Build log for r-base (2.15.1-4+deb7u1) on armhf

r-base → 2.15.1-4+deb7u1 → armhf → 2017-03-18 00:05:13

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| r-base 2.15.1-4+deb7u1 (armhf)               Fri, 17 Mar 2017 22:26:57 +0000 |
+==============================================================================+

Package: r-base
Version: 2.15.1-4+deb7u1
Source Version: 2.15.1-4+deb7u1
Distribution: wheezy-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-7550e013-a341-4814-b46a-fcc5b8868e57' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1 wheezy-staging Release.gpg [473 B]
Get:2 http://172.17.0.1 wheezy-staging Release [10.8 kB]
Get:3 http://172.17.0.1 wheezy-staging/main Sources [6092 kB]
Get:4 http://172.17.0.1 wheezy-staging/main armhf Packages [6943 kB]
Fetched 13.0 MB in 23s (562 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
Building dependency tree...
Reading state information...
Need to get 24.7 MB of source archives.
Get:1 http://172.17.0.1/private/ wheezy-staging/main r-base 2.15.1-4+deb7u1 (dsc) [2720 B]
Get:2 http://172.17.0.1/private/ wheezy-staging/main r-base 2.15.1-4+deb7u1 (tar) [24.6 MB]
Get:3 http://172.17.0.1/private/ wheezy-staging/main r-base 2.15.1-4+deb7u1 (diff) [91.8 kB]
Fetched 24.7 MB in 7s (3386 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-base-ELDorQ/r-base-2.15.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-base-ELDorQ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/<<BUILDDIR>>/resolver-oMXHMx/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keyring `/<<BUILDDIR>>/resolver-oMXHMx/gpg/secring.gpg' created
gpg: keyring `/<<BUILDDIR>>/resolver-oMXHMx/gpg/pubring.gpg' created
gpg: /<<BUILDDIR>>/resolver-oMXHMx/gpg/trustdb.gpg: trustdb created
gpg: key 48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1  (RSA: 1)
gpg: key 48F77B2E: secret key imported
gpg: key 48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
Get:1 copy: ./ Release.gpg [316 B]
Get:2 copy: ./ Release [957 B]
Get:3 copy: ./ Sources [350 B]
Get:4 copy: ./ Packages [432 B]
Fetched 2055 B in 0s (24.1 kB/s)
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 706 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oMXHMx/apt_archive/ ./ sbuild-build-depends-core-dummy 0.invalid.0 [706 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 706 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11254 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texi2html, texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff4-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, openjdk-6-jdk, mpack
Filtered Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texi2html, texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff4-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, openjdk-6-jdk, mpack
dpkg-deb: building package `sbuild-build-depends-r-base-dummy' in `/<<BUILDDIR>>/resolver-oMXHMx/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-base-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Get:1 copy: ./ Release.gpg [316 B]
Get:2 copy: ./ Release [963 B]
Get:3 copy: ./ Sources [773 B]
Get:4 copy: ./ Packages [816 B]
Fetched 2868 B in 0s (32.1 kB/s)
Reading package lists...
Reading package lists...

