected package libjasper1:armhf.
Preparing to unpack .../libjasper1_1.900.1-debian1-2.4+deb8u2_armhf.deb ...
Unpacking libjasper1:armhf (1.900.1-debian1-2.4+deb8u2) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u2_armhf.deb ...
Unpacking libtiff5:armhf (4.0.3-12.3+deb8u2) ...
Selecting previously unselected package libgdk-pixbuf2.0-common.
Preparing to unpack .../libgdk-pixbuf2.0-common_2.31.1-2+deb8u5_all.deb ...
Unpacking libgdk-pixbuf2.0-common (2.31.1-2+deb8u5) ...
Selecting previously unselected package libgdk-pixbuf2.0-0:armhf.
Preparing to unpack .../libgdk-pixbuf2.0-0_2.31.1-2+deb8u5_armhf.deb ...
Unpacking libgdk-pixbuf2.0-0:armhf (2.31.1-2+deb8u5) ...
Selecting previously unselected package libgtk2.0-common.
Preparing to unpack .../libgtk2.0-common_2.24.25-3+deb8u1_all.deb ...
Unpacking libgtk2.0-common (2.24.25-3+deb8u1) ...
Selecting previously unselected package libavahi-common-data:armhf.
Preparing to unpack .../libavahi-common-data_0.6.31-5_armhf.deb ...
Unpacking libavahi-common-data:armhf (0.6.31-5) ...
Selecting previously unselected package libavahi-common3:armhf.
Preparing to unpack .../libavahi-common3_0.6.31-5_armhf.deb ...
Unpacking libavahi-common3:armhf (0.6.31-5) ...
Selecting previously unselected package libavahi-client3:armhf.
Preparing to unpack .../libavahi-client3_0.6.31-5_armhf.deb ...
Unpacking libavahi-client3:armhf (0.6.31-5) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../libcups2_1.7.5-11+deb8u1_armhf.deb ...
Unpacking libcups2:armhf (1.7.5-11+deb8u1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.21-1_all.deb ...
Unpacking libthai-data (0.1.21-1) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../libdatrie1_0.2.8-1_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.8-1) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../libthai0_0.1.21-1_armhf.deb ...
Unpacking libthai0:armhf (0.1.21-1) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../libpango-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../libgraphite2-3_1.3.6-1~deb8u1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.6-1~deb8u1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../libharfbuzz0b_0.9.35-2_armhf.deb ...
Unpacking libharfbuzz0b:armhf (0.9.35-2) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libxcomposite1:armhf.
Preparing to unpack .../libxcomposite1_1%3a0.4.4-1_armhf.deb ...
Unpacking libxcomposite1:armhf (1:0.4.4-1) ...
Selecting previously unselected package libxfixes3:armhf.
Preparing to unpack .../libxfixes3_1%3a5.0.1-2_armhf.deb ...
Unpacking libxfixes3:armhf (1:5.0.1-2) ...
Selecting previously unselected package libxcursor1:armhf.
Preparing to unpack .../libxcursor1_1%3a1.1.14-1_armhf.deb ...
Unpacking libxcursor1:armhf (1:1.1.14-1) ...
Selecting previously unselected package libxdamage1:armhf.
Preparing to unpack .../libxdamage1_1%3a1.1.4-2_armhf.deb ...
Unpacking libxdamage1:armhf (1:1.1.4-2) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../libxi6_2%3a1.7.4-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.7.4-1) ...
Selecting previously unselected package libxinerama1:armhf.
Preparing to unpack .../libxinerama1_2%3a1.1.3-1_armhf.deb ...
Unpacking libxinerama1:armhf (2:1.1.3-1) ...
Selecting previously unselected package libxrandr2:armhf.
Preparing to unpack .../libxrandr2_2%3a1.4.2-1_armhf.deb ...
Unpacking libxrandr2:armhf (2:1.4.2-1) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../shared-mime-info_1.3-1_armhf.deb ...
Unpacking shared-mime-info (1.3-1) ...
Selecting previously unselected package libgtk2.0-0:armhf.
Preparing to unpack .../libgtk2.0-0_2.24.25-3+deb8u1_armhf.deb ...
Unpacking libgtk2.0-0:armhf (2.24.25-3+deb8u1) ...
Selecting previously unselected package libatk-wrapper-java.
Preparing to unpack .../libatk-wrapper-java_0.30.5-1_all.deb ...
Unpacking libatk-wrapper-java (0.30.5-1) ...
Selecting previously unselected package libatk-wrapper-java-jni:armhf.
Preparing to unpack .../libatk-wrapper-java-jni_0.30.5-1_armhf.deb ...
Unpacking libatk-wrapper-java-jni:armhf (0.30.5-1) ...
Selecting previously unselected package libcairo-gobject2:armhf.
Preparing to unpack .../libcairo-gobject2_1.14.0-2.1+deb8u2_armhf.deb ...
Unpacking libcairo-gobject2:armhf (1.14.0-2.1+deb8u2) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../liblzo2-2_2.08-1.2_armhf.deb ...
Unpacking liblzo2-2:armhf (2.08-1.2) ...
Selecting previously unselected package libcairo-script-interpreter2:armhf.
Preparing to unpack .../libcairo-script-interpreter2_1.14.0-2.1+deb8u2_armhf.deb ...
Unpacking libcairo-script-interpreter2:armhf (1.14.0-2.1+deb8u2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libcupsimage2:armhf.
Preparing to unpack .../libcupsimage2_1.7.5-11+deb8u1_armhf.deb ...
Unpacking libcupsimage2:armhf (1.7.5-11+deb8u1) ...
Selecting previously unselected package libcupsfilters1:armhf.
Preparing to unpack .../libcupsfilters1_1.0.61-5+deb8u3_armhf.deb ...
Unpacking libcupsfilters1:armhf (1.0.61-5+deb8u3) ...
Selecting previously unselected package libelfg0:armhf.
Preparing to unpack .../libelfg0_0.8.13-5_armhf.deb ...
Unpacking libelfg0:armhf (0.8.13-5) ...
Selecting previously unselected package libogg0:armhf.
Preparing to unpack .../libogg0_1.3.2-1_armhf.deb ...
Unpacking libogg0:armhf (1.3.2-1) ...
Selecting previously unselected package libflac8:armhf.
Preparing to unpack .../libflac8_1.3.0-3_armhf.deb ...
Unpacking libflac8:armhf (1.3.0-3) ...
Selecting previously unselected package libfontenc1:armhf.
Preparing to unpack .../libfontenc1_1%3a1.1.2-1_armhf.deb ...
Unpacking libfontenc1:armhf (1:1.1.2-1) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_4.9.2-10_armhf.deb ...
Unpacking libgfortran3:armhf (4.9.2-10) ...
Selecting previously unselected package libgif4:armhf.
Preparing to unpack .../libgif4_4.1.6-11+deb8u1_armhf.deb ...
Unpacking libgif4:armhf (4.1.6-11+deb8u1) ...
Selecting previously unselected package libglapi-mesa:armhf.
Preparing to unpack .../libglapi-mesa_10.3.2-1+deb8u1_armhf.deb ...
Unpacking libglapi-mesa:armhf (10.3.2-1+deb8u1) ...
Selecting previously unselected package libx11-xcb1:armhf.
Preparing to unpack .../libx11-xcb1_2%3a1.6.2-3_armhf.deb ...
Unpacking libx11-xcb1:armhf (2:1.6.2-3) ...
Selecting previously unselected package libxcb-dri2-0:armhf.
Preparing to unpack .../libxcb-dri2-0_1.10-3_armhf.deb ...
Unpacking libxcb-dri2-0:armhf (1.10-3) ...
Selecting previously unselected package libxcb-dri3-0:armhf.
Preparing to unpack .../libxcb-dri3-0_1.10-3_armhf.deb ...
Unpacking libxcb-dri3-0:armhf (1.10-3) ...
Selecting previously unselected package libxcb-glx0:armhf.
Preparing to unpack .../libxcb-glx0_1.10-3_armhf.deb ...
Unpacking libxcb-glx0:armhf (1.10-3) ...
Selecting previously unselected package libxcb-present0:armhf.
Preparing to unpack .../libxcb-present0_1.10-3_armhf.deb ...
Unpacking libxcb-present0:armhf (1.10-3) ...
Selecting previously unselected package libxcb-sync1:armhf.
Preparing to unpack .../libxcb-sync1_1.10-3_armhf.deb ...
Unpacking libxcb-sync1:armhf (1.10-3) ...
Selecting previously unselected package libxshmfence1:armhf.
Preparing to unpack .../libxshmfence1_1.1-4+rpi1_armhf.deb ...
Unpacking libxshmfence1:armhf (1.1-4+rpi1) ...
Selecting previously unselected package libxxf86vm1:armhf.
Preparing to unpack .../libxxf86vm1_1%3a1.1.3-1_armhf.deb ...
Unpacking libxxf86vm1:armhf (1:1.1.3-1) ...
Selecting previously unselected package libgl1-mesa-glx:armhf.
Preparing to unpack .../libgl1-mesa-glx_10.3.2-1+deb8u1_armhf.deb ...
Unpacking libgl1-mesa-glx:armhf (10.3.2-1+deb8u1) ...
Selecting previously unselected package libharfbuzz-gobject0:armhf.
Preparing to unpack .../libharfbuzz-gobject0_0.9.35-2_armhf.deb ...
Unpacking libharfbuzz-gobject0:armhf (0.9.35-2) ...
Selecting previously unselected package libicu52:armhf.
Preparing to unpack .../libicu52_52.1-8+deb8u4_armhf.deb ...
Unpacking libicu52:armhf (52.1-8+deb8u4) ...
Selecting previously unselected package libharfbuzz-icu0:armhf.
Preparing to unpack .../libharfbuzz-icu0_0.9.35-2_armhf.deb ...
Unpacking libharfbuzz-icu0:armhf (0.9.35-2) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ...
Unpacking x11-common (1:7.7+7) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../libice6_2%3a1.0.9-1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-1) ...
Selecting previously unselected package libijs-0.35:armhf.
Preparing to unpack .../libijs-0.35_0.35-10_armhf.deb ...
Unpacking libijs-0.35:armhf (0.35-10) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../liblcms2-2_2.6-3+deb8u1_armhf.deb ...
Unpacking liblcms2-2:armhf (2.6-3+deb8u1) ...
Selecting previously unselected package libnspr4:armhf.
Preparing to unpack .../libnspr4_2%3a4.12-1+debu8u1_armhf.deb ...
Unpacking libnspr4:armhf (2:4.12-1+debu8u1) ...
Selecting previously unselected package libnss3:armhf.
Preparing to unpack .../libnss3_2%3a3.26-1+debu8u1_armhf.deb ...
Unpacking libnss3:armhf (2:3.26-1+debu8u1) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../libxft2_2.3.2-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-1) ...
Selecting previously unselected package libpangoxft-1.0-0:armhf.
Preparing to unpack .../libpangoxft-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpangoxft-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../libpaper1_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu4) ...
Selecting previously unselected package libpcrecpp0:armhf.
Preparing to unpack .../libpcrecpp0_2%3a8.35-3.3+deb8u4_armhf.deb ...
Unpacking libpcrecpp0:armhf (2:8.35-3.3+deb8u4) ...
Selecting previously unselected package libpcsclite1:armhf.
Preparing to unpack .../libpcsclite1_1.8.13-1+deb8u1_armhf.deb ...
Unpacking libpcsclite1:armhf (1.8.13-1+deb8u1) ...
Selecting previously unselected package libopenjpeg5:armhf.
Preparing to unpack .../libopenjpeg5_1%3a1.5.2-3_armhf.deb ...
Unpacking libopenjpeg5:armhf (1:1.5.2-3) ...
Selecting previously unselected package libpoppler46:armhf.
Preparing to unpack .../libpoppler46_0.26.5-2+deb8u1_armhf.deb ...
Unpacking libpoppler46:armhf (0.26.5-2+deb8u1) ...
Selecting previously unselected package libjson-c2:armhf.
Preparing to unpack .../libjson-c2_0.11-4_armhf.deb ...
Unpacking libjson-c2:armhf (0.11-4) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../libsm6_2%3a1.2.2-1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1) ...
Selecting previously unselected package libvorbis0a:armhf.
Preparing to unpack .../libvorbis0a_1.3.4-2_armhf.deb ...
Unpacking libvorbis0a:armhf (1.3.4-2) ...
Selecting previously unselected package libvorbisenc2:armhf.
Preparing to unpack .../libvorbisenc2_1.3.4-2_armhf.deb ...
Unpacking libvorbisenc2:armhf (1.3.4-2) ...
Selecting previously unselected package libsndfile1:armhf.
Preparing to unpack .../libsndfile1_1.0.25-9.1+deb8u1_armhf.deb ...
Unpacking libsndfile1:armhf (1.0.25-9.1+deb8u1) ...
Selecting previously unselected package libxtst6:armhf.
Preparing to unpack .../libxtst6_2%3a1.2.2-1_armhf.deb ...
Unpacking libxtst6:armhf (2:1.2.2-1) ...
Selecting previously unselected package libpulse0:armhf.
Preparing to unpack .../libpulse0_5.0-13_armhf.deb ...
Unpacking libpulse0:armhf (5.0-13) ...
Selecting previously unselected package libsctp1:armhf.
Preparing to unpack .../libsctp1_1.0.16+dfsg-2_armhf.deb ...
Unpacking libsctp1:armhf (1.0.16+dfsg-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-4_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-4) ...
Preparing to unpack .../tzdata_2016j-0+deb8u1_all.deb ...
Unpacking tzdata (2016j-0+deb8u1) over (2015f-0+deb8u1) ...
Processing triggers for systemd (215-17+deb8u2) ...
Setting up tzdata (2016j-0+deb8u1) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sun Mar 19 16:26:22 UTC 2017.
Universal Time is now:  Sun Mar 19 16:26:22 UTC 2017.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Selecting previously unselected package libtcl8.5:armhf.
(Reading database ... 16186 files and directories currently installed.)
Preparing to unpack .../libtcl8.5_8.5.17-1_armhf.deb ...
Unpacking libtcl8.5:armhf (8.5.17-1) ...
Selecting previously unselected package libtiffxx5:armhf.
Preparing to unpack .../libtiffxx5_4.0.3-12.3+deb8u2_armhf.deb ...
Unpacking libtiffxx5:armhf (4.0.3-12.3+deb8u2) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../libxss1_1%3a1.2.2-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.2-1) ...
Selecting previously unselected package libtk8.5:armhf.
Preparing to unpack .../libtk8.5_8.5.17-1_armhf.deb ...
Unpacking libtk8.5:armhf (8.5.17-1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../libxt6_1%3a1.1.4-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.4-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../libxmu6_2%3a1.1.2-1_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.2-1) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../libxpm4_1%3a3.5.12-0+deb8u1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.12-0+deb8u1) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../libxaw7_2%3a1.0.12-2_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.12-2) ...
Selecting previously unselected package libxfont1:armhf.
Preparing to unpack .../libxfont1_1%3a1.5.1-1_armhf.deb ...
Unpacking libxfont1:armhf (1:1.5.1-1) ...
Selecting previously unselected package libxkbfile1:armhf.
Preparing to unpack .../libxkbfile1_1%3a1.0.8-1_armhf.deb ...
Unpacking libxkbfile1:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../libxmuu1_2%3a1.1.2-1_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../libzzip-0-13_0.13.62-3_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.62-3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../openssl_1.0.1t-1+deb8u6_armhf.deb ...
Unpacking openssl (1.0.1t-1+deb8u6) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../ca-certificates_20141019+deb8u2_all.deb ...
Unpacking ca-certificates (20141019+deb8u2) ...
Selecting previously unselected package java-common.
Preparing to unpack .../java-common_0.52_all.deb ...
Unpacking java-common (0.52) ...
Selecting previously unselected package default-jre-headless.
Preparing to unpack .../default-jre-headless_2%3a1.7-52_armhf.deb ...
Unpacking default-jre-headless (2:1.7-52) ...
Selecting previously unselected package ca-certificates-java.
Preparing to unpack .../ca-certificates-java_20140324_all.deb ...
Unpacking ca-certificates-java (20140324) ...
Selecting previously unselected package tzdata-java.
Preparing to unpack .../tzdata-java_2016j-0+deb8u1_all.deb ...
Unpacking tzdata-java (2016j-0+deb8u1) ...
Selecting previously unselected package openjdk-7-jre-headless:armhf.
Preparing to unpack .../openjdk-7-jre-headless_7u121-2.6.8-2~deb8u1+rpi1_armhf.deb ...
Unpacking openjdk-7-jre-headless:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
Selecting previously unselected package poppler-data.
Preparing to unpack .../poppler-data_0.4.7-1_all.deb ...
Unpacking poppler-data (0.4.7-1) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.22+15-2+deb8u3_armhf.deb ...
Unpacking file (1:5.22+15-2+deb8u3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.3-2_armhf.deb ...
Unpacking gettext-base (0.19.3-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-4_armhf.deb ...
Unpacking m4 (1.4.17-4) ...
Selecting previously unselected package libbison-dev:armhf.
Preparing to unpack .../libbison-dev_2%3a3.0.2.dfsg-2_armhf.deb ...
Unpacking libbison-dev:armhf (2:3.0.2.dfsg-2) ...
Selecting previously unselected package bison.
Preparing to unpack .../bison_2%3a3.0.2.dfsg-2_armhf.deb ...
Unpacking bison (2:3.0.2.dfsg-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.3-2_armhf.deb ...
Unpacking gettext (0.19.3-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.1) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ...
Unpacking po-debconf (1.0.16+nmu3) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150101+deb8u2_all.deb ...
Unpacking debhelper (9.20150101+deb8u2) ...
Selecting previously unselected package openjdk-7-jre:armhf.
Preparing to unpack .../openjdk-7-jre_7u121-2.6.8-2~deb8u1+rpi1_armhf.deb ...
Unpacking openjdk-7-jre:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
Selecting previously unselected package default-jre.
Preparing to unpack .../default-jre_2%3a1.7-52_armhf.deb ...
Unpacking default-jre (2:1.7-52) ...
Selecting previously unselected package openjdk-7-jdk:armhf.
Preparing to unpack .../openjdk-7-jdk_7u121-2.6.8-2~deb8u1+rpi1_armhf.deb ...
Unpacking openjdk-7-jdk:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
Selecting previously unselected package default-jdk.
Preparing to unpack .../default-jdk_2%3a1.7-52_armhf.deb ...
Unpacking default-jdk (2:1.7-52) ...
Selecting previously unselected package fonts-cabin.
Preparing to unpack .../fonts-cabin_1.5-2_all.deb ...
Unpacking fonts-cabin (1.5-2) ...
Selecting previously unselected package fonts-comfortaa.
Preparing to unpack .../fonts-comfortaa_2.003-1_all.deb ...
Unpacking fonts-comfortaa (2.003-1) ...
Selecting previously unselected package fonts-crosextra-caladea.
Preparing to unpack .../fonts-crosextra-caladea_20130214-1_all.deb ...
Unpacking fonts-crosextra-caladea (20130214-1) ...
Selecting previously unselected package fonts-crosextra-carlito.
Preparing to unpack .../fonts-crosextra-carlito_20130920-1_all.deb ...
Unpacking fonts-crosextra-carlito (20130920-1) ...
Selecting previously unselected package fonts-dejavu-extra.
Preparing to unpack .../fonts-dejavu-extra_2.34-1_all.deb ...
Unpacking fonts-dejavu-extra (2.34-1) ...
Selecting previously unselected package fonts-ebgaramond.
Preparing to unpack .../fonts-ebgaramond_0.015+git20130628-3_all.deb ...
Unpacking fonts-ebgaramond (0.015+git20130628-3) ...
Selecting previously unselected package fonts-ebgaramond-extra.
Preparing to unpack .../fonts-ebgaramond-extra_0.015+git20130628-3_all.deb ...
Unpacking fonts-ebgaramond-extra (0.015+git20130628-3) ...
Selecting previously unselected package fonts-font-awesome.
Preparing to unpack .../fonts-font-awesome_4.2.0~dfsg-1_all.deb ...
Unpacking fonts-font-awesome (4.2.0~dfsg-1) ...
Selecting previously unselected package fonts-freefont-otf.
Preparing to unpack .../fonts-freefont-otf_20120503-4_all.deb ...
Unpacking fonts-freefont-otf (20120503-4) ...
Selecting previously unselected package fonts-freefont-ttf.
Preparing to unpack .../fonts-freefont-ttf_20120503-4_all.deb ...
Unpacking fonts-freefont-ttf (20120503-4) ...
Selecting previously unselected package fonts-gfs-artemisia.
Preparing to unpack .../fonts-gfs-artemisia_1.1-5_all.deb ...
Unpacking fonts-gfs-artemisia (1.1-5) ...
Selecting previously unselected package fonts-gfs-complutum.
Preparing to unpack .../fonts-gfs-complutum_1.1-6_all.deb ...
Unpacking fonts-gfs-complutum (1.1-6) ...
Selecting previously unselected package fonts-gfs-didot.
Preparing to unpack .../fonts-gfs-didot_1.1-6_all.deb ...
Unpacking fonts-gfs-didot (1.1-6) ...
Selecting previously unselected package fonts-gfs-neohellenic.
Preparing to unpack .../fonts-gfs-neohellenic_1.1-6_all.deb ...
Unpacking fonts-gfs-neohellenic (1.1-6) ...
Selecting previously unselected package fonts-gfs-olga.
Preparing to unpack .../fonts-gfs-olga_1.1-5_all.deb ...
Unpacking fonts-gfs-olga (1.1-5) ...
Selecting previously unselected package fonts-gfs-solomos.
Preparing to unpack .../fonts-gfs-solomos_1.1-5_all.deb ...
Unpacking fonts-gfs-solomos (1.1-5) ...
Selecting previously unselected package fonts-inconsolata.
Preparing to unpack .../fonts-inconsolata_001.010-5_all.deb ...
Unpacking fonts-inconsolata (001.010-5) ...
Selecting previously unselected package fonts-junicode.
Preparing to unpack .../fonts-junicode_0.7.8-2_all.deb ...
Unpacking fonts-junicode (0.7.8-2) ...
Selecting previously unselected package fonts-linuxlibertine.
Preparing to unpack .../fonts-linuxlibertine_5.3.0-2_all.deb ...
Unpacking fonts-linuxlibertine (5.3.0-2) ...
Selecting previously unselected package fonts-lobster.
Preparing to unpack .../fonts-lobster_2.0-2_all.deb ...
Unpacking fonts-lobster (2.0-2) ...
Selecting previously unselected package fonts-lobstertwo.
Preparing to unpack .../fonts-lobstertwo_2.0-2_all.deb ...
Unpacking fonts-lobstertwo (2.0-2) ...
Selecting previously unselected package fonts-oflb-asana-math.
Preparing to unpack .../fonts-oflb-asana-math_000.907-6_all.deb ...
Unpacking fonts-oflb-asana-math (000.907-6) ...
Selecting previously unselected package fonts-sil-gentium.
Preparing to unpack .../fonts-sil-gentium_20081126%3a1.02-13_all.deb ...
Unpacking fonts-sil-gentium (20081126:1.02-13) ...
Selecting previously unselected package fonts-sil-gentium-basic.
Preparing to unpack .../fonts-sil-gentium-basic_1.1-7_all.deb ...
Unpacking fonts-sil-gentium-basic (1.1-7) ...
Selecting previously unselected package libgfortran-4.9-dev:armhf.
Preparing to unpack .../libgfortran-4.9-dev_4.9.2-10_armhf.deb ...
Unpacking libgfortran-4.9-dev:armhf (4.9.2-10) ...
Selecting previously unselected package gfortran-4.9.
Preparing to unpack .../gfortran-4.9_4.9.2-10_armhf.deb ...
Unpacking gfortran-4.9 (4.9.2-10) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a4.9.2-2_armhf.deb ...
Unpacking gfortran (4:4.9.2-2) ...
Selecting previously unselected package libgirepository-1.0-1:armhf.
Preparing to unpack .../libgirepository-1.0-1_1.42.0-2.2_armhf.deb ...
Unpacking libgirepository-1.0-1:armhf (1.42.0-2.2) ...
Selecting previously unselected package gir1.2-glib-2.0:armhf.
Preparing to unpack .../gir1.2-glib-2.0_1.42.0-2.2_armhf.deb ...
Unpacking gir1.2-glib-2.0:armhf (1.42.0-2.2) ...
Selecting previously unselected package gir1.2-freedesktop:armhf.
Preparing to unpack .../gir1.2-freedesktop_1.42.0-2.2_armhf.deb ...
Unpacking gir1.2-freedesktop:armhf (1.42.0-2.2) ...
Selecting previously unselected package gir1.2-pango-1.0:armhf.
Preparing to unpack .../gir1.2-pango-1.0_1.36.8-3_armhf.deb ...
Unpacking gir1.2-pango-1.0:armhf (1.36.8-3) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_1.2.20110419-10_armhf.deb ...
Unpacking libblas-common (1.2.20110419-10) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_1.2.20110419-10_armhf.deb ...
Unpacking libblas3 (1.2.20110419-10) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_1.2.20110419-10_armhf.deb ...
Unpacking libblas-dev (1.2.20110419-10) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../libbz2-dev_1.0.6-7_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-7) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../libexpat1-dev_2.1.0-6+deb8u3_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.1.0-6+deb8u3) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Selecting previously unselected package libpng12-dev:armhf.
Preparing to unpack .../libpng12-dev_1.2.50-2+deb8u3_armhf.deb ...
Unpacking libpng12-dev:armhf (1.2.50-2+deb8u3) ...
Selecting previously unselected package libfreetype6-dev.
Preparing to unpack .../libfreetype6-dev_2.5.2-3+deb8u1_armhf.deb ...
Unpacking libfreetype6-dev (2.5.2-3+deb8u1) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../pkg-config_0.28-1_armhf.deb ...
Unpacking pkg-config (0.28-1) ...
Selecting previously unselected package libfontconfig1-dev:armhf.
Preparing to unpack .../libfontconfig1-dev_2.11.0-6.3+deb8u1_armhf.deb ...
Unpacking libfontconfig1-dev:armhf (2.11.0-6.3+deb8u1) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../xorg-sgml-doctools_1%3a1.11-1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1) ...
Selecting previously unselected package x11proto-core-dev.
Preparing to unpack .../x11proto-core-dev_7.0.26-1_all.deb ...
Unpacking x11proto-core-dev (7.0.26-1) ...
Selecting previously unselected package libxau-dev:armhf.
Preparing to unpack .../libxau-dev_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau-dev:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp-dev:armhf.
Preparing to unpack .../libxdmcp-dev_1%3a1.1.1-1_armhf.deb ...
Unpacking libxdmcp-dev:armhf (1:1.1.1-1) ...
Selecting previously unselected package x11proto-input-dev.
Preparing to unpack .../x11proto-input-dev_2.3.1-1_all.deb ...
Unpacking x11proto-input-dev (2.3.1-1) ...
Selecting previously unselected package x11proto-kb-dev.
Preparing to unpack .../x11proto-kb-dev_1.0.6-2_all.deb ...
Unpacking x11proto-kb-dev (1.0.6-2) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../xtrans-dev_1.3.4-1_all.deb ...
Unpacking xtrans-dev (1.3.4-1) ...
Selecting previously unselected package libpthread-stubs0-dev:armhf.
Preparing to unpack .../libpthread-stubs0-dev_0.3-4_armhf.deb ...
Unpacking libpthread-stubs0-dev:armhf (0.3-4) ...
Selecting previously unselected package libxcb1-dev:armhf.
Preparing to unpack .../libxcb1-dev_1.10-3_armhf.deb ...
Unpacking libxcb1-dev:armhf (1.10-3) ...
Selecting previously unselected package libx11-dev:armhf.
Preparing to unpack .../libx11-dev_2%3a1.6.2-3_armhf.deb ...
Unpacking libx11-dev:armhf (2:1.6.2-3) ...
Selecting previously unselected package x11proto-render-dev.
Preparing to unpack .../x11proto-render-dev_2%3a0.11.1-2_all.deb ...
Unpacking x11proto-render-dev (2:0.11.1-2) ...
Selecting previously unselected package libxrender-dev:armhf.
Preparing to unpack .../libxrender-dev_1%3a0.9.8-1_armhf.deb ...
Unpacking libxrender-dev:armhf (1:0.9.8-1) ...
Selecting previously unselected package x11proto-xext-dev.
Preparing to unpack .../x11proto-xext-dev_7.3.0-1_all.deb ...
Unpacking x11proto-xext-dev (7.3.0-1) ...
Selecting previously unselected package libxext-dev:armhf.
Preparing to unpack .../libxext-dev_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext-dev:armhf (2:1.3.3-1) ...
Selecting previously unselected package libice-dev:armhf.
Preparing to unpack .../libice-dev_2%3a1.0.9-1_armhf.deb ...
Unpacking libice-dev:armhf (2:1.0.9-1) ...
Selecting previously unselected package libsm-dev:armhf.
Preparing to unpack .../libsm-dev_2%3a1.2.2-1_armhf.deb ...
Unpacking libsm-dev:armhf (2:1.2.2-1) ...
Selecting previously unselected package libpixman-1-dev.
Preparing to unpack .../libpixman-1-dev_0.32.6-3_armhf.deb ...
Unpacking libpixman-1-dev (0.32.6-3) ...
Selecting previously unselected package libxcb-render0-dev:armhf.
Preparing to unpack .../libxcb-render0-dev_1.10-3_armhf.deb ...
Unpacking libxcb-render0-dev:armhf (1.10-3) ...
Selecting previously unselected package libxcb-shm0-dev:armhf.
Preparing to unpack .../libxcb-shm0-dev_1.10-3_armhf.deb ...
Unpacking libxcb-shm0-dev:armhf (1.10-3) ...
Selecting previously unselected package libglib2.0-data.
Preparing to unpack .../libglib2.0-data_2.42.1-1_all.deb ...
Unpacking libglib2.0-data (2.42.1-1) ...
Selecting previously unselected package libglib2.0-bin.
Preparing to unpack .../libglib2.0-bin_2.42.1-1_armhf.deb ...
Unpacking libglib2.0-bin (2.42.1-1) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../libpcre3-dev_2%3a8.35-3.3+deb8u4_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.35-3.3+deb8u4) ...
Selecting previously unselected package libglib2.0-dev.
Preparing to unpack .../libglib2.0-dev_2.42.1-1_armhf.deb ...
Unpacking libglib2.0-dev (2.42.1-1) ...
Selecting previously unselected package libcairo2-dev.
Preparing to unpack .../libcairo2-dev_1.14.0-2.1+deb8u2_armhf.deb ...
Unpacking libcairo2-dev (1.14.0-2.1+deb8u2) ...
Selecting previously unselected package libjbig2dec0.
Preparing to unpack .../libjbig2dec0_0.11+20120125-1_armhf.deb ...
Unpacking libjbig2dec0 (0.11+20120125-1) ...
Selecting previously unselected package libgs9-common.
Preparing to unpack .../libgs9-common_9.06~dfsg-2+deb8u4_all.deb ...
Unpacking libgs9-common (9.06~dfsg-2+deb8u4) ...
Selecting previously unselected package libgs9.
Preparing to unpack .../libgs9_9.06~dfsg-2+deb8u4_armhf.deb ...
Unpacking libgs9 (9.06~dfsg-2+deb8u4) ...
Selecting previously unselected package libharfbuzz-dev.
Preparing to unpack .../libharfbuzz-dev_0.9.35-2_armhf.deb ...
Unpacking libharfbuzz-dev (0.9.35-2) ...
Selecting previously unselected package libintl-perl.
Preparing to unpack .../libintl-perl_1.23-1+deb8u1_all.deb ...
Unpacking libintl-perl (1.23-1+deb8u1) ...
Selecting previously unselected package libjbig-dev:armhf.
Preparing to unpack .../libjbig-dev_2.1-3.1_armhf.deb ...
Unpacking libjbig-dev:armhf (2.1-3.1) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.3.1-12_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.3.1-12) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../libjpeg-dev_1%3a1.3.1-12_all.deb ...
Unpacking libjpeg-dev (1:1.3.1-12) ...
Selecting previously unselected package libkpathsea6.
Preparing to unpack .../libkpathsea6_2014.20140926.35254-6_armhf.deb ...
Unpacking libkpathsea6 (2014.20140926.35254-6) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.5.0-4_armhf.deb ...
Unpacking liblapack3 (3.5.0-4) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.5.0-4_armhf.deb ...
Unpacking liblapack-dev (3.5.0-4) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2_armhf.deb ...
Unpacking liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../libtinfo-dev_5.9+20140913-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (5.9+20140913-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../libncurses5-dev_5.9+20140913-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (5.9+20140913-1) ...
Selecting previously unselected package libxft-dev.
Preparing to unpack .../libxft-dev_2.3.2-1_armhf.deb ...
Unpacking libxft-dev (2.3.2-1) ...
Selecting previously unselected package libpango1.0-dev.
Preparing to unpack .../libpango1.0-dev_1.36.8-3_armhf.deb ...
Unpacking libpango1.0-dev (1.36.8-3) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package libpotrace0.
Preparing to unpack .../libpotrace0_1.12-1+deb8u1_armhf.deb ...
Unpacking libpotrace0 (1.12-1+deb8u1) ...
Selecting previously unselected package libptexenc1.
Preparing to unpack .../libptexenc1_2014.20140926.35254-6_armhf.deb ...
Unpacking libptexenc1 (2014.20140926.35254-6) ...
Selecting previously unselected package libreadline6-dev:armhf.
Preparing to unpack .../libreadline6-dev_6.3-8_armhf.deb ...
Unpacking libreadline6-dev:armhf (6.3-8) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../libreadline-dev_6.3-8_armhf.deb ...
Unpacking libreadline-dev:armhf (6.3-8) ...
Selecting previously unselected package libsynctex1.
Preparing to unpack .../libsynctex1_2014.20140926.35254-6_armhf.deb ...
Unpacking libsynctex1 (2014.20140926.35254-6) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../libtext-unidecode-perl_1.22-1_all.deb ...
Unpacking libtext-unidecode-perl (1.22-1) ...
Selecting previously unselected package libtiff5-dev:armhf.
Preparing to unpack .../libtiff5-dev_4.0.3-12.3+deb8u2_armhf.deb ...
Unpacking libtiff5-dev:armhf (4.0.3-12.3+deb8u2) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ...
Unpacking libxml-namespacesupport-perl (1.11-1) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ...
Unpacking libxml-sax-base-perl (1.07-1) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ...
Unpacking libxml-sax-perl (0.99+dfsg-2) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../libxml-libxml-perl_2.0116+dfsg-1+deb8u1_armhf.deb ...
Unpacking libxml-libxml-perl (2.0116+dfsg-1+deb8u1) ...
Selecting previously unselected package x11proto-scrnsaver-dev.
Preparing to unpack .../x11proto-scrnsaver-dev_1.2.2-1_all.deb ...
Unpacking x11proto-scrnsaver-dev (1.2.2-1) ...
Selecting previously unselected package libxss-dev:armhf.
Preparing to unpack .../libxss-dev_1%3a1.2.2-1_armhf.deb ...
Unpacking libxss-dev:armhf (1:1.2.2-1) ...
Selecting previously unselected package libxt-dev:armhf.
Preparing to unpack .../libxt-dev_1%3a1.1.4-1_armhf.deb ...
Unpacking libxt-dev:armhf (1:1.1.4-1) ...
Selecting previously unselected package mpack.
Preparing to unpack .../archives/mpack_1.6-8_armhf.deb ...
Unpacking mpack (1.6-8) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../tex-common_5.03_all.deb ...
Unpacking tex-common (5.03) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../preview-latex-style_11.87-3+deb8u1_all.deb ...
Unpacking preview-latex-style (11.87-3+deb8u1) ...
Selecting previously unselected package tcl8.5.
Preparing to unpack .../tcl8.5_8.5.17-1_armhf.deb ...
Unpacking tcl8.5 (8.5.17-1) ...
Selecting previously unselected package tcl8.5-dev:armhf.
Preparing to unpack .../tcl8.5-dev_8.5.17-1_armhf.deb ...
Unpacking tcl8.5-dev:armhf (8.5.17-1) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../texinfo_5.2.0.dfsg.1-6_armhf.deb ...
Unpacking texinfo (5.2.0.dfsg.1-6) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../xdg-utils_1.1.0~rc1+git20111210-7.4_all.deb ...
Unpacking xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../texlive-binaries_2014.20140926.35254-6_armhf.deb ...
Unpacking texlive-binaries (2014.20140926.35254-6) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../texlive-base_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-base (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../texlive-latex-base_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-latex-base (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-extra-utils.
Preparing to unpack .../texlive-extra-utils_2014.20141024-1_all.deb ...
Unpacking texlive-extra-utils (2014.20141024-1) ...
Selecting previously unselected package ttf-adf-universalis.
Preparing to unpack .../ttf-adf-universalis_0.20090423-2_all.deb ...
Unpacking ttf-adf-universalis (0.20090423-2) ...
Selecting previously unselected package ttf-adf-gillius.
Preparing to unpack .../ttf-adf-gillius_0.20090423-2_all.deb ...
Unpacking ttf-adf-gillius (0.20090423-2) ...
Selecting previously unselected package fonts-stix.
Preparing to unpack .../fonts-stix_1.1.1-1_all.deb ...
Unpacking fonts-stix (1.1.1-1) ...
Selecting previously unselected package ttf-adf-accanthis.
Preparing to unpack .../ttf-adf-accanthis_0.20090423-2_all.deb ...
Unpacking ttf-adf-accanthis (0.20090423-2) ...
Selecting previously unselected package texlive-fonts-extra.
Preparing to unpack .../texlive-fonts-extra_2014.20141024-1_all.deb ...
Unpacking texlive-fonts-extra (2014.20141024-1) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../texlive-fonts-recommended_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-fonts-recommended (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-generic-recommended.
Preparing to unpack .../texlive-generic-recommended_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-generic-recommended (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../texlive-latex-recommended_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-latex-recommended (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../texlive-pictures_2014.20141024-2+deb8u1_all.deb ...
Unpacking texlive-pictures (2014.20141024-2+deb8u1) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../texlive-latex-extra_2014.20141024-1_all.deb ...
Unpacking texlive-latex-extra (2014.20141024-1) ...
Selecting previously unselected package tk8.5.
Preparing to unpack .../tk8.5_8.5.17-1_armhf.deb ...
Unpacking tk8.5 (8.5.17-1) ...
Selecting previously unselected package tk8.5-dev:armhf.
Preparing to unpack .../tk8.5-dev_8.5.17-1_armhf.deb ...
Unpacking tk8.5-dev:armhf (8.5.17-1) ...
Selecting previously unselected package x11-xkb-utils.
Preparing to unpack .../x11-xkb-utils_7.7+1_armhf.deb ...
Unpacking x11-xkb-utils (7.7+1) ...
Selecting previously unselected package xauth.
Preparing to unpack .../xauth_1%3a1.0.9-1_armhf.deb ...
Unpacking xauth (1:1.0.9-1) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../xfonts-encodings_1%3a1.0.4-2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../xfonts-utils_1%3a7.7+2_armhf.deb ...
Unpacking xfonts-utils (1:7.7+2) ...
Selecting previously unselected package xfonts-base.
Preparing to unpack .../xfonts-base_1%3a1.0.3_all.deb ...
Unpacking xfonts-base (1:1.0.3) ...
Selecting previously unselected package xkb-data.
Preparing to unpack .../xkb-data_2.12-1_all.deb ...
Unpacking xkb-data (2.12-1) ...
Selecting previously unselected package xserver-common.
Preparing to unpack .../xserver-common_2%3a1.16.4-1_all.deb ...
Unpacking xserver-common (2:1.16.4-1) ...
Selecting previously unselected package xvfb.
Preparing to unpack .../xvfb_2%3a1.16.4-1_armhf.deb ...
Unpacking xvfb (2:1.16.4-1) ...
Selecting previously unselected package sbuild-build-depends-r-base-dummy.
Preparing to unpack .../sbuild-build-depends-r-base-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up libssl1.0.0:armhf (1.0.1t-1+deb8u6) ...
Setting up groff-base (1.22.2-8) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up bash-completion (1:2.1-4) ...
Setting up libasprintf0c2:armhf (0.19.3-2) ...
Setting up libnettle4:armhf (2.7.1-5+deb8u2) ...
Setting up libhogweed2:armhf (2.7.1-5+deb8u2) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libp11-kit0:armhf (0.20.7-1) ...
Setting up libtasn1-6:armhf (4.2-3+deb8u2) ...
Setting up libgnutls-deb0-28:armhf (3.3.8-6+deb8u4) ...
Setting up libkeyutils1:armhf (1.5.9-5) ...
Setting up libkrb5support0:armhf (1.12.1+dfsg-19+deb8u2) ...
Setting up libk5crypto3:armhf (1.12.1+dfsg-19+deb8u2) ...
Setting up libkrb5-3:armhf (1.12.1+dfsg-19+deb8u2) ...
Setting up libgssapi-krb5-2:armhf (1.12.1+dfsg-19+deb8u2) ...
Setting up libidn11:armhf (1.29-1+deb8u2) ...
Setting up libmagic1:armhf (1:5.22+15-2+deb8u3) ...
Setting up libsqlite3-0:armhf (3.8.7.1-1+deb8u2) ...
Setting up libwrap0:armhf (7.6.q-25) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5+deb8u4) ...
Setting up mime-support (3.58) ...
Setting up libexpat1:armhf (2.1.0-6+deb8u3) ...
Setting up libpython2.7-stdlib:armhf (2.7.9-2+deb8u1) ...
Setting up python2.7 (2.7.9-2+deb8u1) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libpng12-0:armhf (1.2.50-2+deb8u3) ...
Setting up libfreetype6:armhf (2.5.2-3+deb8u1) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.34-1) ...
Setting up fontconfig-config (2.11.0-6.3+deb8u1) ...
Setting up libfontconfig1:armhf (2.11.0-6.3+deb8u1) ...
Setting up fontconfig (2.11.0-6.3+deb8u1) ...
Regenerating fonts cache... done.
Setting up fonts-droid (1:4.4.4r2-6) ...
Setting up fonts-lato (2.0-1) ...
Setting up libasound2-data (1.0.28-1) ...
Setting up libasound2:armhf (1.0.28-1) ...
Setting up libasyncns0:armhf (0.8-5) ...
Setting up libglib2.0-0:armhf (2.42.1-1) ...
No schema files found: doing nothing.
Setting up libatk1.0-data (2.14.0-1) ...
Setting up libatk1.0-0:armhf (2.14.0-1) ...
Setting up libpixman-1-0:armhf (0.32.6-3) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
Setting up libxcb1:armhf (1.10-3) ...
Setting up libx11-data (2:1.6.2-3) ...
Setting up libx11-6:armhf (2:1.6.2-3) ...
Setting up libxcb-render0:armhf (1.10-3) ...
Setting up libxcb-shm0:armhf (1.10-3) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.14.0-2.1+deb8u2) ...
Setting up libjpeg62-turbo:armhf (1:1.3.1-12) ...
Setting up libjasper1:armhf (1.900.1-debian1-2.4+deb8u2) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libtiff5:armhf (4.0.3-12.3+deb8u2) ...
Setting up libgdk-pixbuf2.0-common (2.31.1-2+deb8u5) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.31.1-2+deb8u5) ...
Setting up libgtk2.0-common (2.24.25-3+deb8u1) ...
Setting up libavahi-common-data:armhf (0.6.31-5) ...
Setting up libavahi-common3:armhf (0.6.31-5) ...
Setting up libavahi-client3:armhf (0.6.31-5) ...
Setting up libcups2:armhf (1.7.5-11+deb8u1) ...
Setting up libthai-data (0.1.21-1) ...
Setting up libdatrie1:armhf (0.2.8-1) ...
Setting up libthai0:armhf (0.1.21-1) ...
Setting up libpango-1.0-0:armhf (1.36.8-3) ...
Setting up libgraphite2-3:armhf (1.3.6-1~deb8u1) ...
Setting up libharfbuzz0b:armhf (0.9.35-2) ...
Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ...
Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
Setting up libxcomposite1:armhf (1:0.4.4-1) ...
Setting up libxfixes3:armhf (1:5.0.1-2) ...
Setting up libxcursor1:armhf (1:1.1.14-1) ...
Setting up libxdamage1:armhf (1:1.1.4-2) ...
Setting up libxi6:armhf (2:1.7.4-1) ...
Setting up libxinerama1:armhf (2:1.1.3-1) ...
Setting up libxrandr2:armhf (2:1.4.2-1) ...
Setting up shared-mime-info (1.3-1) ...
Setting up libgtk2.0-0:armhf (2.24.25-3+deb8u1) ...
Setting up libatk-wrapper-java (0.30.5-1) ...
Setting up libatk-wrapper-java-jni:armhf (0.30.5-1) ...
Setting up libcairo-gobject2:armhf (1.14.0-2.1+deb8u2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libcairo-script-interpreter2:armhf (1.14.0-2.1+deb8u2) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libelfg0:armhf (0.8.13-5) ...
Setting up libogg0:armhf (1.3.2-1) ...
Setting up libflac8:armhf (1.3.0-3) ...
Setting up libfontenc1:armhf (1:1.1.2-1) ...
Setting up libgfortran3:armhf (4.9.2-10) ...
Setting up libgif4:armhf (4.1.6-11+deb8u1) ...
Setting up libglapi-mesa:armhf (10.3.2-1+deb8u1) ...
Setting up libx11-xcb1:armhf (2:1.6.2-3) ...
Setting up libxcb-dri2-0:armhf (1.10-3) ...
Setting up libxcb-dri3-0:armhf (1.10-3) ...
Setting up libxcb-glx0:armhf (1.10-3) ...
Setting up libxcb-present0:armhf (1.10-3) ...
Setting up libxcb-sync1:armhf (1.10-3) ...
Setting up libxshmfence1:armhf (1.1-4+rpi1) ...
Setting up libxxf86vm1:armhf (1:1.1.3-1) ...
Setting up libgl1-mesa-glx:armhf (10.3.2-1+deb8u1) ...
Setting up libharfbuzz-gobject0:armhf (0.9.35-2) ...
Setting up libicu52:armhf (52.1-8+deb8u4) ...
Setting up libharfbuzz-icu0:armhf (0.9.35-2) ...
Setting up x11-common (1:7.7+7) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.9-1) ...
Setting up libijs-0.35:armhf (0.35-10) ...
Setting up liblcms2-2:armhf (2.6-3+deb8u1) ...
Setting up libnspr4:armhf (2:4.12-1+debu8u1) ...
Setting up libnss3:armhf (2:3.26-1+debu8u1) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up libpangoxft-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...

Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (2:8.35-3.3+deb8u4) ...
Setting up libpcsclite1:armhf (1.8.13-1+deb8u1) ...
Setting up libopenjpeg5:armhf (1:1.5.2-3) ...
Setting up libpoppler46:armhf (0.26.5-2+deb8u1) ...
Setting up libjson-c2:armhf (0.11-4) ...
Setting up libsm6:armhf (2:1.2.2-1) ...
Setting up libvorbis0a:armhf (1.3.4-2) ...
Setting up libvorbisenc2:armhf (1.3.4-2) ...
Setting up libsndfile1:armhf (1.0.25-9.1+deb8u1) ...
Setting up libxtst6:armhf (2:1.2.2-1) ...
Setting up libpulse0:armhf (5.0-13) ...
Setting up libsctp1:armhf (1.0.16+dfsg-2) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libtcl8.5:armhf (8.5.17-1) ...
Setting up libtiffxx5:armhf (4.0.3-12.3+deb8u2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.5:armhf (8.5.17-1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up libxmu6:armhf (2:1.1.2-1) ...
Setting up libxpm4:armhf (1:3.5.12-0+deb8u1) ...
Setting up libxaw7:armhf (2:1.0.12-2) ...
Setting up libxfont1:armhf (1:1.5.1-1) ...
Setting up libxkbfile1:armhf (1:1.0.8-1) ...
Setting up libxmuu1:armhf (2:1.1.2-1) ...
Setting up libzzip-0-13:armhf (0.13.62-3) ...
Setting up openssl (1.0.1t-1+deb8u6) ...
Setting up ca-certificates (20141019+deb8u2) ...
/usr/sbin/update-ca-certificates: [--verbose] [--fresh]
Setting up java-common (0.52) ...
Setting up tzdata-java (2016j-0+deb8u1) ...
Setting up poppler-data (0.4.7-1) ...
Setting up file (1:5.22+15-2+deb8u3) ...
Setting up gettext-base (0.19.3-2) ...
Setting up m4 (1.4.17-4) ...
Setting up libbison-dev:armhf (2:3.0.2.dfsg-2) ...
Setting up bison (2:3.0.2.dfsg-2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up gettext (0.19.3-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu3) ...
Setting up debhelper (9.20150101+deb8u2) ...
Setting up fonts-cabin (1.5-2) ...
Setting up fonts-comfortaa (2.003-1) ...
Setting up fonts-crosextra-caladea (20130214-1) ...
Setting up fonts-crosextra-carlito (20130920-1) ...
Setting up fonts-dejavu-extra (2.34-1) ...
Setting up fonts-ebgaramond (0.015+git20130628-3) ...
Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ...
Setting up fonts-font-awesome (4.2.0~dfsg-1) ...
Setting up fonts-freefont-otf (20120503-4) ...
Setting up fonts-freefont-ttf (20120503-4) ...
Setting up fonts-gfs-artemisia (1.1-5) ...
Setting up fonts-gfs-complutum (1.1-6) ...
Setting up fonts-gfs-didot (1.1-6) ...
Setting up fonts-gfs-neohellenic (1.1-6) ...
Setting up fonts-gfs-olga (1.1-5) ...
Setting up fonts-gfs-solomos (1.1-5) ...
Setting up fonts-inconsolata (001.010-5) ...
Setting up fonts-junicode (0.7.8-2) ...
Setting up fonts-linuxlibertine (5.3.0-2) ...
Setting up fonts-lobster (2.0-2) ...
Setting up fonts-lobstertwo (2.0-2) ...
Setting up fonts-oflb-asana-math (000.907-6) ...
Setting up fonts-sil-gentium (20081126:1.02-13) ...
Setting up fonts-sil-gentium-basic (1.1-7) ...
Setting up libgfortran-4.9-dev:armhf (4.9.2-10) ...
Setting up gfortran-4.9 (4.9.2-10) ...
Setting up gfortran (4:4.9.2-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libgirepository-1.0-1:armhf (1.42.0-2.2) ...
Setting up gir1.2-glib-2.0:armhf (1.42.0-2.2) ...
Setting up gir1.2-freedesktop:armhf (1.42.0-2.2) ...
Setting up gir1.2-pango-1.0:armhf (1.36.8-3) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-7) ...
Setting up libexpat1-dev:armhf (2.1.0-6+deb8u3) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libpng12-dev:armhf (1.2.50-2+deb8u3) ...
Setting up libfreetype6-dev (2.5.2-3+deb8u1) ...
Setting up pkg-config (0.28-1) ...
Setting up libfontconfig1-dev:armhf (2.11.0-6.3+deb8u1) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up x11proto-core-dev (7.0.26-1) ...
Setting up libxau-dev:armhf (1:1.0.8-1) ...
Setting up libxdmcp-dev:armhf (1:1.1.1-1) ...
Setting up x11proto-input-dev (2.3.1-1) ...
Setting up x11proto-kb-dev (1.0.6-2) ...
Setting up xtrans-dev (1.3.4-1) ...
Setting up libpthread-stubs0-dev:armhf (0.3-4) ...
Setting up libxcb1-dev:armhf (1.10-3) ...
Setting up libx11-dev:armhf (2:1.6.2-3) ...
Setting up x11proto-render-dev (2:0.11.1-2) ...
Setting up libxrender-dev:armhf (1:0.9.8-1) ...
Setting up x11proto-xext-dev (7.3.0-1) ...
Setting up libxext-dev:armhf (2:1.3.3-1) ...
Setting up libice-dev:armhf (2:1.0.9-1) ...
Setting up libsm-dev:armhf (2:1.2.2-1) ...
Setting up libpixman-1-dev (0.32.6-3) ...
Setting up libxcb-render0-dev:armhf (1.10-3) ...
Setting up libxcb-shm0-dev:armhf (1.10-3) ...
Setting up libglib2.0-data (2.42.1-1) ...
Setting up libglib2.0-bin (2.42.1-1) ...
Setting up libpcre3-dev:armhf (2:8.35-3.3+deb8u4) ...
Setting up libglib2.0-dev (2.42.1-1) ...
Setting up libcairo2-dev (1.14.0-2.1+deb8u2) ...
Setting up libjbig2dec0 (0.11+20120125-1) ...
Setting up libgs9-common (9.06~dfsg-2+deb8u4) ...
Setting up libharfbuzz-dev (0.9.35-2) ...
Setting up libintl-perl (1.23-1+deb8u1) ...
Setting up libjbig-dev:armhf (2.1-3.1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.3.1-12) ...
Setting up libjpeg-dev (1:1.3.1-12) ...
Setting up libkpathsea6 (2014.20140926.35254-6) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9+20140913-1) ...
Setting up libncurses5-dev:armhf (5.9+20140913-1) ...
Setting up libxft-dev (2.3.2-1) ...
Setting up libpango1.0-dev (1.36.8-3) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpotrace0 (1.12-1+deb8u1) ...
Setting up libptexenc1 (2014.20140926.35254-6) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up libsynctex1 (2014.20140926.35254-6) ...
Setting up libtext-unidecode-perl (1.22-1) ...
Setting up libtiff5-dev:armhf (4.0.3-12.3+deb8u2) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:armhf (1:1.2.2-1) ...
Setting up libxt-dev:armhf (1:1.1.4-1) ...
Setting up mpack (1.6-8) ...
Setting up tex-common (5.03) ...
Setting up preview-latex-style (11.87-3+deb8u1) ...
Setting up tcl8.5 (8.5.17-1) ...
Setting up tcl8.5-dev:armhf (8.5.17-1) ...
Setting up texinfo (5.2.0.dfsg.1-6) ...
Running mktexlsr. This may take some time. ... done.
Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Setting up ttf-adf-universalis (0.20090423-2) ...
Setting up ttf-adf-gillius (0.20090423-2) ...
Setting up fonts-stix (1.1.1-1) ...
Setting up ttf-adf-accanthis (0.20090423-2) ...
Setting up tk8.5 (8.5.17-1) ...
Setting up tk8.5-dev:armhf (8.5.17-1) ...
Setting up x11-xkb-utils (7.7+1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up xfonts-encodings (1:1.0.4-2) ...
Setting up xfonts-utils (1:7.7+2) ...
Setting up xfonts-base (1:1.0.3) ...
Setting up xkb-data (2.12-1) ...
Setting up xserver-common (2:1.16.4-1) ...
Setting up xvfb (2:1.16.4-1) ...
Setting up libcupsimage2:armhf (1.7.5-11+deb8u1) ...
Setting up libcupsfilters1:armhf (1.0.61-5+deb8u3) ...
Setting up ca-certificates-java (20140324) ...
done.
Setting up default-jre-headless (2:1.7-52) ...
Setting up libgs9 (9.06~dfsg-2+deb8u4) ...
Setting up texlive-binaries (2014.20140926.35254-6) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Building format(s) --refresh.
	This may take some time... done.
Setting up texlive-base (2014.20141024-2+deb8u1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Running mktexlsr. This may take some time... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for ca-certificates (20141019+deb8u2) ...
Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:ACCVRAIZ1.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CA_WoSign_ECC_Root.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certification_Authority_of_WoSign_G2.pem
Adding debian:Certigna.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certplus_Root_CA_G1.pem
Adding debian:Certplus_Root_CA_G2.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OpenTrust_Root_CA_G1.pem
Adding debian:OpenTrust_Root_CA_G2.pem
Adding debian:OpenTrust_Root_CA_G3.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:WoSign.pem
Adding debian:WoSign_China.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.
Setting up openjdk-7-jre-headless:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-7-jre:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52) ...
Setting up openjdk-7-jdk:armhf (7u121-2.6.8-2~deb8u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
Setting up default-jdk (2:1.7-52) ...
Processing triggers for tex-common (5.03) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-fonts-extra (2014.20141024-1) ...
Setting up texlive-fonts-recommended (2014.20141024-2+deb8u1) ...
Setting up texlive-generic-recommended (2014.20141024-2+deb8u1) ...
Setting up texlive-latex-base (2014.20141024-2+deb8u1) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-recommended (2014.20141024-2+deb8u1) ...
Setting up texlive-extra-utils (2014.20141024-1) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Setting up texlive-pictures (2014.20141024-2+deb8u1) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2014.20141024-1) ...
Processing triggers for tex-common (5.03) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18+deb8u1) ...
Processing triggers for systemd (215-17+deb8u2) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18+deb8u1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt11-1+deb8u4+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8.1 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 bash-completion_1:2.1-4 binutils_2.25-5 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 ca-certificates_20141019+deb8u2 ca-certificates-java_20140324 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150101+deb8u2 debianutils_4.4 default-jdk_2:1.7-52 default-jre_2:1.7-52 default-jre-headless_2:1.7-52 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2+deb8u3 findutils_4.4.2-9 fontconfig_2.11.0-6.3+deb8u1 fontconfig-config_2.11.0-6.3+deb8u1 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-crosextra-caladea_20130214-1 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.34-1 fonts-dejavu-extra_2.34-1 fonts-droid_1:4.4.4r2-6 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.2.0~dfsg-1 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_2.0-1 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-sil-gentium_20081126:1.02-13 fonts-sil-gentium-basic_1.1-7 fonts-stix_1.1.1-1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gfortran_4:4.9.2-2 gfortran-4.9_4.9.2-10 gir1.2-freedesktop_1.42.0-2.2 gir1.2-glib-2.0_1.42.0-2.2 gir1.2-pango-1.0_1.36.8-3 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.2-8 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.52 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8.1 libasan1_4.9.2-10 libasound2_1.0.28-1 libasound2-data_1.0.28-1 libasprintf0c2_0.19.3-2 libasyncns0_0.8-5 libatk-wrapper-java_0.30.5-1 libatk-wrapper-java-jni_0.30.5-1 libatk1.0-0_2.14.0-1 libatk1.0-data_2.14.0-1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libavahi-client3_0.6.31-5 libavahi-common-data_0.6.31-5 libavahi-common3_0.6.31-5 libbison-dev_2:3.0.2.dfsg-2 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libbz2-dev_1.0.6-7 libc-bin_2.19-18+deb8u1 libc-dev-bin_2.19-18+deb8u1 libc6_2.19-18+deb8u1 libc6-dev_2.19-18+deb8u1 libcairo-gobject2_1.14.0-2.1+deb8u2 libcairo-script-interpreter2_1.14.0-2.1+deb8u2 libcairo2_1.14.0-2.1+deb8u2 libcairo2-dev_1.14.0-2.1+deb8u2 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcups2_1.7.5-11+deb8u1 libcupsfilters1_1.0.61-5+deb8u3 libcupsimage2_1.7.5-11+deb8u1 libdatrie1_0.2.8-1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.20-0+deb8u1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libelfg0_0.8.13-5 libexpat1_2.1.0-6+deb8u3 libexpat1-dev_2.1.0-6+deb8u3 libfakeroot_1.20.2-1 libffi6_3.1-2 libflac8_1.3.0-3 libfontconfig1_2.11.0-6.3+deb8u1 libfontconfig1-dev_2.11.0-6.3+deb8u1 libfontenc1_1:1.1.2-1 libfreetype6_2.5.2-3+deb8u1 libfreetype6-dev_2.5.2-3+deb8u1 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.31.1-2+deb8u5 libgdk-pixbuf2.0-common_2.31.1-2+deb8u5 libgfortran-4.9-dev_4.9.2-10 libgfortran3_4.9.2-10 libgif4_4.1.6-11+deb8u1 libgirepository-1.0-1_1.42.0-2.2 libgl1-mesa-glx_10.3.2-1+deb8u1 libglapi-mesa_10.3.2-1+deb8u1 libglib2.0-0_2.42.1-1 libglib2.0-bin_2.42.1-1 libglib2.0-data_2.42.1-1 libglib2.0-dev_2.42.1-1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.8-6+deb8u4 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libgraphite2-3_1.3.6-1~deb8u1 libgs9_9.06~dfsg-2+deb8u4 libgs9-common_9.06~dfsg-2+deb8u4 libgssapi-krb5-2_1.12.1+dfsg-19+deb8u2 libgtk2.0-0_2.24.25-3+deb8u1 libgtk2.0-common_2.24.25-3+deb8u1 libharfbuzz-dev_0.9.35-2 libharfbuzz-gobject0_0.9.35-2 libharfbuzz-icu0_0.9.35-2 libharfbuzz0b_0.9.35-2 libhogweed2_2.7.1-5+deb8u2 libice-dev_2:1.0.9-1 libice6_2:1.0.9-1 libicu52_52.1-8+deb8u4 libidn11_1.29-1+deb8u2 libijs-0.35_0.35-10 libintl-perl_1.23-1+deb8u1 libisl10_0.12.2-2 libjasper1_1.900.1-debian1-2.4+deb8u2 libjbig-dev_2.1-3.1 libjbig0_2.1-3.1 libjbig2dec0_0.11+20120125-1 libjpeg-dev_1:1.3.1-12 libjpeg62-turbo_1:1.3.1-12 libjpeg62-turbo-dev_1:1.3.1-12 libjson-c2_0.11-4 libk5crypto3_1.12.1+dfsg-19+deb8u2 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkpathsea6_2014.20140926.35254-6 libkrb5-3_1.12.1+dfsg-19+deb8u2 libkrb5support0_1.12.1+dfsg-19+deb8u2 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 liblcms2-2_2.6-3+deb8u1 liblocale-gettext-perl_1.05-8+b1 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.08-1.2 libmagic1_1:5.22+15-2+deb8u3 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncurses5-dev_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnettle4_2.7.1-5+deb8u2 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libnspr4_2:4.12-1+debu8u1 libnss3_2:3.26-1+debu8u1 libogg0_1.3.2-1 libopenjpeg5_1:1.5.2-3 libp11-kit0_0.20.7-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpango1.0-dev_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpangoxft-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.35-3.3+deb8u4 libpcre3-dev_2:8.35-3.3+deb8u4 libpcrecpp0_2:8.35-3.3+deb8u4 libpcsclite1_1.8.13-1+deb8u1 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpixman-1-dev_0.32.6-3 libpng12-0_1.2.50-2+deb8u3 libpng12-dev_1.2.50-2+deb8u3 libpoppler46_0.26.5-2+deb8u1 libpotrace0_1.12-1+deb8u1 libprocps3_2:3.3.9-9 libptexenc1_2014.20140926.35254-6 libpthread-stubs0-dev_0.3-4 libpulse0_5.0-13 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.9-2+deb8u1 libpython2.7-stdlib_2.7.9-2+deb8u1 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 libsctp1_1.0.16+dfsg-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.25.2-6 libsndfile1_1.0.25-9.1+deb8u1 libsqlite3-0_3.8.7.1-1+deb8u2 libss2_1.42.12-1.1 libssl1.0.0_1.0.1t-1+deb8u6 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsynctex1_2014.20140926.35254-6 libsystemd0_215-17+deb8u2 libtasn1-6_4.2-3+deb8u2 libtcl8.5_8.5.17-1 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-unidecode-perl_1.22-1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.21-1 libthai0_0.1.21-1 libtiff5_4.0.3-12.3+deb8u2 libtiff5-dev_4.0.3-12.3+deb8u2 libtiffxx5_4.0.3-12.3+deb8u2 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140913-1 libtinfo5_5.9+20140913-1 libtk8.5_8.5.17-1 libubsan0_4.9.2-10 libudev1_215-17+deb8u2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libvorbis0a_1.3.4-2 libvorbisenc2_1.3.4-2 libwrap0_7.6.q-25 libx11-6_2:1.6.2-3 libx11-data_2:1.6.2-3 libx11-dev_2:1.6.2-3 libx11-xcb1_2:1.6.2-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.12-2 libxcb-dri2-0_1.10-3 libxcb-dri3-0_1.10-3 libxcb-glx0_1.10-3 libxcb-present0_1.10-3 libxcb-render0_1.10-3 libxcb-render0-dev_1.10-3 libxcb-shm0_1.10-3 libxcb-shm0-dev_1.10-3 libxcb-sync1_1.10-3 libxcb1_1.10-3 libxcb1-dev_1.10-3 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxfont1_1:1.5.1-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.4-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.8-1 libxml-libxml-perl_2.0116+dfsg-1+deb8u1 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml2_2.9.1+dfsg1-5+deb8u4 libxmu6_2:1.1.2-1 libxmuu1_2:1.1.2-1 libxpm4_1:3.5.12-0+deb8u1 libxrandr2_2:1.4.2-1 libxrender-dev_1:0.9.8-1 libxrender1_1:0.9.8-1 libxshmfence1_1.1-4+rpi1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.4-1 libxt6_1:1.1.4-1 libxtst6_2:1.2.2-1 libxxf86vm1_1:1.1.3-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.16.7-ckt11-1+deb8u4+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.58 mount_2.25.2-6 mountall_2.54 mpack_1.6-8 multiarch-support_2.19-18+deb8u1 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 openjdk-7-jdk_7u121-2.6.8-2~deb8u1+rpi1 openjdk-7-jre_7u121-2.6.8-2~deb8u1+rpi1 openjdk-7-jre-headless_7u121-2.6.8-2~deb8u1+rpi1 openssl_1.0.1t-1+deb8u6 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3+deb8u1 perl-base_5.20.2-3+deb8u1 perl-modules_5.20.2-3+deb8u1 pkg-config_0.28-1 plymouth_0.9.0-9 po-debconf_1.0.16+nmu3 poppler-data_0.4.7-1 preview-latex-style_11.87-3+deb8u1 procps_2:3.3.9-9 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.9-2+deb8u1 python2.7-minimal_2.7.9-2+deb8u1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 shared-mime-info_1.3-1 startpar_0.59-3 systemd_215-17+deb8u2 systemd-sysv_215-17+deb8u2 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tcl8.5_8.5.17-1 tcl8.5-dev_8.5.17-1 tex-common_5.03 texinfo_5.2.0.dfsg.1-6 texlive-base_2014.20141024-2+deb8u1 texlive-binaries_2014.20140926.35254-6 texlive-extra-utils_2014.20141024-1 texlive-fonts-extra_2014.20141024-1 texlive-fonts-recommended_2014.20141024-2+deb8u1 texlive-generic-recommended_2014.20141024-2+deb8u1 texlive-latex-base_2014.20141024-2+deb8u1 texlive-latex-extra_2014.20141024-1 texlive-latex-recommended_2014.20141024-2+deb8u1 texlive-pictures_2014.20141024-2+deb8u1 tk8.5_8.5.17-1 tk8.5-dev_8.5.17-1 ttf-adf-accanthis_0.20090423-2 ttf-adf-gillius_0.20090423-2 ttf-adf-universalis_0.20090423-2 tzdata_2016j-0+deb8u1 tzdata-java_2016j-0+deb8u1 ucf_3.0030 udev_215-17+deb8u2 util-linux_2.25.2-6 x11-common_1:7.7+7 x11-xkb-utils_7.7+1 x11proto-core-dev_7.0.26-1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 xauth_1:1.0.9-1 xdg-utils_1.1.0~rc1+git20111210-7.4 xfonts-base_1:1.0.3 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+2 xkb-data_2.12-1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.16.4-1 xtrans-dev_1.3.4-1 xvfb_2:1.16.4-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Mar 15 15:07:57 2017 UTC using RSA key ID AB99A21A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_3.1.1-1+deb8u1.dsc
dpkg-source: info: extracting r-base in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-base_3.1.1.orig.tar.gz
dpkg-source: info: applying r-base_3.1.1-1+deb8u1.diff.gz
dpkg-source: info: upstream files that have been modified: 
 /<<PKGBUILDDIR>>/src/extra/tzone/Makefile
 /<<PKGBUILDDIR>>/src/library/grDevices/src/devPS.c
 /<<PKGBUILDDIR>>/tests/Examples/utils-Ex.Rout.fail

Check disc space
----------------

df: Warning: cannot read table of mounted file systems: No such file or directory
Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-7c72f8a7-4f7e-4bae-86c6-6ed6e190cc0b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 3.1.1-1+deb8u1
dpkg-buildpackage: source distribution jessie-security
 dpkg-source --before-build r-base-3.1.1
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build arm-linux-gnueabihf
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking size of long double... 8
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.9 -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.5/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.10... yes
checking whether PCRE support needs to be compiled... no
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/extra/xz/Makefile
config.status: creating src/extra/zlib/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/modules/vfonts/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 77 compiler:       gfortran  -g -O2 -fstack-protector-strong

  C++ compiler:              g++  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  C++ 11 compiler:           g++  -std=c++11 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 90/95 compiler:    gfortran -g -O2 -fstack-protector-strong
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fstack-protector-strong"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		R
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrsl.f -o dtrsl.o
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1593:5: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
     ^
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -lblas -lgfortran -lm   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/bin/exec
mkdir -p -- /<<PKGBUILDDIR>>/lib
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -Wl,-z,relro -o R.bin Rmain.o  -L../../lib -lR 
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR  
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/modules
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -Wl,-z,relro -o lapack.so  Lapack.o  -L../../../lib -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gcc -std=gnu99 -shared -Wl,-z,relro -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm 
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm 
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -L../../../lib -lR -lm 
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo  -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.5 -L/usr/lib/arm-linux-gnueabihf -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
Copying source files
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
bessel_j.c: In function 'bessel_j':
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
bessel_y.c: In function 'bessel_y':
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
bessel_j.c: In function 'bessel_j':
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
  ^
bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
bessel_y.c: In function 'bessel_y':
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
      ^
bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: 'vfonts.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
you should 'make docs' now ...
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
installing parsed Rd
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
writing package indices
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
/usr/bin/make javaconf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/<<PKGBUILDDIR>>"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/lib/libR.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/main'
/<<PKGBUILDDIR>>/bin/exec/R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: 'vfonts.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
/<<PKGBUILDDIR>>/modules/R_X11.so is unchanged
/<<PKGBUILDDIR>>/modules/R_de.so is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
building package 'translations'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/translations'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/translations'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.7.0_121
Java home path   : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI progam 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include
detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.FmKjBt'
gcc -std=gnu99 -I/<<PKGBUILDDIR>>/include -DNDEBUG -I/usr/lib/jvm/java-7-openjdk-armhf/jre/../include     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-7-openjdk-armhf/jre/lib/arm/server -ljvm -L/<<PKGBUILDDIR>>/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.FmKjBt'


JAVA_HOME        : /usr/lib/jvm/java-7-openjdk-armhf/jre
Java library path: $(JAVA_HOME)/lib/arm/server
JNI cpp flags    : -I$(JAVA_HOME)/../include
JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm
Updating Java configuration in /<<PKGBUILDDIR>>
Done.

make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
touch make-arch-stamp
*** check ***
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/<<PKGBUILDDIR>>/debian/r-base-core
/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
installing doc ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/html'
installing doc/html ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
installing doc/manual ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/etc'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/share'
installing share ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/<<PKGBUILDDIR>>/share'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/bzip2'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/bzip2'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/pcre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/pcre'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/xz'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/xz'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/zlib'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/zlib'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/extra/intl'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/library'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
(cd src/unix; 						\
	rm -vf Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/unix'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install )
make[1]: Entering directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/include'
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src/nmath/standalone'
chmod a+x	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING  		
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING  	
removed '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr			\
		rdocdir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX .........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX .............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2014/05/01>
Babel <3.9l> and hyphenation patterns for 2 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/inconsolata.sty
`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
No file fullrefman.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
Underfull \hbox (badness 4595) in paragraph at lines 40--43
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
Underfull \hbox (badness 1960) in paragraph at lines 137--145
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

Underfull \hbox (badness 1668) in paragraph at lines 148--155
[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 291--295
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
Underfull \hbox (badness 3977) in paragraph at lines 374--377
[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 504--510
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1092--1095
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
Underfull \hbox (badness 4072) in paragraph at lines 1300--1306
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1801--1801
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 1986--1988
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3439--3441
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 2970) in paragraph at lines 4015--4021
[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[64] [65] [66] [67] [68] [69] [70] [71] [72]
Underfull \hbox (badness 2521) in paragraph at lines 4572--4574
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87]
[88] [89] [90] [91]
Underfull \hbox (badness 2096) in paragraph at lines 5776--5789
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[92] [93] [94] [95]
Underfull \hbox (badness 10000) in paragraph at lines 6098--6101
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[96] [97] [98]
Underfull \hbox (badness 1442) in paragraph at lines 6261--6267
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 1609) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-om-m
ended) when writ-ing it should

Underfull \hbox (badness 4954) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeChar("\ufe
ff", con, eos = NULL) \T1/ptm/m/n/10 or
[99]
Underfull \hbox (badness 3568) in paragraph at lines 6322--6329
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[100]
Underfull \vbox (badness 3803) has occurred while \output is active [101]
Underfull \vbox (badness 10000) has occurred while \output is active [102]
[103] [104] [105] [106] [107] [108] [109]
Underfull \hbox (badness 4595) in paragraph at lines 6927--6930
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for

Underfull \hbox (badness 2351) in paragraph at lines 6985--6988
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[110] [111] [112] [113] [114]
Underfull \hbox (badness 10000) in paragraph at lines 7230--7241
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[115]
Underfull \hbox (badness 4479) in paragraph at lines 7302--7311
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7302--7311
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1394) in paragraph at lines 8865--8870
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1052) in paragraph at lines 9202--9207
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9202--9207
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[145] [146]
Underfull \hbox (badness 10000) in paragraph at lines 9340--9344
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[147] [148] [149] [150] [151] [152]
Underfull \hbox (badness 2150) in paragraph at lines 9731--9734
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9745--9753
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[153]
Underfull \hbox (badness 2409) in paragraph at lines 9786--9793
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165]
[166] [167] [168]
Underfull \hbox (badness 4569) in paragraph at lines 10825--10829
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10825--10829
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[169] [170] [171] [172] [173] [174] [175] [176]
Underfull \hbox (badness 2698) in paragraph at lines 11369--11378
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11369--11378
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[177] [178] [179] [180] [181]
Underfull \vbox (badness 3803) has occurred while \output is active [182]
[183] [184] [185] [186] [187] [188] [189] [190]
Underfull \hbox (badness 2253) in paragraph at lines 12321--12323
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
Underfull \hbox (badness 1565) in paragraph at lines 12382--12386
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
Underfull \hbox (badness 10000) in paragraph at lines 12425--12427
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
Underfull \hbox (badness 1466) in paragraph at lines 12563--12566
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
Underfull \hbox (badness 10000) in paragraph at lines 12671--12675
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12682--12685
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[197] [198] [199] [200]
Underfull \hbox (badness 3965) in paragraph at lines 12929--12933
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212]
Underfull \hbox (badness 4429) in paragraph at lines 13658--13661
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
Underfull \hbox (badness 10000) in paragraph at lines 13744--13746
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13750--13754
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
Underfull \hbox (badness 2790) in paragraph at lines 13789--13792
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[215] [216] [217] [218] [219] [220] [221] [222] [223]
Underfull \hbox (badness 2452) in paragraph at lines 14360--14364
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14360--14364
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[224] [225]
Underfull \hbox (badness 1092) in paragraph at lines 14511--14516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[226] [227] [228] [229]
Underfull \hbox (badness 6741) in paragraph at lines 14759--14763
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[230] [231] [232] [233] [234]
Underfull \hbox (badness 1867) in paragraph at lines 15065--15072
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[235] [236] [237] [238]
Underfull \vbox (badness 10000) has occurred while \output is active [239]
[240]
Underfull \hbox (badness 3679) in paragraph at lines 15431--15433
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[241] [242] [243] [244] [245] [246]
Underfull \hbox (badness 1478) in paragraph at lines 15900--15903
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1442) in paragraph at lines 16596--16598
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
Underfull \hbox (badness 2452) in paragraph at lines 16688--16704
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[271] [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282]
[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
[475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486]
[487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498]
[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522]
[523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534]
[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
Underfull \hbox (badness 1917) in paragraph at lines 38156--38163
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
Underfull \hbox (badness 3668) in paragraph at lines 38726--38728
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
Underfull \hbox (badness 2401) in paragraph at lines 38829--38833
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
Underfull \hbox (badness 2111) in paragraph at lines 38992--38997
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 39008--39013
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
Underfull \hbox (badness 5417) in paragraph at lines 39526--39530
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
Underfull \hbox (badness 10000) in paragraph at lines 39587--39591
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
[659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669]
Underfull \vbox (badness 1237) has occurred while \output is active [670]
[671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682]
[683] [684] [685] [686] [687] [688] [689]
Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
Underfull \vbox (badness 10000) has occurred while \output is active [691]
[692] [693] [694]
Underfull \vbox (badness 10000) has occurred while \output is active [695]
Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
Underfull \hbox (badness 10000) in paragraph at lines 1576--1580
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
Underfull \hbox (badness 10000) in paragraph at lines 1964--1966
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[736] [737] [738]
Underfull \hbox (badness 6758) in paragraph at lines 2124--2127
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[739] [740] [741] [742] [743] [744] [745] [746]
Underfull \hbox (badness 10000) in paragraph at lines 2641--2642

[747] [748] [749] [750] [751] [752] [753]
Underfull \hbox (badness 1152) in paragraph at lines 3079--3081
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[754] [755] [756] [757] [758]
Underfull \hbox (badness 2856) in paragraph at lines 3400--3403
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3414--3416
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[759] [760]
Underfull \hbox (badness 1173) in paragraph at lines 3530--3540
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[761] [762] [763] [764] [765] [766] [767]
Underfull \vbox (badness 10000) has occurred while \output is active [768]
[769]
Underfull \vbox (badness 3803) has occurred while \output is active [770]
[771]
Underfull \hbox (badness 1067) in paragraph at lines 4230--4237
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[772] [773]
Underfull \hbox (badness 5231) in paragraph at lines 4391--4393
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[774]
Underfull \hbox (badness 1789) in paragraph at lines 4468--4470
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[775]
Underfull \hbox (badness 1377) in paragraph at lines 4518--4523
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[776]
Underfull \hbox (badness 2671) in paragraph at lines 4545--4553
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4594--4601
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4612--4614
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[777] [778]
Underfull \hbox (badness 1057) in paragraph at lines 4723--4728
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[779]
Underfull \hbox (badness 7344) in paragraph at lines 4783--4785
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[780] [781]
Underfull \hbox (badness 2035) in paragraph at lines 4907--4916
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
Underfull \hbox (badness 6775) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

Underfull \hbox (badness 7344) in paragraph at lines 4994--4996
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
Underfull \hbox (badness 1546) in paragraph at lines 5114--5122
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[786]
Underfull \hbox (badness 1648) in paragraph at lines 5191--5195
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 10000) in paragraph at lines 5613--5616
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[794]
Underfull \vbox (badness 3803) has occurred while \output is active [795]
[796] [797] [798] [799]
Underfull \hbox (badness 1189) in paragraph at lines 6009--6011
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 6107--6109
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[802] [803] [804] [805]
Underfull \hbox (badness 3780) in paragraph at lines 6398--6404
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[806] [807] [808]
Underfull \hbox (badness 2680) in paragraph at lines 6594--6596
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[824] [825] [826] [827]
Underfull \vbox (badness 3803) has occurred while \output is active [828]
[829] [830] [831] [832]
Underfull \hbox (badness 4634) in paragraph at lines 1246--1249
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844]
[845] [846] [847] [848] [849]
Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861]
[862] [863] [864] [865] [866] [867] [868] [869] [870] [871]
Underfull \vbox (badness 3803) has occurred while \output is active [872]
Underfull \vbox (badness 10000) has occurred while \output is active [873]
[874] [875] [876]
Underfull \hbox (badness 1867) in paragraph at lines 3903--3907
[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[877] [878] [879] [880] [881] [882] [883] [884]
Underfull \hbox (badness 1924) in paragraph at lines 4354--4359
[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

Underfull \hbox (badness 2529) in paragraph at lines 4383--4386
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[885] [886] [887] [888] [889]
Underfull \hbox (badness 10000) in paragraph at lines 4727--4733
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4727--4733
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[890] [891]
Underfull \hbox (badness 10000) in paragraph at lines 4857--4860


</<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf, id=14
725, 289.08pt x 289.08pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>
[892 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]

Underfull \hbox (badness 10000) in paragraph at lines 4918--4920


</<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf, id=14
739, 259.97125pt x 332.24126pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>
[893 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[894] [895]
Underfull \hbox (badness 10000) in paragraph at lines 5111--5113
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907]
[908] [909] [910] [911] [912] [913] [914] [915] [916] [917]
</<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf, id=15
167, 361.35pt x 50.1875pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516
[][] 
[918 </<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>]
[919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929]
Underfull \hbox (badness 1048) in paragraph at lines 7224--7229
\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[930] [931]
Underfull \hbox (badness 1038) in paragraph at lines 7340--7343
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \hbox (badness 6691) in paragraph at lines 8558--8561
[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

Underfull \hbox (badness 2799) in paragraph at lines 8561--8563
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[953]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [959]
[960] [961] [962] [963] [964]
Underfull \hbox (badness 2680) in paragraph at lines 390--393
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[965] [966] [967] [968] [969] [970] [971] [972] [973] [974]
Underfull \hbox (badness 4279) in paragraph at lines 972--981
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986]
[987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998]
[999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009]
[1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020]
[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031]
Underfull \hbox (badness 1067) in paragraph at lines 4342--4345
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1032] [1033] [1034] [1035]
Underfull \hbox (badness 7256) in paragraph at lines 4585--4587
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046]
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 10000) in paragraph at lines 5856--5862
\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064]
Underfull \hbox (badness 7649) in paragraph at lines 6326--6329
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
Underfull \vbox (badness 2277) has occurred while \output is active [1085]
[1086] [1087] [1088]
Underfull \hbox (badness 2237) in paragraph at lines 1432--1434
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097]
Underfull \hbox (badness 10000) in paragraph at lines 2028--2033
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 2028--2033
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
Underfull \hbox (badness 10000) in paragraph at lines 2628--2631
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1106] [1107]
Underfull \hbox (badness 1132) in paragraph at lines 2768--2772
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1108]
Underfull \hbox (badness 1033) in paragraph at lines 2800--2805
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1109] [1110] [1111] [1112] [1113] [1114] [1115]
Underfull \hbox (badness 1102) in paragraph at lines 3308--3310
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1116] [1117] [1118] [1119] [1120]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

Underfull \hbox (badness 10000) in paragraph at lines 3645--3654
[]\T1/ptm/m/n/10 The
[1121] [1122] [1123] [1124] [1125] [1126]
Underfull \vbox (badness 10000) has occurred while \output is active [1127]
[1128] [1129] [1130] [1131] [1132] [1133] [1134]
Underfull \hbox (badness 1436) in paragraph at lines 4550--4553
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

Underfull \hbox (badness 1769) in paragraph at lines 4579--4585
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4579--4585
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1135] [1136] [1137] [1138] [1139] [1140]
Underfull \vbox (badness 2111) has occurred while \output is active [1141]
[1142]
Underfull \vbox (badness 10000) has occurred while \output is active [1143]
[1144]
Underfull \hbox (badness 1092) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

Underfull \hbox (badness 4036) in paragraph at lines 5299--5302
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1150] [1151] [1152] [1153]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161]
Underfull \vbox (badness 10000) has occurred while \output is active [1162]
[1163]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6703 \aliasA{S4}{S3Part}{S4}
                               [1164] [1165] [1166] [1167]pdfTeX warning (ext4)
: destination with the same identifier (name{Rfn.Complex}) has been already use
d, duplicate ignored
<to be read again> 
                   \relax 
l.6979 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.6982 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.6984 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.6985 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1168]
Underfull \hbox (badness 2050) in paragraph at lines 7046--7050
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
Underfull \hbox (badness 1286) in paragraph at lines 7231--7233
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193]
Underfull \vbox (badness 10000) has occurred while \output is active [1194]
[1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
Underfull \hbox (badness 2894) in paragraph at lines 9564--9568
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
Underfull \hbox (badness 1852) in paragraph at lines 9643--9647
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
Underfull \hbox (badness 3386) in paragraph at lines 1236--1239
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
[1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259]
[1260] [1261]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283]
Underfull \hbox (badness 3965) in paragraph at lines 2163--2165
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1284] [1285] [1286] [1287] [1288]
Underfull \hbox (badness 3965) in paragraph at lines 2495--2497
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299]
[1300] [1301]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6289--6291
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
Underfull \vbox (badness 3803) has occurred while \output is active [1351]
[1352] [1353] [1354]
Underfull \vbox (badness 10000) has occurred while \output is active [1355]
[1356] [1357] [1358] [1359] [1360] [1361] [1362]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
Underfull \hbox (badness 2626) in paragraph at lines 8704--8707
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
Underfull \hbox (badness 2503) in paragraph at lines 8804--8808
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9138--9140
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
Underfull \hbox (badness 1694) in paragraph at lines 10856--10859
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 4441) in paragraph at lines 11997--11999
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12004--12006
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 2894) in paragraph at lines 12338--12342
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
Underfull \hbox (badness 4518) in paragraph at lines 13020--13025
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 4518) in paragraph at lines 13667--13672
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2503) in paragraph at lines 14866--14870
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1418) in paragraph at lines 15375--15381
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518]
Underfull \vbox (badness 3803) has occurred while \output is active [1519]
[1520] [1521]
Underfull \hbox (badness 2359) in paragraph at lines 17001--17003
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
Underfull \vbox (badness 10000) has occurred while \output is active [1523]
Underfull \vbox (badness 10000) has occurred while \output is active [1524]
[1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535]
[1536]
Underfull \hbox (badness 1377) in paragraph at lines 17912--17917
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17917--17920
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 17930--17934
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
Underfull \hbox (badness 2662) in paragraph at lines 17938--17942
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1538] [1539]
Underfull \vbox (badness 3803) has occurred while \output is active [1540]
[1541] [1542] [1543] [1544] [1545] [1546] [1547]
Underfull \hbox (badness 1337) in paragraph at lines 18554--18557
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558]
[1559] [1560]
Underfull \hbox (badness 5563) in paragraph at lines 19280--19282
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1561] [1562] [1563] [1564] [1565] [1566]
Underfull \hbox (badness 2503) in paragraph at lines 19649--19652
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
Underfull \hbox (badness 10000) in paragraph at lines 19676--19678
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
Underfull \hbox (badness 1337) in paragraph at lines 21967--21973
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
Underfull \hbox (badness 10000) in paragraph at lines 23335--23338
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
Underfull \hbox (badness 3690) in paragraph at lines 23386--23390
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656]
[1657] [1658] [1659] [1660]
Underfull \vbox (badness 3803) has occurred while \output is active [1661]
[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
Underfull \hbox (badness 3514) in paragraph at lines 25599--25605
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
Underfull \hbox (badness 3514) in paragraph at lines 25980--25985
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724]
Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1725] [1726] [1727]
Underfull \vbox (badness 10000) has occurred while \output is active [1728]
[1729] [1730]
Underfull \hbox (badness 1337) in paragraph at lines 29484--29488
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
Underfull \hbox (badness 5161) in paragraph at lines 30061--30063
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 30425--30430
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
[1759] [1760] [1761] [1762] [1763] [1764] [1765]
Underfull \vbox (badness 10000) has occurred while \output is active [1766]
Underfull \vbox (badness 10000) has occurred while \output is active [1767]
Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1768] [1769] [1770] [1771]
Underfull \vbox (badness 10000) has occurred while \output is active [1772]
[1773] [1774] [1775] [1776] [1777] [1778]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
[1781]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1782]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1783] [1784]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1785] [1786]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1787] [1788] [1789] [1790] [1791] [1792] [1793]
Underfull \vbox (badness 10000) has occurred while \output is active [1794]
[1795] [1796] [1797]
Underfull \hbox (badness 1635) in paragraph at lines 1047--1049
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1798]
Underfull \hbox (badness 4441) in paragraph at lines 1116--1124
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1799]
Underfull \hbox (badness 1014) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 10000) in paragraph at lines 1165--1168
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1165--1168
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1800] [1801]
Underfull \hbox (badness 10000) in paragraph at lines 1293--1295
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
Underfull \hbox (badness 7981) in paragraph at lines 1463--1467
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1805] [1806] [1807] [1808] [1809] [1810]
Underfull \hbox (badness 5726) in paragraph at lines 1789--1794
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1789--1794
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 7981) in paragraph at lines 2180--2186
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1817] [1818] [1819] [1820]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2434.