Install r-base build dependencies (apt-based resolver)
------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bison bsdmainutils ca-certificates ca-certificates-java debhelper ed file
  fontconfig fontconfig-config fonts-comfortaa fonts-droid fonts-freefont-otf
  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot
  fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata
  fonts-junicode fonts-linuxlibertine fonts-oflb-asana-math fonts-sil-gentium
  fonts-sil-gentium-basic fonts-stix gettext gettext-base gfortran
  gfortran-4.6 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base
  html2text intltool-debian java-common libasound2 libasprintf0c2 libasyncns0
  libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
  libaudit0 libavahi-client3 libavahi-common-data libavahi-common3
  libbison-dev libblas-dev libblas3 libbz2-dev libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcap2 libcroco3
  libcups2 libcupsimage2 libdatrie1 libelf1 libexpat1 libexpat1-dev libffi5
  libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6
  libfreetype6-dev libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
  libgettextpo0 libgfortran3 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libgnutls26 libgpg-error0 libgraphite3 libgs9
  libgs9-common libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libice-dev
  libice6 libidn11 libijs-0.35 libjasper1 libjbig-dev libjbig0 libjbig2dec0
  libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1 libkpathsea6
  libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms1 liblcms2-2
  liblzma-dev libmagic1 libncurses5-dev libnspr4 libnss3 libogg0 libopenjpeg2
  libp11-kit0 libpango1.0-0 libpango1.0-dev libpaper-utils libpaper1 libpcre3
  libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-0 libpng12-dev libpoppler19 libpopt0 libptexenc1
  libpthread-stubs0 libpthread-stubs0-dev libpulse0 libreadline-dev
  libreadline6-dev libsm-dev libsm6 libsndfile1 libsqlite3-0 libssl1.0.0
  libtasn1-3 libthai-data libthai0 libtiff4 libtiff4-dev libtiffxx0c2
  libtinfo-dev libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6
  libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-render0
  libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1
  libxkbfile1 libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev
  libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 luatex m4 man-db
  mime-support mpack openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless
  openjdk-6-jre-lib openssl otf-freefont pkg-config po-debconf poppler-data
  preview-latex-style python python-minimal python2.7 python2.7-minimal
  shared-mime-info tcl8.5 tcl8.5-dev tex-common texi2html texinfo texlive-base
  texlive-binaries texlive-common texlive-doc-base texlive-extra-utils
  texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures tk8.5 tk8.5-dev ttf-dejavu-core ttf-dejavu-extra
  ttf-freefont ttf-marvosym tzdata tzdata-java ucf x11-common x11-xkb-utils
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc
  gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff default-jre equivs
  libasound2-plugins libcairo2-doc cups-common rng-tools libglib2.0-doc
  krb5-doc krb5-user librsvg2-common gvfs libice-doc libjasper-runtime
  liblcms-utils liblcms2-utils liblzma-doc ncurses-doc ttf-baekmuk
  ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
  ttf-arphic-bkai00mp libpango1.0-doc imagemagick pcscd pulseaudio libsm-doc
  libxcb-doc libxext-doc libxt-doc less www-browser mail-transport-agent inews
  openjdk-6-demo openjdk-6-source visualvm icedtea-plugin libnss-mdns
  sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei
  ttf-wqy-zenhei ttf-indic-fonts libmail-box-perl poppler-utils ghostscript
  fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core python-doc python-tk
  python2.7-doc binfmt-support tcl-tclreadline tcl8.5-doc latex2html
  texinfo-doc-nonfree perl-tk xpdf-reader pdf-viewer gv postscript-viewer
  purifyeps chktex latexmk dvipng xindy dvidvi fragmaster lacheck latexdiff
  cm-super libfile-which-perl dot2tex tk8.5-doc gvfs-bin xfs xserver
Recommended packages:
  texlive-xetex curl wget lynx-cur autopoint hicolor-icon-theme libgtk2.0-bin
  krb5-locales tcpd libx11-doc xml-core texlive-luatex icedtea-netx
  icedtea-6-jre-cacao icedtea-6-jre-jamvm libmail-sendmail-perl lmodern ruby
  wish texlive-fonts-extra-doc texlive-fonts-recommended-doc tex-gyre tipa
  texlive-latex-base-doc texlive-latex-extra-doc latex-xcolor
  texlive-latex-recommended-doc latex-beamer prosper texlive-pictures-doc pgf
  xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  bison bsdmainutils ca-certificates ca-certificates-java debhelper ed file
  fontconfig fontconfig-config fonts-comfortaa fonts-droid fonts-freefont-otf
  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot
  fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata
  fonts-junicode fonts-linuxlibertine fonts-oflb-asana-math fonts-sil-gentium
  fonts-sil-gentium-basic fonts-stix gettext gettext-base gfortran
  gfortran-4.6 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base
  html2text intltool-debian java-common libasound2 libasprintf0c2 libasyncns0
  libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
  libaudit0 libavahi-client3 libavahi-common-data libavahi-common3
  libbison-dev libblas-dev libblas3 libbz2-dev libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcap2 libcroco3
  libcups2 libcupsimage2 libdatrie1 libelf1 libexpat1 libexpat1-dev libffi5
  libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6
  libfreetype6-dev libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
  libgettextpo0 libgfortran3 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libgnutls26 libgpg-error0 libgraphite3 libgs9
  libgs9-common libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libice-dev
  libice6 libidn11 libijs-0.35 libjasper1 libjbig-dev libjbig0 libjbig2dec0
  libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1 libkpathsea6
  libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms1 liblcms2-2
  liblzma-dev libmagic1 libncurses5-dev libnspr4 libnss3 libogg0 libopenjpeg2
  libp11-kit0 libpango1.0-0 libpango1.0-dev libpaper-utils libpaper1 libpcre3
  libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-0 libpng12-dev libpoppler19 libpopt0 libptexenc1
  libpthread-stubs0 libpthread-stubs0-dev libpulse0 libreadline-dev
  libreadline6-dev libsm-dev libsm6 libsndfile1 libsqlite3-0 libssl1.0.0
  libtasn1-3 libthai-data libthai0 libtiff4 libtiff4-dev libtiffxx0c2
  libtinfo-dev libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6
  libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-render0
  libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1
  libxkbfile1 libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev
  libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 luatex m4 man-db
  mime-support mpack openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless
  openjdk-6-jre-lib openssl otf-freefont pkg-config po-debconf poppler-data
  preview-latex-style python python-minimal python2.7 python2.7-minimal
  sbuild-build-depends-r-base-dummy shared-mime-info tcl8.5 tcl8.5-dev
  tex-common texi2html texinfo texlive-base texlive-binaries texlive-common
  texlive-doc-base texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5
  tk8.5-dev ttf-dejavu-core ttf-dejavu-extra ttf-freefont ttf-marvosym
  tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev
  x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
The following packages will be upgraded:
  tzdata
1 upgraded, 258 newly installed, 0 to remove and 18 not upgraded.
Need to get 368 MB of archives.
After this operation, 981 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oMXHMx/apt_archive/ ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.0.1/private/ wheezy-staging/main libpcre3 armhf 1:8.30-5 [242 kB]
Get:3 http://172.17.0.1/private/ wheezy-staging/main libpipeline1 armhf 1.2.1-1 [35.0 kB]
Get:4 http://172.17.0.1/private/ wheezy-staging/main libpopt0 armhf 1.16-7 [56.5 kB]
Get:5 http://172.17.0.1/private/ wheezy-staging/main libssl1.0.0 armhf 1.0.1t-1+deb7u2 [1070 kB]
Get:6 http://172.17.0.1/private/ wheezy-staging/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
Get:7 http://172.17.0.1/private/ wheezy-staging/main libcap2 armhf 1:2.22-1.2 [12.5 kB]
Get:8 http://172.17.0.1/private/ wheezy-staging/main libgpg-error0 armhf 1.10-3.1 [78.5 kB]
Get:9 http://172.17.0.1/private/ wheezy-staging/main libgcrypt11 armhf 1.5.0-5+deb7u5 [302 kB]
Get:10 http://172.17.0.1/private/ wheezy-staging/main libp11-kit0 armhf 0.12-3 [48.2 kB]
Get:11 http://172.17.0.1/private/ wheezy-staging/main libtasn1-3 armhf 2.13-2+deb7u3 [63.8 kB]
Get:12 http://172.17.0.1/private/ wheezy-staging/main libgnutls26 armhf 2.12.20-8+deb7u3 [602 kB]
Get:13 http://172.17.0.1/private/ wheezy-staging/main libkeyutils1 armhf 1.5.5-3+deb7u1 [7880 B]
Get:14 http://172.17.0.1/private/ wheezy-staging/main libkrb5support0 armhf 1.10.1+dfsg-5+deb7u7 [47.0 kB]
Get:15 http://172.17.0.1/private/ wheezy-staging/main libk5crypto3 armhf 1.10.1+dfsg-5+deb7u7 [113 kB]
Get:16 http://172.17.0.1/private/ wheezy-staging/main libkrb5-3 armhf 1.10.1+dfsg-5+deb7u7 [343 kB]
Get:17 http://172.17.0.1/private/ wheezy-staging/main libgssapi-krb5-2 armhf 1.10.1+dfsg-5+deb7u7 [133 kB]
Get:18 http://172.17.0.1/private/ wheezy-staging/main libidn11 armhf 1.25-2+deb7u2 [176 kB]
Get:19 http://172.17.0.1/private/ wheezy-staging/main libmagic1 armhf 5.11-2+deb7u9 [201 kB]
Get:20 http://172.17.0.1/private/ wheezy-staging/main libsqlite3-0 armhf 3.7.13-1+deb7u3 [414 kB]
Get:21 http://172.17.0.1/private/ wheezy-staging/main libwrap0 armhf 7.6.q-24 [59.7 kB]
Get:22 http://172.17.0.1/private/ wheezy-staging/main libxml2 armhf 2.8.0+dfsg1-7+wheezy7 [826 kB]
Get:23 http://172.17.0.1/private/ wheezy-staging/main libasound2 armhf 1.0.25-4 [410 kB]
Get:24 http://172.17.0.1/private/ wheezy-staging/main libasyncns0 armhf 0.8-4 [12.8 kB]
Get:25 http://172.17.0.1/private/ wheezy-staging/main libffi5 armhf 3.0.10-3+b3 [22.9 kB]
Get:26 http://172.17.0.1/private/ wheezy-staging/main libglib2.0-0 armhf 2.33.12+really2.32.4-5 [1689 kB]
Get:27 http://172.17.0.1/private/ wheezy-staging/main libatk1.0-data all 2.4.0-2 [240 kB]
Get:28 http://172.17.0.1/private/ wheezy-staging/main libatk1.0-0 armhf 2.4.0-2 [86.8 kB]
Get:29 http://172.17.0.1/private/ wheezy-staging/main libexpat1 armhf 2.1.0-1+deb7u4 [118 kB]
Get:30 http://172.17.0.1/private/ wheezy-staging/main libfreetype6 armhf 2.4.9-1.1+deb7u4 [402 kB]
Get:31 http://172.17.0.1/private/ wheezy-staging/main ucf all 3.0025+nmu3 [70.8 kB]
Get:32 http://172.17.0.1/private/ wheezy-staging/main ttf-dejavu-core all 2.33-3 [1021 kB]
Get:33 http://172.17.0.1/private/ wheezy-staging/main fonts-freefont-ttf all 20120503-1 [6024 kB]
Get:34 http://172.17.0.1/private/ wheezy-staging/main ttf-freefont all 20120503-1 [118 kB]
Get:35 http://172.17.0.1/private/ wheezy-staging/main fontconfig-config all 2.9.0-7.1+deb7u1 [233 kB]
Get:36 http://172.17.0.1/private/ wheezy-staging/main libfontconfig1 armhf 2.9.0-7.1+deb7u1 [286 kB]
Get:37 http://172.17.0.1/private/ wheezy-staging/main libpixman-1-0 armhf 0.26.0-4+deb7u2 [413 kB]
Get:38 http://172.17.0.1/private/ wheezy-staging/main libpng12-0 armhf 1.2.49-1+deb7u2 [179 kB]
Get:39 http://172.17.0.1/private/ wheezy-staging/main libxau6 armhf 1:1.0.7-1 [17.6 kB]
Get:40 http://172.17.0.1/private/ wheezy-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:41 http://172.17.0.1/private/ wheezy-staging/main libxcb1 armhf 1.8.1-2+deb7u1 [42.8 kB]
Get:42 http://172.17.0.1/private/ wheezy-staging/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB]
Get:43 http://172.17.0.1/private/ wheezy-staging/main libx11-6 armhf 2:1.5.0-1+deb7u4 [838 kB]
Get:44 http://172.17.0.1/private/ wheezy-staging/main libxcb-render0 armhf 1.8.1-2+deb7u1 [16.4 kB]
Get:45 http://172.17.0.1/private/ wheezy-staging/main libxcb-shm0 armhf 1.8.1-2+deb7u1 [10.0 kB]
Get:46 http://172.17.0.1/private/ wheezy-staging/main libxrender1 armhf 1:0.9.7-1+deb7u3 [30.0 kB]
Get:47 http://172.17.0.1/private/ wheezy-staging/main libcairo2 armhf 1.12.2-3+deb7u1 [846 kB]
Get:48 http://172.17.0.1/private/ wheezy-staging/main libjpeg8 armhf 8d-1+deb7u1 [132 kB]
Get:49 http://172.17.0.1/private/ wheezy-staging/main libjasper1 armhf 1.900.1-13+deb7u5 [142 kB]
Get:50 http://172.17.0.1/private/ wheezy-staging/main libjbig0 armhf 2.0-2+deb7u1 [31.6 kB]
Get:51 http://172.17.0.1/private/ wheezy-staging/main libtiff4 armhf 3.9.6-11+deb7u3 [189 kB]
Get:52 http://172.17.0.1/private/ wheezy-staging/main libgdk-pixbuf2.0-common all 2.26.1-1+deb7u5 [288 kB]
Get:53 http://172.17.0.1/private/ wheezy-staging/main libgdk-pixbuf2.0-0 armhf 2.26.1-1+deb7u5 [142 kB]
Get:54 http://172.17.0.1/private/ wheezy-staging/main libgtk2.0-common all 2.24.10-2 [3081 kB]
Get:55 http://172.17.0.1/private/ wheezy-staging/main libavahi-common-data armhf 0.6.31-2 [137 kB]
Get:56 http://172.17.0.1/private/ wheezy-staging/main libavahi-common3 armhf 0.6.31-2 [52.6 kB]
Get:57 http://172.17.0.1/private/ wheezy-staging/main libavahi-client3 armhf 0.6.31-2 [55.4 kB]
Get:58 http://172.17.0.1/private/ wheezy-staging/main libcups2 armhf 1.5.3-5+deb7u6 [238 kB]
Get:59 http://172.17.0.1/private/ wheezy-staging/main libthai-data all 0.1.18-2 [154 kB]
Get:60 http://172.17.0.1/private/ wheezy-staging/main libdatrie1 armhf 0.2.5-3 [26.0 kB]
Get:61 http://172.17.0.1/private/ wheezy-staging/main libthai0 armhf 0.1.18-2 [39.7 kB]
Get:62 http://172.17.0.1/private/ wheezy-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:63 http://172.17.0.1/private/ wheezy-staging/main fontconfig armhf 2.9.0-7.1+deb7u1 [348 kB]
Get:64 http://172.17.0.1/private/ wheezy-staging/main libpango1.0-0 armhf 1.30.0-1 [417 kB]
Get:65 http://172.17.0.1/private/ wheezy-staging/main libxcomposite1 armhf 1:0.4.3-2 [16.2 kB]
Get:66 http://172.17.0.1/private/ wheezy-staging/main libxfixes3 armhf 1:5.0-4+deb7u2 [19.8 kB]
Get:67 http://172.17.0.1/private/ wheezy-staging/main libxcursor1 armhf 1:1.1.13-1+deb7u1 [23.8 kB]
Get:68 http://172.17.0.1/private/ wheezy-staging/main libxdamage1 armhf 1:1.1.3-2 [13.8 kB]
Get:69 http://172.17.0.1/private/ wheezy-staging/main libxext6 armhf 2:1.3.1-2+deb7u1 [48.7 kB]
Get:70 http://172.17.0.1/private/ wheezy-staging/main libxi6 armhf 2:1.6.1-1+deb7u3 [72.0 kB]
Get:71 http://172.17.0.1/private/ wheezy-staging/main libxinerama1 armhf 2:1.1.2-1+deb7u1 [16.2 kB]
Get:72 http://172.17.0.1/private/ wheezy-staging/main libxrandr2 armhf 2:1.3.2-2+deb7u2 [30.9 kB]
Get:73 http://172.17.0.1/private/ wheezy-staging/main shared-mime-info armhf 1.0-1 [1065 kB]
Get:74 http://172.17.0.1/private/ wheezy-staging/main libgtk2.0-0 armhf 2.24.10-2 [1893 kB]
Get:75 http://172.17.0.1/private/ wheezy-staging/main libatk-wrapper-java all 0.30.4-3 [31.2 kB]
Get:76 http://172.17.0.1/private/ wheezy-staging/main libatk-wrapper-java-jni armhf 0.30.4-3 [25.7 kB]
Get:77 http://172.17.0.1/private/ wheezy-staging/main libcairo-gobject2 armhf 1.12.2-3+deb7u1 [437 kB]
Get:78 http://172.17.0.1/private/ wheezy-staging/main libcairo-script-interpreter2 armhf 1.12.2-3+deb7u1 [472 kB]
Get:79 http://172.17.0.1/private/ wheezy-staging/main libcroco3 armhf 0.6.6-2 [119 kB]
Get:80 http://172.17.0.1/private/ wheezy-staging/main libcupsimage2 armhf 1.5.3-5+deb7u6 [132 kB]
Get:81 http://172.17.0.1/private/ wheezy-staging/main libogg0 armhf 1.3.0-4 [17.8 kB]
Get:82 http://172.17.0.1/private/ wheezy-staging/main libflac8 armhf 1.2.1-6+deb7u1 [144 kB]
Get:83 http://172.17.0.1/private/ wheezy-staging/main libfontenc1 armhf 1:1.1.1-1 [22.6 kB]
Get:84 http://172.17.0.1/private/ wheezy-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:85 http://172.17.0.1/private/ wheezy-staging/main libgettextpo0 armhf 0.18.1.1-9 [130 kB]
Get:86 http://172.17.0.1/private/ wheezy-staging/main libgfortran3 armhf 4.7.2-5+rpi1 [237 kB]
Get:87 http://172.17.0.1/private/ wheezy-staging/main libelf1 armhf 0.152-1+wheezy1 [300 kB]
Get:88 http://172.17.0.1/private/ wheezy-staging/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB]
Get:89 http://172.17.0.1/private/ wheezy-staging/main libglib2.0-bin armhf 2.33.12+really2.32.4-5 [867 kB]
Get:90 http://172.17.0.1/private/ wheezy-staging/main x11-common all 1:7.7+3~deb7u1 [284 kB]
Get:91 http://172.17.0.1/private/ wheezy-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:92 http://172.17.0.1/private/ wheezy-staging/main liblcms1 armhf 1.19.dfsg2-1.2+deb7u1 [98.8 kB]
Get:93 http://172.17.0.1/private/ wheezy-staging/main liblcms2-2 armhf 2.2+git20110628-2.2+deb7u2 [120 kB]
Get:94 http://172.17.0.1/private/ wheezy-staging/main libnspr4 armhf 2:4.12-1+deb7u1 [118 kB]
Get:95 http://172.17.0.1/private/ wheezy-staging/main libnss3 armhf 2:3.26-1+debu7u2 [909 kB]
Get:96 http://172.17.0.1/private/ wheezy-staging/main libpaper1 armhf 1.1.24+nmu2 [20.9 kB]
Get:97 http://172.17.0.1/private/ wheezy-staging/main libpcrecpp0 armhf 1:8.30-5 [124 kB]
Get:98 http://172.17.0.1/private/ wheezy-staging/main libpcsclite1 armhf 1.8.4-1+deb7u2 [54.0 kB]
Get:99 http://172.17.0.1/private/ wheezy-staging/main libopenjpeg2 armhf 1.3+dfsg-4.8 [76.2 kB]
Get:100 http://172.17.0.1/private/ wheezy-staging/main libpoppler19 armhf 0.18.4-6+deb7u1 [995 kB]
Get:101 http://172.17.0.1/private/ wheezy-staging/main libjson0 armhf 0.10-1.2 [22.1 kB]
Get:102 http://172.17.0.1/private/ wheezy-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:103 http://172.17.0.1/private/ wheezy-staging/main libvorbis0a armhf 1.3.2-1.3 [102 kB]
Get:104 http://172.17.0.1/private/ wheezy-staging/main libvorbisenc2 armhf 1.3.2-1.3 [120 kB]
Get:105 http://172.17.0.1/private/ wheezy-staging/main libsndfile1 armhf 1.0.25-5 [249 kB]
Get:106 http://172.17.0.1/private/ wheezy-staging/main libx11-xcb1 armhf 2:1.5.0-1+deb7u4 [139 kB]
Get:107 http://172.17.0.1/private/ wheezy-staging/main libxtst6 armhf 2:1.2.1-1+deb7u2 [25.4 kB]
Get:108 http://172.17.0.1/private/ wheezy-staging/main libpulse0 armhf 2.0-6.1 [196 kB]
Get:109 http://172.17.0.1/private/ wheezy-staging/main libtiffxx0c2 armhf 3.9.6-11+deb7u3 [63.7 kB]
Get:110 http://172.17.0.1/private/ wheezy-staging/main libxt6 armhf 1:1.1.3-1+deb7u1 [181 kB]
Get:111 http://172.17.0.1/private/ wheezy-staging/main libxmu6 armhf 2:1.1.1-1 [59.1 kB]
Get:112 http://172.17.0.1/private/ wheezy-staging/main libxpm4 armhf 1:3.5.10-1+deb7u1 [45.2 kB]
Get:113 http://172.17.0.1/private/ wheezy-staging/main libxaw7 armhf 2:1.0.10-2 [192 kB]
Get:114 http://172.17.0.1/private/ wheezy-staging/main libxkbfile1 armhf 1:1.0.8-1 [74.9 kB]
Get:115 http://172.17.0.1/private/ wheezy-staging/main libxmuu1 armhf 2:1.1.1-1 [23.0 kB]
Get:116 http://172.17.0.1/private/ wheezy-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:117 http://172.17.0.1/private/ wheezy-staging/main tex-common all 3.15 [640 kB]
Get:118 http://172.17.0.1/private/ wheezy-staging/main libkpathsea6 armhf 2012.20120628-4 [158 kB]
Get:119 http://172.17.0.1/private/ wheezy-staging/main luatex armhf 0.70.1.20120524-3 [2268 kB]
Get:120 http://172.17.0.1/private/ wheezy-staging/main openjdk-6-jre-lib all 6b38-1.13.10-1~deb7u1+rpi1 [6279 kB]
Get:121 http://172.17.0.1/private/ wheezy-staging/main openssl armhf 1.0.1t-1+deb7u2 [702 kB]
Get:122 http://172.17.0.1/private/ wheezy-staging/main ca-certificates all 20130119+deb7u1 [210 kB]
Get:123 http://172.17.0.1/private/ wheezy-staging/main ca-certificates-java all 20121112+nmu2 [14.9 kB]
Get:124 http://172.17.0.1/private/ wheezy-staging/main tzdata all 2017a-0+deb7u1 [488 kB]
Get:125 http://172.17.0.1/private/ wheezy-staging/main tzdata-java all 2017a-0+deb7u1 [137 kB]
Get:126 http://172.17.0.1/private/ wheezy-staging/main java-common all 0.47+deb7u2 [139 kB]
Get:127 http://172.17.0.1/private/ wheezy-staging/main openjdk-6-jre-headless armhf 6b38-1.13.10-1~deb7u1+rpi1 [30.7 MB]
Get:128 http://172.17.0.1/private/ wheezy-staging/main poppler-data all 0.4.5-10 [1479 kB]
Get:129 http://172.17.0.1/private/ wheezy-staging/main ttf-dejavu-extra all 2.33-3 [1759 kB]
Get:130 http://172.17.0.1/private/ wheezy-staging/main libjbig-dev armhf 2.0-2+deb7u1 [11.4 kB]
Get:131 http://172.17.0.1/private/ wheezy-staging/main bsdmainutils armhf 9.0.3 [207 kB]
Get:132 http://172.17.0.1/private/ wheezy-staging/main groff-base armhf 1.21-9 [1071 kB]
Get:133 http://172.17.0.1/private/ wheezy-staging/main man-db armhf 2.6.2-1 [1027 kB]
Get:134 http://172.17.0.1/private/ wheezy-staging/main file armhf 5.11-2+deb7u9 [53.2 kB]
Get:135 http://172.17.0.1/private/ wheezy-staging/main gettext-base armhf 0.18.1.1-9 [138 kB]
Get:136 http://172.17.0.1/private/ wheezy-staging/main m4 armhf 1.4.16-3 [246 kB]
Get:137 http://172.17.0.1/private/ wheezy-staging/main mime-support all 3.52-1+deb7u1 [35.5 kB]
Get:138 http://172.17.0.1/private/ wheezy-staging/main python2.7-minimal armhf 2.7.3-6+deb7u3 [1660 kB]
Get:139 http://172.17.0.1/private/ wheezy-staging/main python2.7 armhf 2.7.3-6+deb7u3 [2671 kB]
Get:140 http://172.17.0.1/private/ wheezy-staging/main python-minimal all 2.7.3-4+deb7u1 [42.8 kB]
Get:141 http://172.17.0.1/private/ wheezy-staging/main python all 2.7.3-4+deb7u1 [181 kB]
Get:142 http://172.17.0.1/private/ wheezy-staging/main texinfo armhf 4.13a.dfsg.1-10 [960 kB]
Get:143 http://172.17.0.1/private/ wheezy-staging/main libbison-dev armhf 1:2.5.dfsg-2.1 [289 kB]
Get:144 http://172.17.0.1/private/ wheezy-staging/main bison armhf 1:2.5.dfsg-2.1 [669 kB]
Get:145 http://172.17.0.1/private/ wheezy-staging/main html2text armhf 1.3.2a-15 [98.5 kB]
Get:146 http://172.17.0.1/private/ wheezy-staging/main gettext armhf 0.18.1.1-9 [1879 kB]
Get:147 http://172.17.0.1/private/ wheezy-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:148 http://172.17.0.1/private/ wheezy-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:149 http://172.17.0.1/private/ wheezy-staging/main debhelper all 9.20120909 [705 kB]
Get:150 http://172.17.0.1/private/ wheezy-staging/main ed armhf 1.6-2 [53.5 kB]
Get:151 http://172.17.0.1/private/ wheezy-staging/main fonts-comfortaa all 1.5-2 [272 kB]
Get:152 http://172.17.0.1/private/ wheezy-staging/main fonts-droid all 20111207+git-1 [4312 kB]
Get:153 http://172.17.0.1/private/ wheezy-staging/main fonts-freefont-otf all 20120503-1 [4428 kB]
Get:154 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-artemisia all 1.1-4 [339 kB]
Get:155 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-complutum all 1.1-5 [47.9 kB]
Get:156 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-didot all 1.1-5 [371 kB]
Get:157 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-neohellenic all 1.1-4 [282 kB]
Get:158 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-olga all 1.1-3 [36.0 kB]
Get:159 http://172.17.0.1/private/ wheezy-staging/main fonts-gfs-solomos all 1.1-4 [46.1 kB]
Get:160 http://172.17.0.1/private/ wheezy-staging/main fonts-inconsolata all 001.010-4 [65.6 kB]
Get:161 http://172.17.0.1/private/ wheezy-staging/main fonts-junicode all 0.7.6-1 [1046 kB]
Get:162 http://172.17.0.1/private/ wheezy-staging/main fonts-linuxlibertine all 5.1.3-1 [12.8 MB]
Get:163 http://172.17.0.1/private/ wheezy-staging/main fonts-oflb-asana-math all 000.907-4 [297 kB]
Get:164 http://172.17.0.1/private/ wheezy-staging/main fonts-sil-gentium all 20081126:1.02-12 [685 kB]
Get:165 http://172.17.0.1/private/ wheezy-staging/main fonts-sil-gentium-basic all 1.1-5 [871 kB]
Get:166 http://172.17.0.1/private/ wheezy-staging/main gfortran-4.6 armhf 4.6.3-14+rpi1 [4833 kB]
Get:167 http://172.17.0.1/private/ wheezy-staging/main gfortran armhf 4:4.6.3-8 [1134 B]
Get:168 http://172.17.0.1/private/ wheezy-staging/main libgirepository-1.0-1 armhf 1.32.1-1 [96.0 kB]
Get:169 http://172.17.0.1/private/ wheezy-staging/main gir1.2-glib-2.0 armhf 1.32.1-1 [170 kB]
Get:170 http://172.17.0.1/private/ wheezy-staging/main gir1.2-freedesktop armhf 1.32.1-1 [19.9 kB]
Get:171 http://172.17.0.1/private/ wheezy-staging/main gir1.2-pango-1.0 armhf 1.30.0-1 [151 kB]
Get:172 http://172.17.0.1/private/ wheezy-staging/main libaudit0 armhf 1:1.7.18-1.1 [61.0 kB]
Get:173 http://172.17.0.1/private/ wheezy-staging/main libblas3 armhf 1.2.20110419-5 [201 kB]
Get:174 http://172.17.0.1/private/ wheezy-staging/main libblas-dev armhf 1.2.20110419-5 [206 kB]
Get:175 http://172.17.0.1/private/ wheezy-staging/main libbz2-dev armhf 1.0.6-4 [33.9 kB]
Get:176 http://172.17.0.1/private/ wheezy-staging/main libexpat1-dev armhf 2.1.0-1+deb7u4 [211 kB]
Get:177 http://172.17.0.1/private/ wheezy-staging/main zlib1g-dev armhf 1:1.2.7.dfsg-13 [212 kB]
Get:178 http://172.17.0.1/private/ wheezy-staging/main libfreetype6-dev armhf 2.4.9-1.1+deb7u4 [748 kB]
Get:179 http://172.17.0.1/private/ wheezy-staging/main pkg-config armhf 0.26-1 [56.9 kB]
Get:180 http://172.17.0.1/private/ wheezy-staging/main libfontconfig1-dev armhf 2.9.0-7.1+deb7u1 [840 kB]
Get:181 http://172.17.0.1/private/ wheezy-staging/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB]
Get:182 http://172.17.0.1/private/ wheezy-staging/main x11proto-core-dev all 7.0.23-1 [774 kB]
Get:183 http://172.17.0.1/private/ wheezy-staging/main libxau-dev armhf 1:1.0.7-1 [21.0 kB]
Get:184 http://172.17.0.1/private/ wheezy-staging/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB]
Get:185 http://172.17.0.1/private/ wheezy-staging/main x11proto-input-dev all 2.2-1 [172 kB]
Get:186 http://172.17.0.1/private/ wheezy-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:187 http://172.17.0.1/private/ wheezy-staging/main xtrans-dev all 1.2.7-1 [112 kB]
Get:188 http://172.17.0.1/private/ wheezy-staging/main libpthread-stubs0 armhf 0.3-3 [3230 B]
Get:189 http://172.17.0.1/private/ wheezy-staging/main libpthread-stubs0-dev armhf 0.3-3 [3996 B]
Get:190 http://172.17.0.1/private/ wheezy-staging/main libxcb1-dev armhf 1.8.1-2+deb7u1 [81.6 kB]
Get:191 http://172.17.0.1/private/ wheezy-staging/main libx11-dev armhf 2:1.5.0-1+deb7u4 [957 kB]
Get:192 http://172.17.0.1/private/ wheezy-staging/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB]
Get:193 http://172.17.0.1/private/ wheezy-staging/main libxrender-dev armhf 1:0.9.7-1+deb7u3 [38.4 kB]
Get:194 http://172.17.0.1/private/ wheezy-staging/main libpng12-dev armhf 1.2.49-1+deb7u2 [260 kB]
Get:195 http://172.17.0.1/private/ wheezy-staging/main libice-dev armhf 2:1.0.8-2 [65.9 kB]
Get:196 http://172.17.0.1/private/ wheezy-staging/main libsm-dev armhf 2:1.2.1-2 [35.6 kB]
Get:197 http://172.17.0.1/private/ wheezy-staging/main libpixman-1-dev armhf 0.26.0-4+deb7u2 [439 kB]
Get:198 http://172.17.0.1/private/ wheezy-staging/main libxcb-render0-dev armhf 1.8.1-2+deb7u1 [24.8 kB]
Get:199 http://172.17.0.1/private/ wheezy-staging/main libxcb-shm0-dev armhf 1.8.1-2+deb7u1 [11.7 kB]
Get:200 http://172.17.0.1/private/ wheezy-staging/main libpcre3-dev armhf 1:8.30-5 [343 kB]
Get:201 http://172.17.0.1/private/ wheezy-staging/main libglib2.0-dev armhf 2.33.12+really2.32.4-5 [1888 kB]
Get:202 http://172.17.0.1/private/ wheezy-staging/main libcairo2-dev armhf 1.12.2-3+deb7u1 [1052 kB]
Get:203 http://172.17.0.1/private/ wheezy-staging/main libgraphite3 armhf 1:2.3.1-0.2 [166 kB]
Get:204 http://172.17.0.1/private/ wheezy-staging/main libijs-0.35 armhf 0.35-8 [19.0 kB]
Get:205 http://172.17.0.1/private/ wheezy-staging/main libjbig2dec0 armhf 0.11+20120125-1 [46.4 kB]
Get:206 http://172.17.0.1/private/ wheezy-staging/main libgs9-common all 9.05~dfsg-6.3+deb7u4 [1980 kB]
Get:207 http://172.17.0.1/private/ wheezy-staging/main libgs9 armhf 9.05~dfsg-6.3+deb7u4 [1547 kB]
Get:208 http://172.17.0.1/private/ wheezy-staging/main libjpeg8-dev armhf 8d-1+deb7u1 [238 kB]
Get:209 http://172.17.0.1/private/ wheezy-staging/main liblapack3 armhf 3.4.1+dfsg-1+deb70u1 [3555 kB]
Get:210 http://172.17.0.1/private/ wheezy-staging/main liblapack-dev armhf 3.4.1+dfsg-1+deb70u1 [3860 kB]
Get:211 http://172.17.0.1/private/ wheezy-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2 [272 kB]
Get:212 http://172.17.0.1/private/ wheezy-staging/main libtinfo-dev armhf 5.9-10 [89.6 kB]
Get:213 http://172.17.0.1/private/ wheezy-staging/main libncurses5-dev armhf 5.9-10 [202 kB]
Get:214 http://172.17.0.1/private/ wheezy-staging/main libxft-dev armhf 2.3.1-1 [68.1 kB]
Get:215 http://172.17.0.1/private/ wheezy-staging/main libpango1.0-dev armhf 1.30.0-1 [573 kB]
Get:216 http://172.17.0.1/private/ wheezy-staging/main libpaper-utils armhf 1.1.24+nmu2 [17.9 kB]
Get:217 http://172.17.0.1/private/ wheezy-staging/main libptexenc1 armhf 2012.20120628-4 [53.0 kB]
Get:218 http://172.17.0.1/private/ wheezy-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:219 http://172.17.0.1/private/ wheezy-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:220 http://172.17.0.1/private/ wheezy-staging/main libtiff4-dev armhf 3.9.6-11+deb7u3 [320 kB]
Get:221 http://172.17.0.1/private/ wheezy-staging/main x11proto-xext-dev all 7.2.1-1 [273 kB]
Get:222 http://172.17.0.1/private/ wheezy-staging/main libxext-dev armhf 2:1.3.1-2+deb7u1 [108 kB]
Get:223 http://172.17.0.1/private/ wheezy-staging/main libxfont1 armhf 1:1.4.5-5 [148 kB]
Get:224 http://172.17.0.1/private/ wheezy-staging/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:225 http://172.17.0.1/private/ wheezy-staging/main libxss-dev armhf 1:1.2.2-1 [22.7 kB]
Get:226 http://172.17.0.1/private/ wheezy-staging/main libxt-dev armhf 1:1.1.3-1+deb7u1 [477 kB]
Get:227 http://172.17.0.1/private/ wheezy-staging/main mpack armhf 1.6-8 [38.4 kB]
Get:228 http://172.17.0.1/private/ wheezy-staging/main openjdk-6-jre armhf 6b38-1.13.10-1~deb7u1+rpi1 [259 kB]
Get:229 http://172.17.0.1/private/ wheezy-staging/main openjdk-6-jdk armhf 6b38-1.13.10-1~deb7u1+rpi1 [13.6 MB]
Get:230 http://172.17.0.1/private/ wheezy-staging/main preview-latex-style all 11.86-11 [310 kB]
Get:231 http://172.17.0.1/private/ wheezy-staging/main tcl8.5 armhf 8.5.11-2 [1569 kB]
Get:232 http://172.17.0.1/private/ wheezy-staging/main tcl8.5-dev armhf 8.5.11-2 [1013 kB]
Get:233 http://172.17.0.1/private/ wheezy-staging/main texi2html all 1.82+dfsg1-1 [447 kB]
Get:234 http://172.17.0.1/private/ wheezy-staging/main texlive-common all 2012.20120611-5+deb7u1 [200 kB]
Get:235 http://172.17.0.1/private/ wheezy-staging/main texlive-doc-base all 2012.20120611-1 [1651 kB]
Get:236 http://172.17.0.1/private/ wheezy-staging/main texlive-binaries armhf 2012.20120628-4 [16.8 MB]
Get:237 http://172.17.0.1/private/ wheezy-staging/main xdg-utils all 1.1.0~rc1+git20111210-6+deb7u3 [82.5 kB]
Get:238 http://172.17.0.1/private/ wheezy-staging/main texlive-base all 2012.20120611-5+deb7u1 [14.2 MB]
Get:239 http://172.17.0.1/private/ wheezy-staging/main texlive-extra-utils all 2012.20120611-2 [2548 kB]
Get:240 http://172.17.0.1/private/ wheezy-staging/main otf-freefont all 20120503-1 [118 kB]
Get:241 http://172.17.0.1/private/ wheezy-staging/main fonts-stix all 1.1.0-1 [763 kB]
Get:242 http://172.17.0.1/private/ wheezy-staging/main texlive-fonts-extra all 2012.20120611-2 [130 MB]
Get:243 http://172.17.0.1/private/ wheezy-staging/main ttf-marvosym all 0.1+dfsg-2 [46.8 kB]
Get:244 http://172.17.0.1/private/ wheezy-staging/main texlive-fonts-recommended all 2012.20120611-5+deb7u1 [5489 kB]
Get:245 http://172.17.0.1/private/ wheezy-staging/main texlive-generic-recommended all 2012.20120611-5+deb7u1 [2139 kB]
Get:246 http://172.17.0.1/private/ wheezy-staging/main texlive-latex-base all 2012.20120611-5+deb7u1 [895 kB]
Get:247 http://172.17.0.1/private/ wheezy-staging/main texlive-latex-recommended all 2012.20120611-5+deb7u1 [6842 kB]
Get:248 http://172.17.0.1/private/ wheezy-staging/main texlive-pictures all 2012.20120611-5+deb7u1 [2275 kB]
Get:249 http://172.17.0.1/private/ wheezy-staging/main texlive-latex-extra all 2012.20120611-2 [6397 kB]
Get:250 http://172.17.0.1/private/ wheezy-staging/main tk8.5 armhf 8.5.11-2 [1121 kB]
Get:251 http://172.17.0.1/private/ wheezy-staging/main tk8.5-dev armhf 8.5.11-2 [934 kB]
Get:252 http://172.17.0.1/private/ wheezy-staging/main x11-xkb-utils armhf 7.7~1 [178 kB]
Get:253 http://172.17.0.1/private/ wheezy-staging/main xauth armhf 1:1.0.7-1 [34.9 kB]
Get:254 http://172.17.0.1/private/ wheezy-staging/main xfonts-encodings all 1:1.0.4-1 [584 kB]
Get:255 http://172.17.0.1/private/ wheezy-staging/main xfonts-utils armhf 1:7.7~1 [92.2 kB]
Get:256 http://172.17.0.1/private/ wheezy-staging/main xfonts-base all 1:1.0.3 [6181 kB]
Get:257 http://172.17.0.1/private/ wheezy-staging/main xkb-data all 2.5.1-3 [645 kB]
Get:258 http://172.17.0.1/private/ wheezy-staging/main xserver-common all 2:1.12.4-6+deb7u6 [1397 kB]
Get:259 http://172.17.0.1/private/ wheezy-staging/main xvfb armhf 2:1.12.4-6+deb7u6 [853 kB]
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Selecting previously unselected package x11-xkb-utils.
Unpacking x11-xkb-utils (from .../x11-xkb-utils_7.7~1_armhf.deb) ...
Selecting previously unselected package xauth.
Unpacking xauth (from .../xauth_1%3a1.0.7-1_armhf.deb) ...
Selecting previously unselected package xfonts-encodings.
Unpacking xfonts-encodings (from .../xfonts-encodings_1%3a1.0.4-1_all.deb) ...
Selecting previously unselected package xfonts-utils.
Unpacking xfonts-utils (from .../xfonts-utils_1%3a7.7~1_armhf.deb) ...
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Selecting previously unselected package xvfb.
Unpacking xvfb (from .../xvfb_2%3a1.12.4-6+deb7u6_armhf.deb) ...
Selecting previously unselected package sbuild-build-depends-r-base-dummy.
Unpacking sbuild-build-depends-r-base-dummy (from .../sbuild-build-depends-r-base-dummy_0.invalid.0_armhf.deb) ...
Setting up libpcre3:armhf (1:8.30-5) ...
Setting up libpipeline1:armhf (1.2.1-1) ...
Setting up libpopt0:armhf (1.16-7) ...
Setting up libssl1.0.0:armhf (1.0.1t-1+deb7u2) ...
Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
Setting up libcap2:armhf (1:2.22-1.2) ...
Setting up libgpg-error0:armhf (1.10-3.1) ...
Setting up libgcrypt11:armhf (1.5.0-5+deb7u5) ...
Setting up libp11-kit0:armhf (0.12-3) ...
Setting up libtasn1-3:armhf (2.13-2+deb7u3) ...
Setting up libgnutls26:armhf (2.12.20-8+deb7u3) ...
Setting up libkeyutils1:armhf (1.5.5-3+deb7u1) ...
Setting up libkrb5support0:armhf (1.10.1+dfsg-5+deb7u7) ...
Setting up libk5crypto3:armhf (1.10.1+dfsg-5+deb7u7) ...
Setting up libkrb5-3:armhf (1.10.1+dfsg-5+deb7u7) ...
Setting up libgssapi-krb5-2:armhf (1.10.1+dfsg-5+deb7u7) ...
Setting up libidn11:armhf (1.25-2+deb7u2) ...
Setting up libmagic1:armhf (5.11-2+deb7u9) ...
Setting up libsqlite3-0:armhf (3.7.13-1+deb7u3) ...
Setting up libwrap0:armhf (7.6.q-24) ...
Setting up libxml2:armhf (2.8.0+dfsg1-7+wheezy7) ...
Setting up libasound2:armhf (1.0.25-4) ...
Setting up libasyncns0:armhf (0.8-4) ...
Setting up libffi5:armhf (3.0.10-3+b3) ...
Setting up libglib2.0-0:armhf (2.33.12+really2.32.4-5) ...
No schema files found: doing nothing.
Setting up libatk1.0-data (2.4.0-2) ...
Setting up libatk1.0-0:armhf (2.4.0-2) ...
Setting up libexpat1:armhf (2.1.0-1+deb7u4) ...
Setting up libfreetype6:armhf (2.4.9-1.1+deb7u4) ...
Setting up ucf (3.0025+nmu3) ...
Setting up ttf-dejavu-core (2.33-3) ...
Setting up fonts-freefont-ttf (20120503-1) ...
Setting up ttf-freefont (20120503-1) ...
Setting up fontconfig-config (2.9.0-7.1+deb7u1) ...
Setting up libfontconfig1:armhf (2.9.0-7.1+deb7u1) ...
Setting up libpixman-1-0:armhf (0.26.0-4+deb7u2) ...
Setting up libpng12-0:armhf (1.2.49-1+deb7u2) ...
Setting up libxau6:armhf (1:1.0.7-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
Setting up libxcb1:armhf (1.8.1-2+deb7u1) ...
Setting up libx11-data (2:1.5.0-1+deb7u4) ...
Setting up libx11-6:armhf (2:1.5.0-1+deb7u4) ...
Setting up libxcb-render0:armhf (1.8.1-2+deb7u1) ...
Setting up libxcb-shm0:armhf (1.8.1-2+deb7u1) ...
Setting up libxrender1:armhf (1:0.9.7-1+deb7u3) ...
Setting up libcairo2:armhf (1.12.2-3+deb7u1) ...
Setting up libjpeg8:armhf (8d-1+deb7u1) ...
Setting up libjasper1:armhf (1.900.1-13+deb7u5) ...
Setting up libjbig0:armhf (2.0-2+deb7u1) ...
Setting up libtiff4:armhf (3.9.6-11+deb7u3) ...
Setting up libgdk-pixbuf2.0-common (2.26.1-1+deb7u5) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.26.1-1+deb7u5) ...
Setting up libgtk2.0-common (2.24.10-2) ...
Setting up libavahi-common-data:armhf (0.6.31-2) ...
Setting up libavahi-common3:armhf (0.6.31-2) ...
Setting up libavahi-client3:armhf (0.6.31-2) ...
Setting up libcups2:armhf (1.5.3-5+deb7u6) ...
Setting up libthai-data (0.1.18-2) ...
Setting up libdatrie1:armhf (0.2.5-3) ...
Setting up libthai0:armhf (0.1.18-2) ...
Setting up libxft2:armhf (2.3.1-1) ...
Setting up fontconfig (2.9.0-7.1+deb7u1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:armhf (1.30.0-1) ...
Setting up libxcomposite1:armhf (1:0.4.3-2) ...
Setting up libxfixes3:armhf (1:5.0-4+deb7u2) ...
Setting up libxcursor1:armhf (1:1.1.13-1+deb7u1) ...
Setting up libxdamage1:armhf (1:1.1.3-2) ...
Setting up libxext6:armhf (2:1.3.1-2+deb7u1) ...
Setting up libxi6:armhf (2:1.6.1-1+deb7u3) ...
Setting up libxinerama1:armhf (2:1.1.2-1+deb7u1) ...
Setting up libxrandr2:armhf (2:1.3.2-2+deb7u2) ...
Setting up shared-mime-info (1.0-1) ...
Setting up libgtk2.0-0:armhf (2.24.10-2) ...
Setting up libatk-wrapper-java (0.30.4-3) ...
Setting up libatk-wrapper-java-jni:armhf (0.30.4-3) ...
Setting up libcairo-gobject2:armhf (1.12.2-3+deb7u1) ...
Setting up libcairo-script-interpreter2:armhf (1.12.2-3+deb7u1) ...
Setting up libcroco3:armhf (0.6.6-2) ...
Setting up libcupsimage2:armhf (1.5.3-5+deb7u6) ...
Setting up libogg0:armhf (1.3.0-4) ...
Setting up libflac8:armhf (1.2.1-6+deb7u1) ...
Setting up libfontenc1:armhf (1:1.1.1-1) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libgettextpo0:armhf (0.18.1.1-9) ...
Setting up libgfortran3:armhf (4.7.2-5+rpi1) ...
Setting up libelf1 (0.152-1+wheezy1) ...
Setting up libglib2.0-data (2.33.12+really2.32.4-5) ...
Setting up libglib2.0-bin (2.33.12+really2.32.4-5) ...
Setting up x11-common (1:7.7+3~deb7u1) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up liblcms1:armhf (1.19.dfsg2-1.2+deb7u1) ...
Setting up liblcms2-2:armhf (2.2+git20110628-2.2+deb7u2) ...
Setting up libnspr4:armhf (2:4.12-1+deb7u1) ...
Setting up libnss3:armhf (2:3.26-1+debu7u2) ...
Setting up libpaper1:armhf (1.1.24+nmu2) ...

Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (1:8.30-5) ...
Setting up libpcsclite1:armhf (1.8.4-1+deb7u2) ...
Setting up libopenjpeg2:armhf (1.3+dfsg-4.8) ...
Setting up libpoppler19:armhf (0.18.4-6+deb7u1) ...
Setting up libjson0:armhf (0.10-1.2) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libvorbis0a:armhf (1.3.2-1.3) ...
Setting up libvorbisenc2:armhf (1.3.2-1.3) ...
Setting up libsndfile1:armhf (1.0.25-5) ...
Setting up libx11-xcb1:armhf (2:1.5.0-1+deb7u4) ...
Setting up libxtst6:armhf (2:1.2.1-1+deb7u2) ...
Setting up libpulse0:armhf (2.0-6.1) ...
Setting up libtiffxx0c2:armhf (3.9.6-11+deb7u3) ...
Setting up libxt6:armhf (1:1.1.3-1+deb7u1) ...
Setting up libxmu6:armhf (2:1.1.1-1) ...
Setting up libxpm4:armhf (1:3.5.10-1+deb7u1) ...
Setting up libxaw7:armhf (2:1.0.10-2) ...
Setting up libxkbfile1:armhf (1:1.0.8-1) ...
Setting up libxmuu1:armhf (2:1.1.1-1) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up tex-common (3.15) ...
Running mktexlsr. This may take some time... done.
texlive-base is not ready, delaying updmap-sys call
texlive-base is not ready, skipping fmtutil-sys --all call
Setting up libkpathsea6 (2012.20120628-4) ...
Setting up luatex (0.70.1.20120524-3) ...
texlive-base is not ready, cannot create formats
Setting up openssl (1.0.1t-1+deb7u2) ...
Setting up ca-certificates (20130119+deb7u1) ...
Setting up tzdata-java (2017a-0+deb7u1) ...
Setting up java-common (0.47+deb7u2) ...
Setting up poppler-data (0.4.5-10) ...
Setting up ttf-dejavu-extra (2.33-3) ...
Setting up libjbig-dev:armhf (2.0-2+deb7u1) ...
Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up groff-base (1.21-9) ...
Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-2+deb7u9) ...
Setting up gettext-base (0.18.1.1-9) ...
Setting up m4 (1.4.16-3) ...
Setting up mime-support (3.52-1+deb7u1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up python2.7-minimal (2.7.3-6+deb7u3) ...
Setting up python2.7 (2.7.3-6+deb7u3) ...
Setting up python-minimal (2.7.3-4+deb7u1) ...
Setting up python (2.7.3-4+deb7u1) ...
Setting up texinfo (4.13a.dfsg.1-10) ...
Running mktexlsr. This may take some time. ... done.
Setting up libbison-dev:armhf (1:2.5.dfsg-2.1) ...
Setting up bison (1:2.5.dfsg-2.1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120909) ...
Setting up ed (1.6-2) ...
Setting up fonts-comfortaa (1.5-2) ...
Setting up fonts-droid (20111207+git-1) ...
Setting up fonts-freefont-otf (20120503-1) ...
Setting up fonts-gfs-artemisia (1.1-4) ...
Setting up fonts-gfs-complutum (1.1-5) ...
Setting up fonts-gfs-didot (1.1-5) ...
Setting up fonts-gfs-neohellenic (1.1-4) ...
Setting up fonts-gfs-olga (1.1-3) ...
Setting up fonts-gfs-solomos (1.1-4) ...
Setting up fonts-inconsolata (001.010-4) ...
Setting up fonts-junicode (0.7.6-1) ...
Setting up fonts-linuxlibertine (5.1.3-1) ...
Setting up fonts-oflb-asana-math (000.907-4) ...
Setting up fonts-sil-gentium (20081126:1.02-12) ...
Setting up fonts-sil-gentium-basic (1.1-5) ...
Setting up gfortran-4.6 (4.6.3-14+rpi1) ...
Setting up gfortran (4:4.6.3-8) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
Setting up libgirepository-1.0-1 (1.32.1-1) ...
Setting up gir1.2-glib-2.0 (1.32.1-1) ...
Setting up gir1.2-freedesktop (1.32.1-1) ...
Setting up gir1.2-pango-1.0 (1.30.0-1) ...
Setting up libaudit0 (1:1.7.18-1.1) ...
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-4) ...
Setting up libexpat1-dev (2.1.0-1+deb7u4) ...
Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ...
Setting up libfreetype6-dev (2.4.9-1.1+deb7u4) ...
Setting up pkg-config (0.26-1) ...
Setting up libfontconfig1-dev (2.9.0-7.1+deb7u1) ...
Setting up xorg-sgml-doctools (1:1.10-1) ...
Setting up x11proto-core-dev (7.0.23-1) ...
Setting up libxau-dev:armhf (1:1.0.7-1) ...
Setting up libxdmcp-dev:armhf (1:1.1.1-1) ...
Setting up x11proto-input-dev (2.2-1) ...
Setting up x11proto-kb-dev (1.0.6-2) ...
Setting up xtrans-dev (1.2.7-1) ...
Setting up libpthread-stubs0:armhf (0.3-3) ...
Setting up libpthread-stubs0-dev:armhf (0.3-3) ...
Setting up libxcb1-dev:armhf (1.8.1-2+deb7u1) ...
Setting up libx11-dev:armhf (2:1.5.0-1+deb7u4) ...
Setting up x11proto-render-dev (2:0.11.1-2) ...
Setting up libxrender-dev:armhf (1:0.9.7-1+deb7u3) ...
Setting up libpng12-dev (1.2.49-1+deb7u2) ...
Setting up libice-dev:armhf (2:1.0.8-2) ...
Setting up libsm-dev:armhf (2:1.2.1-2) ...
Setting up libpixman-1-dev (0.26.0-4+deb7u2) ...
Setting up libxcb-render0-dev:armhf (1.8.1-2+deb7u1) ...
Setting up libxcb-shm0-dev:armhf (1.8.1-2+deb7u1) ...
Setting up libpcre3-dev (1:8.30-5) ...
Setting up libglib2.0-dev (2.33.12+really2.32.4-5) ...
Setting up libcairo2-dev (1.12.2-3+deb7u1) ...
Setting up libgraphite3 (1:2.3.1-0.2) ...
Setting up libijs-0.35 (0.35-8) ...
Setting up libjbig2dec0 (0.11+20120125-1) ...
Setting up libgs9-common (9.05~dfsg-6.3+deb7u4) ...
Setting up libgs9 (9.05~dfsg-6.3+deb7u4) ...
Setting up libjpeg8-dev:armhf (8d-1+deb7u1) ...
Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.4.1+dfsg-1+deb70u1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2) ...
Setting up libtinfo-dev:armhf (5.9-10) ...
Setting up libncurses5-dev (5.9-10) ...
Setting up libxft-dev (2.3.1-1) ...
Setting up libpango1.0-dev (1.30.0-1) ...
Setting up libpaper-utils (1.1.24+nmu2) ...
Setting up libptexenc1 (2012.20120628-4) ...
Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
Setting up libtiff4-dev (3.9.6-11+deb7u3) ...
Setting up x11proto-xext-dev (7.2.1-1) ...
Setting up libxext-dev:armhf (2:1.3.1-2+deb7u1) ...
Setting up libxfont1 (1:1.4.5-5) ...
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:armhf (1:1.2.2-1) ...
Setting up libxt-dev:armhf (1:1.1.3-1+deb7u1) ...
Setting up mpack (1.6-8) ...
Setting up preview-latex-style (11.86-11) ...
Setting up tcl8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
Setting up tcl8.5-dev (8.5.11-2) ...
Setting up texi2html (1.82+dfsg1-1) ...
Setting up texlive-common (2012.20120611-5+deb7u1) ...
Setting up texlive-doc-base (2012.20120611-1) ...
Setting up texlive-binaries (2012.20120628-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Building format(s) --refresh.
	This may take some time... done.
Setting up xdg-utils (1.1.0~rc1+git20111210-6+deb7u3) ...
Setting up otf-freefont (20120503-1) ...
Setting up fonts-stix (1.1.0-1) ...
Setting up ttf-marvosym (0.1+dfsg-2) ...
Setting up tk8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
Setting up tk8.5-dev (8.5.11-2) ...
Setting up x11-xkb-utils (7.7~1) ...
Setting up xauth (1:1.0.7-1) ...
Setting up xfonts-encodings (1:1.0.4-1) ...
Setting up xfonts-utils (1:7.7~1) ...
Setting up xfonts-base (1:1.0.3) ...
Setting up xkb-data (2.5.1-3) ...
Setting up xserver-common (2:1.12.4-6+deb7u6) ...
Setting up xvfb (2:1.12.4-6+deb7u6) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Setting up texlive-base (2012.20120611-5+deb7u1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Running mktexlsr. This may take some time... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for tex-common ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-fonts-recommended (2012.20120611-5+deb7u1) ...
Setting up texlive-generic-recommended (2012.20120611-5+deb7u1) ...
Setting up texlive-latex-base (2012.20120611-5+deb7u1) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Setting up texlive-pictures (2012.20120611-5+deb7u1) ...
Setting up texlive-extra-utils (2012.20120611-2) ...
Setting up texlive-fonts-extra (2012.20120611-2) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-recommended (2012.20120611-5+deb7u1) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Setting up texlive-latex-extra (2012.20120611-2) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up openjdk-6-jre-headless:armhf (6b38-1.13.10-1~deb7u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20121112+nmu2) ...
done.
Setting up openjdk-6-jre:armhf (6b38-1.13.10-1~deb7u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up openjdk-6-jdk:armhf (6b38-1.13.10-1~deb7u1+rpi1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-6-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Setting up openjdk-6-jre-lib (6b38-1.13.10-1~deb7u1+rpi1) ...
Processing triggers for ca-certificates ...
Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:cacert.org.pem
Adding debian:ca.pem
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-ca-2003.pem
Adding debian:spi-cacert-2008.pem
done.
done.