[1821] [1822] [1823] [1824]
Underfull \hbox (badness 1424) in paragraph at lines 2671--2673
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835]
[1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 1838) in paragraph at lines 3694--3700
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 3694--3700
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1842]
Underfull \hbox (badness 5726) in paragraph at lines 3774--3779
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3774--3779
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1843] [1844]
Underfull \hbox (badness 1688) in paragraph at lines 3916--3928
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1850] [1851]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 10000) in paragraph at lines 536--542
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 536--542
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
Underfull \hbox (badness 5847) in paragraph at lines 647--653
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 647--653
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1859]
Underfull \hbox (badness 3861) in paragraph at lines 715--720
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
Underfull \hbox (badness 1371) in paragraph at lines 1298--1300
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1870] [1871] [1872] [1873] [1874] [1875]
Underfull \hbox (badness 2057) in paragraph at lines 1747--1749
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 1841--1843
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1878]
Underfull \hbox (badness 5189) in paragraph at lines 1931--1933
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1879] [1880] [1881] [1882]
Underfull \hbox (badness 1661) in paragraph at lines 2146--2153
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

Underfull \hbox (badness 1990) in paragraph at lines 2163--2166
[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893]
[1894] [1895] [1896] [1897]
Underfull \hbox (badness 1430) in paragraph at lines 3144--3150
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3144--3150
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1898]
Underfull \hbox (badness 1231) in paragraph at lines 3188--3194
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
[1910]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                   [1911] [1912] [1913]
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
[1925]
Underfull \hbox (badness 1371) in paragraph at lines 4902--4904
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1926] [1927]
Underfull \hbox (badness 1502) in paragraph at lines 4991--4996
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 4991--4996
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1928] [1929]
Underfull \hbox (badness 10000) in paragraph at lines 5153--5162
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1930] [1931]
Underfull \hbox (badness 3118) in paragraph at lines 5269--5271
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1932] [1933]
Underfull \hbox (badness 1348) in paragraph at lines 5405--5410
[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

Underfull \hbox (badness 3884) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

Underfull \hbox (badness 1466) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

Underfull \hbox (badness 10000) in paragraph at lines 5431--5435
[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 5431--5435
\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1934]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1935] [1936]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5625
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947]
[1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6783
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

Underfull \hbox (badness 2310) in paragraph at lines 6786--6791
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1956] [1957] [1958]
Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
[1959] [1960] [1961] [1962] [1963]
Underfull \hbox (badness 1789) in paragraph at lines 7324--7326
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973]
Underfull \vbox (badness 2401) has occurred while \output is active [1974]
[1975] [1976]
Underfull \hbox (badness 1097) in paragraph at lines 8145--8148
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1977] [1978]
Underfull \hbox (badness 3000) in paragraph at lines 8276--8281
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 2134) in paragraph at lines 8850--8855
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997]
[1998] [1999] [2000] [2001] [2002]
Underfull \hbox (badness 10000) in paragraph at lines 9791--9793
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[2003] [2004] [2005]
Underfull \hbox (badness 10000) in paragraph at lines 9969--9973
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2006]
Underfull \hbox (badness 10000) in paragraph at lines 10000--10006
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2007]
Underfull \hbox (badness 2096) in paragraph at lines 10118--10121
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

Underfull \hbox (badness 1527) in paragraph at lines 10122--10125
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2008]
Underfull \hbox (badness 1009) in paragraph at lines 10188--10199
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2009] [2010] [2011] [2012] [2013]
Underfull \hbox (badness 2142) in paragraph at lines 10480--10484
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 10495--10498
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2014] [2015] [2016] [2017] [2018] [2019]
Underfull \hbox (badness 5970) in paragraph at lines 10864--10867
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

Underfull \hbox (badness 3449) in paragraph at lines 10875--10884
[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-

Underfull \hbox (badness 2512) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-

Underfull \hbox (badness 1824) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )

Underfull \hbox (badness 3769) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
[2020] [2021] [2022]
Underfull \hbox (badness 10000) in paragraph at lines 11043--11045
[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
[2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 10000) in paragraph at lines 11440--11443
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /

Underfull \hbox (badness 2245) in paragraph at lines 11440--11443
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037]
Underfull \hbox (badness 10000) in paragraph at lines 11964--11966
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 1052) in paragraph at lines 11967--11969
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
[2038]
Underfull \hbox (badness 10000) in paragraph at lines 12026--12029
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2039] [2040] [2041] [2042] [2043]
Underfull \hbox (badness 1454) in paragraph at lines 12329--12333
[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
[2044]
Underfull \hbox (badness 10000) in paragraph at lines 12399--12401
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g.
[2045] [2046] [2047]) [2048]
No file fullrefman.ind.
(./fullrefman.aux)

Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.standardGeneric} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1
/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb
i8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2051 pages, 5037561 bytes).
Transcript written on fullrefman.log.
This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support).
Scanning input file fullrefman.idx................done (12584 entries accepted, 33 rejected).
Sorting entries..........................................................................................................................................done (202131 comparisons).
Generating output file fullrefman.ind...............done (12516 lines written, 49 warnings).
Output written in fullrefman.ind.
Transcript written in fullrefman.ilg.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2014/05/01>
Babel <3.9l> and hyphenation patterns for 2 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/inconsolata.sty
`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28]) [29] [30] (./base-pkg.tex
Chapter 1.

Underfull \hbox (badness 4595) in paragraph at lines 40--43
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
Underfull \hbox (badness 1960) in paragraph at lines 137--145
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

Underfull \hbox (badness 1668) in paragraph at lines 148--155
[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 291--295
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
Underfull \hbox (badness 3977) in paragraph at lines 374--377
[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 504--510
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1092--1095
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
Underfull \hbox (badness 4072) in paragraph at lines 1300--1306
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1801--1801
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 1986--1988
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3439--3441
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 2970) in paragraph at lines 4015--4021
[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[64] [65] [66] [67] [68] [69] [70] [71] [72]
Underfull \hbox (badness 2521) in paragraph at lines 4572--4574
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87]
[88] [89] [90] [91]
Underfull \hbox (badness 2096) in paragraph at lines 5776--5789
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[92] [93] [94] [95]
Underfull \hbox (badness 10000) in paragraph at lines 6098--6101
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[96] [97] [98]
Underfull \hbox (badness 1442) in paragraph at lines 6261--6267
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 1609) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-om-m
ended) when writ-ing it should

Underfull \hbox (badness 4954) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeChar("\ufe
ff", con, eos = NULL) \T1/ptm/m/n/10 or
[99]
Underfull \hbox (badness 3568) in paragraph at lines 6322--6329
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[100]
Underfull \vbox (badness 3803) has occurred while \output is active [101]
Underfull \vbox (badness 10000) has occurred while \output is active [102]
[103] [104] [105] [106] [107] [108] [109]
Underfull \hbox (badness 4595) in paragraph at lines 6927--6930
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for

Underfull \hbox (badness 2351) in paragraph at lines 6985--6988
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[110] [111] [112] [113] [114]
Underfull \hbox (badness 10000) in paragraph at lines 7230--7241
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[115]
Underfull \hbox (badness 4479) in paragraph at lines 7302--7311
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7302--7311
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1394) in paragraph at lines 8865--8870
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1052) in paragraph at lines 9202--9207
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9202--9207
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[145] [146]
Underfull \hbox (badness 10000) in paragraph at lines 9340--9344
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[147] [148] [149] [150] [151] [152]
Underfull \hbox (badness 2150) in paragraph at lines 9731--9734
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9745--9753
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[153]
Underfull \hbox (badness 2409) in paragraph at lines 9786--9793
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165]
[166] [167] [168]
Underfull \hbox (badness 4569) in paragraph at lines 10825--10829
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10825--10829
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[169] [170] [171] [172] [173] [174] [175] [176]
Underfull \hbox (badness 2698) in paragraph at lines 11369--11378
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11369--11378
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[177] [178] [179] [180] [181]
Underfull \vbox (badness 3803) has occurred while \output is active [182]
[183] [184] [185] [186] [187] [188] [189] [190]
Underfull \hbox (badness 2253) in paragraph at lines 12321--12323
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
Underfull \hbox (badness 1565) in paragraph at lines 12382--12386
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
Underfull \hbox (badness 10000) in paragraph at lines 12425--12427
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
Underfull \hbox (badness 1466) in paragraph at lines 12563--12566
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
Underfull \hbox (badness 10000) in paragraph at lines 12671--12675
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12682--12685
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[197] [198] [199] [200]
Underfull \hbox (badness 3965) in paragraph at lines 12929--12933
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212]
Underfull \hbox (badness 4429) in paragraph at lines 13658--13661
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
Underfull \hbox (badness 10000) in paragraph at lines 13744--13746
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13750--13754
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
Underfull \hbox (badness 2790) in paragraph at lines 13789--13792
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[215] [216] [217] [218] [219] [220] [221] [222] [223]
Underfull \hbox (badness 2452) in paragraph at lines 14360--14364
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14360--14364
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[224] [225]
Underfull \hbox (badness 1092) in paragraph at lines 14511--14516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[226] [227] [228] [229]
Underfull \hbox (badness 6741) in paragraph at lines 14759--14763
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[230] [231] [232] [233] [234]
Underfull \hbox (badness 1867) in paragraph at lines 15065--15072
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[235] [236] [237] [238]
Underfull \vbox (badness 10000) has occurred while \output is active [239]
[240]
Underfull \hbox (badness 3679) in paragraph at lines 15431--15433
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[241] [242] [243] [244] [245] [246]
Underfull \hbox (badness 1478) in paragraph at lines 15900--15903
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1442) in paragraph at lines 16596--16598
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
Underfull \hbox (badness 2452) in paragraph at lines 16688--16704
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[271] [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282]
[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
[475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486]
[487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498]
[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522]
[523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534]
[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
Underfull \hbox (badness 1917) in paragraph at lines 38156--38163
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
Underfull \hbox (badness 3668) in paragraph at lines 38726--38728
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
Underfull \hbox (badness 2401) in paragraph at lines 38829--38833
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
Underfull \hbox (badness 2111) in paragraph at lines 38992--38997
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 39008--39013
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
Underfull \hbox (badness 5417) in paragraph at lines 39526--39530
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
Underfull \hbox (badness 10000) in paragraph at lines 39587--39591
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
[659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669]
Underfull \vbox (badness 1237) has occurred while \output is active [670]
[671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682]
[683] [684] [685] [686] [687] [688] [689]
Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
Underfull \vbox (badness 10000) has occurred while \output is active [691]
[692] [693] [694]
Underfull \vbox (badness 10000) has occurred while \output is active [695]
Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
Underfull \hbox (badness 10000) in paragraph at lines 1576--1580
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
Underfull \hbox (badness 10000) in paragraph at lines 1964--1966
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[736] [737] [738]
Underfull \hbox (badness 6758) in paragraph at lines 2124--2127
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[739] [740] [741] [742] [743] [744] [745] [746]
Underfull \hbox (badness 10000) in paragraph at lines 2641--2642

[747] [748] [749] [750] [751] [752] [753]
Underfull \hbox (badness 1152) in paragraph at lines 3079--3081
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[754] [755] [756] [757] [758]
Underfull \hbox (badness 2856) in paragraph at lines 3400--3403
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3414--3416
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[759] [760]
Underfull \hbox (badness 1173) in paragraph at lines 3530--3540
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[761] [762] [763] [764] [765] [766] [767]
Underfull \vbox (badness 10000) has occurred while \output is active [768]
[769]
Underfull \vbox (badness 3803) has occurred while \output is active [770]
[771]
Underfull \hbox (badness 1067) in paragraph at lines 4230--4237
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[772] [773]
Underfull \hbox (badness 5231) in paragraph at lines 4391--4393
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[774]
Underfull \hbox (badness 1789) in paragraph at lines 4468--4470
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[775]
Underfull \hbox (badness 1377) in paragraph at lines 4518--4523
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[776]
Underfull \hbox (badness 2671) in paragraph at lines 4545--4553
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4594--4601
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4612--4614
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[777] [778]
Underfull \hbox (badness 1057) in paragraph at lines 4723--4728
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[779]
Underfull \hbox (badness 7344) in paragraph at lines 4783--4785
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[780] [781]
Underfull \hbox (badness 2035) in paragraph at lines 4907--4916
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
Underfull \hbox (badness 6775) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

Underfull \hbox (badness 7344) in paragraph at lines 4994--4996
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
Underfull \hbox (badness 1546) in paragraph at lines 5114--5122
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[786]
Underfull \hbox (badness 1648) in paragraph at lines 5191--5195
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 10000) in paragraph at lines 5613--5616
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[794]
Underfull \vbox (badness 3803) has occurred while \output is active [795]
[796] [797] [798] [799]
Underfull \hbox (badness 1189) in paragraph at lines 6009--6011
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 6107--6109
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[802] [803] [804] [805]
Underfull \hbox (badness 3780) in paragraph at lines 6398--6404
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[806] [807] [808]
Underfull \hbox (badness 2680) in paragraph at lines 6594--6596
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[824] [825] [826] [827]
Underfull \vbox (badness 3803) has occurred while \output is active [828]
[829] [830] [831] [832]
Underfull \hbox (badness 4634) in paragraph at lines 1246--1249
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844]
[845] [846] [847] [848] [849]
Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861]
[862] [863] [864] [865] [866] [867] [868] [869] [870] [871]
Underfull \vbox (badness 3803) has occurred while \output is active [872]
Underfull \vbox (badness 10000) has occurred while \output is active [873]
[874] [875] [876]
Underfull \hbox (badness 1867) in paragraph at lines 3903--3907
[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[877] [878] [879] [880] [881] [882] [883] [884]
Underfull \hbox (badness 1924) in paragraph at lines 4354--4359
[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

Underfull \hbox (badness 2529) in paragraph at lines 4383--4386
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[885] [886] [887] [888] [889]
Underfull \hbox (badness 10000) in paragraph at lines 4727--4733
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4727--4733
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[890] [891]
Underfull \hbox (badness 10000) in paragraph at lines 4857--4860


</<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf, id=21
681, 289.08pt x 289.08pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>
[892 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]

Underfull \hbox (badness 10000) in paragraph at lines 4918--4920


</<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf, id=21
694, 259.97125pt x 332.24126pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>
[893 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[894] [895]
Underfull \hbox (badness 10000) in paragraph at lines 5111--5113
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907]
[908] [909] [910] [911] [912] [913] [914] [915] [916] [917]
</<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf, id=22
096, 361.35pt x 50.1875pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516
[][] 
[918 </<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>]
[919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929]
Underfull \hbox (badness 1048) in paragraph at lines 7224--7229
\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[930] [931]
Underfull \hbox (badness 1038) in paragraph at lines 7340--7343
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \hbox (badness 6691) in paragraph at lines 8558--8561
[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

Underfull \hbox (badness 2799) in paragraph at lines 8561--8563
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[953]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [959]
[960] [961] [962] [963] [964]
Underfull \hbox (badness 2680) in paragraph at lines 390--393
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[965] [966] [967] [968] [969] [970] [971] [972] [973] [974]
Underfull \hbox (badness 4279) in paragraph at lines 972--981
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986]
[987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998]
[999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009]
[1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020]
[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031]
Underfull \hbox (badness 1067) in paragraph at lines 4342--4345
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1032] [1033] [1034] [1035]
Underfull \hbox (badness 7256) in paragraph at lines 4585--4587
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046]
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 10000) in paragraph at lines 5856--5862
\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064]
Underfull \hbox (badness 7649) in paragraph at lines 6326--6329
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
Underfull \vbox (badness 2277) has occurred while \output is active [1085]
[1086] [1087] [1088]
Underfull \hbox (badness 2237) in paragraph at lines 1432--1434
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097]
Underfull \hbox (badness 10000) in paragraph at lines 2028--2033
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 2028--2033
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
Underfull \hbox (badness 10000) in paragraph at lines 2628--2631
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1106] [1107]
Underfull \hbox (badness 1132) in paragraph at lines 2768--2772
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1108]
Underfull \hbox (badness 1033) in paragraph at lines 2800--2805
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1109] [1110] [1111] [1112] [1113] [1114] [1115]
Underfull \hbox (badness 1102) in paragraph at lines 3308--3310
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1116] [1117] [1118] [1119] [1120]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

Underfull \hbox (badness 10000) in paragraph at lines 3645--3654
[]\T1/ptm/m/n/10 The
[1121] [1122] [1123] [1124] [1125] [1126]
Underfull \vbox (badness 10000) has occurred while \output is active [1127]
[1128] [1129] [1130] [1131] [1132] [1133] [1134]
Underfull \hbox (badness 1436) in paragraph at lines 4550--4553
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

Underfull \hbox (badness 1769) in paragraph at lines 4579--4585
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4579--4585
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1135] [1136] [1137] [1138] [1139] [1140]
Underfull \vbox (badness 2111) has occurred while \output is active [1141]
[1142]
Underfull \vbox (badness 10000) has occurred while \output is active [1143]
[1144]
Underfull \hbox (badness 1092) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

Underfull \hbox (badness 4036) in paragraph at lines 5299--5302
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1150] [1151] [1152] [1153]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161]
Underfull \vbox (badness 10000) has occurred while \output is active [1162]
[1163]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6703 \aliasA{S4}{S3Part}{S4}
                               [1164] [1165] [1166] [1167]pdfTeX warning (ext4)
: destination with the same identifier (name{Rfn.Complex}) has been already use
d, duplicate ignored
<to be read again> 
                   \relax 
l.6979 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.6982 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.6984 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.6985 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1168]
Underfull \hbox (badness 2050) in paragraph at lines 7046--7050
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
Underfull \hbox (badness 1286) in paragraph at lines 7231--7233
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193]
Underfull \vbox (badness 10000) has occurred while \output is active [1194]
[1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
Underfull \hbox (badness 2894) in paragraph at lines 9564--9568
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
Underfull \hbox (badness 1852) in paragraph at lines 9643--9647
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
Underfull \hbox (badness 3386) in paragraph at lines 1236--1239
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
[1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259]
[1260] [1261]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283]
Underfull \hbox (badness 3965) in paragraph at lines 2163--2165
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1284] [1285] [1286] [1287] [1288]
Underfull \hbox (badness 3965) in paragraph at lines 2495--2497
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299]
[1300] [1301]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6289--6291
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
Underfull \vbox (badness 3803) has occurred while \output is active [1351]
[1352] [1353] [1354]
Underfull \vbox (badness 10000) has occurred while \output is active [1355]
[1356] [1357] [1358] [1359] [1360] [1361] [1362]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
Underfull \hbox (badness 2626) in paragraph at lines 8704--8707
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
Underfull \hbox (badness 2503) in paragraph at lines 8804--8808
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9138--9140
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
Underfull \hbox (badness 1694) in paragraph at lines 10856--10859
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 4441) in paragraph at lines 11997--11999
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12004--12006
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 2894) in paragraph at lines 12338--12342
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
Underfull \hbox (badness 4518) in paragraph at lines 13020--13025
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 4518) in paragraph at lines 13667--13672
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2503) in paragraph at lines 14866--14870
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1418) in paragraph at lines 15375--15381
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518]
Underfull \vbox (badness 3803) has occurred while \output is active [1519]
[1520] [1521]
Underfull \hbox (badness 2359) in paragraph at lines 17001--17003
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
Underfull \vbox (badness 10000) has occurred while \output is active [1523]
Underfull \vbox (badness 10000) has occurred while \output is active [1524]
[1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535]
[1536]
Underfull \hbox (badness 1377) in paragraph at lines 17912--17917
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17917--17920
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 17930--17934
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
Underfull \hbox (badness 2662) in paragraph at lines 17938--17942
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1538] [1539]
Underfull \vbox (badness 3803) has occurred while \output is active [1540]
[1541] [1542] [1543] [1544] [1545] [1546] [1547]
Underfull \hbox (badness 1337) in paragraph at lines 18554--18557
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558]
[1559] [1560]
Underfull \hbox (badness 5563) in paragraph at lines 19280--19282
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1561] [1562] [1563] [1564] [1565] [1566]
Underfull \hbox (badness 2503) in paragraph at lines 19649--19652
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
Underfull \hbox (badness 10000) in paragraph at lines 19676--19678
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
Underfull \hbox (badness 1337) in paragraph at lines 21967--21973
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
Underfull \hbox (badness 10000) in paragraph at lines 23335--23338
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
Underfull \hbox (badness 3690) in paragraph at lines 23386--23390
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656]
[1657] [1658] [1659] [1660]
Underfull \vbox (badness 3803) has occurred while \output is active [1661]
[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
Underfull \hbox (badness 3514) in paragraph at lines 25599--25605
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
Underfull \hbox (badness 3514) in paragraph at lines 25980--25985
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724]
Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1725] [1726] [1727]
Underfull \vbox (badness 10000) has occurred while \output is active [1728]
[1729] [1730]
Underfull \hbox (badness 1337) in paragraph at lines 29484--29488
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
Underfull \hbox (badness 5161) in paragraph at lines 30061--30063
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 30425--30430
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
[1759] [1760] [1761] [1762] [1763] [1764] [1765]
Underfull \vbox (badness 10000) has occurred while \output is active [1766]
Underfull \vbox (badness 10000) has occurred while \output is active [1767]
Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1768] [1769] [1770] [1771]
Underfull \vbox (badness 10000) has occurred while \output is active [1772]
[1773] [1774] [1775] [1776] [1777] [1778]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
[1781]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1782]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1783] [1784]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1785] [1786]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1787] [1788] [1789] [1790] [1791] [1792] [1793]
Underfull \vbox (badness 10000) has occurred while \output is active [1794]
[1795] [1796] [1797]
Underfull \hbox (badness 1635) in paragraph at lines 1047--1049
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1798]
Underfull \hbox (badness 4441) in paragraph at lines 1116--1124
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1799]
Underfull \hbox (badness 1014) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 10000) in paragraph at lines 1165--1168
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1165--1168
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1800] [1801]
Underfull \hbox (badness 10000) in paragraph at lines 1293--1295
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
Underfull \hbox (badness 7981) in paragraph at lines 1463--1467
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1805] [1806] [1807] [1808] [1809] [1810]
Underfull \hbox (badness 5726) in paragraph at lines 1789--1794
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1789--1794
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 7981) in paragraph at lines 2180--2186
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1817] [1818] [1819] [1820]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2434.

[1821] [1822] [1823] [1824]
Underfull \hbox (badness 1424) in paragraph at lines 2671--2673
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835]
[1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 1838) in paragraph at lines 3694--3700
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 3694--3700
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1842]
Underfull \hbox (badness 5726) in paragraph at lines 3774--3779
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3774--3779
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1843] [1844]
Underfull \hbox (badness 1688) in paragraph at lines 3916--3928
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1850] [1851]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 10000) in paragraph at lines 536--542
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 536--542
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
Underfull \hbox (badness 5847) in paragraph at lines 647--653
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 647--653
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1859]
Underfull \hbox (badness 3861) in paragraph at lines 715--720
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
Underfull \hbox (badness 1371) in paragraph at lines 1298--1300
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1870] [1871] [1872] [1873] [1874] [1875]
Underfull \hbox (badness 2057) in paragraph at lines 1747--1749
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 1841--1843
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1878]
Underfull \hbox (badness 5189) in paragraph at lines 1931--1933
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1879] [1880] [1881] [1882]
Underfull \hbox (badness 1661) in paragraph at lines 2146--2153
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

Underfull \hbox (badness 1990) in paragraph at lines 2163--2166
[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893]
[1894] [1895] [1896] [1897]
Underfull \hbox (badness 1430) in paragraph at lines 3144--3150
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3144--3150
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1898]
Underfull \hbox (badness 1231) in paragraph at lines 3188--3194
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
[1910]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                   [1911] [1912] [1913]
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
[1925]
Underfull \hbox (badness 1371) in paragraph at lines 4902--4904
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1926] [1927]
Underfull \hbox (badness 1502) in paragraph at lines 4991--4996
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 4991--4996
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1928] [1929]
Underfull \hbox (badness 10000) in paragraph at lines 5153--5162
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1930] [1931]
Underfull \hbox (badness 3118) in paragraph at lines 5269--5271
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1932] [1933]
Underfull \hbox (badness 1348) in paragraph at lines 5405--5410
[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

Underfull \hbox (badness 3884) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

Underfull \hbox (badness 1466) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

Underfull \hbox (badness 10000) in paragraph at lines 5431--5435
[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 5431--5435
\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1934]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1935] [1936]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5625
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947]
[1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6783
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

Underfull \hbox (badness 2310) in paragraph at lines 6786--6791
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1956] [1957] [1958]
Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
[1959] [1960] [1961] [1962] [1963]
Underfull \hbox (badness 1789) in paragraph at lines 7324--7326
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973]
Underfull \vbox (badness 2401) has occurred while \output is active [1974]
[1975] [1976]
Underfull \hbox (badness 1097) in paragraph at lines 8145--8148
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1977] [1978]
Underfull \hbox (badness 3000) in paragraph at lines 8276--8281
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 2134) in paragraph at lines 8850--8855
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997]
[1998] [1999] [2000] [2001] [2002]
Underfull \hbox (badness 10000) in paragraph at lines 9791--9793
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[2003] [2004] [2005]
Underfull \hbox (badness 10000) in paragraph at lines 9969--9973
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2006]
Underfull \hbox (badness 10000) in paragraph at lines 10000--10006
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2007]
Underfull \hbox (badness 2096) in paragraph at lines 10118--10121
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

Underfull \hbox (badness 1527) in paragraph at lines 10122--10125
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2008]
Underfull \hbox (badness 1009) in paragraph at lines 10188--10199
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2009] [2010] [2011] [2012] [2013]
Underfull \hbox (badness 2142) in paragraph at lines 10480--10484
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 10495--10498
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2014] [2015] [2016] [2017] [2018] [2019]
Underfull \hbox (badness 5970) in paragraph at lines 10864--10867
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

Underfull \hbox (badness 3449) in paragraph at lines 10875--10884
[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-

Underfull \hbox (badness 2512) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-

Underfull \hbox (badness 1824) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )

Underfull \hbox (badness 3769) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
[2020] [2021] [2022]
Underfull \hbox (badness 10000) in paragraph at lines 11043--11045
[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
[2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 10000) in paragraph at lines 11440--11443
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /

Underfull \hbox (badness 2245) in paragraph at lines 11440--11443
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037]
Underfull \hbox (badness 10000) in paragraph at lines 11964--11966
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 1052) in paragraph at lines 11967--11969
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
[2038]
Underfull \hbox (badness 10000) in paragraph at lines 12026--12029
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2039] [2040] [2041] [2042] [2043]
Underfull \hbox (badness 1454) in paragraph at lines 12329--12333
[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
[2044]
Underfull \hbox (badness 10000) in paragraph at lines 12399--12401
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g.
[2045] [2046] [2047]) [2048] (./fullrefman.ind [2049] [2050] [2051] [2052]
[2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063]
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074]
[2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085]
[2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096]
[2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10887--10889
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 10889--10891
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 
[2108]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10891--10893
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116]) (./fullrefman.aux)

Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.standardGeneric} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1
/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb
i8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2147 pages, 5679173 bytes).
Transcript written on fullrefman.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2014/05/01>
Babel <3.9l> and hyphenation patterns for 2 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/inconsolata.sty
`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28]) [29] [30] (./base-pkg.tex
Chapter 1.

Underfull \hbox (badness 4595) in paragraph at lines 40--43
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
Underfull \hbox (badness 1960) in paragraph at lines 137--145
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

Underfull \hbox (badness 1668) in paragraph at lines 148--155
[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 291--295
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
Underfull \hbox (badness 3977) in paragraph at lines 374--377
[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
Underfull \hbox (badness 2556) in paragraph at lines 504--510
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1092--1095
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
Underfull \hbox (badness 4072) in paragraph at lines 1300--1306
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1801--1801
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 1986--1988
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
[47] [48] [49] [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3439--3441
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 2970) in paragraph at lines 4015--4021
[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[64] [65] [66] [67] [68] [69] [70] [71] [72]
Underfull \hbox (badness 2521) in paragraph at lines 4572--4574
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87]
[88] [89] [90] [91]
Underfull \hbox (badness 2096) in paragraph at lines 5776--5789
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[92] [93] [94] [95]
Underfull \hbox (badness 10000) in paragraph at lines 6098--6101
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[96] [97] [98]
Underfull \hbox (badness 1442) in paragraph at lines 6261--6267
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 1609) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-om-m
ended) when writ-ing it should

Underfull \hbox (badness 4954) in paragraph at lines 6261--6267
\T1/ptm/m/n/10 be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeChar("\ufe
ff", con, eos = NULL) \T1/ptm/m/n/10 or
[99]
Underfull \hbox (badness 3568) in paragraph at lines 6322--6329
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[100]
Underfull \vbox (badness 3803) has occurred while \output is active [101]
Underfull \vbox (badness 10000) has occurred while \output is active [102]
[103] [104] [105] [106] [107] [108] [109]
Underfull \hbox (badness 4595) in paragraph at lines 6927--6930
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for

Underfull \hbox (badness 2351) in paragraph at lines 6985--6988
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[110] [111] [112] [113] [114]
Underfull \hbox (badness 10000) in paragraph at lines 7230--7241
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[115]
Underfull \hbox (badness 4479) in paragraph at lines 7302--7311
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7302--7311
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1394) in paragraph at lines 8865--8870
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1052) in paragraph at lines 9202--9207
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9202--9207
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[145] [146]
Underfull \hbox (badness 10000) in paragraph at lines 9340--9344
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[147] [148] [149] [150] [151] [152]
Underfull \hbox (badness 2150) in paragraph at lines 9731--9734
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9745--9753
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[153]
Underfull \hbox (badness 2409) in paragraph at lines 9786--9793
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165]
[166] [167] [168]
Underfull \hbox (badness 4569) in paragraph at lines 10825--10829
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10825--10829
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[169] [170] [171] [172] [173] [174] [175] [176]
Underfull \hbox (badness 2698) in paragraph at lines 11369--11378
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11369--11378
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[177] [178] [179] [180] [181]
Underfull \vbox (badness 3803) has occurred while \output is active [182]
[183] [184] [185] [186] [187] [188] [189] [190]
Underfull \hbox (badness 2253) in paragraph at lines 12321--12323
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[191]
Underfull \hbox (badness 1565) in paragraph at lines 12382--12386
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[192]
Underfull \hbox (badness 10000) in paragraph at lines 12425--12427
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[193] [194]
Underfull \hbox (badness 1466) in paragraph at lines 12563--12566
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[195] [196]
Underfull \hbox (badness 10000) in paragraph at lines 12671--12675
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12682--12685
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[197] [198] [199] [200]
Underfull \hbox (badness 3965) in paragraph at lines 12929--12933
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212]
Underfull \hbox (badness 4429) in paragraph at lines 13658--13661
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[213]
Underfull \hbox (badness 10000) in paragraph at lines 13744--13746
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13750--13754
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[214]
Underfull \hbox (badness 2790) in paragraph at lines 13789--13792
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[215] [216] [217] [218] [219] [220] [221] [222] [223]
Underfull \hbox (badness 2452) in paragraph at lines 14360--14364
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14360--14364
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[224] [225]
Underfull \hbox (badness 1092) in paragraph at lines 14511--14516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[226] [227] [228] [229]
Underfull \hbox (badness 6741) in paragraph at lines 14759--14763
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[230] [231] [232] [233] [234]
Underfull \hbox (badness 1867) in paragraph at lines 15065--15072
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[235] [236] [237] [238]
Underfull \vbox (badness 10000) has occurred while \output is active [239]
[240]
Underfull \hbox (badness 3679) in paragraph at lines 15431--15433
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[241] [242] [243] [244] [245] [246]
Underfull \hbox (badness 1478) in paragraph at lines 15900--15903
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1442) in paragraph at lines 16596--16598
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[259]
Underfull \hbox (badness 2452) in paragraph at lines 16688--16704
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[260] [261] [262] [263] [264] [265]
Underfull \hbox (badness 1248) in paragraph at lines 17095--17098
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[266] [267] [268] [269] [270]
Underfull \hbox (badness 4739) in paragraph at lines 17348--17350
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[271] [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282]
[283] [284] [285]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18256
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 18252--18256
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[286] [287]
Underfull \hbox (badness 1509) in paragraph at lines 18387--18394
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 18387--18394
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 18403--18408
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298]
Underfull \hbox (badness 1264) in paragraph at lines 19110--19115
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 10000) in paragraph at lines 19846--19848
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321]
[322] [323] [324] [325]
Underfull \hbox (badness 1655) in paragraph at lines 20834--20840
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[326] [327] [328]
Underfull \hbox (badness 1484) in paragraph at lines 20995--21003
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[329] [330] [331] [332]
Underfull \hbox (badness 2790) in paragraph at lines 21266--21269
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 21266--21269
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[333] [334] [335] [336]
Underfull \hbox (badness 1194) in paragraph at lines 21545--21548
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[337] [338] [339]
Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21746--21749
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352] [353] [354] [355]
Underfull \hbox (badness 1199) in paragraph at lines 22794--22800
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22794--22800
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[356] [357] [358] [359] [360] [361] [362] [363]
Underfull \hbox (badness 1038) in paragraph at lines 23328--23337
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 23338--23341
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 23357--23359
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[364]
Underfull \hbox (badness 10000) in paragraph at lines 23423--23433
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 23434--23440
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 23447--23452
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 23457--23459
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[365] [366] [367]
Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 23697--23703
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 23709--23712
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[368]
Underfull \hbox (badness 2689) in paragraph at lines 23734--23736
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23762--23765
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2735) in paragraph at lines 23772--23779
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 23772--23779
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23781--23788
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 23781--23788
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[369] [370] [371] [372] [373]
Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 24092--24096
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[374] [375] [376] [377] [378]
Underfull \hbox (badness 1748) in paragraph at lines 24413--24417
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[379] [380] [381] [382] [383] [384] [385] [386]
Underfull \hbox (badness 2726) in paragraph at lines 24907--24910
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398]
[399]
Underfull \hbox (badness 1052) in paragraph at lines 25722--25727
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
Underfull \hbox (badness 1533) in paragraph at lines 26429--26432
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422]
[423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434]
[435]
Underfull \hbox (badness 10000) in paragraph at lines 28070--28074
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 28070--28074
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[436]
Underfull \hbox (badness 6188) in paragraph at lines 28093--28095
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[437] [438] [439] [440] [441] [442] [443] [444]
Underfull \hbox (badness 1655) in paragraph at lines 28637--28639
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
Underfull \hbox (badness 10000) in paragraph at lines 29296--29299
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[456] [457] [458]
Underfull \hbox (badness 2302) in paragraph at lines 29507--29514
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 29507--29514
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[459] [460]
Underfull \hbox (badness 2261) in paragraph at lines 29660--29665
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[461]
Underfull \hbox (badness 10000) in paragraph at lines 29687--29693
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[462]
Underfull \hbox (badness 10000) in paragraph at lines 29763--29768
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474]
[475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486]
[487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498]
[499] [500] [501] [502] [503] [504] [505]
Underfull \hbox (badness 1072) in paragraph at lines 32533--32537
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 32538--32542
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 32566--32572
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 32579--32586
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[506] [507] [508] [509] [510]
Underfull \hbox (badness 10000) in paragraph at lines 32875--32881
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 32875--32881
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522]
[523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534]
[535] [536] [537]
Underfull \hbox (badness 3333) in paragraph at lines 34594--34599
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[538] [539] [540] [541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 1472) in paragraph at lines 35198--35201
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557]
Underfull \hbox (badness 2671) in paragraph at lines 35856--35859
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[558] [559] [560] [561] [562] [563]
Underfull \hbox (badness 10000) in paragraph at lines 36260--36263
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[564] [565]
Underfull \hbox (badness 10000) in paragraph at lines 36381--36385
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[566]
Underfull \hbox (badness 10000) in paragraph at lines 36443--36447
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578]
[579] [580] [581] [582] [583] [584] [585]
Underfull \hbox (badness 1990) in paragraph at lines 37654--37662
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 37654--37662
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[586] [587] [588] [589]
Underfull \hbox (badness 1515) in paragraph at lines 37926--37931
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[590] [591] [592] [593]
Underfull \hbox (badness 1917) in paragraph at lines 38156--38163
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[594] [595] [596] [597] [598] [599] [600] [601] [602]
Underfull \hbox (badness 3668) in paragraph at lines 38726--38728
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[603]
Underfull \hbox (badness 2401) in paragraph at lines 38829--38833
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[604] [605] [606]
Underfull \hbox (badness 2111) in paragraph at lines 38992--38997
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 39008--39013
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[607] [608] [609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 39436--39441
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[614]
Underfull \hbox (badness 5417) in paragraph at lines 39526--39530
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[615]
Underfull \hbox (badness 10000) in paragraph at lines 39587--39591
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[616] [617]) (./compiler-pkg.tex [618]
Chapter 2.
[619] [620] [621] [622]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634]
[635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646]
[647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658]
[659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669]
Underfull \vbox (badness 1237) has occurred while \output is active [670]
[671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682]
[683] [684] [685] [686] [687] [688] [689]
Underfull \hbox (badness 1325) in paragraph at lines 3926--3929
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net /
[690]
Underfull \vbox (badness 10000) has occurred while \output is active [691]
[692] [693] [694]
Underfull \vbox (badness 10000) has occurred while \output is active [695]
Underfull \vbox (badness 10000) has occurred while \output is active [696]
[697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704]
Chapter 4.
[705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716]
[717] [718] [719] [720] [721]
Underfull \hbox (badness 5175) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[722] [723] [724]
Underfull \hbox (badness 1852) in paragraph at lines 1247--1250
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[725] [726] [727]
Underfull \hbox (badness 1490) in paragraph at lines 1453--1458
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[728]
Underfull \hbox (badness 2698) in paragraph at lines 1507--1510
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[729]
Underfull \hbox (badness 10000) in paragraph at lines 1576--1580
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[730] [731] [732] [733] [734]
Underfull \hbox (badness 1325) in paragraph at lines 1859--1869
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[735]
Underfull \hbox (badness 10000) in paragraph at lines 1964--1966
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[736] [737] [738]
Underfull \hbox (badness 6758) in paragraph at lines 2124--2127
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[739] [740] [741] [742] [743] [744] [745] [746]
Underfull \hbox (badness 10000) in paragraph at lines 2641--2642

[747] [748] [749] [750] [751] [752] [753]
Underfull \hbox (badness 1152) in paragraph at lines 3079--3081
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[754] [755] [756] [757] [758]
Underfull \hbox (badness 2856) in paragraph at lines 3400--3403
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3414--3416
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[759] [760]
Underfull \hbox (badness 1173) in paragraph at lines 3530--3540
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[761] [762] [763] [764] [765] [766] [767]
Underfull \vbox (badness 10000) has occurred while \output is active [768]
[769]
Underfull \vbox (badness 3803) has occurred while \output is active [770]
[771]
Underfull \hbox (badness 1067) in paragraph at lines 4230--4237
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[772] [773]
Underfull \hbox (badness 5231) in paragraph at lines 4391--4393
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[774]
Underfull \hbox (badness 1789) in paragraph at lines 4468--4470
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[775]
Underfull \hbox (badness 1377) in paragraph at lines 4518--4523
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[776]
Underfull \hbox (badness 2671) in paragraph at lines 4545--4553
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4594--4601
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4602--4611
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4612--4614
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[777] [778]
Underfull \hbox (badness 1057) in paragraph at lines 4723--4728
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[779]
Underfull \hbox (badness 7344) in paragraph at lines 4783--4785
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[780] [781]
Underfull \hbox (badness 2035) in paragraph at lines 4907--4916
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4907--4916
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[782]
Underfull \hbox (badness 6775) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4975--4983
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

Underfull \hbox (badness 7344) in paragraph at lines 4994--4996
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[783] [784] [785]
Underfull \hbox (badness 1546) in paragraph at lines 5114--5122
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[786]
Underfull \hbox (badness 1648) in paragraph at lines 5191--5195
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 10000) in paragraph at lines 5613--5616
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[794]
Underfull \vbox (badness 3803) has occurred while \output is active [795]
[796] [797] [798] [799]
Underfull \hbox (badness 1189) in paragraph at lines 6009--6011
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[800] [801]
Underfull \hbox (badness 10000) in paragraph at lines 6107--6109
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[802] [803] [804] [805]
Underfull \hbox (badness 3780) in paragraph at lines 6398--6404
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[806] [807] [808]
Underfull \hbox (badness 2680) in paragraph at lines 6594--6596
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[809] [810] [811]) (./graphics-pkg.tex [812]
Chapter 5.
[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[824] [825] [826] [827]
Underfull \vbox (badness 3803) has occurred while \output is active [828]
[829] [830] [831] [832]
Underfull \hbox (badness 4634) in paragraph at lines 1246--1249
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844]
[845] [846] [847] [848] [849]
Underfull \hbox (badness 1009) in paragraph at lines 2277--2284
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861]
[862] [863] [864] [865] [866] [867] [868] [869] [870] [871]
Underfull \vbox (badness 3803) has occurred while \output is active [872]
Underfull \vbox (badness 10000) has occurred while \output is active [873]
[874] [875] [876]
Underfull \hbox (badness 1867) in paragraph at lines 3903--3907
[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[877] [878] [879] [880] [881] [882] [883] [884]
Underfull \hbox (badness 1924) in paragraph at lines 4354--4359
[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain

Underfull \hbox (badness 2529) in paragraph at lines 4383--4386
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[885] [886] [887] [888] [889]
Underfull \hbox (badness 10000) in paragraph at lines 4727--4733
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

Underfull \hbox (badness 5908) in paragraph at lines 4727--4733
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[890] [891]
Underfull \hbox (badness 10000) in paragraph at lines 4857--4860


</<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf, id=21
687, 289.08pt x 289.08pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>
[892 </<<PKGBUILDDIR>>/library/graphics/help/figures/mai.pdf>]

Underfull \hbox (badness 10000) in paragraph at lines 4918--4920


</<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf, id=21
700, 259.97125pt x 332.24126pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>
[893 </<<PKGBUILDDIR>>/library/graphics/help/figures/oma.pdf>]
[894] [895]
Underfull \hbox (badness 10000) in paragraph at lines 5111--5113
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[896] [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907]
[908] [909] [910] [911] [912] [913] [914] [915] [916] [917]
</<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf, id=22
102, 361.35pt x 50.1875pt>
<use /<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516
[][] 
[918 </<<PKGBUILDDIR>>/library/graphics/help/figures/pch.pdf>]
[919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929]
Underfull \hbox (badness 1048) in paragraph at lines 7224--7229
\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[930] [931]
Underfull \hbox (badness 1038) in paragraph at lines 7340--7343
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950] [951] [952]
Underfull \hbox (badness 6691) in paragraph at lines 8558--8561
[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

Underfull \hbox (badness 2799) in paragraph at lines 8561--8563
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[953]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8643 \HeaderA{units}{Graphical Units}{units}
                                               [954] [955] [956] [957] [958])
(./grid-pkg.tex
Chapter 6.

Underfull \vbox (badness 10000) has occurred while \output is active [959]
[960] [961] [962] [963] [964]
Underfull \hbox (badness 2680) in paragraph at lines 390--393
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[965] [966] [967] [968] [969] [970] [971] [972] [973] [974]
Underfull \hbox (badness 4279) in paragraph at lines 972--981
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986]
[987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998]
[999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009]
[1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020]
[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031]
Underfull \hbox (badness 1067) in paragraph at lines 4342--4345
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1032] [1033] [1034] [1035]
Underfull \hbox (badness 7256) in paragraph at lines 4585--4587
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046]
[1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056]
Underfull \hbox (badness 10000) in paragraph at lines 5856--5862
\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064]
Underfull \hbox (badness 7649) in paragraph at lines 6326--6329
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1065] [1066] [1067] [1068]) (./methods-pkg.tex
Chapter 7.
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
[1080] [1081] [1082] [1083] [1084]
Underfull \vbox (badness 2277) has occurred while \output is active [1085]
[1086] [1087] [1088]
Underfull \hbox (badness 2237) in paragraph at lines 1432--1434
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097]
Underfull \hbox (badness 10000) in paragraph at lines 2028--2033
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 2028--2033
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105]
Underfull \hbox (badness 10000) in paragraph at lines 2628--2631
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1106] [1107]
Underfull \hbox (badness 1132) in paragraph at lines 2768--2772
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1108]
Underfull \hbox (badness 1033) in paragraph at lines 2800--2805
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1109] [1110] [1111] [1112] [1113] [1114] [1115]
Underfull \hbox (badness 1102) in paragraph at lines 3308--3310
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1116] [1117] [1118] [1119] [1120]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

Underfull \hbox (badness 10000) in paragraph at lines 3645--3654
[]\T1/ptm/m/n/10 The
[1121] [1122] [1123] [1124] [1125] [1126]
Underfull \vbox (badness 10000) has occurred while \output is active [1127]
[1128] [1129] [1130] [1131] [1132] [1133] [1134]
Underfull \hbox (badness 1436) in paragraph at lines 4550--4553
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

Underfull \hbox (badness 1769) in paragraph at lines 4579--4585
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4579--4585
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1135] [1136] [1137] [1138] [1139] [1140]
Underfull \vbox (badness 2111) has occurred while \output is active [1141]
[1142]
Underfull \vbox (badness 10000) has occurred while \output is active [1143]
[1144]
Underfull \hbox (badness 1092) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

Underfull \hbox (badness 4036) in paragraph at lines 5299--5302
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1145] [1146] [1147] [1148] [1149]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1150] [1151] [1152] [1153]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161]
Underfull \vbox (badness 10000) has occurred while \output is active [1162]
[1163]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6703 \aliasA{S4}{S3Part}{S4}
                               [1164] [1165] [1166] [1167]pdfTeX warning (ext4)
: destination with the same identifier (name{Rfn.Complex}) has been already use
d, duplicate ignored
<to be read again> 
                   \relax 
l.6979 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.6982 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored

<to be read again> 
                   \relax 
l.6984 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.6985 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1168]
Underfull \hbox (badness 2050) in paragraph at lines 7046--7050
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1169] [1170] [1171]
Underfull \hbox (badness 1286) in paragraph at lines 7231--7233
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193]
Underfull \vbox (badness 10000) has occurred while \output is active [1194]
[1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204]
Underfull \hbox (badness 2894) in paragraph at lines 9564--9568
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1205]
Underfull \hbox (badness 1852) in paragraph at lines 9643--9647
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1206] [1207] [1208] [1209]) (./parallel-pkg.tex [1210]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221]
[1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229]
Underfull \hbox (badness 3386) in paragraph at lines 1236--1239
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1230] [1231] [1232]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247]) (./stats-pkg.tex [1248]
Chapter 10.
[1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259]
[1260] [1261]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1270] [1271] [1272]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283]
Underfull \hbox (badness 3965) in paragraph at lines 2163--2165
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1284] [1285] [1286] [1287] [1288]
Underfull \hbox (badness 3965) in paragraph at lines 2495--2497
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299]
[1300] [1301]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312]
[1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1331] [1332] [1333] [1334]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1335] [1336] [1337]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1346] [1347] [1348] [1349]
Underfull \hbox (badness 7081) in paragraph at lines 6285--6288
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6289--6291
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1350]
Underfull \vbox (badness 3803) has occurred while \output is active [1351]
[1352] [1353] [1354]
Underfull \vbox (badness 10000) has occurred while \output is active [1355]
[1356] [1357] [1358] [1359] [1360] [1361] [1362]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1363] [1364]
Underfull \hbox (badness 10000) in paragraph at lines 7229--7232
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386]
[1387]
Underfull \hbox (badness 2626) in paragraph at lines 8704--8707
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1388] [1389]
Underfull \hbox (badness 2503) in paragraph at lines 8804--8808
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1390] [1391] [1392] [1393] [1394]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9138--9140
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405]
Underfull \hbox (badness 1019) in paragraph at lines 9804--9807
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1406] [1407] [1408]
Underfull \hbox (badness 4518) in paragraph at lines 10064--10069
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1409] [1410] [1411] [1412] [1413]
Underfull \hbox (badness 2142) in paragraph at lines 10406--10409
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1414]
Underfull \hbox (badness 1253) in paragraph at lines 10425--10428
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1415]
Underfull \hbox (badness 1708) in paragraph at lines 10487--10490
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1416] [1417] [1418] [1419] [1420]
Underfull \hbox (badness 1694) in paragraph at lines 10856--10859
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11322 \aliasA{hat}{influence.measures}{hat}
                                              [1429] [1430]
Underfull \hbox (badness 1484) in paragraph at lines 11444--11446
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 4441) in paragraph at lines 11997--11999
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12004--12006
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 2894) in paragraph at lines 12338--12342
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
Underfull \hbox (badness 4518) in paragraph at lines 13020--13025
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 4518) in paragraph at lines 13667--13672
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486]
Underfull \hbox (badness 2503) in paragraph at lines 14866--14870
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1418) in paragraph at lines 15375--15381
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518]
Underfull \vbox (badness 3803) has occurred while \output is active [1519]
[1520] [1521]
Underfull \hbox (badness 2359) in paragraph at lines 17001--17003
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1522]
Underfull \vbox (badness 10000) has occurred while \output is active [1523]
Underfull \vbox (badness 10000) has occurred while \output is active [1524]
[1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535]
[1536]
Underfull \hbox (badness 1377) in paragraph at lines 17912--17917
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17917--17920
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 17930--17934
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1537]
Underfull \hbox (badness 2662) in paragraph at lines 17938--17942
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1538] [1539]
Underfull \vbox (badness 3803) has occurred while \output is active [1540]
[1541] [1542] [1543] [1544] [1545] [1546] [1547]
Underfull \hbox (badness 1337) in paragraph at lines 18554--18557
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558]
[1559] [1560]
Underfull \hbox (badness 5563) in paragraph at lines 19280--19282
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1561] [1562] [1563] [1564] [1565] [1566]
Underfull \hbox (badness 2503) in paragraph at lines 19649--19652
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1567]
Underfull \hbox (badness 10000) in paragraph at lines 19676--19678
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 20652--20658
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594]
[1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605]
Underfull \hbox (badness 1337) in paragraph at lines 21967--21973
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616]
[1617] [1618]
Underfull \hbox (badness 10000) in paragraph at lines 22760--22763
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627]
Underfull \hbox (badness 10000) in paragraph at lines 23335--23338
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1628]
Underfull \hbox (badness 3690) in paragraph at lines 23386--23390
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1629] [1630] [1631] [1632] [1633]
Underfull \hbox (badness 7667) in paragraph at lines 23652--23654
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1634] [1635] [1636]
Underfull \hbox (badness 3439) in paragraph at lines 23855--23861
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645]
Underfull \hbox (badness 10000) in paragraph at lines 24403--24408
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656]
[1657] [1658] [1659] [1660]
Underfull \vbox (badness 3803) has occurred while \output is active [1661]
[1662]
Underfull \hbox (badness 3514) in paragraph at lines 25419--25424
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1663]
Underfull \hbox (badness 3514) in paragraph at lines 25481--25486
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1664]
Underfull \hbox (badness 3514) in paragraph at lines 25538--25543
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1665]
Underfull \hbox (badness 3514) in paragraph at lines 25599--25605
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1666] [1667] [1668] [1669]
Underfull \hbox (badness 3514) in paragraph at lines 25812--25817
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 25868--25873
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1670]
Underfull \hbox (badness 3514) in paragraph at lines 25925--25930
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1671]
Underfull \hbox (badness 3514) in paragraph at lines 25980--25985
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1672] [1673]
Underfull \hbox (badness 6691) in paragraph at lines 26049--26054
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681]
Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26571--26574
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691]
Underfull \hbox (badness 5431) in paragraph at lines 27177--27179
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1692] [1693] [1694] [1695]
Underfull \hbox (badness 5431) in paragraph at lines 27387--27390
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1696] [1697] [1698] [1699] [1700]
Underfull \hbox (badness 1337) in paragraph at lines 27699--27703
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 27816--27819
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1703] [1704] [1705]
Underfull \hbox (badness 1616) in paragraph at lines 27999--28002
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716]
[1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724]
Underfull \hbox (badness 10000) in paragraph at lines 29121--29125
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1725] [1726] [1727]
Underfull \vbox (badness 10000) has occurred while \output is active [1728]
[1729] [1730]
Underfull \hbox (badness 1337) in paragraph at lines 29484--29488
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738]
Underfull \hbox (badness 1337) in paragraph at lines 29968--29972
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1739] [1740]
Underfull \hbox (badness 5161) in paragraph at lines 30061--30063
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 30425--30430
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1746] [1747] [1748]) (./stats4-pkg.tex
Chapter 11.
[1749] [1750] [1751] [1752] [1753] [1754]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1755] [1756] [1757]
[1758]) (./tcltk-pkg.tex
Chapter 12.
[1759] [1760] [1761] [1762] [1763] [1764] [1765]
Underfull \vbox (badness 10000) has occurred while \output is active [1766]
Underfull \vbox (badness 10000) has occurred while \output is active [1767]
Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1768] [1769] [1770] [1771]
Underfull \vbox (badness 10000) has occurred while \output is active [1772]
[1773] [1774] [1775] [1776] [1777] [1778]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1779]) (./tools-pkg.tex [1780]
Chapter 13.
[1781]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1782]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1783] [1784]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1785] [1786]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1787] [1788] [1789] [1790] [1791] [1792] [1793]
Underfull \vbox (badness 10000) has occurred while \output is active [1794]
[1795] [1796] [1797]
Underfull \hbox (badness 1635) in paragraph at lines 1047--1049
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1798]
Underfull \hbox (badness 4441) in paragraph at lines 1116--1124
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1799]
Underfull \hbox (badness 1014) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 10000) in paragraph at lines 1165--1168
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1165--1168
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1800] [1801]
Underfull \hbox (badness 10000) in paragraph at lines 1293--1295
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1802] [1803] [1804]
Underfull \hbox (badness 7981) in paragraph at lines 1463--1467
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1805] [1806] [1807] [1808] [1809] [1810]
Underfull \hbox (badness 5726) in paragraph at lines 1789--1794
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1789--1794
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 7981) in paragraph at lines 2180--2186
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1817] [1818] [1819] [1820]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2434.

[1821] [1822] [1823] [1824]
Underfull \hbox (badness 1424) in paragraph at lines 2671--2673
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835]
[1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 1838) in paragraph at lines 3694--3700
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 3694--3700
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1842]
Underfull \hbox (badness 5726) in paragraph at lines 3774--3779
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3774--3779
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1843] [1844]
Underfull \hbox (badness 1688) in paragraph at lines 3916--3928
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1845] [1846] [1847] [1848]) (./utils-pkg.tex
Chapter 14.
[1849]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1850] [1851]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1852] [1853] [1854] [1855] [1856] [1857]
Underfull \hbox (badness 10000) in paragraph at lines 536--542
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 536--542
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1858]
Underfull \hbox (badness 5847) in paragraph at lines 647--653
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 647--653
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1859]
Underfull \hbox (badness 3861) in paragraph at lines 715--720
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
Underfull \hbox (badness 1371) in paragraph at lines 1298--1300
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1870] [1871] [1872] [1873] [1874] [1875]
Underfull \hbox (badness 2057) in paragraph at lines 1747--1749
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 1841--1843
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1878]
Underfull \hbox (badness 5189) in paragraph at lines 1931--1933
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1879] [1880] [1881] [1882]
Underfull \hbox (badness 1661) in paragraph at lines 2146--2153
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

Underfull \hbox (badness 1990) in paragraph at lines 2163--2166
[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] [1893]
[1894] [1895] [1896] [1897]
Underfull \hbox (badness 1430) in paragraph at lines 3144--3150
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 3144--3150
\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1898]
Underfull \hbox (badness 1231) in paragraph at lines 3188--3194
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909]
[1910]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.3954 ...mat Unordered and Ordered Lists}{format}
                                                   [1911] [1912] [1913]
[1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924]
[1925]
Underfull \hbox (badness 1371) in paragraph at lines 4902--4904
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1926] [1927]
Underfull \hbox (badness 1502) in paragraph at lines 4991--4996
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 4991--4996
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1928] [1929]
Underfull \hbox (badness 10000) in paragraph at lines 5153--5162
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1930] [1931]
Underfull \hbox (badness 3118) in paragraph at lines 5269--5271
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1932] [1933]
Underfull \hbox (badness 1348) in paragraph at lines 5405--5410
[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

Underfull \hbox (badness 3884) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

Underfull \hbox (badness 1466) in paragraph at lines 5405--5410
\T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

Underfull \hbox (badness 10000) in paragraph at lines 5431--5435
[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 5431--5435
\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1934]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1935] [1936]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5625
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947]
[1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6783
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

Underfull \hbox (badness 2310) in paragraph at lines 6786--6791
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1956] [1957] [1958]
Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

Underfull \hbox (badness 10000) in paragraph at lines 6943--6946
[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
[1959] [1960] [1961] [1962] [1963]
Underfull \hbox (badness 1789) in paragraph at lines 7324--7326
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973]
Underfull \vbox (badness 2401) has occurred while \output is active [1974]
[1975] [1976]
Underfull \hbox (badness 1097) in paragraph at lines 8145--8148
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1977] [1978]
Underfull \hbox (badness 3000) in paragraph at lines 8276--8281
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]
Underfull \hbox (badness 2134) in paragraph at lines 8850--8855
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997]
[1998] [1999] [2000] [2001] [2002]
Underfull \hbox (badness 10000) in paragraph at lines 9791--9793
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[2003] [2004] [2005]
Underfull \hbox (badness 10000) in paragraph at lines 9969--9973
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2006]
Underfull \hbox (badness 10000) in paragraph at lines 10000--10006
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2007]
Underfull \hbox (badness 2096) in paragraph at lines 10118--10121
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

Underfull \hbox (badness 1527) in paragraph at lines 10122--10125
[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2008]
Underfull \hbox (badness 1009) in paragraph at lines 10188--10199
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2009] [2010] [2011] [2012] [2013]
Underfull \hbox (badness 2142) in paragraph at lines 10480--10484
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

Underfull \hbox (badness 2635) in paragraph at lines 10495--10498
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2014] [2015] [2016] [2017] [2018] [2019]
Underfull \hbox (badness 5970) in paragraph at lines 10864--10867
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

Underfull \hbox (badness 3449) in paragraph at lines 10875--10884
[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-

Underfull \hbox (badness 2512) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-

Underfull \hbox (badness 1824) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )

Underfull \hbox (badness 3769) in paragraph at lines 10875--10884
\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
[2020] [2021] [2022]
Underfull \hbox (badness 10000) in paragraph at lines 11043--11045
[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
[2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 10000) in paragraph at lines 11440--11443
[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /