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.22-8+deb7u2 dpkg-dev_1.16.15+rpi1 g++-4.6_4.6.3-14+rpi1 gcc-4.6_4.6.3-14+rpi1 libc6-dev_2.13-38+rpi2+deb7u8 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 linux-libc-dev_3.2.51-1+rpi1
Package versions: apt_0.9.7.9+rpi1+deb7u7 base-files_7.1wheezy8+rpi1 base-passwd_3.5.26 bash_4.2+dfsg-0.1+deb7u3 binutils_2.22-8+deb7u2 bison_1:2.5.dfsg-2.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.3 build-essential_11.5+b1 bzip2_1.0.6-4 ca-certificates_20130119+deb7u1 ca-certificates-java_20121112+nmu2 coreutils_8.13-3.5 cpio_2.11+dfsg-0.1+deb7u1 cpp_4:4.6.3-8 cpp-4.6_4.6.3-14+rpi1 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20120909 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.15+rpi1 dpkg-dev_1.16.15+rpi1 e2fslibs_1.42.5-1.1+deb7u1 e2fsprogs_1.42.5-1.1+deb7u1 ed_1.6-2 fakeroot_1.18.4-2 file_5.11-2+deb7u9 findutils_4.4.2-4 fontconfig_2.9.0-7.1+deb7u1 fontconfig-config_2.9.0-7.1+deb7u1 fonts-comfortaa_1.5-2 fonts-droid_20111207+git-1 fonts-freefont-otf_20120503-1 fonts-freefont-ttf_20120503-1 fonts-gfs-artemisia_1.1-4 fonts-gfs-complutum_1.1-5 fonts-gfs-didot_1.1-5 fonts-gfs-neohellenic_1.1-4 fonts-gfs-olga_1.1-3 fonts-gfs-solomos_1.1-4 fonts-inconsolata_001.010-4 fonts-junicode_0.7.6-1 fonts-linuxlibertine_5.1.3-1 fonts-oflb-asana-math_000.907-4 fonts-sil-gentium_20081126:1.02-12 fonts-sil-gentium-basic_1.1-5 fonts-stix_1.1.0-1 g++_4:4.6.3-8 g++-4.6_4.6.3-14+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-14+rpi1 gcc-4.6-base_4.6.3-14+rpi1 gcc-4.7-base_4.7.2-5+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-8 gfortran-4.6_4.6.3-14+rpi1 gir1.2-freedesktop_1.32.1-1 gir1.2-glib-2.0_1.32.1-1 gir1.2-pango-1.0_1.30.0-1 gnupg_1.4.12-7+deb7u7 gpgv_1.4.12-7+deb7u7 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initramfs-tools_0.115~bpo70+1 initscripts_2.88dsf-41+deb7u1 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 java-common_0.47+deb7u2 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.9+rpi1+deb7u7 libasound2_1.0.25-4 libasprintf0c2_0.18.1.1-9 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-3 libatk-wrapper-java-jni_0.30.4-3 libatk1.0-0_2.4.0-2 libatk1.0-data_2.4.0-2 libattr1_1:2.4.46-8 libaudit0_1:1.7.18-1.1 libavahi-client3_0.6.31-2 libavahi-common-data_0.6.31-2 libavahi-common3_0.6.31-2 libbison-dev_1:2.5.dfsg-2.1 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38+rpi2+deb7u8 libc-dev-bin_2.13-38+rpi2+deb7u8 libc6_2.13-38+rpi2+deb7u8 libc6-dev_2.13-38+rpi2+deb7u8 libcairo-gobject2_1.12.2-3+deb7u1 libcairo-script-interpreter2_1.12.2-3+deb7u1 libcairo2_1.12.2-3+deb7u1 libcairo2-dev_1.12.2-3+deb7u1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-3 libcomerr2_1.42.5-1.1+deb7u1 libcroco3_0.6.6-2 libcups2_1.5.3-5+deb7u6 libcupsimage2_1.5.3-5+deb7u6 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdbus-1-3_1.6.8-1+deb7u6 libdpkg-perl_1.16.15+rpi1 libelf1_0.152-1+wheezy1 libexpat1_2.1.0-1+deb7u4 libexpat1-dev_2.1.0-1+deb7u4 libffi5_3.0.10-3+b3 libflac8_1.2.1-6+deb7u1 libfontconfig1_2.9.0-7.1+deb7u1 libfontconfig1-dev_2.9.0-7.1+deb7u1 libfontenc1_1:1.1.1-1 libfreetype6_2.4.9-1.1+deb7u4 libfreetype6-dev_2.4.9-1.1+deb7u4 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5+rpi1 libgcrypt11_1.5.0-5+deb7u5 libgdbm3_1.8.3-11 libgdk-pixbuf2.0-0_2.26.1-1+deb7u5 libgdk-pixbuf2.0-common_2.26.1-1+deb7u5 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.2-5+rpi1 libgirepository-1.0-1_1.32.1-1 libglib2.0-0_2.33.12+really2.32.4-5 libglib2.0-bin_2.33.12+really2.32.4-5 libglib2.0-data_2.33.12+really2.32.4-5 libglib2.0-dev_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-8+deb7u3 libgomp1_4.7.2-5+rpi1 libgpg-error0_1.10-3.1 libgraphite3_1:2.3.1-0.2 libgs9_9.05~dfsg-6.3+deb7u4 libgs9-common_9.05~dfsg-6.3+deb7u4 libgssapi-krb5-2_1.10.1+dfsg-5+deb7u7 libgtk2.0-0_2.24.10-2 libgtk2.0-common_2.24.10-2 libice-dev_2:1.0.8-2 libice6_2:1.0.8-2 libidn11_1.25-2+deb7u2 libijs-0.35_0.35-8 libjasper1_1.900.1-13+deb7u5 libjbig-dev_2.0-2+deb7u1 libjbig0_2.0-2+deb7u1 libjbig2dec0_0.11+20120125-1 libjpeg8_8d-1+deb7u1 libjpeg8-dev_8d-1+deb7u1 libjson0_0.10-1.2 libk5crypto3_1.10.1+dfsg-5+deb7u7 libkeyutils1_1.5.5-3+deb7u1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 libkpathsea6_2012.20120628-4 libkrb5-3_1.10.1+dfsg-5+deb7u7 libkrb5support0_1.10.1+dfsg-5+deb7u7 liblapack-dev_3.4.1+dfsg-1+deb70u1 liblapack3_3.4.1+dfsg-1+deb70u1 liblcms1_1.19.dfsg2-1.2+deb7u1 liblcms2-2_2.2+git20110628-2.2+deb7u2 liblocale-gettext-perl_1.05-7 liblzma-dev_5.1.1alpha+20120614-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2+deb7u9 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libncursesw5_5.9-10 libnih-dbus1_1.0.3-4.1 libnih1_1.0.3-4.1 libnspr4_2:4.12-1+deb7u1 libnss3_2:3.26-1+debu7u2 libogg0_1.3.0-4 libopenjpeg2_1.3+dfsg-4.8 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpango1.0-dev_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpcsclite1_1.8.4-1+deb7u2 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-4+deb7u2 libpixman-1-dev_0.26.0-4+deb7u2 libpng12-0_1.2.49-1+deb7u2 libpng12-dev_1.2.49-1+deb7u2 libpoppler19_0.18.4-6+deb7u1 libpopt0_1.16-7 libprocps0_1:3.3.3-3 libptexenc1_2012.20120628-4 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libpulse0_2.0-6.1 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libsndfile1_1.0.25-5 libsqlite3-0_3.7.13-1+deb7u3 libss2_1.42.5-1.1+deb7u1 libssl1.0.0_1.0.1t-1+deb7u2 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 libswitch-perl_2.16-2 libtasn1-3_2.13-2+deb7u3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-2 libthai0_0.1.18-2 libtiff4_3.9.6-11+deb7u3 libtiff4-dev_3.9.6-11+deb7u3 libtiffxx0c2_3.9.6-11+deb7u3 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libwrap0_7.6.q-24 libx11-6_2:1.5.0-1+deb7u4 libx11-data_2:1.5.0-1+deb7u4 libx11-dev_2:1.5.0-1+deb7u4 libx11-xcb1_2:1.5.0-1+deb7u4 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb-render0_1.8.1-2+deb7u1 libxcb-render0-dev_1.8.1-2+deb7u1 libxcb-shm0_1.8.1-2+deb7u1 libxcb-shm0-dev_1.8.1-2+deb7u1 libxcb1_1.8.1-2+deb7u1 libxcb1-dev_1.8.1-2+deb7u1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.13-1+deb7u1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.1-2+deb7u1 libxext6_2:1.3.1-2+deb7u1 libxfixes3_1:5.0-4+deb7u2 libxfont1_1:1.4.5-5 libxft-dev_2.3.1-1 libxft2_2.3.1-1 libxi6_2:1.6.1-1+deb7u3 libxinerama1_2:1.1.2-1+deb7u1 libxkbfile1_1:1.0.8-1 libxml2_2.8.0+dfsg1-7+wheezy7 libxmu6_2:1.1.1-1 libxmuu1_2:1.1.1-1 libxpm4_1:3.5.10-1+deb7u1 libxrandr2_2:1.3.2-2+deb7u2 libxrender-dev_1:0.9.7-1+deb7u3 libxrender1_1:0.9.7-1+deb7u3 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.3-1+deb7u1 libxt6_1:1.1.3-1+deb7u1 libxtst6_2:1.2.1-1+deb7u2 linux-libc-dev_3.2.51-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1+deb7u1 luatex_0.70.1.20120524-3 m4_1.4.16-3 make_3.81-8.2 makedev_2.3.1-92 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-1+deb7u1 mount_2.20.1-5.3 mpack_1.6-8 multiarch-support_2.13-38+rpi2+deb7u8 ncurses-base_5.9-10 ncurses-bin_5.9-10 openjdk-6-jdk_6b38-1.13.10-1~deb7u1+rpi1 openjdk-6-jre_6b38-1.13.10-1~deb7u1+rpi1 openjdk-6-jre-headless_6b38-1.13.10-1~deb7u1+rpi1 openjdk-6-jre-lib_6b38-1.13.10-1~deb7u1+rpi1 openssl_1.0.1t-1+deb7u2 otf-freefont_20120503-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi2+deb7u2 perl-base_5.14.2-21+rpi2+deb7u2 perl-modules_5.14.2-21+rpi2+deb7u2 pkg-config_0.26-1 po-debconf_1.0.16+nmu2 poppler-data_0.4.5-10 preview-latex-style_11.86-11 procps_1:3.3.3-3 python_2.7.3-4+deb7u1 python-minimal_2.7.3-4+deb7u1 python2.7_2.7.3-6+deb7u3 python2.7-minimal_2.7.3-6+deb7u3 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 shared-mime-info_1.0-1 sysv-rc_2.88dsf-41+deb7u1 sysvinit_2.88dsf-41+deb7u1 sysvinit-utils_2.88dsf-41+deb7u1 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tcl8.5-dev_8.5.11-2 tex-common_3.15 texi2html_1.82+dfsg1-1 texinfo_4.13a.dfsg.1-10 texlive-base_2012.20120611-5+deb7u1 texlive-binaries_2012.20120628-4 texlive-common_2012.20120611-5+deb7u1 texlive-doc-base_2012.20120611-1 texlive-extra-utils_2012.20120611-2 texlive-fonts-extra_2012.20120611-2 texlive-fonts-recommended_2012.20120611-5+deb7u1 texlive-generic-recommended_2012.20120611-5+deb7u1 texlive-latex-base_2012.20120611-5+deb7u1 texlive-latex-extra_2012.20120611-2 texlive-latex-recommended_2012.20120611-5+deb7u1 texlive-pictures_2012.20120611-5+deb7u1 tk8.5_8.5.11-2 tk8.5-dev_8.5.11-2 ttf-dejavu-core_2.33-3 ttf-dejavu-extra_2.33-3 ttf-freefont_20120503-1 ttf-marvosym_0.1+dfsg-2 tzdata_2017a-0+deb7u1 tzdata-java_2017a-0+deb7u1 ucf_3.0025+nmu3 udev_175-7.2 util-linux_2.20.1-5.3 x11-common_1:7.7+3~deb7u1 x11-xkb-utils_7.7~1 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.2.1-1 xauth_1:1.0.7-1 xdg-utils_1.1.0~rc1+git20111210-6+deb7u3 xfonts-base_1:1.0.3 xfonts-encodings_1:1.0.4-1 xfonts-utils_1:7.7~1 xkb-data_2.5.1-3 xorg-sgml-doctools_1:1.10-1 xserver-common_2:1.12.4-6+deb7u6 xtrans-dev_1.2.7-1 xvfb_2:1.12.4-6+deb7u6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Mar 17 17:12:10 2017 UTC using RSA key ID AB99A21A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_2.15.1-4+deb7u1.dsc
dpkg-source: info: extracting r-base in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-base_2.15.1.orig.tar.gz
dpkg-source: info: applying r-base_2.15.1-4+deb7u1.diff.gz
dpkg-source: info: upstream files that have been modified: 
 /<<PKGBUILDDIR>>/src/library/grDevices/src/devPS.c
 /<<PKGBUILDDIR>>/src/library/tools/R/install.R
 /<<PKGBUILDDIR>>/src/modules/X11/devX11.c
 /<<PKGBUILDDIR>>/src/modules/X11/rlogo_icon.h

Check disc space
----------------

df: Warning: cannot read table of mounted file systems: No such file or directory
Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=wheezy-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-7550e013-a341-4814-b46a-fcc5b8868e57
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 2.15.1-4+deb7u1
 dpkg-source --before-build r-base-2.15.1
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
		build-stamp build-indep-stamp build-arch-stamp \
		make-stamp make-arch-stamp make-indep-stamp \
		install-indep-stamp install-arch-stamp \
		check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
	R_BROWSER=xdg-open				\
	PAGER=/usr/bin/pager				\
	PERL=/usr/bin/perl				\
	R_UNZIPCMD=/usr/bin/unzip			\
	R_ZIPCMD=/usr/bin/zip				\
	R_PRINTCMD=/usr/bin/lpr				\
	LIBnn=lib					\
	AWK=/usr/bin/awk                                \
	CC="gcc -std=gnu99"					\
	CXX=g++						\
	F77=gfortran					\
	FC=gfortran					\
	CFLAGS="-O3 -pipe  -g"				\
	CXXFLAGS="-O3 -pipe  -g"				\
	FFLAGS="-O3 -pipe  -g"				\
	FCFLAGS="-O3 -pipe  -g"				\
	CPPFLAGS=					\
	LDFLAGS=					\
	FLIBS=						\
	rsharedir=/usr/share/R/share			\
	rincludedir=/usr/share/R/include		\
	rdocdir=/usr/share/R/doc			\
	./configure --prefix=/usr			\
		    --with-cairo			\
		    --with-jpeglib			\
		    --with-readline			\
		    --with-tcltk			\
		    --with-system-bzlib			\
		    --with-system-pcre			\
		    --with-system-zlib			\
		    --mandir=/usr/share/man		\
		    --infodir=/usr/share/info		\
		    --datadir=/usr/share/R/share	\
		    --includedir=/usr/share/R/include	\
		    --with-blas		\
		    --with-lapack		\
		    --enable-R-profiling		\
		    --enable-R-shlib			\
		    --enable-memory-profiling		\
		    --without-recommended-packages	\
		    --build arm-linux-gnueabihf
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for ginstall-info... no
checking for install-info... /usr/sbin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of long double... 8
checking size of size_t... 4
checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking for xmkmf... no
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... no
checking for clock_gettime in -lrt... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for zgeev_... no
checking for zgeev_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.5/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.3... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 4.999... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 7.6... yes
checking whether PCRE support needs to be compiled... no
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking for javah... /usr/bin/javah
checking for jar... /usr/bin/jar
checking whether Java compiler works... yes
checking whether Java compiler works for version 1.4... yes
checking whether Java interpreter works... yes
checking Java environment... /usr/lib/jvm/java-6-openjdk-armhf/jre
checking for cached Java settings... no
checking whether JNI programs can be compiled... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking whether make sets $(MAKE)... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 2.5, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/extra/xz/Makefile
config.status: creating src/extra/zlib/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/modules/vfonts/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tests/Native/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing po-directories commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands

R is now configured for arm-unknown-linux-gnueabihf

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -O3 -pipe  -g
  Fortran 77 compiler:       gfortran  -O3 -pipe  -g

  C++ compiler:              g++  -O3 -pipe  -g
  Fortran 90/95 compiler:    gfortran -O3 -pipe  -g
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling, Java

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-O3 -pipe  -g"			\
			CXXFLAGS="-O3 -pipe  -g"			\
			FFLAGS="-O3 -pipe  -g"			\
			FCFLAGS="-O3 -pipe  -g"			\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			LDFLAGS="-Wl,-O1"			\
			R
make[1]: Entering directory `/<<PKGBUILDDIR>>'
make[2]: Entering directory `/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory `/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory `/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory `/<<PKGBUILDDIR>>/doc/html'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory `/<<PKGBUILDDIR>>/doc/manual'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory `/<<PKGBUILDDIR>>/etc'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory `/<<PKGBUILDDIR>>/share'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/share'
make[2]: Entering directory `/<<PKGBUILDDIR>>/src'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/scripts'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/include'
mkdir -p -- ../../include
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/appl'
making bakslv.d from bakslv.c
making binning.d from binning.c
making cpoly.d from cpoly.c
making cumsum.d from cumsum.c
making fft.d from fft.c
making fmin.d from fmin.c
making integrate.d from integrate.c
making interv.d from interv.c
making lbfgsb.d from lbfgsb.c
making machar.d from machar.c
making maxcol.d from maxcol.c
making pretty.d from pretty.c
making rcont.d from rcont.c
making rowsum.d from rowsum.c
making stem.d from stem.c
making strsignif.d from strsignif.c
making tabulate.d from tabulate.c
making uncmin.d from uncmin.c
making zeroin.d from zeroin.c
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/appl'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bakslv.c -o bakslv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c binning.c -o binning.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cpoly.c -o cpoly.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cumsum.c -o cumsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fft.c -o fft.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmin.c -o fmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lbfgsb.c -o lbfgsb.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c machar.c -o machar.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rowsum.c -o rowsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stem.c -o stem.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c strsignif.c -o strsignif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c tabulate.c -o tabulate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c uncmin.c -o uncmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c zeroin.c -o zeroin.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c ch2inv.f -o ch2inv.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c chol.f -o chol.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dtrsl.f -o dtrsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c eigen.f -o eigen.o
rm -f libappl.a
ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o 
ranlib libappl.a
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/appl'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
config.status: creating src/unix/Makefile
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
making dynload.d from dynload.c
making edit.d from edit.c
making stubs.d from stubs.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
making aqua.d from aqua.c
making Rembedded.d from Rembedded.c
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c edit.c -o edit.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c X11.c -o X11.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c aqua.c -o aqua.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rembedded.c -o Rembedded.o
rm -rf libunix.a
ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o Rembedded.o
ranlib libunix.a
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -DR_HOME='"/<<PKGBUILDDIR>>"' -o Rscript \
	  ./Rscript.c
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/main'
config.status: creating src/main/Makefile
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/main'
making CConverters.d from CConverters.c
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making base.d from base.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cov.d from cov.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making deriv.d from deriv.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making fourier.d from fourier.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making model.d from model.c
making names.d from names.c
making objects.d from objects.c
making optim.d from optim.c
making optimize.d from optimize.c
making options.d from options.c
making par.d from par.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making size.d from size.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c CConverters.c -o CConverters.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c base.c -o base.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cov.c -o cov.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c deriv.c -o deriv.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fourier.c -o fourier.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gramRd.c -o gramRd.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c main.c -o main.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c model.c -o model.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c optim.c -o optim.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c optimize.c -o optimize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c par.c -o par.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c size.c -o size.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-O1  -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o gramLatex.o gramRd.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o   ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a    ../extra/tre/libtre.a    -lblas -lgfortran -lm   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/bin/exec
mkdir -p -- /<<PKGBUILDDIR>>/lib
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -Wl,-O1 -o R.bin Rmain.o  -L../../lib -lR 
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/main'
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make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -Wl,-O1 -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR 
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/modules
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -Wl,-O1 -o lapack.so  Lapack.o  -L../../../lib -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_her_glyph.c -o g_her_glyph.o
gcc -std=gnu99 -shared -Wl,-O1 -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm 
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/X11'
making dataentry.d from dataentry.c
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -Wl,-O1 -o R_X11.so dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11   -lX11 -lXt  -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm 
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/library'
mkdir -p -- ../../library
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/profile'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/base'
building package 'base'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/base'
mkdir -p -- ../../../library/base/demo
mkdir -p -- ../../../library/base/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools'
mkdir -p -- ../../../library/tools/R
mkdir -p -- ../../../library/tools/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c signals.c -o signals.o
gcc -std=gnu99 -shared -Wl,-O1 -o tools.so text.o init.o Rmd5.o md5.o signals.o -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
mkdir -p -- ../../../library/compiler/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/compiler'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/compiler'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/base'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tools'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/po
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/utils'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/utils'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/po
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devCairo.d from devCairo.c
making devNull.d from devNull.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
making init.d from init.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devNull.c -o devNull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -shared -Wl,-O1 -o grDevices.so axis_scales.o chull.o devCairo.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o -lz -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: `Makedeps' is up to date.
make[9]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[10]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -Wl,-O1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo   -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[9]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[8]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src/cairo'
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grDevices'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
mkdir -p -- ../../../library/graphics/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/graphics'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/graphics'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats'
mkdir -p -- ../../../library/stats/R
mkdir -p -- ../../../library/stats/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making Trunmed.d from Trunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ks.c -o ks.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c line.c -o line.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c prho.c -o prho.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c Trunmed.c -o Trunmed.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c distance.c -o distance.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c nls.c -o nls.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c arima.c -o arima.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c burg.c -o burg.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c filter.c -o filter.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c starma.c -o starma.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c port.c -o port.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c family.c -o family.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c approx.c -o approx.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c splines.c -o splines.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c lm.c -o lm.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c stl.f -o stl.o
gfortran -fpic  -O3 -pipe  -g -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -Wl,-O1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/datasets'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'AirPassengers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'AirPassengers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'BJsales' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'BJsales' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'BOD' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'BOD' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'CO2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'CO2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ChickWeight' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ChickWeight' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'DNase' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'DNase' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'EuStockMarkets' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'EuStockMarkets' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Formaldehyde' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Formaldehyde' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'HairEyeColor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'HairEyeColor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Harman23.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Harman23.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Harman74.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Harman74.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Indometh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Indometh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'InsectSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'InsectSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'JohnsonJohnson' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'JohnsonJohnson' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'LakeHuron' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'LakeHuron' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'LifeCycleSavings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'LifeCycleSavings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Loblolly' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Loblolly' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Nile' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Nile' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Orange' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Orange' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'OrchardSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'OrchardSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'PlantGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'PlantGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Puromycin' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Puromycin' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Seatbelts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Seatbelts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Theoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Theoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Titanic' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Titanic' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ToothGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ToothGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UCBAdmissions' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UCBAdmissions' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKDriverDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKDriverDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKLungDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKLungDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKgas' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKgas' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USAccDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USAccDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USArrests' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USArrests' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USJudgeRatings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USJudgeRatings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USPersonalExpenditure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USPersonalExpenditure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'VADeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'VADeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'WWWusage' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'WWWusage' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'WorldPhones' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'WorldPhones' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ability.cov' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ability.cov' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'airmiles' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'airmiles' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'airquality' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'airquality' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'anscombe' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'anscombe' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'attenu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'attenu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'attitude' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'attitude' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'austres' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'austres' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'beavers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'beavers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'cars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'cars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'chickwts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'chickwts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'co2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'co2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'crimtab' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'crimtab' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'discoveries' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'discoveries' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'esoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'esoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'euro' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'euro' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'eurodist' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'eurodist' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'faithful' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'faithful' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'freeny' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'freeny' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'infert' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'infert' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'iris' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'iris' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'iris3' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'iris3' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'islands' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'islands' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'lh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'lh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'longley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'longley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'lynx' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'lynx' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'morley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'morley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'mtcars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'mtcars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'nhtemp' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'nhtemp' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'nottem' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'nottem' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'occupationalStatus' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'occupationalStatus' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'precip' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'precip' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'presidents' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'presidents' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'pressure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'pressure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'quakes' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'quakes' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'randu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'randu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'rivers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'rivers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'rock' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'rock' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sleep' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'sleep' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'stackloss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'stackloss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'state' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'state' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspot.month' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'sunspot.month' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspot.year' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'sunspot.year' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspots' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'sunspots' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'swiss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'swiss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'treering' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'treering' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'trees' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'trees' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'uspop' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'uspop' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'volcano' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'volcano' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'warpbreaks' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'warpbreaks' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'women' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'women' not found
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/datasets'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods'
mkdir -p -- ../../../library/methods/R
mkdir -p -- ../../../library/methods/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c tests.c -o tests.o
gcc -std=gnu99 -shared -Wl,-O1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ...
done
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/methods'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid'
mkdir -p -- ../../../library/grid/R
mkdir -p -- ../../../library/grid/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -Wl,-O1 -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/grid'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines'
mkdir -p -- ../../../library/splines/R
mkdir -p -- ../../../library/splines/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -O3 -pipe  -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -Wl,-O1 -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/splines'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
mkdir -p -- ../../../library/stats4/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats4'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/stats4'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
mkdir -p -- ../../../library/tcltk/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -Wl,-O1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.5 -L/usr/lib -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: `Makedeps' is up to date.
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk/src'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/tcltk'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
mkdir -p -- ../../../library/parallel/po
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel'
make[6]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -O3 -pipe  -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -Wl,-O1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
make[7]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
make[6]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel/src'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel'
make[5]: Entering directory `/<<PKGBUILDDIR>>/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/parallel'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library/base'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src'
make[2]: Entering directory `/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory `/<<PKGBUILDDIR>>/po'
make[3]: Entering directory `/<<PKGBUILDDIR>>/po'
installing translations:
mkdir -p -- ../share/locale/da/LC_MESSAGES
  da
mkdir -p -- ../share/locale/en/LC_MESSAGES
  en
mkdir -p -- ../share/locale/en_GB/LC_MESSAGES
  en_GB
mkdir -p -- ../share/locale/es/LC_MESSAGES
  es
mkdir -p -- ../share/locale/fr/LC_MESSAGES
  fr
mkdir -p -- ../share/locale/de/LC_MESSAGES
  de
mkdir -p -- ../share/locale/it/LC_MESSAGES
  it
mkdir -p -- ../share/locale/ja/LC_MESSAGES
  ja
mkdir -p -- ../share/locale/ko/LC_MESSAGES
  ko
mkdir -p -- ../share/locale/nn/LC_MESSAGES
  nn
mkdir -p -- ../share/locale/pl/LC_MESSAGES
  pl
mkdir -p -- ../share/locale/pt_BR/LC_MESSAGES
  pt_BR
mkdir -p -- ../share/locale/ru/LC_MESSAGES
  ru
mkdir -p -- ../share/locale/tr/LC_MESSAGES
  tr
mkdir -p -- ../share/locale/zh_CN/LC_MESSAGES
  zh_CN
mkdir -p -- ../share/locale/zh_TW/LC_MESSAGES
  zh_TW
mkdir -p -- ../share/locale/en@quot/LC_MESSAGES
  en@quot
make[3]: Leaving directory `/<<PKGBUILDDIR>>/po'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/po'
you should 'make docs' now ...
make[1]: Leaving directory `/<<PKGBUILDDIR>>'
(cd src/nmath/standalone;				\
		/usr/bin/make	CFLAGS="-O3 -pipe  -g -D_REENTRANT"		\
			CXXFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			FFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
			shared static )
make[1]: Entering directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory `/<<PKGBUILDDIR>>/src/include'
make[2]: `Rmath.h' is up to date.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src/include'
Copying source files
make[2]: Entering directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp  -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
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gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g  -DR_HOME='"/<<PKGBUILDDIR>>"' -o Rscript \
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building system startup profile
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building package 'tools'
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building package 'datasets'
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Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'AirPassengers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'AirPassengers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'BJsales' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'BJsales' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'BOD' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'BOD' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'CO2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'CO2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ChickWeight' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ChickWeight' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'DNase' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'DNase' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'EuStockMarkets' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'EuStockMarkets' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Formaldehyde' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Formaldehyde' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'HairEyeColor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'HairEyeColor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Harman23.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Harman23.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Harman74.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Harman74.cor' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Indometh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Indometh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'InsectSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'InsectSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'JohnsonJohnson' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'JohnsonJohnson' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'LakeHuron' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'LakeHuron' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'LifeCycleSavings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'LifeCycleSavings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Loblolly' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Loblolly' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Nile' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Nile' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Orange' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Orange' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'OrchardSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'OrchardSprays' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'PlantGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'PlantGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Puromycin' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Puromycin' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Seatbelts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Seatbelts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Theoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Theoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'Titanic' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'Titanic' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ToothGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ToothGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UCBAdmissions' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UCBAdmissions' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKDriverDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKDriverDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKLungDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKLungDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKgas' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'UKgas' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USAccDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USAccDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USArrests' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USArrests' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USJudgeRatings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USJudgeRatings' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USPersonalExpenditure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'USPersonalExpenditure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'VADeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'VADeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'WWWusage' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'WWWusage' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'WorldPhones' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'WorldPhones' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ability.cov' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'ability.cov' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'airmiles' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'airmiles' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'airquality' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'airquality' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'anscombe' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'anscombe' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'attenu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'attenu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'attitude' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'attitude' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'austres' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'austres' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'beavers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'beavers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'cars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'cars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'chickwts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'chickwts' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'co2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'co2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'crimtab' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'crimtab' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'discoveries' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'discoveries' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'esoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'esoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'euro' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'euro' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'eurodist' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'eurodist' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'faithful' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'faithful' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'freeny' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'freeny' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'infert' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'infert' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'iris' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'iris' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'iris3' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'iris3' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'islands' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'islands' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'lh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'lh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'longley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'longley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'lynx' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'lynx' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'morley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'morley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'mtcars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = tmpEnv) :
  data set 'mtcars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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installing translations:
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you should 'make docs' now ...
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building/updating package metadata ...
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'AirPassengers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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  data set 'Orange' not found
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  data set 'OrchardSprays' not found
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  data set 'Puromycin' not found
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Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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  data set 'Titanic' not found
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  data set 'ToothGrowth' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UCBAdmissions' not found
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  data set 'UKDriverDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKLungDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'UKgas' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USAccDeaths' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'USArrests' not found
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  data set 'USJudgeRatings' not found
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  data set 'USPersonalExpenditure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'VADeaths' not found
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  data set 'WWWusage' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'WorldPhones' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'ability.cov' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'airmiles' not found
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  data set 'airquality' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'anscombe' not found
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  data set 'attenu' not found
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  data set 'attitude' not found
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  data set 'austres' not found
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  data set 'beavers' not found
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  data set 'cars' not found
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  data set 'chickwts' not found
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  data set 'co2' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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  data set 'discoveries' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'esoph' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'euro' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
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  data set 'faithful' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'freeny' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'infert' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'iris' not found
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  data set 'iris3' not found
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  data set 'islands' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'lh' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'longley' not found
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  data set 'lynx' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'morley' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'mtcars' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'nhtemp' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'nottem' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'occupationalStatus' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'precip' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'presidents' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'pressure' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'quakes' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'randu' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'rivers' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'rock' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sleep' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'stackloss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'state' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspot.month' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspot.year' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'sunspots' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'swiss' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'treering' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'trees' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'uspop' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'volcano' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'warpbreaks' not found
Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) :
  data set 'women' not found
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/library'
writing package indices
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/library'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[1]: Leaving directory `/<<PKGBUILDDIR>>'
touch make-arch-stamp
*** check ***
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/<<PKGBUILDDIR>>/debian/r-base-core
/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install
make[1]: Entering directory `/<<PKGBUILDDIR>>'
make[2]: Entering directory `/<<PKGBUILDDIR>>/m4'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/m4'
make[2]: Entering directory `/<<PKGBUILDDIR>>/tools'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/tools'
make[2]: Entering directory `/<<PKGBUILDDIR>>/doc'
installing doc ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory `/<<PKGBUILDDIR>>/doc/html'
installing doc/html ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory `/<<PKGBUILDDIR>>/doc/html'
make[3]: Entering directory `/<<PKGBUILDDIR>>/doc/manual'
installing doc/manual ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/manual
make[3]: Leaving directory `/<<PKGBUILDDIR>>/doc/manual'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/doc'
make[2]: Entering directory `/<<PKGBUILDDIR>>/etc'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory `/<<PKGBUILDDIR>>/etc'
make[2]: Entering directory `/<<PKGBUILDDIR>>/share'
installing share ...
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory `/<<PKGBUILDDIR>>/share'
make[2]: Entering directory `/<<PKGBUILDDIR>>/src'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/scripts'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/scripts'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/include'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/include/R_ext'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/include/R_ext'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/include'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/extra'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/blas'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/bzip2'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/bzip2'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/pcre'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/pcre'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/tre'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/xdr'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/xz'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/xz'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/zlib'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/zlib'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/extra/intl'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/extra/intl'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/extra'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/appl'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/appl'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/nmath'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g  -DR_HOME='"/usr/lib/R"' -o Rscript \
	  ./Rscript.c
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/main'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/main'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/modules'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/internet'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/internet'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/lapack'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/vfonts'
make[4]: Entering directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[4]: Leaving directory `/<<PKGBUILDDIR>>/src/modules/X11'
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/modules'
make[3]: Entering directory `/<<PKGBUILDDIR>>/src/library'
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory `/<<PKGBUILDDIR>>/src/library'
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src'
make[2]: Entering directory `/<<PKGBUILDDIR>>/tests'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/tests'
make[2]: Entering directory `/<<PKGBUILDDIR>>/po'
installing translations:
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/da/LC_MESSAGES
  da
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/en/LC_MESSAGES
  en
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/en_GB/LC_MESSAGES
  en_GB
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/es/LC_MESSAGES
  es
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/fr/LC_MESSAGES
  fr
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/de/LC_MESSAGES
  de
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/it/LC_MESSAGES
  it
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/ja/LC_MESSAGES
  ja
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/ko/LC_MESSAGES
  ko
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/nn/LC_MESSAGES
  nn
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/pl/LC_MESSAGES
  pl
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/pt_BR/LC_MESSAGES
  pt_BR
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/ru/LC_MESSAGES
  ru
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/tr/LC_MESSAGES
  tr
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/zh_CN/LC_MESSAGES
  zh_CN
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/zh_TW/LC_MESSAGES
  zh_TW
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/locale/en@quot/LC_MESSAGES
  en@quot
make[2]: Leaving directory `/<<PKGBUILDDIR>>/po'
make[1]: Leaving directory `/<<PKGBUILDDIR>>'
(cd src/unix; 						\
		rm -vf Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript;	\
		/usr/bin/make	CFLAGS="-O3 -pipe  -g -D_REENTRANT"		\
			CXXFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			FFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			RHOME=/usr/lib/R			\
			DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core			\
			install-Rscript )
removed `Rscript'
removed `/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory `/<<PKGBUILDDIR>>/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -DR_HOME='"/usr/lib/R"' -o Rscript \
	  ./Rscript.c
make[1]: Leaving directory `/<<PKGBUILDDIR>>/src/unix'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
`src/unix/Rscript' -> `/<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/
#strings /<<PKGBUILDDIR>>/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
		/usr/bin/make DESTDIR=/<<PKGBUILDDIR>>/debian/r-base-core install )
make[1]: Entering directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
make[2]: Entering directory `/<<PKGBUILDDIR>>/src/include'
make[2]: `Rmath.h' is up to date.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/src/include'
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory `/<<PKGBUILDDIR>>/src/nmath/standalone'
chmod a+x	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING  		
removed `/<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/; \
		ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING  	
removed `/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc; \
		ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/texmf/tex/latex && 	\
	    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr			\
			rdocdir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/R/doc	\
			install-pdf
make[1]: Entering directory `/<<PKGBUILDDIR>>'
make[2]: Entering directory `/<<PKGBUILDDIR>>/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX .........................................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX .....
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX ............
PDF/LaTeX documentation: reference index ...
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
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entering extended mode
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Chapter 1.
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Underfull \hbox (badness 10000) in paragraph at lines 77--85
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/fi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/fi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/fi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 77--85
\T1/fi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/fi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
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Underfull \hbox (badness 1178) in paragraph at lines 224--228
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/fi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
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Underfull \hbox (badness 2556) in paragraph at lines 431--437
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/n/10 insertions\T1/ptm/m/n/10 ',
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Underfull \hbox (badness 2671) in paragraph at lines 982--985
[]\T1/ptm/m/n/10 If the calls to \T1/fi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/fi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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Underfull \hbox (badness 10000) in paragraph at lines 1183--1189
[]\T1/fi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/fi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/fi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that

Underfull \hbox (badness 3323) in paragraph at lines 1183--1189
\T1/fi4/m/n/10 x == (x %% y) + y * (   x %/% y ) \T1/ptm/m/n/10 (up to round-in
g er-ror) un-less \T1/fi4/m/n/10 y == 0 \T1/ptm/m/n/10 where the
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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Underfull \hbox (badness 10000) in paragraph at lines 2584--2587

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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 Are the \T1/fi4/m/n/10 R.app \T1/ptm/m/n/10 GUI com-po-nents a
nd the [][]\T1/fi4/m/n/10 quartz[][][] \T1/ptm/m/n/10 func-tion op-er-a-tional?


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\T1/ptm/m/n/10 Only on some Mac OS X builds. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/fi4/m/n/10 svg[][][]\T1/ptm/m/n/
10 , [][]\T1/fi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/fi4/m/n/10 c
airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
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\T1/fi4/m/n/10 deparse.level = 0 \T1/ptm/m/n/10 con-structs no la-bels; the de-
fault,

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\T1/fi4/m/n/10 deparse.level = 1 or 2 \T1/ptm/m/n/10 con-structs la-bels from t
he ar-gu-ment names,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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Underfull \hbox (badness 10000) in paragraph at lines 5797--5800
[]\T1/ptm/m/n/10 A note on `\T1/fi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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Underfull \hbox (badness 2790) in paragraph at lines 6005--6012
[]\T1/fi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/fi4/m/n/10 descriptio
n = "clipboard" \T1/ptm/m/n/10 in mode \T1/fi4/m/n/10 "r" \T1/ptm/m/n/10 only. 
This reads

Underfull \hbox (badness 3471) in paragraph at lines 6005--6012
\T1/ptm/m/n/10 the X11 pri-mary se-lec-tion (see [][]$\T1/fi4/m/n/10 http : / /
 standards . freedesktop . org / clipboards-[]spec /
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Underfull \hbox (badness 4595) in paragraph at lines 6719--6722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
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Underfull \hbox (badness 2351) in paragraph at lines 6769--6772
[][][]\T1/fi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/fi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/fi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 7002--7013
[]\T1/fi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
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Underfull \hbox (badness 4479) in paragraph at lines 7073--7082
[][][]\T1/fi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7073--7082
[][]\T1/fi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/fi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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Underfull \hbox (badness 10000) in paragraph at lines 7482--7494
\T1/fi4/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") \T1/ptm/m/n
/10 may give \T1/fi4/m/n/10 NA\T1/ptm/m/n/10 , and hence

Underfull \hbox (badness 6220) in paragraph at lines 7482--7494
\T1/fi4/m/n/10 as.POSIXct("1969-12-31 23:59:59",  tz = "UTC") \T1/ptm/m/n/10 wi
ll give \T1/fi4/m/n/10 "1969-12-31 23:59:00"\T1/ptm/m/n/10 .
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Underfull \hbox (badness 1394) in paragraph at lines 8594--8599
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/fi4/m/n/10 difftime \T1/ptm/m/n/10 with
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Underfull \hbox (badness 10000) in paragraph at lines 9006--9010
[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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Underfull \hbox (badness 2150) in paragraph at lines 9389--9392
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9402--9410
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10467--10471
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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Underfull \hbox (badness 2698) in paragraph at lines 11007--11016
[]\T1/ptm/m/n/10 Both \T1/fi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/fi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11007--11016
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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Underfull \hbox (badness 2253) in paragraph at lines 11938--11940
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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Underfull \hbox (badness 1565) in paragraph at lines 11999--12003
[][][]\T1/fi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/fi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[187]
Underfull \hbox (badness 10000) in paragraph at lines 12042--12044
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[188]
Underfull \hbox (badness 1292) in paragraph at lines 12105--12113
\T1/ptm/m/n/10 ing spe-cial pager names be-ing in-ter-cepted by lower-level cod
e (such as \T1/fi4/m/n/10 "internal" \T1/ptm/m/n/10 and
[189]
Underfull \hbox (badness 1466) in paragraph at lines 12173--12176
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 12272--12276
[][][]\T1/fi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/fi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
fi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12283--12286
[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
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Underfull \hbox (badness 3108) in paragraph at lines 12500--12507
[]\T1/ptm/m/n/10 Find the in-dices of \T1/fi4/m/n/10 x \T1/ptm/m/n/10 in \T1/fi
4/m/n/10 vec\T1/ptm/m/n/10 , where \T1/fi4/m/n/10 vec \T1/ptm/m/n/10 must be so
rted (non-decreasingly); i.e., if

Underfull \hbox (badness 3965) in paragraph at lines 12537--12541
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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Underfull \hbox (badness 4429) in paragraph at lines 13229--13232
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 If you set \T1/fi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/fi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13321--13325
[]\T1/fi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
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Underfull \hbox (badness 1092) in paragraph at lines 14074--14079
[][]\T1/fi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
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Underfull \hbox (badness 6741) in paragraph at lines 14320--14324
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
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Underfull \hbox (badness 1867) in paragraph at lines 14627--14634
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/fi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
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Underfull \hbox (badness 1478) in paragraph at lines 15467--15470
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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Overfull \hbox (17.37834pt too wide) in paragraph at lines 15902--15905
[]\T1/ptm/m/n/10 Sometimes it is bet-ter to use a con-struc-tion such as \T1/fi
4/m/n/10 (tmp <- yes; tmp[!test] <- no[!test]; tmp)\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1442) in paragraph at lines 16138--16140
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
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Underfull \hbox (badness 2452) in paragraph at lines 16230--16246
[][][]\T1/fi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/fi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4739) in paragraph at lines 16873--16875
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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Underfull \hbox (badness 1642) in paragraph at lines 17254--17259
[]\T1/fi4/m/n/10 sapply \T1/ptm/m/n/10 is a user-friendly ver-sion and wrap-per
 of \T1/fi4/m/n/10 lapply \T1/ptm/m/n/10 by de-fault re-turn-ing a vec-tor,
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Underfull \hbox (badness 10000) in paragraph at lines 17728--17732
[]\T1/ptm/m/n/10 By de-fault \T1/fi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/fi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

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\T1/ptm/m/n/10 `\T1/fi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/fi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/m/n/10 /library\T1/ptm/m/n/10
 '
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[]\T1/ptm/m/n/10 Normally \T1/fi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/fi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/fi4/m/n/10 FALSE \T1/ptm/m/n/10 if
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Underfull \hbox (badness 1264) in paragraph at lines 18584--18589
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 4954) in paragraph at lines 18996--19002
[]\T1/fi4/m/n/10 as.logical \T1/ptm/m/n/10 at-tempts to co-erce its ar-gu-ment 
to be of log-i-cal type. For [][]\T1/fi4/m/n/10 factor[][][]\T1/ptm/m/n/10 s,

Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 this uses the [][]\T1/fi4/m/n/10 levels[][][] \T1/ptm/m/n/10 (la
-bels). Like [][]\T1/fi4/m/n/10 as.vector[][][] \T1/ptm/m/n/10 it strips at-tri
butes in-clud-ing

Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 names. Char-ac-ter strings \T1/fi4/m/n/10 c("T", "TRUE", "True",
 "true") \T1/ptm/m/n/10 are re-garded as true,
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[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
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Underfull \hbox (badness 1655) in paragraph at lines 20219--20225
[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
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Underfull \hbox (badness 1484) in paragraph at lines 20368--20376
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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Underfull \hbox (badness 2790) in paragraph at lines 20622--20625
[]\T1/fi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 20622--20625
\T1/fi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[322] [323] [324] [325] [326] [327] [328]
Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340]
[341] [342] [343] [344]
Underfull \hbox (badness 1199) in paragraph at lines 22082--22088
[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/fi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/fi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22082--22088
\T1/ptm/m/n/10 ([][]type[][][] \T1/fi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/fi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/fi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[345] [346] [347] [348] [349] [350] [351]
Underfull \hbox (badness 1038) in paragraph at lines 22610--22619
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 10000) in paragraph at lines 22610--22619
\T1/fi4/m/n/10 c("datasets", "utils", "grDevices", "graphics", "stats",        
"methods")\T1/ptm/m/n/10 .
[352]
Underfull \hbox (badness 6220) in paragraph at lines 22634--22636
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


Underfull \hbox (badness 10000) in paragraph at lines 22696--22705
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2600) in paragraph at lines 22696--22705
\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/m/n/10 /bin/pager\T1/pt
m/m/n/10 ', which se-lects a pager via the \T1/fi4/m/n/10 PAGER \T1/ptm/m/n/10 
en-vi-ron-ment vari-able

Underfull \hbox (badness 2142) in paragraph at lines 22706--22712
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
[353]
Underfull \hbox (badness 1968) in paragraph at lines 22719--22724
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 22729--22738
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[354] [355] [356]
Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 ror `\T1/fi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 22982--22985
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 23003--23005
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23031--23034
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 2680) in paragraph at lines 23041--23047
\T1/ptm/m/n/10 and \T1/fi4/m/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dows
 uses \T1/fi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/m/n/10 "mac.binary" 
\T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/fi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23049--23056
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[357] [358] [359] [360] [361]
Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/fi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/fi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/fi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-

Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
\T1/ptm/m/n/10 sion \T1/fi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-
ment \T1/fi4/m/n/10 A[c(arrayindex.x, arrayindex.y)]
[362] [363] [364] [365]
Underfull \hbox (badness 1748) in paragraph at lines 23608--23612
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 2726) in paragraph at lines 24096--24099
[]\T1/ptm/m/n/10 character string (or \T1/fi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/fi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385]
[386]
Underfull \hbox (badness 1052) in paragraph at lines 24872--24877
[]\T1/fi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1097) in paragraph at lines 25248--25256
[]\T1/ptm/m/n/10 The seed, \T1/fi4/m/n/10 .Random.seed[-1] == r[1:3] \T1/ptm/m/
n/10 is an in-te-ger vec-tor of length
[393] [394] [395] [396]
Underfull \hbox (badness 1533) in paragraph at lines 25562--25565
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407] [408]
[409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420]
[421] [422] [423]
Underfull \hbox (badness 6188) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435]
[436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 10000) in paragraph at lines 28396--28400
[]\T1/fi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[442] [443] [444]
Underfull \hbox (badness 2302) in paragraph at lines 28602--28609
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/m/n/10 center=TRUE\T1/ptm/m/n/10 , 
this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[445] [446]
Underfull \hbox (badness 2261) in paragraph at lines 28755--28760
[]\T1/ptm/m/n/10 If \T1/fi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[447]
Underfull \hbox (badness 10000) in paragraph at lines 28782--28788
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 4001) in paragraph at lines 28782--28788
\T1/ptm/m/n/10 `\T1/fi4/m/n/10 \a, \b, \f, \n, \r, \t, \v\T1/ptm/m/n/10 ' and o
c-tal and hex-adec-i-mal rep-re-sen-ta-
[448]
Underfull \hbox (badness 10000) in paragraph at lines 28855--28860
[]\T1/ptm/m/n/10 Note that since \T1/fi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by

Underfull \hbox (badness 1946) in paragraph at lines 28855--28860
\T1/fi4/m/n/10 scan("foo", sep="\n", blank.lines.skip=FALSE) \T1/ptm/m/n/10 wil
l give an empty fi-nal line if the
[449] [450] [451] [452] [453]
Underfull \hbox (badness 6188) in paragraph at lines 29189--29192
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence \T1/fi4/m/
n/10 1, 2, ...,    length(along.with)\T1/ptm/m/n/10 .
[454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465]
[466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477]
[478]
Underfull \vbox (badness 3803) has occurred while \output is active [479]
[480] [481] [482] [483] [484]
Underfull \vbox (badness 3803) has occurred while \output is active [485]
[486] [487] [488]
Underfull \hbox (badness 5008) in paragraph at lines 31395--31407
[]\T1/ptm/m/n/10 The \T1/fi4/m/n/10 srcref \T1/ptm/m/n/10 func-tion pro-duces a
n ob-ject of class \T1/fi4/m/n/10 srcref\T1/ptm/m/n/10 , which de-scribes a ran
ge

Underfull \hbox (badness 6141) in paragraph at lines 31395--31407
\T1/ptm/m/n/10 of char-ac-ters in a    \T1/fi4/m/n/10 srcfile\T1/ptm/m/n/10 . T
he \T1/fi4/m/n/10 lloc \T1/ptm/m/n/10 value gives the fol-low-ing val-ues: \T1/
fi4/m/n/10 c

Overfull \hbox (112.28088pt too wide) in paragraph at lines 31395--31407
\T1/fi4/m/n/10 (first_line, first_byte, last_line, last_byte, first_column,  la
st_column, first_parsed, last_parsed)\T1/ptm/m/n/10 .
[489] [490]
Underfull \hbox (badness 1072) in paragraph at lines 31552--31556
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31557--31561
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/fi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 31585--31591
\T1/ptm/m/n/10 and `\T1/fi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[491] [492] [493] [494]
Overfull \hbox (5.98903pt too wide) in paragraph at lines 31806--31809
[]\T1/fi4/m/n/10 stopifnot(A, B) \T1/ptm/m/n/10 is con-cep-tu-ally equiv-a-lent
 to \T1/fi4/m/n/10 { if(any(is.na(A)) || !all(A)) stop(...) ;
[495]
Underfull \hbox (badness 10000) in paragraph at lines 31870--31876
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is
[496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507]
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
Underfull \hbox (badness 4416) in paragraph at lines 33414--33416
[]\T1/ptm/m/n/10 Argument \T1/fi4/m/n/10 names \T1/ptm/m/n/10 was in-tro-duced 
in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of
[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
Underfull \hbox (badness 1472) in paragraph at lines 34102--34105
[]\T1/ptm/m/n/10 logical. If \T1/fi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[532] [533] [534] [535] [536] [537] [538] [539]
Underfull \hbox (badness 4217) in paragraph at lines 34611--34614
[]\T1/ptm/m/n/10 Because of the way it is im-ple-mented, on a Unix-alike \T1/fi
4/m/n/10 stderr =     TRUE \T1/ptm/m/n/10 im-plies
[540] [541]
Underfull \hbox (badness 2671) in paragraph at lines 34746--34749
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/fi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/fi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 35139--35142
[][][]\T1/fi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[548] [549]
Underfull \hbox (badness 10000) in paragraph at lines 35260--35264
[][][]\T1/fi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/m/n/10 http : / / developer .
[550]
Underfull \hbox (badness 10000) in paragraph at lines 35322--35326
[][][]\T1/fi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/m/n/10 http : / / developer .
[551] [552] [553] [554] [555] [556] [557] [558] [559] [560]
Underfull \hbox (badness 10000) in paragraph at lines 35939--35941
[]\T1/ptm/m/n/10 Using [][]\T1/fi4/m/n/10 setBreakpoint[][][] \T1/ptm/m/n/10 (f
rom pack-age \T1/ptm/b/n/10 utils\T1/ptm/m/n/10 ) may be an al-ter-na-tive, cal
l-ing
[561] [562] [563] [564] [565] [566] [567]
Underfull \hbox (badness 1990) in paragraph at lines 36440--36448
[]\T1/fi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36440--36448
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[568] [569] [570] [571] [572]
Underfull \hbox (badness 1515) in paragraph at lines 36706--36711
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[573] [574] [575]
Underfull \hbox (badness 1917) in paragraph at lines 36929--36936
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/fi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[576] [577] [578] [579] [580] [581] [582] [583] [584]
Underfull \hbox (badness 3668) in paragraph at lines 37494--37496
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[585]
Underfull \hbox (badness 2401) in paragraph at lines 37594--37598
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[586] [587] [588]
Underfull \hbox (badness 10000) in paragraph at lines 37770--37775
[]\T1/ptm/m/n/10 If \T1/fi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/fi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/fi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/fi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is

Underfull \hbox (badness 1454) in paragraph at lines 37770--37775
\T1/fi4/m/n/10 arrayInd(which(x), dim(x), dimnames(x))\T1/ptm/m/n/10 , namely a
 ma-trix whose rows each are the
[589] [590] [591] [592] [593] [594] [595] [596] [597]
Underfull \hbox (badness 5417) in paragraph at lines 38279--38283
[]\T1/fi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[598]
Underfull \hbox (badness 10000) in paragraph at lines 38332--38336
[]\T1/fi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[599]) (./datasets-pkg.tex [600]
Chapter 2.
[601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 691--693
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[613] [614]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 823--825
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[615] [616] [617] [618] [619]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 1128--1130
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[620] [621] [622] [623] [624] [625] [626] [627] [628]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[629] [630] [631] [632] [633] [634] [635] [636]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[637] [638] [639] [640] [641] [642] [643] [644]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[645]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData",    "groupedData", "data.frame")
[662] [663] [664] [665]
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[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/m/n/10 http : / / www . sonic . net /
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[673] [674] [675] [676] [677] [678] [679]) (./grDevices-pkg.tex [680]
Chapter 3.
[681] [682] [683] [684]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/fi4/m/n/10 c(mi, ma, n.)\T1/p
tm/m/n/10 , with iden-ti-cal mean-ing to
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/fi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
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\T1/ptm/m/n/10 by [][]\T1/fi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/fi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/fi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[704]
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[]\T1/fi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[705]
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[]\T1/ptm/m/n/10 logical; if \T1/fi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/fi4/m/n/10 TRUE \T1/ptm/m/n/10 when