Underfull \hbox (badness 2245) in paragraph at lines 11440--11443
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037]
Underfull \hbox (badness 10000) in paragraph at lines 11964--11966
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 1052) in paragraph at lines 11967--11969
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see

Underfull \hbox (badness 10000) in paragraph at lines 11997--12002
[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
[2038]
Underfull \hbox (badness 10000) in paragraph at lines 12026--12029
[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2039] [2040] [2041] [2042] [2043]
Underfull \hbox (badness 1454) in paragraph at lines 12329--12333
[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
[2044]
Underfull \hbox (badness 10000) in paragraph at lines 12399--12401
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g.
[2045] [2046] [2047]) [2048] (./fullrefman.ind [2049] [2050] [2051] [2052]
[2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063]
[2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074]
[2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085]
[2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096]
[2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10887--10889
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 10889--10891
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 
[2108]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10891--10893
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116]) (./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed 
one

pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.standardGeneric} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/
texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis
t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/inconsolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1
/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb
i8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2147 pages, 5678841 bytes).
Transcript written on fullrefman.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] [-1] Chapter 1
Cross reference values unknown; you must run TeX again. Chapter 2 [1] [2]
[3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16]
[17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25]
[26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
[39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] )</usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr
8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (48 pages, 363146 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc)
Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
[34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44]
Chapter 10 [45] [46] )</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (50 pages, 379214 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc)
Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
[34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44]
Chapter 10 [45] [46] )</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (50 pages, 379214 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13]
Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
[]@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin
32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1820--1820
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
Underfull \hbox (badness 6842) in paragraph at lines 2007--2016
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
Overfull \hbox (50.73642pt too wide) in paragraph at lines 2095--2105
[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27] [28]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2368--2368
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 2388--2388
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2389--2389
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 3620--3620
 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
Overfull \hbox (66.67995pt too wide) in paragraph at lines 4728--4728
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4838--4843
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

Overfull \hbox (43.6852pt too wide) in paragraph at lines 4861--4861
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 4866--4866
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents
/Home[] 
[61] [62]
Underfull \hbox (badness 10000) in paragraph at lines 5019--5025
@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5028--5028
 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5035--5035
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (Concept index) [73]
(Environment variable index) [74] [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (78 pages, 443876 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
[]@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin
32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1820--1820
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
Underfull \hbox (badness 6842) in paragraph at lines 2007--2016
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
Overfull \hbox (50.73642pt too wide) in paragraph at lines 2095--2105
[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2368--2368
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2388--2388
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2389--2389
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 3620--3620
 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
Overfull \hbox (66.67995pt too wide) in paragraph at lines 4728--4728
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4838--4843
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

Overfull \hbox (43.6852pt too wide) in paragraph at lines 4861--4861
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 4866--4866
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents
/Home[] 
[61] [62]
Underfull \hbox (badness 10000) in paragraph at lines 5019--5025
@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5028--5028
 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5035--5035
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (81 pages, 491204 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
[]@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin
32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1820--1820
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
Underfull \hbox (badness 6842) in paragraph at lines 2007--2016
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
Overfull \hbox (50.73642pt too wide) in paragraph at lines 2095--2105
[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2368--2368
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2388--2388
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2389--2389
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 3620--3620
 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
Overfull \hbox (66.67995pt too wide) in paragraph at lines 4728--4728
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4838--4843
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

Overfull \hbox (43.6852pt too wide) in paragraph at lines 4861--4861
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 4866--4866
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents
/Home[] 
[61] [62]
Underfull \hbox (badness 10000) in paragraph at lines 5019--5025
@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5028--5028
 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5035--5035
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (81 pages, 491223 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] [13]
Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
[]@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin
32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in

Underfull \hbox (badness 10000) in paragraph at lines 1251--1255
@textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl
l[] @textrm and in-stall it un-der @textttsl R_
[14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] Chapter 6 [21]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1820--1820
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[22] [23]
Underfull \hbox (badness 6842) in paragraph at lines 2007--2016
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[24]
Overfull \hbox (50.73642pt too wide) in paragraph at lines 2095--2105
[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[25] [26] [27]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2368--2368
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[28]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2388--2388
 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 2389--2389
 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] [35] Appendix A
[36] [37] [38] [39] [40] [41] [42] [43] [44]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 3620--3620
 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54]
[55] [56] [57] [58]
Overfull \hbox (66.67995pt too wide) in paragraph at lines 4728--4728
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4838--4843
[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

Overfull \hbox (43.6852pt too wide) in paragraph at lines 4861--4861
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con
tents/Home[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 4866--4866
 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents
/Home[] 
[61] [62]
Underfull \hbox (badness 10000) in paragraph at lines 5019--5025
@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as
[63]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5028--5028
 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 5035--5035
 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[64] [65] [66] [67] [68] Appendix D [69] [70] [71]
(Function and variable index) [72] (./R-admin.vrs) (Concept index) [73]
(./R-admin.cps) (Environment variable index) [74] (./R-admin.ens) [75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (81 pages, 491223 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements)
Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89
 [][]@textbf dataframes2xls[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100
 [][]@textbf RPostgreSQL[][]| 

Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107
 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A
[31] (Function and variable index) [32] (Concept index) [33] [34] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (37 pages, 269750 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89
 [][]@textbf dataframes2xls[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100
 [][]@textbf RPostgreSQL[][]| 

Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107
 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (39 pages, 310083 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89
 [][]@textbf dataframes2xls[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100
 [][]@textbf RPostgreSQL[][]| 

Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107
 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12]
Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5
[22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29]
Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs
[33]) (Concept index) [34] (./R-data.cps) [35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (39 pages, 310108 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
Underfull \hbox (badness 10000) in paragraph at lines 1701--1704
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

Overfull \hbox (14.94176pt too wide) in paragraph at lines 1745--1745
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2023--2023
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2025--2025
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2164--2164
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2375--2377
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4124--4124
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4398--4398
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5627
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6499--6499
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 6872--6872
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 6912--6912
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 7016--7016
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7046--7055
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7411--7415
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
Overfull \hbox (152.91026pt too wide) in paragraph at lines 7444--7444
 []@texttt -fsanitize=integer-divide-by-zero,null,return,shift,signed-integer-o
verflow,unreachable,vla-bound[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 7516--7516
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 7566--7566
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 7569--7569
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[99]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 7648--7648
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 8823--8823
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9596--9596
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[126]
Underfull \hbox (badness 10000) in paragraph at lines 9657--9659
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10285--10285
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[135]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10290--10290
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10345--10345
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10357--10357
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[136] [137] [138]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10582--10582
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[139]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 10664--10664
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[140]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10747--10747
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12710--12710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[166]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 12742--12742
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 12758--12758
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[167] [168] [169]
Underfull \hbox (badness 10000) in paragraph at lines 13001--13008
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
Underfull \hbox (badness 10000) in paragraph at lines 13389--13393
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [176] (Concept index) [177] [178]
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+3/600 --dpi 603 ecrm1095
mkdir: cannot create directory '././sbuild-nonexistent': Permission denied
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+3/600; nonstopmode; input ecrm1095
This is METAFONT, Version 2.7182818 (TeX Live 2015/dev/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1095.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.07599pt)
Font metrics written on ecrm1095.tfm.
Output written on ecrm1095.603gf (256 characters, 55528 bytes).
Transcript written on ecrm1095.log.
mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/ecrm1095.603pk: successfully generated.
 )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (181 pages, 804986 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
[16] [17] [18] [19] [20] [21]
Underfull \hbox (badness 10000) in paragraph at lines 1701--1704
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

Overfull \hbox (14.94176pt too wide) in paragraph at lines 1745--1745
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2023--2023
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2025--2025
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2164--2164
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2375--2377
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4124--4124
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4398--4398
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5627
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6499--6499
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 6872--6872
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 6912--6912
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 7016--7016
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7046--7055
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7411--7415
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
Overfull \hbox (152.91026pt too wide) in paragraph at lines 7444--7444
 []@texttt -fsanitize=integer-divide-by-zero,null,return,shift,signed-integer-o
verflow,unreachable,vla-bound[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 7516--7516
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 7566--7566
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 7569--7569
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[99]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 7648--7648
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 8823--8823
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9596--9596
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[126]
Underfull \hbox (badness 10000) in paragraph at lines 9657--9659
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10285--10285
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[135]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10290--10290
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10345--10345
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10357--10357
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[136] [137] [138]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10582--10582
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[139]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 10664--10664
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[140]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10747--10747
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12710--12710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[166]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 12742--12742
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 12758--12758
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[167] [168] [169]
Underfull \hbox (badness 10000) in paragraph at lines 13001--13008
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
Underfull \hbox (badness 10000) in paragraph at lines 13389--13393
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [176] (./R-exts.vrs [177] [178]) [179]
Overfull \vbox (1.73251pt too high) has occurred while \output is active
Overfull \vbox (1.73251pt too high) has occurred while \output is active
(Concept index) [180] (./R-exts.cps [181]) [182] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (189 pages, 866791 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
[16] [17] [18] [19] [20] [21]
Underfull \hbox (badness 10000) in paragraph at lines 1701--1704
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

Overfull \hbox (14.94176pt too wide) in paragraph at lines 1745--1745
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[22] [23] [24] [25]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2023--2023
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2025--2025
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[26] [27]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2164--2164
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[28] [29] [30]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2375--2377
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
[46] [47] [48] [49] [50] [51] [52]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4124--4124
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[53] [54] [55]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4398--4398
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[56] [57] [58] Chapter 2 [59] [60] [61] [62] [63] [64] [65] [66] [67] [68]
[69] [70] [71]
Underfull \hbox (badness 10000) in paragraph at lines 5620--5627
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[72] [73] [74] [75] [76] [77] Chapter 3 [78] [79] [80] [81] [82] [83]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6499--6499
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[84] [85] [86] Chapter 4 [87] [88] [89]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 6872--6872
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[90]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 6912--6912
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[91]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 7016--7016
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7046--7055
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[92] [93] [94] [95] [96]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7411--7415
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm .
[97]
Overfull \hbox (152.91026pt too wide) in paragraph at lines 7444--7444
 []@texttt -fsanitize=integer-divide-by-zero,null,return,shift,signed-integer-o
verflow,unreachable,vla-bound[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 7516--7516
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[98]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 7566--7566
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 7569--7569
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[99]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 7648--7648
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[100] [101] [102] Chapter 5 [103] [104] [105] [106] [107] [108] [109] [110]
[111] [112] [113] [114] [115]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 8823--8823
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9596--9596
 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[126]
Underfull \hbox (badness 10000) in paragraph at lines 9657--9659
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[127] [128] [129] [130] [131] [132] [133] [134]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10285--10285
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[135]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10290--10290
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10345--10345
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10357--10357
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[136] [137] [138]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10582--10582
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[139]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 10664--10664
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[140]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10747--10747
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[141] Chapter 6 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157] [158] [159] [160] Chapter 7 [161] [162]
Chapter 8 [163] [164] [165]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 12710--12710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[166]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 12742--12742
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 12758--12758
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[167] [168] [169]
Underfull \hbox (badness 10000) in paragraph at lines 13001--13008
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[170] [171] [172] [173] [174] [175]
Underfull \hbox (badness 10000) in paragraph at lines 13389--13393
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [176] (./R-exts.vrs [177] [178]) [179]
Overfull \vbox (1.73251pt too high) has occurred while \output is active
Overfull \vbox (1.73251pt too high) has occurred while \output is active
(Concept index) [180] (./R-exts.cps [181]) [182] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (189 pages, 866780 bytes).
Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5740--5740
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
Underfull \hbox (badness 10000) in paragraph at lines 6446--6451
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101]
Appendix F [102] [103] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (106 pages, 583660 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5740--5740
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
Underfull \hbox (badness 10000) in paragraph at lines 6446--6451
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl9.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (112 pages, 633574 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5740--5740
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
Underfull \hbox (badness 10000) in paragraph at lines 6446--6451
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 6647--6652
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx
7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl9.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (112 pages, 633559 bytes).
Transcript written on R-intro.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] Chapter 2 [24] [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3983--3991
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (Concept index) [64] [65] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (68 pages, 380876 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3983--3991
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (./R-ints.vrs [64])
(Concept index) [65] (./R-ints.cps) [66] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
t12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb
>
Output written on R-ints.pdf (71 pages, 429218 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3612--3621
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54]
Underfull \hbox (badness 10000) in paragraph at lines 3983--3991
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] (./R-ints.vrs [64])
(Concept index) [65] (./R-ints.cps) [66] )
(see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
knappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
t12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb
>
Output written on R-ints.pdf (71 pages, 429220 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (Concept Index) [60] Appendix A [61]
[62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 331190 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 380241 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 380252 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr  \
		infodir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
you need to adjust /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/*.gz
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.6% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 71.1% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info.gz:	 66.6% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.7% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.7% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir		\
	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir.old	
removed '/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /<<PKGBUILDDIR>>/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 1880
-rw-rw-r-- 1 root root 1185266 Mar 19 17:52 libRmath.a
-rwxrwxr-x 1 root root  737100 Mar 19 17:52 libRmath.so
drwxr-xr-x 1 root root      22 Mar 19 18:11 pkgconfig
'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/<<PKGBUILDDIR>>/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc; \
	cat /<<PKGBUILDDIR>>/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
dh_bash-completion	
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /<<PKGBUILDDIR>>/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /<<PKGBUILDDIR>>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS 
dh_strip	--sourcedir=/<<PKGBUILDDIR>>/debian/r-base-core --dbg-package=r-base-core-dbg
Unknown option: sourcedir
dh_strip 	--sourcedir=/<<PKGBUILDDIR>>/debian/r-mathlib
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.5.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.5.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libSM.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libICE.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/lapack.so debian/r-base-core/usr/lib/R/library/stats/libs/stats.so debian/r-base-core/usr/lib/R/lib/libR.so were not linked against libgfortran.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so were not linked against libXext.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/grDevices/libs/cairo.so debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libglib-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXss.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-mathlib/usr/lib/libRmath.so.1.0.0 was not linked against libgomp.so.1 (it uses none of the library's symbols)
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `r-mathlib' in `../r-mathlib_3.1.1-1+deb8u1_armhf.deb'.
dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_3.1.1-1+deb8u1_armhf.deb'.
dpkg-deb: building package `r-base-core' in `../r-base-core_3.1.1-1+deb8u1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-base_3.1.1-1+deb8u1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-base-3.1.1
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-03-19T18:14:33Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-base_3.1.1-1+deb8u1_armhf.changes:
------------------------------------

Format: 1.8
Date: Tue, 14 Mar 2017 20:09:08 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: armhf
Version: 3.1.1-1+deb8u1
Distribution: jessie-staging
Urgency: high
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Changes:
 r-base (3.1.1-1+deb8u1) jessie-security; urgency=high
 .
   * src/library/grDevices/src/devPS.c: Apply upstream commits r71664 and
     r71667 related to CVE-2016-8714 reported as TALOS-2016-0227
Checksums-Sha1:
 7526ba2508ed723841a7de36f55b2cd21d11a566 19507072 r-base-core_3.1.1-1+deb8u1_armhf.deb
 824b2359982638038574c2e7b7b446952957fe15 1156342 r-mathlib_3.1.1-1+deb8u1_armhf.deb
 0c3398f28df021899559327d0b55a8ec74e49a2e 2866408 r-base-core-dbg_3.1.1-1+deb8u1_armhf.deb
Checksums-Sha256:
 d56e42938f8aee519f4f05aeec9f7fccc972e6f5d41755a4418a9776cb9c8d82 19507072 r-base-core_3.1.1-1+deb8u1_armhf.deb
 c9e94172b948735e62a806a17090a331a17c38509d048db3f7fb58785fcc5b8f 1156342 r-mathlib_3.1.1-1+deb8u1_armhf.deb
 b019e0a0aca5073d3aa37d0810b10f0bef5eb5667e947469ed1ef0cf88b6c66d 2866408 r-base-core-dbg_3.1.1-1+deb8u1_armhf.deb
Files:
 680196aa923520657263931e232b5813 19507072 gnu-r optional r-base-core_3.1.1-1+deb8u1_armhf.deb
 7321184c3c5f0fb9195b524ca0d8f222 1156342 gnu-r optional r-mathlib_3.1.1-1+deb8u1_armhf.deb
 07c5da1e41d8298646632721b38ff2be 2866408 debug extra r-base-core-dbg_3.1.1-1+deb8u1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-base-core_3.1.1-1+deb8u1_armhf.deb
------------------------------------

 new debian package, version 2.0.
 size 19507072 bytes: control archive=29223 bytes.
     118 bytes,     6 lines      conffiles            
    2730 bytes,    44 lines      control              
   69261 bytes,   876 lines      md5sums              
    2396 bytes,    70 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
     667 bytes,    34 lines   *  preinst              #!/bin/sh
     689 bytes,    26 lines   *  prerm                #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 3.1.1-1+deb8u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 30570
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libgfortran3 (>= 4.3), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libice6 (>= 1:1.0.0), libjpeg62-turbo (>= 1.3.1), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3 (>= 1:8.35), libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libsm6, libtcl8.5 (>= 8.5.0), libtiff5 (>= 4.0.3), libtk8.5 (>= 8.5.0), libx11-6, libxext6, libxss1, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0)
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2017-03-19 18:12 ./
drwxr-xr-x root/root         0 2017-03-19 17:52 ./etc/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./etc/R/
-rw-r--r-- root/root      5845 2017-03-19 17:52 ./etc/R/Makeconf
-rw-r--r-- root/root       608 2017-03-19 18:11 ./etc/R/Renviron.site
-rw-r--r-- root/root       792 2017-03-19 18:11 ./etc/R/Rprofile.site
-rw-r--r-- root/root       640 2017-03-19 17:52 ./etc/R/ldpaths
-rw-r--r-- root/root      1159 2017-03-19 17:52 ./etc/R/repositories
drwxr-xr-x root/root         0 2017-03-19 18:11 ./etc/bash_completion.d/
-rw-r--r-- root/root     13294 2017-03-19 16:56 ./etc/bash_completion.d/R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./etc/ld.so.conf.d/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/bin/
-rwxr-xr-x root/root      8595 2017-03-19 17:52 ./usr/bin/R
-rwxr-xr-x root/root      9744 2017-03-19 18:12 ./usr/bin/Rscript
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
-rw-r--r-- root/root        46 2017-03-19 17:52 ./usr/lib/R/SVN-REVISION
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/bin/
-rwxr-xr-x root/root      1828 2017-03-19 17:52 ./usr/lib/R/bin/BATCH
-rwxr-xr-x root/root      2156 2017-03-19 17:52 ./usr/lib/R/bin/COMPILE
-rwxr-xr-x root/root       823 2017-03-19 17:52 ./usr/lib/R/bin/INSTALL
-rwxr-xr-x root/root      1433 2017-03-19 17:52 ./usr/lib/R/bin/LINK
-rwxr-xr-x root/root      8595 2017-03-19 17:52 ./usr/lib/R/bin/R
-rwxr-xr-x root/root       158 2017-03-19 17:52 ./usr/lib/R/bin/REMOVE
-rwxr-xr-x root/root      1375 2017-03-19 17:52 ./usr/lib/R/bin/Rcmd
-rwxr-xr-x root/root       312 2017-03-19 17:52 ./usr/lib/R/bin/Rd2pdf
-rwxr-xr-x root/root       359 2017-03-19 17:52 ./usr/lib/R/bin/Rdconv
-rwxr-xr-x root/root       258 2017-03-19 17:52 ./usr/lib/R/bin/Rdiff
-rwxr-xr-x root/root       310 2017-03-19 17:52 ./usr/lib/R/bin/Rprof
-rwxr-xr-x root/root      9744 2017-03-19 18:12 ./usr/lib/R/bin/Rscript
-rwxr-xr-x root/root       155 2017-03-19 17:52 ./usr/lib/R/bin/SHLIB
-rwxr-xr-x root/root       318 2017-03-19 17:52 ./usr/lib/R/bin/Stangle
-rwxr-xr-x root/root       316 2017-03-19 17:52 ./usr/lib/R/bin/Sweave
-rwxr-xr-x root/root       317 2017-03-19 17:52 ./usr/lib/R/bin/build
-rwxr-xr-x root/root       317 2017-03-19 17:52 ./usr/lib/R/bin/check
-rwxr-xr-x root/root      9459 2017-03-19 17:52 ./usr/lib/R/bin/config
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/bin/exec/
-rwxr-xr-x root/root      5580 2017-03-19 18:12 ./usr/lib/R/bin/exec/R
-rwxr-xr-x root/root      3608 2017-03-19 17:52 ./usr/lib/R/bin/f77_f2c
-rwxr-xr-x root/root     14590 2017-03-19 17:52 ./usr/lib/R/bin/javareconf
-rwxr-xr-x root/root    274381 2017-03-19 17:52 ./usr/lib/R/bin/libtool
-rwxr-xr-x root/root      3496 2017-03-19 17:52 ./usr/lib/R/bin/mkinstalldirs
-rwxr-xr-x root/root       483 2017-03-19 17:52 ./usr/lib/R/bin/pager
-rwxr-xr-x root/root      4121 2017-03-19 17:52 ./usr/lib/R/bin/rtags
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
-rw-r--r-- root/root      1553 2017-03-19 17:52 ./usr/lib/R/etc/Renviron.orig
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site
-rw-r--r-- root/root      1856 2017-03-19 18:11 ./usr/lib/R/etc/Renviron.ucf
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
-rw-r--r-- root/root       165 2017-03-19 17:52 ./usr/lib/R/etc/javaconf
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/R/etc/repositories -> /etc/R/repositories
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/lib/
-rw-r--r-- root/root   1994040 2017-03-19 18:12 ./usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/
-rw-r--r-- root/root       954 2017-03-19 17:52 ./usr/lib/R/library/base/CITATION
-rw-r--r-- root/root       267 2017-03-19 17:52 ./usr/lib/R/library/base/DESCRIPTION
-rw-r--r-- root/root     22640 2017-03-19 17:52 ./usr/lib/R/library/base/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/
-rw-r--r-- root/root     20432 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/Rd.rds
-rw-r--r-- root/root       245 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/demo.rds
-rw-r--r-- root/root     21024 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/hsearch.rds
-rw-r--r-- root/root     12140 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/links.rds
-rw-r--r-- root/root       468 2017-03-19 17:52 ./usr/lib/R/library/base/Meta/package.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/R/
-rw-r--r-- root/root      5086 2017-03-19 17:52 ./usr/lib/R/library/base/R/Rprofile
-rw-r--r-- root/root      4434 2017-03-19 17:52 ./usr/lib/R/library/base/R/base
-rw-r--r-- root/root    722191 2017-03-19 17:52 ./usr/lib/R/library/base/R/base.rdb
-rw-r--r-- root/root     12432 2017-03-19 17:52 ./usr/lib/R/library/base/R/base.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/demo/
-rw-r--r-- root/root      1179 2017-03-19 17:52 ./usr/lib/R/library/base/demo/error.catching.R
-rw-r--r-- root/root      4252 2017-03-19 17:52 ./usr/lib/R/library/base/demo/is.things.R
-rw-r--r-- root/root      2115 2017-03-19 17:52 ./usr/lib/R/library/base/demo/recursion.R
-rw-r--r-- root/root      1560 2017-03-19 17:52 ./usr/lib/R/library/base/demo/scoping.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/help/
-rw-r--r-- root/root     31849 2017-03-19 17:52 ./usr/lib/R/library/base/help/AnIndex
-rw-r--r-- root/root     11362 2017-03-19 17:52 ./usr/lib/R/library/base/help/aliases.rds
-rw-r--r-- root/root   1896917 2017-03-19 17:52 ./usr/lib/R/library/base/help/base.rdb
-rw-r--r-- root/root      8591 2017-03-19 17:52 ./usr/lib/R/library/base/help/base.rdx
-rw-r--r-- root/root      2986 2017-03-19 17:52 ./usr/lib/R/library/base/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/base/html/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/compiler/
-rw-r--r-- root/root       282 2017-03-19 17:52 ./usr/lib/R/library/compiler/DESCRIPTION
-rw-r--r-- root/root        43 2017-03-19 17:52 ./usr/lib/R/library/compiler/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/
-rw-r--r-- root/root       301 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/Rd.rds
-rw-r--r-- root/root       369 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/hsearch.rds
-rw-r--r-- root/root       209 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/links.rds
-rw-r--r-- root/root       254 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/nsInfo.rds
-rw-r--r-- root/root       480 2017-03-19 17:52 ./usr/lib/R/library/compiler/Meta/package.rds
-rw-r--r-- root/root       127 2017-03-19 17:52 ./usr/lib/R/library/compiler/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/compiler/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/compiler/R/compiler
-rw-r--r-- root/root    112511 2017-03-19 17:52 ./usr/lib/R/library/compiler/R/compiler.rdb
-rw-r--r-- root/root      2995 2017-03-19 17:52 ./usr/lib/R/library/compiler/R/compiler.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/
-rw-r--r-- root/root       174 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/AnIndex
-rw-r--r-- root/root       145 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/aliases.rds
-rw-r--r-- root/root      6853 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/compiler.rdb
-rw-r--r-- root/root       149 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/compiler.rdx
-rw-r--r-- root/root       124 2017-03-19 17:52 ./usr/lib/R/library/compiler/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/compiler/html/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/datasets/
-rw-r--r-- root/root       274 2017-03-19 17:52 ./usr/lib/R/library/datasets/DESCRIPTION
-rw-r--r-- root/root      5615 2017-03-19 17:52 ./usr/lib/R/library/datasets/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/
-rw-r--r-- root/root      3639 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/Rd.rds
-rw-r--r-- root/root      2679 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/data.rds
-rw-r--r-- root/root      3234 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/hsearch.rds
-rw-r--r-- root/root      1344 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/links.rds
-rw-r--r-- root/root       180 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/nsInfo.rds
-rw-r--r-- root/root       465 2017-03-19 17:52 ./usr/lib/R/library/datasets/Meta/package.rds
-rw-r--r-- root/root        73 2017-03-19 17:52 ./usr/lib/R/library/datasets/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/datasets/data/
-rw-r--r-- root/root    112630 2017-03-19 17:52 ./usr/lib/R/library/datasets/data/Rdata.rdb
-rw-r--r-- root/root      1050 2017-03-19 17:52 ./usr/lib/R/library/datasets/data/Rdata.rds
-rw-r--r-- root/root      1518 2017-03-19 17:52 ./usr/lib/R/library/datasets/data/Rdata.rdx
-rw-r--r-- root/root      2122 2017-03-19 17:52 ./usr/lib/R/library/datasets/data/morley.tab
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/
-rw-r--r-- root/root      2017 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/AnIndex
-rw-r--r-- root/root       890 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/aliases.rds
-rw-r--r-- root/root    198091 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/datasets.rdb
-rw-r--r-- root/root      2019 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/datasets.rdx
-rw-r--r-- root/root       843 2017-03-19 17:52 ./usr/lib/R/library/datasets/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/datasets/html/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/
-rw-r--r-- root/root       376 2017-03-19 17:52 ./usr/lib/R/library/grDevices/DESCRIPTION
-rw-r--r-- root/root      3850 2017-03-19 17:52 ./usr/lib/R/library/grDevices/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/
-rw-r--r-- root/root      3004 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/Rd.rds
-rw-r--r-- root/root       133 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/demo.rds
-rw-r--r-- root/root      2953 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/hsearch.rds
-rw-r--r-- root/root      1471 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/links.rds
-rw-r--r-- root/root      1104 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/nsInfo.rds
-rw-r--r-- root/root       534 2017-03-19 17:52 ./usr/lib/R/library/grDevices/Meta/package.rds
-rw-r--r-- root/root      2410 2017-03-19 17:52 ./usr/lib/R/library/grDevices/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/grDevices/R/grDevices
-rw-r--r-- root/root    154508 2017-03-19 17:52 ./usr/lib/R/library/grDevices/R/grDevices.rdb
-rw-r--r-- root/root      2460 2017-03-19 17:52 ./usr/lib/R/library/grDevices/R/grDevices.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/
-rw-r--r-- root/root      8358 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ArialMT-Bold.afm.gz
-rw-r--r-- root/root      8314 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ArialMT-BoldItalic.afm.gz
-rw-r--r-- root/root      8362 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ArialMT-Italic.afm.gz
-rw-r--r-- root/root      8568 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ArialMT.afm.gz
-rw-r--r-- root/root      3053 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
-rw-r--r-- root/root      3149 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
-rw-r--r-- root/root      3048 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/CM_italic_10.afm.gz
-rw-r--r-- root/root      2953 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/CM_regular_10.afm.gz
-rw-r--r-- root/root      2254 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
-rw-r--r-- root/root      3984 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Courier-Bold.afm.gz
-rw-r--r-- root/root      4112 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz
-rw-r--r-- root/root      4102 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Courier-Oblique.afm.gz
-rw-r--r-- root/root      3973 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Courier.afm.gz
-rw-r--r-- root/root     13003 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
-rw-r--r-- root/root     13213 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz
-rw-r--r-- root/root     13825 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
-rw-r--r-- root/root     13638 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Helvetica.afm.gz
-rw-r--r-- root/root       936 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/MustRead.html
-rw-r--r-- root/root       851 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/README
-rw-r--r-- root/root      3443 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Symbol.afm.gz
-rw-r--r-- root/root     12329 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Times-Bold.afm.gz
-rw-r--r-- root/root     11711 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz
-rw-r--r-- root/root     12658 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Times-Italic.afm.gz
-rw-r--r-- root/root     11845 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/Times-Roman.afm.gz
-rw-r--r-- root/root      2544 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ZapfDingbats.afm.gz
-rw-r--r-- root/root     10225 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/a010013l.afm.gz
-rw-r--r-- root/root     10048 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/a010015l.afm.gz
-rw-r--r-- root/root     10273 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/a010033l.afm.gz
-rw-r--r-- root/root     10190 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/a010035l.afm.gz
-rw-r--r-- root/root      4903 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/agd_____.afm.gz
-rw-r--r-- root/root      4978 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/agdo____.afm.gz
-rw-r--r-- root/root      5059 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/agw_____.afm.gz
-rw-r--r-- root/root      5139 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/agwo____.afm.gz
-rw-r--r-- root/root     10253 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/b018012l.afm.gz
-rw-r--r-- root/root     10087 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/b018015l.afm.gz
-rw-r--r-- root/root     10361 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/b018032l.afm.gz
-rw-r--r-- root/root     10359 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/b018035l.afm.gz
-rw-r--r-- root/root      4254 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/bkd_____.afm.gz
-rw-r--r-- root/root      4369 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/bkdi____.afm.gz
-rw-r--r-- root/root      4257 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/bkl_____.afm.gz
-rw-r--r-- root/root      4331 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/bkli____.afm.gz
-rw-r--r-- root/root     10343 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/c059013l.afm.gz
-rw-r--r-- root/root     10247 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/c059016l.afm.gz
-rw-r--r-- root/root     10540 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/c059033l.afm.gz
-rw-r--r-- root/root     10474 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/c059036l.afm.gz
-rw-r--r-- root/root      2937 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/cmbxti10.afm.gz
-rw-r--r-- root/root      2915 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/cmti10.afm.gz
-rw-r--r-- root/root      3973 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/cob_____.afm.gz
-rw-r--r-- root/root      4084 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/cobo____.afm.gz
-rw-r--r-- root/root      3972 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/com_____.afm.gz
-rw-r--r-- root/root      4092 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/coo_____.afm.gz
-rw-r--r-- root/root      4826 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hv______.afm.gz
-rw-r--r-- root/root      4691 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvb_____.afm.gz
-rw-r--r-- root/root      4833 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvbo____.afm.gz
-rw-r--r-- root/root      4810 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvn_____.afm.gz
-rw-r--r-- root/root      4675 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvnb____.afm.gz
-rw-r--r-- root/root      4826 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvnbo___.afm.gz
-rw-r--r-- root/root      4963 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvno____.afm.gz
-rw-r--r-- root/root      4977 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/hvo_____.afm.gz
-rw-r--r-- root/root     10217 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019003l.afm.gz
-rw-r--r-- root/root     10045 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019004l.afm.gz
-rw-r--r-- root/root     10484 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019023l.afm.gz
-rw-r--r-- root/root     10323 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019024l.afm.gz
-rw-r--r-- root/root     10095 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019043l.afm.gz
-rw-r--r-- root/root      9785 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019044l.afm.gz
-rw-r--r-- root/root     10284 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019063l.afm.gz
-rw-r--r-- root/root     10166 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n019064l.afm.gz
-rw-r--r-- root/root     10539 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n021003l.afm.gz
-rw-r--r-- root/root     10355 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n021004l.afm.gz
-rw-r--r-- root/root     10545 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n021023l.afm.gz
-rw-r--r-- root/root     10525 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n021024l.afm.gz
-rw-r--r-- root/root      5477 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n022003l.afm.gz
-rw-r--r-- root/root      5574 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n022004l.afm.gz
-rw-r--r-- root/root      5872 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n022023l.afm.gz
-rw-r--r-- root/root      5854 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/n022024l.afm.gz
-rw-r--r-- root/root      4281 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ncb_____.afm.gz
-rw-r--r-- root/root      4921 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ncbi____.afm.gz
-rw-r--r-- root/root      4519 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/nci_____.afm.gz
-rw-r--r-- root/root      4453 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/ncr_____.afm.gz
-rw-r--r-- root/root     10421 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/p052003l.afm.gz
-rw-r--r-- root/root     10230 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/p052004l.afm.gz
-rw-r--r-- root/root     10524 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/p052023l.afm.gz
-rw-r--r-- root/root     10281 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/p052024l.afm.gz
-rw-r--r-- root/root      4395 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/pob_____.afm.gz
-rw-r--r-- root/root      4432 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/pobi____.afm.gz
-rw-r--r-- root/root      4454 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/poi_____.afm.gz
-rw-r--r-- root/root      4486 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/por_____.afm.gz
-rw-r--r-- root/root      3383 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/s050000l.afm.gz
-rw-r--r-- root/root      3398 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/sy______.afm.gz
-rw-r--r-- root/root      5005 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/tib_____.afm.gz
-rw-r--r-- root/root      5102 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/tibi____.afm.gz
-rw-r--r-- root/root      5107 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/tii_____.afm.gz
-rw-r--r-- root/root      4983 2017-03-19 17:52 ./usr/lib/R/library/grDevices/afm/tir_____.afm.gz
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/demo/
-rw-r--r-- root/root      3747 2017-03-19 17:52 ./usr/lib/R/library/grDevices/demo/colors.R
-rw-r--r-- root/root      2588 2017-03-19 17:52 ./usr/lib/R/library/grDevices/demo/hclColors.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/
-rw-r--r-- root/root      2094 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/AdobeStd.enc
-rw-r--r-- root/root      2514 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/AdobeSym.enc
-rw-r--r-- root/root      2224 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/CP1250.enc
-rw-r--r-- root/root      2389 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/CP1251.enc
-rw-r--r-- root/root      2185 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/CP1253.enc
-rw-r--r-- root/root      2247 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/CP1257.enc
-rw-r--r-- root/root      2349 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/Cyrillic.enc
-rw-r--r-- root/root      2212 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/Greek.enc
-rw-r--r-- root/root      2213 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/ISOLatin1.enc
-rw-r--r-- root/root      2187 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/ISOLatin2.enc
-rw-r--r-- root/root      2272 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/ISOLatin7.enc
-rw-r--r-- root/root      2196 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/ISOLatin9.enc
-rw-r--r-- root/root      2290 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/KOI8-R.enc
-rw-r--r-- root/root      2308 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/KOI8-U.enc
-rw-r--r-- root/root      2262 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/MacRoman.enc
-rw-r--r-- root/root      2207 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/PDFDoc.enc
-rw-r--r-- root/root      2091 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/TeXtext.enc
-rw-r--r-- root/root      2311 2017-03-19 17:52 ./usr/lib/R/library/grDevices/enc/WinAnsi.enc
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/
-rw-r--r-- root/root      2831 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/AnIndex
-rw-r--r-- root/root      1228 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/aliases.rds
-rw-r--r-- root/root    323245 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/grDevices.rdb
-rw-r--r-- root/root      1542 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/grDevices.rdx
-rw-r--r-- root/root       646 2017-03-19 17:52 ./usr/lib/R/library/grDevices/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/html/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grDevices/icc/
-rw-r--r-- root/root      9521 2017-03-19 17:52 ./usr/lib/R/library/grDevices/icc/srgb
-rw-r--r-- root/root      2680 2017-03-19 17:52 ./usr/lib/R/library/grDevices/icc/srgb.flate
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/grDevices/libs/
-rw-r--r-- root/root     26488 2017-03-19 18:12 ./usr/lib/R/library/grDevices/libs/cairo.so
-rw-r--r-- root/root    182392 2017-03-19 18:12 ./usr/lib/R/library/grDevices/libs/grDevices.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/
-rw-r--r-- root/root       334 2017-03-19 17:52 ./usr/lib/R/library/graphics/DESCRIPTION
-rw-r--r-- root/root      3726 2017-03-19 17:52 ./usr/lib/R/library/graphics/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/
-rw-r--r-- root/root      3161 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/Rd.rds
-rw-r--r-- root/root       262 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/demo.rds
-rw-r--r-- root/root      3128 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/hsearch.rds
-rw-r--r-- root/root      1313 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/links.rds
-rw-r--r-- root/root      1143 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/nsInfo.rds
-rw-r--r-- root/root       540 2017-03-19 17:52 ./usr/lib/R/library/graphics/Meta/package.rds
-rw-r--r-- root/root      2680 2017-03-19 17:52 ./usr/lib/R/library/graphics/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/graphics/R/graphics
-rw-r--r-- root/root    248694 2017-03-19 17:52 ./usr/lib/R/library/graphics/R/graphics.rdb
-rw-r--r-- root/root      1783 2017-03-19 17:52 ./usr/lib/R/library/graphics/R/graphics.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/
-rw-r--r-- root/root     19972 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/Hershey.R
-rw-r--r-- root/root     34519 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/Japanese.R
-rw-r--r-- root/root      5039 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/graphics.R
-rw-r--r-- root/root      1105 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/image.R
-rw-r--r-- root/root      2791 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/persp.R
-rw-r--r-- root/root      8551 2017-03-19 17:52 ./usr/lib/R/library/graphics/demo/plotmath.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/
-rw-r--r-- root/root      2509 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/AnIndex
-rw-r--r-- root/root       989 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/aliases.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/
-rw-r--r-- root/root      2541 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/mai.pdf
-rw-r--r-- root/root      4667 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/mai.png
-rw-r--r-- root/root      3763 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/oma.pdf
-rw-r--r-- root/root      5114 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/oma.png
-rw-r--r-- root/root      4994 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/pch.pdf
-rw-r--r-- root/root      9287 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/pch.png
-rw-r--r-- root/root     27187 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/figures/pch.svg
-rw-r--r-- root/root    455567 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/graphics.rdb
-rw-r--r-- root/root      1648 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/graphics.rdx
-rw-r--r-- root/root       625 2017-03-19 17:52 ./usr/lib/R/library/graphics/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/graphics/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/graphics/libs/
-rw-r--r-- root/root    210868 2017-03-19 18:12 ./usr/lib/R/library/graphics/libs/graphics.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/
-rw-r--r-- root/root       405 2017-03-19 17:52 ./usr/lib/R/library/grid/DESCRIPTION
-rw-r--r-- root/root      4953 2017-03-19 17:52 ./usr/lib/R/library/grid/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/
-rw-r--r-- root/root      3528 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/Rd.rds
-rw-r--r-- root/root      3493 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/hsearch.rds
-rw-r--r-- root/root      1935 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/links.rds
-rw-r--r-- root/root      2026 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/nsInfo.rds
-rw-r--r-- root/root       606 2017-03-19 17:52 ./usr/lib/R/library/grid/Meta/package.rds
-rw-r--r-- root/root     12621 2017-03-19 17:52 ./usr/lib/R/library/grid/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/grid/R/grid
-rw-r--r-- root/root    364984 2017-03-19 17:52 ./usr/lib/R/library/grid/R/grid.rdb
-rw-r--r-- root/root      8415 2017-03-19 17:52 ./usr/lib/R/library/grid/R/grid.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/
-rw-r--r-- root/root      2211 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/DivByZero.txt
-rw-r--r-- root/root     54298 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/changes.txt
-rw-r--r-- root/root    157088 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/displaylist.pdf
-rw-r--r-- root/root    155660 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/frame.pdf
-rw-r--r-- root/root    251758 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/grid.pdf
-rw-r--r-- root/root    106834 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/grobs.pdf
-rw-r--r-- root/root     90529 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/interactive.pdf
-rw-r--r-- root/root     89189 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/locndimn.pdf
-rw-r--r-- root/root     86930 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/moveline.pdf
-rw-r--r-- root/root     79166 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/nonfinite.pdf
-rw-r--r-- root/root    223720 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/plotexample.pdf
-rw-r--r-- root/root    121519 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/rotated.pdf
-rw-r--r-- root/root    133599 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/saveload.pdf
-rw-r--r-- root/root     70497 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/sharing.pdf
-rw-r--r-- root/root    162723 2017-03-19 17:52 ./usr/lib/R/library/grid/doc/viewports.pdf
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/help/
-rw-r--r-- root/root      4932 2017-03-19 17:52 ./usr/lib/R/library/grid/help/AnIndex
-rw-r--r-- root/root      1604 2017-03-19 17:52 ./usr/lib/R/library/grid/help/aliases.rds
-rw-r--r-- root/root    266070 2017-03-19 17:52 ./usr/lib/R/library/grid/help/grid.rdb
-rw-r--r-- root/root      1968 2017-03-19 17:52 ./usr/lib/R/library/grid/help/grid.rdx
-rw-r--r-- root/root       771 2017-03-19 17:52 ./usr/lib/R/library/grid/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/grid/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/grid/libs/
-rw-r--r-- root/root     87892 2017-03-19 18:12 ./usr/lib/R/library/grid/libs/grid.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/methods/
-rw-r--r-- root/root       499 2017-03-19 17:52 ./usr/lib/R/library/methods/DESCRIPTION
-rw-r--r-- root/root      4630 2017-03-19 17:52 ./usr/lib/R/library/methods/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/
-rw-r--r-- root/root      5507 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/Rd.rds
-rw-r--r-- root/root      5577 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/hsearch.rds
-rw-r--r-- root/root      3903 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/links.rds
-rw-r--r-- root/root      1744 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/nsInfo.rds
-rw-r--r-- root/root       644 2017-03-19 17:52 ./usr/lib/R/library/methods/Meta/package.rds
-rw-r--r-- root/root      5200 2017-03-19 17:52 ./usr/lib/R/library/methods/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/methods/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/methods/R/methods
-rw-r--r-- root/root   1083975 2017-03-19 17:52 ./usr/lib/R/library/methods/R/methods.rdb
-rw-r--r-- root/root     13652 2017-03-19 17:52 ./usr/lib/R/library/methods/R/methods.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/methods/help/
-rw-r--r-- root/root     13922 2017-03-19 17:52 ./usr/lib/R/library/methods/help/AnIndex
-rw-r--r-- root/root      4002 2017-03-19 17:52 ./usr/lib/R/library/methods/help/aliases.rds
-rw-r--r-- root/root    480740 2017-03-19 17:52 ./usr/lib/R/library/methods/help/methods.rdb
-rw-r--r-- root/root      1846 2017-03-19 17:52 ./usr/lib/R/library/methods/help/methods.rdx
-rw-r--r-- root/root       800 2017-03-19 17:52 ./usr/lib/R/library/methods/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/methods/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/methods/libs/
-rw-r--r-- root/root     30404 2017-03-19 18:12 ./usr/lib/R/library/methods/libs/methods.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/
-rw-r--r-- root/root       474 2017-03-19 17:52 ./usr/lib/R/library/parallel/DESCRIPTION
-rw-r--r-- root/root       914 2017-03-19 17:52 ./usr/lib/R/library/parallel/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/
-rw-r--r-- root/root       951 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/Rd.rds
-rw-r--r-- root/root       971 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/hsearch.rds
-rw-r--r-- root/root       477 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/links.rds
-rw-r--r-- root/root       621 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/nsInfo.rds
-rw-r--r-- root/root       613 2017-03-19 17:52 ./usr/lib/R/library/parallel/Meta/package.rds
-rw-r--r-- root/root      1345 2017-03-19 17:52 ./usr/lib/R/library/parallel/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/parallel/R/parallel
-rw-r--r-- root/root     70208 2017-03-19 17:52 ./usr/lib/R/library/parallel/R/parallel.rdb
-rw-r--r-- root/root      1702 2017-03-19 17:52 ./usr/lib/R/library/parallel/R/parallel.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/doc/
-rw-r--r-- root/root    291793 2017-03-19 17:52 ./usr/lib/R/library/parallel/doc/parallel.pdf
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/
-rw-r--r-- root/root       995 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/AnIndex
-rw-r--r-- root/root       417 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/aliases.rds
-rw-r--r-- root/root     65867 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/parallel.rdb
-rw-r--r-- root/root       450 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/parallel.rdx
-rw-r--r-- root/root       256 2017-03-19 17:52 ./usr/lib/R/library/parallel/help/paths.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/parallel/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/parallel/libs/
-rw-r--r-- root/root     18048 2017-03-19 18:12 ./usr/lib/R/library/parallel/libs/parallel.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/splines/
-rw-r--r-- root/root       416 2017-03-19 17:52 ./usr/lib/R/library/splines/DESCRIPTION
-rw-r--r-- root/root       832 2017-03-19 17:52 ./usr/lib/R/library/splines/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/
-rw-r--r-- root/root       732 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/Rd.rds
-rw-r--r-- root/root       724 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/hsearch.rds
-rw-r--r-- root/root       322 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/links.rds
-rw-r--r-- root/root       565 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/nsInfo.rds
-rw-r--r-- root/root       600 2017-03-19 17:52 ./usr/lib/R/library/splines/Meta/package.rds
-rw-r--r-- root/root      1415 2017-03-19 17:52 ./usr/lib/R/library/splines/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/splines/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/splines/R/splines
-rw-r--r-- root/root     39537 2017-03-19 17:52 ./usr/lib/R/library/splines/R/splines.rdb
-rw-r--r-- root/root       795 2017-03-19 17:52 ./usr/lib/R/library/splines/R/splines.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/splines/help/
-rw-r--r-- root/root       541 2017-03-19 17:52 ./usr/lib/R/library/splines/help/AnIndex
-rw-r--r-- root/root       229 2017-03-19 17:52 ./usr/lib/R/library/splines/help/aliases.rds
-rw-r--r-- root/root       249 2017-03-19 17:52 ./usr/lib/R/library/splines/help/paths.rds
-rw-r--r-- root/root     37387 2017-03-19 17:52 ./usr/lib/R/library/splines/help/splines.rdb
-rw-r--r-- root/root       459 2017-03-19 17:52 ./usr/lib/R/library/splines/help/splines.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/splines/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/splines/libs/
-rw-r--r-- root/root      9648 2017-03-19 18:12 ./usr/lib/R/library/splines/libs/splines.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/
-rw-r--r-- root/root      1526 2017-03-19 17:52 ./usr/lib/R/library/stats/COPYRIGHTS.modreg
-rw-r--r-- root/root       303 2017-03-19 17:52 ./usr/lib/R/library/stats/DESCRIPTION
-rw-r--r-- root/root     18519 2017-03-19 17:52 ./usr/lib/R/library/stats/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/
-rw-r--r-- root/root     12640 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/Rd.rds
-rw-r--r-- root/root       267 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/demo.rds
-rw-r--r-- root/root     12717 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/hsearch.rds
-rw-r--r-- root/root      6335 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/links.rds
-rw-r--r-- root/root      4248 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/nsInfo.rds
-rw-r--r-- root/root       502 2017-03-19 17:52 ./usr/lib/R/library/stats/Meta/package.rds
-rw-r--r-- root/root     16376 2017-03-19 17:52 ./usr/lib/R/library/stats/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/stats/R/stats
-rw-r--r-- root/root   1246340 2017-03-19 17:52 ./usr/lib/R/library/stats/R/stats.rdb
-rw-r--r-- root/root     10624 2017-03-19 17:52 ./usr/lib/R/library/stats/R/stats.rdx
-rw-r--r-- root/root       550 2017-03-19 17:52 ./usr/lib/R/library/stats/SOURCES.ts
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/demo/
-rw-r--r-- root/root       744 2017-03-19 17:52 ./usr/lib/R/library/stats/demo/glm.vr.R
-rw-r--r-- root/root      5041 2017-03-19 17:52 ./usr/lib/R/library/stats/demo/lm.glm.R
-rw-r--r-- root/root      2506 2017-03-19 17:52 ./usr/lib/R/library/stats/demo/nlm.R
-rw-r--r-- root/root      1282 2017-03-19 17:52 ./usr/lib/R/library/stats/demo/smooth.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/help/
-rw-r--r-- root/root     15873 2017-03-19 17:52 ./usr/lib/R/library/stats/help/AnIndex
-rw-r--r-- root/root      5264 2017-03-19 17:52 ./usr/lib/R/library/stats/help/aliases.rds
-rw-r--r-- root/root      2337 2017-03-19 17:52 ./usr/lib/R/library/stats/help/paths.rds
-rw-r--r-- root/root   1441541 2017-03-19 17:52 ./usr/lib/R/library/stats/help/stats.rdb
-rw-r--r-- root/root      6469 2017-03-19 17:52 ./usr/lib/R/library/stats/help/stats.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/stats/libs/
-rw-r--r-- root/root    545532 2017-03-19 18:12 ./usr/lib/R/library/stats/libs/stats.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats4/
-rw-r--r-- root/root       345 2017-03-19 17:52 ./usr/lib/R/library/stats4/DESCRIPTION
-rw-r--r-- root/root      1215 2017-03-19 17:52 ./usr/lib/R/library/stats4/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/
-rw-r--r-- root/root       791 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/Rd.rds
-rw-r--r-- root/root       819 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/hsearch.rds
-rw-r--r-- root/root       420 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/links.rds
-rw-r--r-- root/root       329 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/nsInfo.rds
-rw-r--r-- root/root       552 2017-03-19 17:52 ./usr/lib/R/library/stats4/Meta/package.rds
-rw-r--r-- root/root       555 2017-03-19 17:52 ./usr/lib/R/library/stats4/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats4/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/stats4/R/stats4
-rw-r--r-- root/root     93188 2017-03-19 17:52 ./usr/lib/R/library/stats4/R/stats4.rdb
-rw-r--r-- root/root      1039 2017-03-19 17:52 ./usr/lib/R/library/stats4/R/stats4.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/
-rw-r--r-- root/root      1120 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/AnIndex
-rw-r--r-- root/root       350 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/aliases.rds
-rw-r--r-- root/root       251 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/paths.rds
-rw-r--r-- root/root     30358 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/stats4.rdb
-rw-r--r-- root/root       461 2017-03-19 17:52 ./usr/lib/R/library/stats4/help/stats4.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/stats4/html/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/
-rw-r--r-- root/root       319 2017-03-19 17:52 ./usr/lib/R/library/tcltk/DESCRIPTION
-rw-r--r-- root/root       626 2017-03-19 17:52 ./usr/lib/R/library/tcltk/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/
-rw-r--r-- root/root      2343 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/Rd.rds
-rw-r--r-- root/root       266 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/demo.rds
-rw-r--r-- root/root      2401 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/hsearch.rds
-rw-r--r-- root/root      2028 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/links.rds
-rw-r--r-- root/root       458 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/nsInfo.rds
-rw-r--r-- root/root       533 2017-03-19 17:52 ./usr/lib/R/library/tcltk/Meta/package.rds
-rw-r--r-- root/root       980 2017-03-19 17:52 ./usr/lib/R/library/tcltk/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/tcltk/R/tcltk
-rw-r--r-- root/root     74635 2017-03-19 17:52 ./usr/lib/R/library/tcltk/R/tcltk.rdb
-rw-r--r-- root/root      3373 2017-03-19 17:52 ./usr/lib/R/library/tcltk/R/tcltk.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/demo/
-rw-r--r-- root/root      5228 2017-03-19 17:52 ./usr/lib/R/library/tcltk/demo/tkcanvas.R
-rw-r--r-- root/root      3476 2017-03-19 17:52 ./usr/lib/R/library/tcltk/demo/tkdensity.R
-rw-r--r-- root/root      1229 2017-03-19 17:52 ./usr/lib/R/library/tcltk/demo/tkfaq.R
-rw-r--r-- root/root      2975 2017-03-19 17:52 ./usr/lib/R/library/tcltk/demo/tkttest.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/
-rw-r--r-- root/root       947 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/Tk-frontend.R
-rw-r--r-- root/root      2235 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/console.tcl
-rw-r--r-- root/root     39160 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/hierarchy.tcl
-rw-r--r-- root/root      1343 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/pkgIndex.tcl
-rw-r--r-- root/root     78634 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/progressbar.tcl
-rw-r--r-- root/root     17830 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util-dump.tcl
-rw-r--r-- root/root      5753 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util-expand.tcl
-rw-r--r-- root/root      2115 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util-number.tcl
-rw-r--r-- root/root      3600 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util-string.tcl
-rw-r--r-- root/root      7157 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util-tk.tcl
-rw-r--r-- root/root     23267 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/util.tcl
-rw-r--r-- root/root     32703 2017-03-19 17:52 ./usr/lib/R/library/tcltk/exec/widget.tcl
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/
-rw-r--r-- root/root      7293 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/AnIndex
-rw-r--r-- root/root      2031 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/aliases.rds
-rw-r--r-- root/root       275 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/paths.rds
-rw-r--r-- root/root     50566 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/tcltk.rdb
-rw-r--r-- root/root       498 2017-03-19 17:52 ./usr/lib/R/library/tcltk/help/tcltk.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tcltk/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/tcltk/libs/
-rw-r--r-- root/root     22380 2017-03-19 18:12 ./usr/lib/R/library/tcltk/libs/tcltk.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tools/
-rw-r--r-- root/root       326 2017-03-19 17:52 ./usr/lib/R/library/tools/DESCRIPTION
-rw-r--r-- root/root      3547 2017-03-19 17:52 ./usr/lib/R/library/tools/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/
-rw-r--r-- root/root      2933 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/Rd.rds
-rw-r--r-- root/root      2863 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/hsearch.rds
-rw-r--r-- root/root      1492 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/links.rds
-rw-r--r-- root/root      1650 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/nsInfo.rds
-rw-r--r-- root/root       505 2017-03-19 17:52 ./usr/lib/R/library/tools/Meta/package.rds
-rw-r--r-- root/root      6755 2017-03-19 17:52 ./usr/lib/R/library/tools/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tools/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/tools/R/tools
-rw-r--r-- root/root   1272558 2017-03-19 17:52 ./usr/lib/R/library/tools/R/tools.rdb
-rw-r--r-- root/root      9370 2017-03-19 17:52 ./usr/lib/R/library/tools/R/tools.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tools/help/
-rw-r--r-- root/root      3085 2017-03-19 17:52 ./usr/lib/R/library/tools/help/AnIndex
-rw-r--r-- root/root      1218 2017-03-19 17:52 ./usr/lib/R/library/tools/help/aliases.rds
-rw-r--r-- root/root       708 2017-03-19 17:52 ./usr/lib/R/library/tools/help/paths.rds
-rw-r--r-- root/root    201748 2017-03-19 17:52 ./usr/lib/R/library/tools/help/tools.rdb
-rw-r--r-- root/root      1542 2017-03-19 17:52 ./usr/lib/R/library/tools/help/tools.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/tools/html/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/tools/libs/
-rw-r--r-- root/root     75600 2017-03-19 18:12 ./usr/lib/R/library/tools/libs/tools.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/
-rw-r--r-- root/root       237 2017-03-19 17:52 ./usr/lib/R/library/translations/DESCRIPTION
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/da/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/
-rw-r--r-- root/root     53247 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3227 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     10315 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root      1247 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root      1247 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root      1371 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      2626 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2113 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root      4480 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1279 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2168 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      5905 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root      4964 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root     34916 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20145 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9265 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root       583 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       843 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4535 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1484 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       552 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/splines.mo
-rw-r--r-- root/root      6180 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1272 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root       969 2017-03-19 17:52 ./usr/lib/R/library/translations/da/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/de/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/
-rw-r--r-- root/root     54750 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3468 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13346 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15378 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     17069 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     68708 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3729 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2610 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     85926 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1293 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2236 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     43168 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     40388 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    162174 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20610 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     16480 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12011 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2669 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5481 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2081 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       558 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18423 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1309 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3612 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5246 2017-03-19 17:52 ./usr/lib/R/library/translations/de/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en/LC_MESSAGES/
-rw-r--r-- root/root       829 2017-03-19 17:52 ./usr/lib/R/library/translations/en/LC_MESSAGES/R.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/
-rw-r--r-- root/root     52921 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3289 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     12709 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     14819 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     16431 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     64871 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3533 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2491 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     83521 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1207 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2149 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     41511 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     39003 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    154409 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R.mo
-rw-r--r-- root/root     15429 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     11573 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2563 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5177 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1959 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       509 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     17563 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1217 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3427 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5035 2017-03-19 17:52 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en_GB/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/
-rw-r--r-- root/root       391 2017-03-19 17:52 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root       951 2017-03-19 17:52 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R.mo
-rw-r--r-- root/root      1161 2017-03-19 17:52 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/grDevices.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/es/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/es/LC_MESSAGES/
-rw-r--r-- root/root    118950 2017-03-19 17:52 ./usr/lib/R/library/translations/es/LC_MESSAGES/R.mo
-rw-r--r-- root/root     21018 2017-03-19 17:52 ./usr/lib/R/library/translations/es/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9207 2017-03-19 17:52 ./usr/lib/R/library/translations/es/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/LC_MESSAGES/
-rw-r--r-- root/root       553 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      1656 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root      2208 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R.mo
-rw-r--r-- root/root     27136 2017-03-19 17:52 ./usr/lib/R/library/translations/fa/LC_MESSAGES/RGui.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/
-rw-r--r-- root/root     57539 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3787 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13925 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15756 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     17309 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     71783 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3951 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2693 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     88466 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1395 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2390 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     44900 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     41984 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    169092 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R.mo
-rw-r--r-- root/root     21500 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     17173 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12487 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2844 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5864 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2208 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       582 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     18825 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1407 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3818 2017-03-19 17:52 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/it/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/
-rw-r--r-- root/root     20139 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      5945 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root      8964 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     54258 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1269 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root       916 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      5273 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     87426 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/R.mo
-rw-r--r-- root/root     18839 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      4702 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root      8747 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       566 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/grid.mo
-rw-r--r-- root/root     11776 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/stats.mo
-rw-r--r-- root/root       661 2017-03-19 17:52 ./usr/lib/R/library/translations/it/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/
-rw-r--r-- root/root     63840 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      4108 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     15430 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     17718 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     19961 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     77805 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3174 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     98475 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1492 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2733 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     50923 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     46777 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    190242 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R.mo
-rw-r--r-- root/root     24207 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     19498 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     13936 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      3230 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      6278 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/methods.mo
-rw-r--r-- root/root       527 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     20978 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1435 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      4153 2017-03-19 17:52 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/
-rw-r--r-- root/root     43917 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      2343 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     14069 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     16169 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     16880 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     59037 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      4198 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      3082 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     79821 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1428 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2574 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     40536 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     42497 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    159731 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R.mo
-rw-r--r-- root/root     21845 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     17636 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12757 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      3098 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      6063 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2406 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       604 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     19576 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1499 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3765 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5486 2017-03-19 17:52 ./usr/lib/R/library/translations/ko/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/LC_MESSAGES/
-rw-r--r-- root/root     40537 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root    129027 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20416 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9530 2017-03-19 17:52 ./usr/lib/R/library/translations/nn/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/
-rw-r--r-- root/root     59860 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3807 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     14297 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     16168 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     18066 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     68996 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      4174 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2789 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     92531 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1517 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2476 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     46437 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     43118 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    167299 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R.mo
-rw-r--r-- root/root     21047 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     16981 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     12703 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2975 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5515 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2301 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       721 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     19273 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1480 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3886 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tools.mo
-rw-r--r-- root/root      5604 2017-03-19 17:52 ./usr/lib/R/library/translations/pl/LC_MESSAGES/utils.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/
-rw-r--r-- root/root     32737 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3553 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root      9893 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     12405 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root      5041 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root      5500 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      2239 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     49579 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1354 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2325 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root      2111 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root      1218 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    135607 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20940 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      2524 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     10057 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root       952 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4949 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/methods.mo
-rw-r--r-- root/root       629 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     16930 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1365 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root       809 2017-03-19 17:52 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/
-rw-r--r-- root/root     53327 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      4802 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     13266 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     15425 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     15860 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     65501 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3829 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2660 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     85050 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1447 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2332 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     35399 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     39126 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    204819 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20443 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     15949 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     15508 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2547 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      5294 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      2134 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       603 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     17829 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1374 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3673 2017-03-19 17:52 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/
-rw-r--r-- root/root       790 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root     34238 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1275 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root       522 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root       941 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    127652 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R.mo
-rw-r--r-- root/root     20883 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9716 2017-03-19 17:52 ./usr/lib/R/library/translations/tr/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/
-rw-r--r-- root/root     48485 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo
-rw-r--r-- root/root      3204 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo
-rw-r--r-- root/root     11638 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo
-rw-r--r-- root/root     13708 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-graphics.mo
-rw-r--r-- root/root     14650 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grid.mo
-rw-r--r-- root/root     60094 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-methods.mo
-rw-r--r-- root/root      3320 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-parallel.mo
-rw-r--r-- root/root      2385 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-splines.mo
-rw-r--r-- root/root     75788 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats.mo
-rw-r--r-- root/root      1199 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats4.mo
-rw-r--r-- root/root      2107 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tcltk.mo
-rw-r--r-- root/root     31886 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tools.mo
-rw-r--r-- root/root     35463 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-utils.mo
-rw-r--r-- root/root    144023 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R.mo
-rw-r--r-- root/root     17586 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root     14564 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grDevices.mo
-rw-r--r-- root/root     10696 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo
-rw-r--r-- root/root      2357 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grid.mo
-rw-r--r-- root/root      4942 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/methods.mo
-rw-r--r-- root/root      1904 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo
-rw-r--r-- root/root       496 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/splines.mo
-rw-r--r-- root/root     16189 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo
-rw-r--r-- root/root      1215 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tcltk.mo
-rw-r--r-- root/root      3222 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tools.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_TW/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/
-rw-r--r-- root/root    128878 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R.mo
-rw-r--r-- root/root     17904 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/RGui.mo
-rw-r--r-- root/root      9112 2017-03-19 17:52 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/graphics.mo
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/
-rw-r--r-- root/root       299 2017-03-19 17:52 ./usr/lib/R/library/utils/DESCRIPTION
-rw-r--r-- root/root      7629 2017-03-19 17:52 ./usr/lib/R/library/utils/INDEX
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/
-rw-r--r-- root/root      5868 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/Rd.rds
-rw-r--r-- root/root      5726 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/hsearch.rds
-rw-r--r-- root/root      2971 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/links.rds
-rw-r--r-- root/root      2105 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/nsInfo.rds
-rw-r--r-- root/root       499 2017-03-19 17:52 ./usr/lib/R/library/utils/Meta/package.rds
-rw-r--r-- root/root      6328 2017-03-19 17:52 ./usr/lib/R/library/utils/NAMESPACE
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/R/
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/lib/R/library/utils/R/utils
-rw-r--r-- root/root    678488 2017-03-19 17:52 ./usr/lib/R/library/utils/R/utils.rdb
-rw-r--r-- root/root      6286 2017-03-19 17:52 ./usr/lib/R/library/utils/R/utils.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/Sweave/
-rw-r--r-- root/root      1305 2017-03-19 17:52 ./usr/lib/R/library/utils/Sweave/Sweave-test-1.Rnw
-rw-r--r-- root/root       625 2017-03-19 17:52 ./usr/lib/R/library/utils/Sweave/example-1.Rnw
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/doc/
-rw-r--r-- root/root    320015 2017-03-19 17:52 ./usr/lib/R/library/utils/doc/Sweave.pdf
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/help/
-rw-r--r-- root/root      6617 2017-03-19 17:52 ./usr/lib/R/library/utils/help/AnIndex
-rw-r--r-- root/root      2458 2017-03-19 17:52 ./usr/lib/R/library/utils/help/aliases.rds
-rw-r--r-- root/root      1226 2017-03-19 17:52 ./usr/lib/R/library/utils/help/paths.rds
-rw-r--r-- root/root    598972 2017-03-19 17:52 ./usr/lib/R/library/utils/help/utils.rdb
-rw-r--r-- root/root      3013 2017-03-19 17:52 ./usr/lib/R/library/utils/help/utils.rdx
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/html/
-rw-r--r-- root/root     13514 2017-03-19 17:52 ./usr/lib/R/library/utils/iconvlist
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/library/utils/libs/
-rw-r--r-- root/root     38688 2017-03-19 18:12 ./usr/lib/R/library/utils/libs/utils.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/library/utils/misc/
-rw-r--r-- root/root        38 2017-03-19 17:52 ./usr/lib/R/library/utils/misc/exDIF.csv
-rw-r--r-- root/root       242 2017-03-19 17:52 ./usr/lib/R/library/utils/misc/exDIF.dif
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/R/modules/
-rw-r--r-- root/root     97988 2017-03-19 18:12 ./usr/lib/R/modules/R_X11.so
-rw-r--r-- root/root     43072 2017-03-19 18:12 ./usr/lib/R/modules/R_de.so
-rw-r--r-- root/root     55088 2017-03-19 18:12 ./usr/lib/R/modules/internet.so
-rw-r--r-- root/root     38480 2017-03-19 18:12 ./usr/lib/R/modules/lapack.so
-rw-r--r-- root/root    386500 2017-03-19 18:12 ./usr/lib/R/modules/vfonts.so
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/lib/R/site-library/
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/libR.so -> R/lib/libR.so
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       249 2017-03-19 17:52 ./usr/lib/pkgconfig/libR.pc
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/R/doc/
-rw-r--r-- root/root       741 2017-03-19 17:52 ./usr/share/R/doc/AUTHORS
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2
-rw-r--r-- root/root     18780 2017-03-19 17:52 ./usr/share/R/doc/COPYRIGHTS
-rw-r--r-- root/root     12303 2017-03-19 17:52 ./usr/share/R/doc/CRAN_mirrors.csv
-rw-r--r-- root/root    124770 2017-03-19 17:52 ./usr/share/R/doc/FAQ
-rw-r--r-- root/root      2530 2017-03-19 17:52 ./usr/share/R/doc/KEYWORDS
-rw-r--r-- root/root      3047 2017-03-19 17:52 ./usr/share/R/doc/KEYWORDS.db
-rw-r--r-- root/root    108064 2017-03-19 17:52 ./usr/share/R/doc/NEWS
-rw-r--r-- root/root     93568 2017-03-19 17:52 ./usr/share/R/doc/NEWS.0
-rw-r--r-- root/root    294277 2017-03-19 17:52 ./usr/share/R/doc/NEWS.1
-rw-r--r-- root/root    641818 2017-03-19 17:52 ./usr/share/R/doc/NEWS.2
-rw-r--r-- root/root    300849 2017-03-19 17:52 ./usr/share/R/doc/NEWS.pdf
-rw-r--r-- root/root    171512 2017-03-19 17:52 ./usr/share/R/doc/NEWS.rds
-rw-r--r-- root/root      1248 2017-03-19 17:52 ./usr/share/R/doc/RESOURCES
-rw-r--r-- root/root      3291 2017-03-19 17:52 ./usr/share/R/doc/THANKS
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/doc/html/
-rw-r--r-- root/root    353376 2017-03-19 17:52 ./usr/share/R/doc/html/NEWS.2.html
-rw-r--r-- root/root    151619 2017-03-19 17:52 ./usr/share/R/doc/html/NEWS.html
-rw-r--r-- root/root      1179 2017-03-19 17:52 ./usr/share/R/doc/html/R.css
-rw-r--r-- root/root       625 2017-03-19 17:52 ./usr/share/R/doc/html/Search.html
-rw-r--r-- root/root      7086 2017-03-19 17:52 ./usr/share/R/doc/html/SearchOn.html
-rw-r--r-- root/root      1973 2017-03-19 17:52 ./usr/share/R/doc/html/about.html
-rw-r--r-- root/root      1406 2017-03-19 17:52 ./usr/share/R/doc/html/favicon.ico
-rw-r--r-- root/root      2178 2017-03-19 17:52 ./usr/share/R/doc/html/index.html
-rw-r--r-- root/root      1013 2017-03-19 17:52 ./usr/share/R/doc/html/left.jpg
-rw-r--r-- root/root      3173 2017-03-19 17:52 ./usr/share/R/doc/html/logo.jpg
-rw-r--r-- root/root      3682 2017-03-19 17:52 ./usr/share/R/doc/html/logosm.jpg
-rw-r--r-- root/root       450 2017-03-19 17:52 ./usr/share/R/doc/html/packages-head-utf8.html
-rw-r--r-- root/root      2971 2017-03-19 17:52 ./usr/share/R/doc/html/packages.html
-rw-r--r-- root/root      3685 2017-03-19 17:52 ./usr/share/R/doc/html/resources.html
-rw-r--r-- root/root      1022 2017-03-19 17:52 ./usr/share/R/doc/html/right.jpg
-rw-r--r-- root/root      1021 2017-03-19 17:52 ./usr/share/R/doc/html/up.jpg
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/R/doc/manual/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/doc/manual/images/
-rw-r--r-- root/root      7185 2017-03-19 17:52 ./usr/share/R/doc/manual/images/QQ.png
-rw-r--r-- root/root      5570 2017-03-19 17:52 ./usr/share/R/doc/manual/images/ecdf.png
-rw-r--r-- root/root      3884 2017-03-19 17:52 ./usr/share/R/doc/manual/images/fig11.png
-rw-r--r-- root/root      3853 2017-03-19 17:52 ./usr/share/R/doc/manual/images/fig12.png
-rw-r--r-- root/root      9376 2017-03-19 17:52 ./usr/share/R/doc/manual/images/hist.png
-rw-r--r-- root/root      2728 2017-03-19 17:52 ./usr/share/R/doc/manual/images/ice.png
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/include/
-rw-r--r-- root/root      2063 2017-03-19 17:52 ./usr/share/R/include/R.h
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/include/R_ext/
-rw-r--r-- root/root      5558 2017-03-19 17:52 ./usr/share/R/include/R_ext/Applic.h
-rw-r--r-- root/root      2744 2017-03-19 17:52 ./usr/share/R/include/R_ext/Arith.h
-rw-r--r-- root/root     15831 2017-03-19 17:52 ./usr/share/R/include/R_ext/BLAS.h
-rw-r--r-- root/root      1081 2017-03-19 17:52 ./usr/share/R/include/R_ext/Boolean.h
-rw-r--r-- root/root      3978 2017-03-19 17:52 ./usr/share/R/include/R_ext/Callbacks.h
-rw-r--r-- root/root      1036 2017-03-19 17:52 ./usr/share/R/include/R_ext/Complex.h
-rw-r--r-- root/root      3112 2017-03-19 17:52 ./usr/share/R/include/R_ext/Connections.h
-rw-r--r-- root/root      1526 2017-03-19 17:52 ./usr/share/R/include/R_ext/Constants.h
-rw-r--r-- root/root      1548 2017-03-19 17:52 ./usr/share/R/include/R_ext/Error.h
-rw-r--r-- root/root      1052 2017-03-19 17:52 ./usr/share/R/include/R_ext/GetX11Image.h
-rw-r--r-- root/root     29899 2017-03-19 17:52 ./usr/share/R/include/R_ext/GraphicsDevice.h
-rw-r--r-- root/root     18506 2017-03-19 17:52 ./usr/share/R/include/R_ext/GraphicsEngine.h
-rw-r--r-- root/root      4894 2017-03-19 17:52 ./usr/share/R/include/R_ext/Itermacros.h
-rw-r--r-- root/root    123346 2017-03-19 17:52 ./usr/share/R/include/R_ext/Lapack.h
-rw-r--r-- root/root      4377 2017-03-19 17:52 ./usr/share/R/include/R_ext/Linpack.h
-rw-r--r-- root/root      1351 2017-03-19 17:52 ./usr/share/R/include/R_ext/MathThreads.h
-rw-r--r-- root/root      1328 2017-03-19 17:52 ./usr/share/R/include/R_ext/Memory.h
-rw-r--r-- root/root      1280 2017-03-19 17:52 ./usr/share/R/include/R_ext/Parse.h
-rw-r--r-- root/root      1445 2017-03-19 17:52 ./usr/share/R/include/R_ext/Print.h
-rw-r--r-- root/root      2387 2017-03-19 17:52 ./usr/share/R/include/R_ext/PrtUtil.h
-rw-r--r-- root/root     10957 2017-03-19 17:52 ./usr/share/R/include/R_ext/QuartzDevice.h
-rw-r--r-- root/root      2023 2017-03-19 17:52 ./usr/share/R/include/R_ext/R-ftp-http.h
-rw-r--r-- root/root      3127 2017-03-19 17:52 ./usr/share/R/include/R_ext/RS.h
-rw-r--r-- root/root      2757 2017-03-19 17:52 ./usr/share/R/include/R_ext/RStartup.h
-rw-r--r-- root/root      1713 2017-03-19 17:52 ./usr/share/R/include/R_ext/Rallocators.h
-rw-r--r-- root/root      1764 2017-03-19 17:52 ./usr/share/R/include/R_ext/Random.h
-rw-r--r-- root/root      4046 2017-03-19 17:52 ./usr/share/R/include/R_ext/Rdynload.h
-rw-r--r-- root/root      1322 2017-03-19 17:52 ./usr/share/R/include/R_ext/Riconv.h
-rw-r--r-- root/root      3504 2017-03-19 17:52 ./usr/share/R/include/R_ext/Utils.h
-rw-r--r-- root/root      1244 2017-03-19 17:52 ./usr/share/R/include/R_ext/Visibility.h
-rw-r--r-- root/root      2956 2017-03-19 17:52 ./usr/share/R/include/R_ext/eventloop.h
-rw-r--r-- root/root      1543 2017-03-19 17:52 ./usr/share/R/include/R_ext/libextern.h
-rw-r--r-- root/root      2445 2017-03-19 17:52 ./usr/share/R/include/R_ext/stats_package.h
-rw-r--r-- root/root      2394 2017-03-19 17:52 ./usr/share/R/include/R_ext/stats_stubs.h
-rw-r--r-- root/root       511 2017-03-19 17:52 ./usr/share/R/include/Rconfig.h
-rw-r--r-- root/root      5916 2017-03-19 17:52 ./usr/share/R/include/Rdefines.h
-rw-r--r-- root/root      2085 2017-03-19 17:52 ./usr/share/R/include/Rembedded.h
-rw-r--r-- root/root      4632 2017-03-19 17:52 ./usr/share/R/include/Rinterface.h
-rw-r--r-- root/root     43124 2017-03-19 17:52 ./usr/share/R/include/Rinternals.h
-rw-r--r-- root/root     17335 2017-03-19 17:52 ./usr/share/R/include/Rmath.h
-rw-r--r-- root/root       500 2017-03-19 17:52 ./usr/share/R/include/Rversion.h
-rw-r--r-- root/root      2142 2017-03-19 17:52 ./usr/share/R/include/S.h
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/R/
-rw-r--r-- root/root      3024 2017-03-19 17:52 ./usr/share/R/share/R/REMOVE.R
-rw-r--r-- root/root       273 2017-03-19 17:52 ./usr/share/R/share/R/examples-footer.R
-rw-r--r-- root/root      2910 2017-03-19 17:52 ./usr/share/R/share/R/examples-header.R
-rw-r--r-- root/root      1056 2017-03-19 17:52 ./usr/share/R/share/R/nspackloader.R
-rw-r--r-- root/root       131 2017-03-19 17:52 ./usr/share/R/share/R/tests-startup.R
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/dictionaries/
-rw-r--r-- root/root      2491 2017-03-19 17:52 ./usr/share/R/share/dictionaries/en_stats.rds
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/encodings/
-rw-r--r-- root/root     74056 2017-03-19 17:52 ./usr/share/R/share/encodings/Adobe-glyphlist
-rw-r--r-- root/root     53369 2017-03-19 17:52 ./usr/share/R/share/encodings/character-sets
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/java/
-rw-r--r-- root/root        87 2017-03-19 17:52 ./usr/share/R/share/java/README
-rw-r--r-- root/root      1356 2017-03-19 17:52 ./usr/share/R/share/java/getsp.class
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/licenses/
-rw-r--r-- root/root     34525 2017-03-19 17:52 ./usr/share/R/share/licenses/AGPL-3
-rw-r--r-- root/root      9073 2017-03-19 17:52 ./usr/share/R/share/licenses/Artistic-2.0
-rw-r--r-- root/root      1514 2017-03-19 17:52 ./usr/share/R/share/licenses/BSD_2_clause
-rw-r--r-- root/root      1729 2017-03-19 17:52 ./usr/share/R/share/licenses/BSD_3_clause
-rw-r--r-- root/root     18011 2017-03-19 17:52 ./usr/share/R/share/licenses/GPL-2
-rw-r--r-- root/root     35147 2017-03-19 17:52 ./usr/share/R/share/licenses/GPL-3
-rw-r--r-- root/root     25292 2017-03-19 17:52 ./usr/share/R/share/licenses/LGPL-2
-rw-r--r-- root/root     26432 2017-03-19 17:52 ./usr/share/R/share/licenses/LGPL-2.1
-rw-r--r-- root/root      7639 2017-03-19 17:52 ./usr/share/R/share/licenses/LGPL-3
-rw-r--r-- root/root      1265 2017-03-19 17:52 ./usr/share/R/share/licenses/MIT
-rw-r--r-- root/root      9545 2017-03-19 17:52 ./usr/share/R/share/licenses/license.db
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/make/
-rw-r--r-- root/root      5972 2017-03-19 17:52 ./usr/share/R/share/make/basepkg.mk
-rw-r--r-- root/root       482 2017-03-19 17:52 ./usr/share/R/share/make/check_vars_ini.mk
-rw-r--r-- root/root       802 2017-03-19 17:52 ./usr/share/R/share/make/check_vars_out.mk
-rw-r--r-- root/root        86 2017-03-19 17:52 ./usr/share/R/share/make/clean.mk
-rw-r--r-- root/root        37 2017-03-19 17:52 ./usr/share/R/share/make/config.mk
-rw-r--r-- root/root       725 2017-03-19 17:52 ./usr/share/R/share/make/lazycomp.mk
-rw-r--r-- root/root       471 2017-03-19 17:52 ./usr/share/R/share/make/shlib.mk
-rw-r--r-- root/root       918 2017-03-19 17:52 ./usr/share/R/share/make/vars.mk
-rw-r--r-- root/root      1081 2017-03-19 17:52 ./usr/share/R/share/make/winshlib.mk
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/sh/
-rwxr-xr-x root/root        27 2017-03-19 17:52 ./usr/share/R/share/sh/echo.sh
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/bib/
-rw-r--r-- root/root     59401 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/bib/RJournal.bib
-rw-r--r-- root/root     72349 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/bib/Rnews.bib
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/bst/
-rw-r--r-- root/root     32350 2017-03-19 17:52 ./usr/share/R/share/texmf/bibtex/bst/jss.bst
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/
-rw-r--r-- root/root     14490 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/Rd.sty
-rw-r--r-- root/root      1607 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/Sweave.sty
-rw-r--r-- root/root     14703 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/jss.cls
-rw-r--r-- root/root       644 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/omsaer.fd
-rw-r--r-- root/root       607 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/omsaett.fd
-rw-r--r-- root/root       607 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/omscmtt.fd
-rw-r--r-- root/root       534 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/ts1aer.fd
-rw-r--r-- root/root       299 2017-03-19 17:52 ./usr/share/R/share/texmf/tex/latex/ts1aett.fd
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/applications/
-rw-r--r-- root/root       212 2017-03-19 18:11 ./usr/share/applications/R.desktop
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core/
-rw-r--r-- root/root     35933 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.0.gz
-rw-r--r-- root/root    108753 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.1.gz
-rw-r--r-- root/root     96657 2014-03-24 23:15 ./usr/share/doc/r-base-core/NEWS.2.Rd.gz
-rw-r--r-- root/root    229656 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.2.gz
-rw-r--r-- root/root     41663 2014-07-08 22:15 ./usr/share/doc/r-base-core/NEWS.Rd.gz
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    296972 2017-03-19 17:45 ./usr/share/doc/r-base-core/NEWS.pdf.gz
-rw-r--r-- root/root    167963 2017-03-19 17:44 ./usr/share/doc/r-base-core/NEWS.rds.gz
-rw-r--r-- root/root      2739 2017-03-19 16:56 ./usr/share/doc/r-base-core/README.Atlas.gz
-rw-r--r-- root/root      2107 2014-07-07 22:15 ./usr/share/doc/r-base-core/README.gz
-rw-r--r-- root/root      3026 2017-03-19 16:56 ./usr/share/doc/r-base-core/README.mathlib
-rw-r--r-- root/root     27945 2017-03-19 16:56 ./usr/share/doc/r-base-core/changelog.Debian.gz
-rw-r--r-- root/root     38539 2017-03-19 17:44 ./usr/share/doc/r-base-core/changelog.gz
-rw-r--r-- root/root     20761 2017-03-19 16:56 ./usr/share/doc/r-base-core/copyright
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core/doc -> ../../R/doc
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/icons/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/icons/hicolor/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/icons/hicolor/48x48/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/icons/hicolor/48x48/apps/
-rw-r--r-- root/root      4440 2017-03-19 18:11 ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/info/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/lintian/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/lintian/overrides/
-rw-r--r-- root/root      7688 2017-03-19 16:56 ./usr/share/lintian/overrides/r-base-core
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/man/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/man/man1/
-rw-r--r-- root/root      2507 2017-03-19 17:52 ./usr/share/man/man1/R.1.gz
-rw-r--r-- root/root       657 2017-03-19 17:52 ./usr/share/man/man1/Rscript.1.gz
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/menu/
-rw-r--r-- root/root       128 2017-03-19 16:56 ./usr/share/menu/r-base-core
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/texmf/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/texmf/tex/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/texmf/tex/latex/
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf