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[][]\T1/fi4/m/n/10 .Device[][][] == "null device" \T1/ptm/m/n/10 and [][]\T1/fi
4/m/n/10 getOption[][][]("device") \T1/ptm/m/n/10 is among the
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\T1/fi4/m/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pgnmraw"\T1/ptm/m/n/10 , 
\T1/fi4/m/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pnmraw"\T1/ptm/m/n/10 , \T
1/fi4/m/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "ppmraw"\T1/ptm/m/n/10 , \T1/
fi4/m/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pkmraw"\T1/ptm/m/n/10 , \T1/fi
4/m/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

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\T1/fi4/m/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tiffg32d"\T1/ptm/m/n/10
 , \T1/fi4/m/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tifflzw"\T1/ptm/m/n/
10 , \T1/fi4/m/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tiff12nc"\T1/ptm
/m/n/10 , \T1/fi4/m/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

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\T1/fi4/m/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "psgray"\T1/p
tm/m/n/10 , \T1/fi4/m/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "bit"\T1/ptm/
m/n/10 , \T1/fi4/m/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "bitcmyk"\T1/pt
m/m/n/10 , \T1/fi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,

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\T1/fi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pngalpha"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "png256"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "png48"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "jpeggray"\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 Navigation keys, passed as one of \T1/fi4/m/n/10 "Left", "Up",
 "Right", "Down",     "PgUp", "PgDn", "End", "Home" 
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/fi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
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[]\T1/ptm/m/n/10 For use with \T1/fi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/fi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/fi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to

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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[751]
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/fi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/fi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
fi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
[752]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[753]
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/fi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[754]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/fi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/fi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[757]
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\T1/ptm/m/n/10 can be found at [][]$\T1/fi4/m/n/10 ftp : / / ftp . gnu . org / 
pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 arguments \T1/fi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/fi4/m/n/10 title\T1/ptm/m/n/10 , \T1/fi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/fi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/fi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/m/n/10 width\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/fi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/fi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[784] [785] [786]) (./graphics-pkg.tex
Chapter 4.
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[]\T1/ptm/m/n/10 For each \T1/fi4/m/n/10 i\T1/ptm/m/n/10 , an ar-row is drawn b
e-tween the point \T1/fi4/m/n/10 (x0[i],    y0[i]) \T1/ptm/m/n/10 and the point

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[]\T1/ptm/m/n/10 When \T1/fi4/m/n/10 at = NULL\T1/ptm/m/n/10 , pretty tick mark
 lo-ca-tions are com-puted in-ter-nally (the same way
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[]\T1/fi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/fi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[]\T1/ptm/m/n/10 logical. If \T1/fi4/m/n/10 TRUE\T1/ptm/m/n/10 , the lines whic
h di-vide ad-ja-cent (non-stacked!) bars
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[][][]\T1/fi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/fi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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 []       \T1/fi4/m/n/10 adj = c(0, 0.5), text.width = NULL, text.col = par("co
l"), text.font = NULL,[] 
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/fi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/fi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/fi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that

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\T1/fi4/m/n/10 c([][]strwidth[][][](ch), [][]strheight[][][](ch)) \T1/ptm/m/n/1
0 for a given string \T1/fi4/m/n/10 ch \T1/ptm/m/n/10 is usu-ally much more pre
-
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/fi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[]\T1/ptm/m/n/10 a ex-pan-sion fac-tor ap-plied to the \T1/fi4/m/n/10 z \T1/ptm
/m/n/10 co-or-di-nates. Of-ten used with
[872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883]
[884] [885] [886] [887] [888] [889] [890] [891]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/fi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/fi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 For \T1/fi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly 
en-larged) usual plot-ting sym-bol (\T1/fi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn
. For
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1fi4.fd) [925]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/fi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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l.8575 \HeaderA{units}{Graphical Units}{units}
                                               [927] [928] [929] [930] [931])
(./grid-pkg.tex [932]
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/fi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/fi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/fi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
 de-scrib-ing ar-rows), but only
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/fi4/m/n/10 unit(rep(1, 3), c("npc", "strwidth", "inches"),        data=list
(NULL, "my string", NULL))\T1/ptm/m/n/10 . 
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\T1/ptm/m/n/10 pos-si-ble to add and sub-tract unit ob-jects (e.g., \T1/fi4/m/n
/10 unit(1, "npc") - unit(1, "inches")\T1/ptm/m/n/10 ),

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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1036] [1037] [1038] [1039]) (./methods-pkg.tex [1040]
Chapter 6.
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[]\T1/ptm/m/n/10 The class \T1/fi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/fi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/fi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/fi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/fi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/fi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/fi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/fi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/fi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/fi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[1092]
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[]\T1/ptm/m/n/10 The \T1/fi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/fi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/fi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment
[1105]
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/fi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/fi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/fi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/fi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/fi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/m/n/10 $initialize() \T1/ptm/m
/n/10 is equiv-a-lent to in-vok-ing the method
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                                                 [1137]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for \T1/fi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/fi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1174]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1175] [1176] [1177] [1178]) (./splines-pkg.tex
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189]
[1190] [1191] [1192]) (./stats-pkg.tex
Chapter 8.
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[1204] [1205]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/fi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/fi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/fi4/m/n/10 x \T1/ptm/m/n/10 and \T1/fi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
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[]\T1/fi4/m/n/10 var \T1/ptm/m/n/10 is just an-other in-ter-face to \T1/fi4/m/n
/10 cov\T1/ptm/m/n/10 , where \T1/fi4/m/n/10 na.rm \T1/ptm/m/n/10 is used to de
-ter-mine the de-fault for

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\T1/fi4/m/n/10 use \T1/ptm/m/n/10 when that is un-spec-i-fied. If \T1/fi4/m/n/1
0 na.rm \T1/ptm/m/n/10 is \T1/fi4/m/n/10 TRUE \T1/ptm/m/n/10 then the com-plete
 ob-ser-va-tions (rows)

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\T1/ptm/m/n/10 are used (\T1/fi4/m/n/10 use = "na.or.complete"\T1/ptm/m/n/10 ) 
to com-pute the vari-ance. Oth-er-wise, by de-fault
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\T1/ptm/m/n/10 For \T1/fi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 then \T1/fi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/fi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1288] [1289] [1290] [1291]
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/fi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

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[]\T1/fi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/fi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
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[]\T1/ptm/m/n/10 Either \T1/fi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1332] [1333] [1334] [1335] [1336]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
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[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/m/n/10 -pgamma(t, ..., lower = FALSE,
 log = TRUE)\T1/ptm/m/n/10 . 
[1346] [1347] [1348] [1349] [1350]
Underfull \hbox (badness 4518) in paragraph at lines 9839--9844
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2142) in paragraph at lines 10180--10183
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10199--10202
[]\T1/ptm/m/n/10 When \T1/fi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/fi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1356]
Underfull \hbox (badness 1708) in paragraph at lines 10261--10264
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1357] [1358] [1359] [1360] [1361]
Underfull \hbox (badness 1694) in paragraph at lines 10625--10628
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1362]
Underfull \hbox (badness 1867) in paragraph at lines 10644--10653
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1363] [1364] [1365] [1366] [1367] [1368] [1369]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.11083 \aliasA{hat}{influence.measures}{hat}
                                              [1370] [1371]
Underfull \hbox (badness 1484) in paragraph at lines 11207--11209
[]\T1/ptm/m/n/10 The func-tion \T1/fi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
Underfull \hbox (badness 4441) in paragraph at lines 11753--11755
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
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Underfull \hbox (badness 4518) in paragraph at lines 12700--12705
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 4518) in paragraph at lines 13318--13323
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414]
Overfull \hbox (5.6622pt too wide) in paragraph at lines 13863--13865
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/m/n/10 -plnorm(t, r, lower = FALSE, l
og = TRUE)\T1/ptm/m/n/10 . 
[1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 2503) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1426] [1427]
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[1429] [1430] [1431] [1432] [1433] [1434]
Underfull \hbox (badness 3009) in paragraph at lines 14985--14991
[]\T1/fi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445]
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
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[1475]
Underfull \hbox (badness 1377) in paragraph at lines 17468--17473
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17473--17476
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 17486--17490
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 2080) in paragraph at lines 17486--17490
\T1/ptm/m/n/10 the value by a fac-tor of \T1/fi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 17494--17498
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/fi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485]
Underfull \hbox (badness 1337) in paragraph at lines 18103--18106
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496]
[1497] [1498]
Underfull \hbox (badness 5563) in paragraph at lines 18830--18832
[]\T1/ptm/m/n/10 logical. If \T1/fi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 18833--18836
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1499] [1500] [1501] [1502] [1503]
Underfull \hbox (badness 1675) in paragraph at lines 19120--19123
[]\T1/ptm/m/n/10 Setting \T1/fi4/m/n/10 lower.tail = FALSE \T1/ptm/m/n/10 al-lo
ws to get much more pre-cise re-sults when the de-fault,
[1504]
Underfull \hbox (badness 2503) in paragraph at lines 19197--19200
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1505]
Underfull \hbox (badness 10000) in paragraph at lines 19224--19226
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518] [1519] [1520]
Underfull \hbox (badness 10000) in paragraph at lines 20189--20195
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/fi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531]
[1532] [1533] [1534] [1535] [1536] [1537]
Underfull \hbox (badness 2111) in paragraph at lines 21140--21145
[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/m/n/1
0 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/m/n/10 print.summary
.lm[][][]\T1/ptm/m/n/10 ,
[1538] [1539] [1540] [1541] [1542]
Underfull \hbox (badness 1337) in paragraph at lines 21478--21484
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553]
[1554]
Underfull \hbox (badness 10000) in paragraph at lines 22222--22225
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 1675) in paragraph at lines 22222--22225
\T1/fi4/m/n/10 cutree(hclust.obj, k = k)\T1/ptm/m/n/10 , can be spec-i-fied for
 ef-fi-ciency if al-ready
[1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564]
Underfull \hbox (badness 10000) in paragraph at lines 22797--22800
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/fi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 22846--22850
[][][]\T1/fi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from

Underfull \hbox (badness 1062) in paragraph at lines 22846--22850
\T1/fi4/m/n/10 runmed(*, endrule = "median")\T1/ptm/m/n/10 . [][]\T1/fi4/m/n/10
 smooth[][][] \T1/ptm/m/n/10 uses run-ning me-di-ans of 3 for its com-pound
[1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575]
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596]
Underfull \hbox (badness 3514) in paragraph at lines 24785--24790
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1597]
Underfull \hbox (badness 3514) in paragraph at lines 24847--24852
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1598]
Underfull \hbox (badness 3514) in paragraph at lines 24904--24909
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1599]
Underfull \hbox (badness 3514) in paragraph at lines 24965--24971
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1600] [1601] [1602]
Underfull \hbox (badness 2376) in paragraph at lines 25097--25100
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 , which is the value of the ex-pres-sion

Overfull \hbox (62.28088pt too wide) in paragraph at lines 25097--25100
\T1/fi4/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input)-exp(-exp(lKa)*in
put)) / (exp(lKa)-exp(lKe))\T1/ptm/m/n/10 . 
[1603]
Underfull \hbox (badness 3514) in paragraph at lines 25157--25162
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1604]
Underfull \hbox (badness 3514) in paragraph at lines 25213--25218
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1605]
Underfull \hbox (badness 3514) in paragraph at lines 25270--25275
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1606]
Underfull \hbox (badness 3514) in paragraph at lines 25325--25330
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1607]
Underfull \hbox (badness 6691) in paragraph at lines 25394--25399
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1608] [1609] [1610] [1611] [1612] [1613] [1614]
Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/fi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625]
Underfull \hbox (badness 5431) in paragraph at lines 26463--26465
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1626] [1627] [1628]
Underfull \hbox (badness 5431) in paragraph at lines 26666--26669
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1629] [1630] [1631] [1632] [1633] [1634]
Underfull \hbox (badness 1337) in paragraph at lines 26977--26981
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1635] [1636]
Underfull \hbox (badness 10000) in paragraph at lines 27094--27097
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/fi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1637] [1638]
Underfull \hbox (badness 1616) in paragraph at lines 27267--27270
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1639]
Underfull \hbox (badness 4518) in paragraph at lines 27291--27294
[]\T1/ptm/m/n/10 For the \T1/fi4/m/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-ti
on it must have a [][]\T1/fi4/m/n/10 residuals[][][] \T1/ptm/m/n/10 method that
 ac-cepts
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650]
[1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660]
Underfull \hbox (badness 1337) in paragraph at lines 28590--28594
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1661] [1662] [1663] [1664]
Overfull \hbox (28.1622pt too wide) in paragraph at lines 28838--28841
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/m/n/10 -pweibull(t, a, b, lower = FAL
SE, log = TRUE)
[1665] [1666] [1667] [1668]
Underfull \hbox (badness 1337) in paragraph at lines 29061--29065
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1669] [1670]
Underfull \hbox (badness 5161) in paragraph at lines 29154--29156
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1671] [1672] [1673] [1674] [1675]
Underfull \hbox (badness 10000) in paragraph at lines 29510--29515
[]\T1/ptm/m/n/10 There is a \T1/fi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/m/n/10 table \T1/ptm/m/n/10 or

Underfull \hbox (badness 1303) in paragraph at lines 29510--29515
\T1/fi4/m/n/10 xtabs(*, sparse=FALSE)\T1/ptm/m/n/10 , which gives ba-sic in-for
-ma-tion and per-forms a chi-squared test

Underfull \hbox (badness 1308) in paragraph at lines 29522--29525
[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/m/n/10 sparse=FALSE\T1/ptm/m/n/10 , 
a con-tin-gency ta-ble in ar-ray rep-re-sen-ta-tion of S3 class
[1676] [1677] [1678]) (./stats4-pkg.tex
Chapter 9.
[1679] [1680] [1681] [1682] [1683] [1684]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1685] [1686] [1687]
[1688]) (./tcltk-pkg.tex
Chapter 10.
[1689] [1690] [1691] [1692] [1693] [1694] [1695]
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Underfull \hbox (badness 1546) in paragraph at lines 644--651
[]\T1/fi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1698] [1699] [1700] [1701]
Underfull \vbox (badness 10000) has occurred while \output is active [1702]
[1703] [1704] [1705] [1706] [1707] [1708] [1709]) (./tools-pkg.tex [1710]
Chapter 11.

LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font)              using `T1/fi4/m/n' instead on input line 26.

[1711]
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\T1/fi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 120--135
\T1/fi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/fi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/fi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1712] [1713] [1714]
Underfull \hbox (badness 2080) in paragraph at lines 251--256
\T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph
a-bet-i-cally on the glyph

Underfull \hbox (badness 2644) in paragraph at lines 251--256
\T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data
 are in the file
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Underfull \hbox (badness 1635) in paragraph at lines 666--668
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1722] [1723]
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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\T1/fi4/m/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances"
)\T1/ptm/m/n/10 .

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/fi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 If \T1/fi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
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\T1/fi4/m/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances"
)\T1/ptm/m/n/10 .
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LaTeX Font Warning: Font shape `T1/fi4/m/sl' undefined
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[]\T1/fi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul
d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ;
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1762]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/fi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1763] [1764] [1765] [1766]) (./utils-pkg.tex
Chapter 12.
[1767]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/fi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/fi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
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[]\T1/ptm/m/n/10 Argument \T1/fi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/fi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/fi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/fi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/fi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/fi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/fi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1794] [1795] [1796] [1797] [1798] [1799]
Overfull \hbox (6.10922pt too wide) in paragraph at lines 2100--2103
[]\T1/ptm/m/n/10 files end-ing `\T1/fi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/fi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/fi4/m/sl/10 read.table[]
[][](..., header = TRUE, sep = ";")\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/fi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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\T1/fi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 logical or ex-pres-sion; if not \T1/fi4/m/sl/10 FALSE\T1/ptm/m
/n/10 , the ran-dom num-ber gen-er-a-tor state
[1814] [1815] [1816] [1817] [1818] [1819] [1820]pdfTeX warning (ext4): destinat
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<to be read again> 
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l.3428 ...mat Unordered and Ordered Lists}{format}
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                                                   [1821] [1822] [1823]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1833] [1834]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1835] [1836]
Underfull \hbox (badness 10000) in paragraph at lines 4452--4461
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1837] [1838]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1839]
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\T1/ptm/m/n/10 can be source archives or bi-nary pack-age archive files (as cre
-ated by
[1840]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

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\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

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\T1/ptm/m/n/10 used if \T1/fi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

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[]\T1/fi4/m/sl/10 TRUE \T1/ptm/m/n/10 means (as from \T1/phv/m/n/10 R \T1/ptm/m
/n/10 2.15.0) to use

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\T1/fi4/m/sl/10 c("Depends", "Imports", "LinkingTo", "Suggests") \T1/ptm/m/n/10
 for \T1/fi4/m/sl/10 pkgs \T1/ptm/m/n/10 and

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\T1/fi4/m/sl/10 c("Depends", "Imports", "LinkingTo") \T1/ptm/m/n/10 for added d
e-pen-den-cies: this

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[]\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/fi4/m/sl/10 configur
e.args \T1/ptm/m/n/10 for flag
[1841]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

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\T1/ptm/m/n/10 passed to \T1/fi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.
[1842]
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[][][]\T1/fi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853]
[1854] [1855] [1856] [1857] [1858] [1859] [1860]
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[]\T1/fi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

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[]\T1/ptm/m/n/10 If a `\T1/fi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1861] [1862]
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

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[][]\T1/fi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/fi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 the to-ken that was (or, is to be) com-pleted, as set by the l
ast call to
[1878] [1879]
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[]\T1/ptm/m/n/10 The name \T1/fi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1880] [1881]
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[1902] [1903] [1904] [1905]
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[][][]$\T1/fi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/fi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[1906] [1907] [1908]
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[]\T1/ptm/m/n/10 The de-fault for \T1/fi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 9071--9077
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/fi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 logical (\T1/fi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[1911] [1912] [1913] [1914] [1915] [1916]
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[]\T1/ptm/m/n/10 Repository `\T1/fi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[1917] [1918] [1919] [1920] [1921]
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[1922]
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\T1/ptm/m/n/10 strictly, one of the val-ues \T1/fi4/m/sl/10 c("no", "cut", "wra
p")\T1/ptm/m/n/10 . De-faults to the
[1923] [1924] [1925] [1926]
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

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\T1/ptm/m/n/10 and se-lected if their \T1/fi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[1927] [1928] [1929]
Underfull \hbox (badness 10000) in paragraph at lines 10434--10437
[][][]$\T1/fi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/m/sl/10 http : / / pubs . opengroup . 
org /

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\T1/fi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937]
Underfull \hbox (badness 10000) in paragraph at lines 10928--10930
[]\T1/ptm/m/n/10 Arguments such as \T1/fi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/fi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to

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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[1938]
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined

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\T1/ptm/m/n/10 see [][]\T1/fi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 .
 \T1/fi4/m/sl/10 available = NULL \T1/ptm/m/n/10 make a call to

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\T1/fi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T
1/ptm/m/n/10 and hence by de-

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[][][]\T1/fi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[1939] [1940]
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[]\T1/ptm/m/n/10 Characters in a URL other than the En-glish al-phanu-meric cha
r-ac-ters and
[1941] [1942] [1943] [1944] [1945]
Underfull \hbox (badness 10000) in paragraph at lines 11401--11403
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g.
[1946] [1947] [1948])
No file refman.ind.
(./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


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Chapter 1.
[1]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/fi4/bx/n/10 x \T
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1/ptm/m/n/10 if

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ing \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[2] [3]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/fi4/bx/n
/10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[4] [5] [6] [7]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/bx/n/10 insertions\T1/ptm/m/n/10 ',
[8] [9] [10] [11] [12] [13] [14] [15] [16]
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[]\T1/ptm/m/n/10 If the calls to \T1/fi4/bx/n/10 FUN \T1/ptm/m/n/10 re-turn vec
-tors of dif-fer-ent lengths, \T1/fi4/bx/n/10 apply \T1/ptm/m/n/10 re-turns a l
ist of length
[17] [18] [19]
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/m/n/10 and \T1/fi4/bx/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion
. It is guar-an-teed that

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\T1/fi4/bx/n/10 x == (x %% y) + y * (   x %/% y ) \T1/ptm/m/n/10 (up to round-i
ng er-ror) un-less \T1/fi4/bx/n/10 y == 0 \T1/ptm/m/n/10 where the
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[52] [53] [54] [55] [56] [57] [58] [59]
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[]\T1/ptm/m/n/10 Are the \T1/fi4/bx/n/10 R.app \T1/ptm/m/n/10 GUI com-po-nents 
and the [][]\T1/fi4/bx/n/10 quartz[][][] \T1/ptm/m/n/10 func-tion op-er-a-tiona
l?