r-mathlib_3.1.1-1+deb8u1_armhf.deb
----------------------------------

 new debian package, version 2.0.
 size 1156342 bytes: control archive=2029 bytes.
    1801 bytes,    39 lines      control              
    1219 bytes,    18 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
 Source: r-base
 Version: 3.1.1-1+deb8u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 1480
 Depends: libc6 (>= 2.4), libgomp1 (>= 4.2.1)
 Recommends: r-base-core (= 3.1.1-1+deb8u1), r-base-dev (= 3.1.1-1+deb8u1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

drwxr-xr-x root/root         0 2017-03-19 18:12 ./
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/include/
-rw-r--r-- root/root     17335 2017-03-19 18:11 ./usr/include/Rmath.h
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/
-rw-r--r-- root/root    283918 2017-03-19 18:12 ./usr/lib/libRmath.a
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/libRmath.so -> libRmath.so.1
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0
-rw-r--r-- root/root    141116 2017-03-19 18:12 ./usr/lib/libRmath.so.1.0.0
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/lib/pkgconfig/
-rw-r--r-- root/root       173 2017-03-19 17:52 ./usr/lib/pkgconfig/libRmath.pc
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root     35933 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.0.gz
-rw-r--r-- root/root    108753 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.1.gz
-rw-r--r-- root/root     96657 2014-03-24 23:15 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz
-rw-r--r-- root/root    229656 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.2.gz
-rw-r--r-- root/root     41663 2014-07-08 22:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    296972 2017-03-19 17:45 ./usr/share/doc/r-mathlib/NEWS.pdf.gz
-rw-r--r-- root/root    167963 2017-03-19 17:44 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2014-07-07 22:15 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root      3026 2017-03-19 16:56 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root     27945 2017-03-19 16:56 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     38539 2017-03-19 17:44 ./usr/share/doc/r-mathlib/changelog.gz
-rw-r--r-- root/root     20761 2017-03-19 16:56 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1370 2012-04-15 22:05 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/lintian/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       231 2017-03-19 16:56 ./usr/share/lintian/overrides/r-mathlib


r-base-core-dbg_3.1.1-1+deb8u1_armhf.deb
----------------------------------------

 new debian package, version 2.0.
 size 2866408 bytes: control archive=1976 bytes.
    1785 bytes,    38 lines      control              
    1937 bytes,    24 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.1.1-1+deb8u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 9828
 Depends: r-base-core (= 3.1.1-1+deb8u1), r-base-dev (= 3.1.1-1+deb8u1)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

drwxr-xr-x root/root         0 2017-03-19 18:12 ./
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/lib/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/bin/
-rw-r--r-- root/root     16424 2017-03-19 18:12 ./usr/lib/debug/usr/bin/Rscript
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/bin/
-rw-r--r-- root/root     16424 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/bin/Rscript
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/bin/exec/
-rw-r--r-- root/root      7948 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/bin/exec/R
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/lib/
-rw-r--r-- root/root   5470576 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grDevices/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/
-rw-r--r-- root/root     84896 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/cairo.so
-rw-r--r-- root/root    447176 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/grDevices.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/graphics/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/graphics/libs/
-rw-r--r-- root/root    590848 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/graphics/libs/graphics.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grid/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grid/libs/
-rw-r--r-- root/root    314004 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/grid/libs/grid.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/methods/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/methods/libs/
-rw-r--r-- root/root     74720 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/methods/libs/methods.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/parallel/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/parallel/libs/
-rw-r--r-- root/root     37504 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/parallel/libs/parallel.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/splines/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/splines/libs/
-rw-r--r-- root/root     15440 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/splines/libs/splines.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/stats/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/stats/libs/
-rw-r--r-- root/root   1292320 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/stats/libs/stats.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tcltk/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tcltk/libs/
-rw-r--r-- root/root     50164 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tcltk/libs/tcltk.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tools/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tools/libs/
-rw-r--r-- root/root    194244 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/tools/libs/tools.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/utils/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/utils/libs/
-rw-r--r-- root/root     94620 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/library/utils/libs/utils.so
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/modules/
-rw-r--r-- root/root    244268 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/modules/R_X11.so
-rw-r--r-- root/root    111712 2017-03-19 18:12 ./usr/lib/debug/usr/lib/R/modules/R_de.so
-rw-r--r-- root/root    171184 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/modules/internet.so
-rw-r--r-- root/root     92660 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/modules/lapack.so
-rw-r--r-- root/root     50324 2017-03-19 18:11 ./usr/lib/debug/usr/lib/R/modules/vfonts.so
-rw-r--r-- root/root    597560 2017-03-19 18:12 ./usr/lib/debug/usr/lib/libRmath.so.1.0.0
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/
drwxr-xr-x root/root         0 2017-03-19 18:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core-dbg/
lrwxrwxrwx root/root         0 2017-03-19 18:12 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz
-rw-r--r-- root/root     27945 2017-03-19 16:56 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz
-rw-r--r-- root/root     38539 2017-03-19 17:44 ./usr/share/doc/r-base-core-dbg/changelog.gz
-rw-r--r-- root/root     20761 2017-03-19 16:56 ./usr/share/doc/r-base-core-dbg/copyright
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/lintian/
drwxr-xr-x root/root         0 2017-03-19 17:52 ./usr/share/lintian/overrides/


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 272404
Build-Time: 4687
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 2512
Job: r-base_3.1.1-1+deb8u1
Machine Architecture: armhf
Package: r-base
Package-Time: 7278
Source-Version: 3.1.1-1+deb8u1
Space: 272404
Status: successful
Version: 3.1.1-1+deb8u1
--------------------------------------------------------------------------------
Finished at 2017-03-19T18:14:33Z
Build needed 02:01:18, 272404k disc space

Page generated on 2024-04-28 23:23:32 UTC
Pages written by Mehdi Dogguy
Architecture specific issues should be sent to <$arch@buildd.debian.org>
Service maintained by the wanna-build team <debian-wb-team@lists.debian.org>
Download code with git: git clone https://buildd.debian.org/git/pgstatus.git
Valid XHTML  Valid CSS