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\T1/ptm/m/n/10 Only on some Mac OS X builds. Note that this is dis-tinct from
[60]
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[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/fi4/bx/n/10 svg[][][]\T1/ptm/m/n
/10 , [][]\T1/fi4/bx/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/fi4/bx/n/1
0 cairo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[61] [62] [63]
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\T1/fi4/bx/n/10 deparse.level = 0 \T1/ptm/m/n/10 con-structs no la-bels; the de
-fault,

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\T1/fi4/bx/n/10 deparse.level = 1 or 2 \T1/ptm/m/n/10 con-structs la-bels from 
the ar-gu-ment names,
[64] [65] [66] [67] [68]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[84] [85] [86] [87] [88] [89] [90] [91]
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[]\T1/ptm/m/n/10 A note on `\T1/fi4/bx/n/10 file://\T1/ptm/m/n/10 ' URLs. The m
ost gen-eral form (from RFC1738) is
[92] [93] [94]
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[]\T1/fi4/bx/n/10 file \T1/ptm/m/n/10 can be used with \T1/fi4/bx/n/10 descript
ion = "clipboard" \T1/ptm/m/n/10 in mode \T1/fi4/bx/n/10 "r" \T1/ptm/m/n/10 onl
y. This reads

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\T1/ptm/m/n/10 the X11 pri-mary se-lec-tion (see [][]$\T1/fi4/bx/n/10 http : / 
/ standards . freedesktop . org / clipboards-[]spec /
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[106]
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[][][]\T1/fi4/bx/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-
cord-ing to a group fac-tor; [][]\T1/fi4/bx/n/10 factor[][][]\T1/ptm/m/n/10 , [
][]\T1/fi4/bx/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 table[][]
[]\T1/ptm/m/n/10 ,
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[]\T1/fi4/bx/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments t
o a data frame by call-ing
[111]
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[][][]\T1/fi4/bx/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 plot.data.fra
me[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 print.data.frame[][][]\T1/ptm/m/n/
10 , [][]\T1/fi4/bx/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 na
mes[][][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/fi4/bx/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods
, [][]\T1/fi4/bx/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m
/it/10 Group \T1/ptm/m/n/10 meth-ods for
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\T1/fi4/bx/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") \T1/ptm/m/
n/10 may give \T1/fi4/bx/n/10 NA\T1/ptm/m/n/10 , and hence

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\T1/fi4/bx/n/10 as.POSIXct("1969-12-31 23:59:59",  tz = "UTC") \T1/ptm/m/n/10 w
ill give \T1/fi4/bx/n/10 "1969-12-31 23:59:00"\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/fi4/bx/n/10 difftime \T1/ptm/m/n/10 with
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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / 
wiki / IEEE _
[142] [143] [144] [145] [146] [147]
Underfull \hbox (badness 2150) in paragraph at lines 9389--9392
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9402--9410
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160] [161] [162] [163]
Underfull \hbox (badness 4569) in paragraph at lines 10467--10471
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 10467--10471
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[164] [165] [166] [167] [168] [169] [170] [171]
Underfull \hbox (badness 2698) in paragraph at lines 11007--11016
[]\T1/ptm/m/n/10 Both \T1/fi4/bx/n/10 $ \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 [[ \
T1/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are
 al-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11007--11016
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]
[184] [185]
Underfull \hbox (badness 2253) in paragraph at lines 11938--11940
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[186]
Underfull \hbox (badness 1565) in paragraph at lines 11999--12003
[][][]\T1/fi4/bx/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-b
olic links, [][]\T1/fi4/bx/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 file.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.files[][][]\T1/ptm/
m/n/10 , and
[187]
Underfull \hbox (badness 10000) in paragraph at lines 12042--12044
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/b
x/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 with
[188]
Underfull \hbox (badness 1292) in paragraph at lines 12105--12113
\T1/ptm/m/n/10 ing spe-cial pager names be-ing in-ter-cepted by lower-level cod
e (such as \T1/fi4/bx/n/10 "internal" \T1/ptm/m/n/10 and
[189]
Underfull \hbox (badness 1466) in paragraph at lines 12173--12176
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/bx/n/10 file.copy \T1/ptm/m/n/10 and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 12272--12276
[][][]\T1/fi4/bx/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.
access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.path[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/bx/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.
files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 unlink[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12283--12286
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wik
i /
[191] [192] [193] [194]
Underfull \hbox (badness 3108) in paragraph at lines 12500--12507
[]\T1/ptm/m/n/10 Find the in-dices of \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 in \T1/f
i4/bx/n/10 vec\T1/ptm/m/n/10 , where \T1/fi4/bx/n/10 vec \T1/ptm/m/n/10 must be
 sorted (non-decreasingly); i.e., if

Underfull \hbox (badness 3965) in paragraph at lines 12537--12541
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205]
Underfull \hbox (badness 4429) in paragraph at lines 13229--13232
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/bx/n/10 complex[][][] \T1/ptm/m/n/10 only for
[206]
Underfull \hbox (badness 10000) in paragraph at lines 13315--13317
[]\T1/ptm/m/n/10 If you set \T1/fi4/bx/n/10 format \T1/ptm/m/n/10 it over-rides
 the set-ting of \T1/fi4/bx/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 13321--13325
[]\T1/fi4/bx/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-
bers on the dec-i-mal point, so
[207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
[219]
Underfull \hbox (badness 1092) in paragraph at lines 14074--14079
[][]\T1/fi4/bx/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter 
the DLL has been loaded us-ing
[220] [221] [222]
Underfull \hbox (badness 6741) in paragraph at lines 14320--14324
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/bx/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 CallRoutine\T1/ptm/m/n/
10 ,
[223] [224] [225] [226] [227]
Underfull \hbox (badness 1867) in paragraph at lines 14627--14634
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[228] [229] [230] [231]
Underfull \vbox (badness 10000) has occurred while \output is active [232]
[233]
Underfull \hbox (badness 3679) in paragraph at lines 14999--15001
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/fi4/bx/n/10 htt
p : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 1478) in paragraph at lines 15467--15470
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[241] [242] [243] [244] [245] [246] [247]
Overfull \hbox (17.37834pt too wide) in paragraph at lines 15902--15905
[]\T1/ptm/m/n/10 Sometimes it is bet-ter to use a con-struc-tion such as \T1/fi
4/bx/n/10 (tmp <- yes; tmp[!test] <- no[!test]; tmp)\T1/ptm/m/n/10 ,
[248] [249] [250]
Underfull \hbox (badness 1442) in paragraph at lines 16138--16140
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/bx/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[251]
Underfull \hbox (badness 2452) in paragraph at lines 16230--16246
[][][]\T1/fi4/bx/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.complex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.double[][][]\T1/ptm/m/n/1
0 , [][]\T1/fi4/bx/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.logical[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.raw[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/bx/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262]
Underfull \hbox (badness 4739) in paragraph at lines 16873--16875
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[263] [264] [265] [266] [267] [268]
Underfull \hbox (badness 1642) in paragraph at lines 17254--17259
[]\T1/fi4/bx/n/10 sapply \T1/ptm/m/n/10 is a user-friendly ver-sion and wrap-pe
r of \T1/fi4/bx/n/10 lapply \T1/ptm/m/n/10 by de-fault re-turn-ing a vec-tor,
[269] [270] [271] [272] [273] [274] [275]
Underfull \hbox (badness 10000) in paragraph at lines 17728--17732
[]\T1/ptm/m/n/10 By de-fault \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, a
nd \T1/fi4/bx/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 17728--17732
\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/bx/
n/10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `
\T1/fi4/bx/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/bx/n/10 /library\T1/ptm/m/
n/10 '
[276] [277] [278]
Underfull \hbox (badness 1014) in paragraph at lines 17893--17898
[]\T1/ptm/m/n/10 Normally \T1/fi4/bx/n/10 library \T1/ptm/m/n/10 re-turns (in-v
is-i-bly) the list of at-tached pack-ages, but \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n
/10 or \T1/fi4/bx/n/10 FALSE \T1/ptm/m/n/10 if
[279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289]
Underfull \hbox (badness 1264) in paragraph at lines 18584--18589
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[290] [291] [292] [293] [294] [295]
Underfull \hbox (badness 4954) in paragraph at lines 18996--19002
[]\T1/fi4/bx/n/10 as.logical \T1/ptm/m/n/10 at-tempts to co-erce its ar-gu-ment
 to be of log-i-cal type. For [][]\T1/fi4/bx/n/10 factor[][][]\T1/ptm/m/n/10 s,


Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 this uses the [][]\T1/fi4/bx/n/10 levels[][][] \T1/ptm/m/n/10 (l
a-bels). Like [][]\T1/fi4/bx/n/10 as.vector[][][] \T1/ptm/m/n/10 it strips at-t
ributes in-clud-ing

Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 names. Char-ac-ter strings \T1/fi4/bx/n/10 c("T", "TRUE", "True"
, "true") \T1/ptm/m/n/10 are re-garded as true,
[296] [297] [298] [299]
Underfull \hbox (badness 10000) in paragraph at lines 19241--19243
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/bx/n/10 make.unique \T1/ptm/m/
n/10 has the prop-erty that
[300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311]
[312] [313] [314] [315]
Underfull \hbox (badness 1655) in paragraph at lines 20219--20225
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[316] [317]
Underfull \hbox (badness 1484) in paragraph at lines 20368--20376
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[318] [319] [320] [321]
Underfull \hbox (badness 2790) in paragraph at lines 20622--20625
[]\T1/fi4/bx/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-
sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 20622--20625
\T1/fi4/bx/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still 
mes-sages, so can be sup-pressed by
[322] [323] [324] [325] [326] [327] [328]
Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340]
[341] [342] [343] [344]
Underfull \hbox (badness 1199) in paragraph at lines 22082--22088
[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 is.numeric \T1/ptm/m/n
/10 re-turns \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mo
de[][][] \T1/fi4/bx/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22082--22088
\T1/ptm/m/n/10 ([][]type[][][] \T1/fi4/bx/n/10 "double" \T1/ptm/m/n/10 or type 
\T1/fi4/bx/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/fi4/bx/n/1
0 FALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[345] [346] [347] [348] [349] [350] [351]
Underfull \hbox (badness 1038) in paragraph at lines 22610--22619
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 10000) in paragraph at lines 22610--22619
\T1/fi4/bx/n/10 c("datasets", "utils", "grDevices", "graphics", "stats",       
 "methods")\T1/ptm/m/n/10 .
[352]
Underfull \hbox (badness 6220) in paragraph at lines 22634--22636
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


Underfull \hbox (badness 10000) in paragraph at lines 22696--22705
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/b
x/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2600) in paragraph at lines 22696--22705
\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx/n/10 /bin/pager\T1/p
tm/m/n/10 ', which se-lects a pager via the \T1/fi4/bx/n/10 PAGER \T1/ptm/m/n/1
0 en-vi-ron-ment vari-able

Underfull \hbox (badness 2142) in paragraph at lines 22706--22712
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/bx/n/10 postsc
ript[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
[353]
Underfull \hbox (badness 1968) in paragraph at lines 22719--22724
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/bx/n/10 postscript[][][] \T1/
ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 22729--22738
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[354] [355] [356]
Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/bx
/n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/bx/n/10 "http://www.bioconductor.org"
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 ror `\T1/fi4/bx/n/10 "http://bioconductor.statistik.tu-dortmund.
de"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 22982--22985
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/bx/n/10 create.post[]
[][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/m/n/
10 and

Underfull \hbox (badness 2689) in paragraph at lines 23003--23005
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23031--23034
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/bx/n/10 create.po
st[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/
m/n/10 and

Underfull \hbox (badness 2680) in paragraph at lines 23041--23047
\T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dow
s uses \T1/fi4/bx/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/bx/n/10 "mac.binar
y" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/fi4/bx/n/10 upd
ate.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/bx/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-
i-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23049--23056
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/bx/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.c
ran";
[357] [358] [359] [360] [361]
Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/fi4/bx/n/10 X \T1/ptm/m/
n/10 and \T1/fi4/bx/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/fi4/bx/n/10 A \T1/p
tm/m/n/10 with di-men-

Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
\T1/ptm/m/n/10 sion \T1/fi4/bx/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e
-ment \T1/fi4/bx/n/10 A[c(arrayindex.x, arrayindex.y)]
[362] [363] [364] [365]
Underfull \hbox (badness 1748) in paragraph at lines 23608--23612
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 2726) in paragraph at lines 24096--24099
[]\T1/ptm/m/n/10 character string (or \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 ) in-d
i-cat-ing [][]\T1/fi4/bx/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-pu
t, see
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385]
[386]
Underfull \hbox (badness 1052) in paragraph at lines 24872--24877
[]\T1/fi4/bx/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/
10 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vid
ed
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1097) in paragraph at lines 25248--25256
[]\T1/ptm/m/n/10 The seed, \T1/fi4/bx/n/10 .Random.seed[-1] == r[1:3] \T1/ptm/m
/n/10 is an in-te-ger vec-tor of length
[393] [394] [395] [396]
Underfull \hbox (badness 1533) in paragraph at lines 25562--25565
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407] [408]
[409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420]
[421] [422] [423]
Underfull \hbox (badness 6188) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/bx/n/10 http : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
[424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435]
[436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 10000) in paragraph at lines 28396--28400
[]\T1/fi4/bx/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my 
cur-rent workspace', i.e.,
[442] [443] [444]
Underfull \hbox (badness 2302) in paragraph at lines 28602--28609
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/bx/n/10 center=TRUE\T1/ptm/m/n/10 ,
 this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[445] [446]
Underfull \hbox (badness 2261) in paragraph at lines 28755--28760
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 strip.white \T1/ptm/m/n/10 is of length 1, 
it ap-plies to all fields; oth-er-wise, if
[447]
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[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

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\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 \a, \b, \f, \n, \r, \t, \v\T1/ptm/m/n/10 ' and 
oc-tal and hex-adec-i-mal rep-re-sen-ta-
[448]
Underfull \hbox (badness 10000) in paragraph at lines 28855--28860
[]\T1/ptm/m/n/10 Note that since \T1/fi4/bx/n/10 sep \T1/ptm/m/n/10 is a sep-a-
ra-tor and not a ter-mi-na-tor, read-ing a file by

Underfull \hbox (badness 1946) in paragraph at lines 28855--28860
\T1/fi4/bx/n/10 scan("foo", sep="\n", blank.lines.skip=FALSE) \T1/ptm/m/n/10 wi
ll give an empty fi-nal line if the
[449] [450] [451] [452] [453]
Underfull \hbox (badness 6188) in paragraph at lines 29189--29192
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence \T1/fi4/bx
/n/10 1, 2, ...,    length(along.with)\T1/ptm/m/n/10 .
[454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465]
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[478]
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Underfull \hbox (badness 5008) in paragraph at lines 31395--31407
[]\T1/ptm/m/n/10 The \T1/fi4/bx/n/10 srcref \T1/ptm/m/n/10 func-tion pro-duces 
an ob-ject of class \T1/fi4/bx/n/10 srcref\T1/ptm/m/n/10 , which de-scribes a r
ange

Underfull \hbox (badness 6141) in paragraph at lines 31395--31407
\T1/ptm/m/n/10 of char-ac-ters in a    \T1/fi4/bx/n/10 srcfile\T1/ptm/m/n/10 . 
The \T1/fi4/bx/n/10 lloc \T1/ptm/m/n/10 value gives the fol-low-ing val-ues: \T
1/fi4/bx/n/10 c

Overfull \hbox (112.28088pt too wide) in paragraph at lines 31395--31407
\T1/fi4/bx/n/10 (first_line, first_byte, last_line, last_byte, first_column,  l
ast_column, first_parsed, last_parsed)\T1/ptm/m/n/10 .
[489] [490]
Underfull \hbox (badness 1072) in paragraph at lines 31552--31556
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31557--31561
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/bx/n/10 --vanilla\T1/ptm/m/n
/10 ' im-plies `\T1/fi4/bx/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/bx/n/1
0 --no-init-file\T1/ptm/m/n/10 ',

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\T1/ptm/m/n/10 and `\T1/fi4/bx/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked fo
r first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx
/n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[491] [492] [493] [494]
Overfull \hbox (5.98903pt too wide) in paragraph at lines 31806--31809
[]\T1/fi4/bx/n/10 stopifnot(A, B) \T1/ptm/m/n/10 is con-cep-tu-ally equiv-a-len
t to \T1/fi4/bx/n/10 { if(any(is.na(A)) || !all(A)) stop(...) ;
[495]
Underfull \hbox (badness 10000) in paragraph at lines 31870--31876
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/bx/n/10 for
mat \T1/ptm/m/n/10 meth-ods is
[496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507]
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
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[]\T1/ptm/m/n/10 Argument \T1/fi4/bx/n/10 names \T1/ptm/m/n/10 was in-tro-duced
 in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of

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Underfull \hbox (badness 1472) in paragraph at lines 34102--34105
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , func-tions ke
ep their source in-clud-ing com-ments, see
[532] [533] [534] [535] [536] [537] [538] [539]
Underfull \hbox (badness 4217) in paragraph at lines 34611--34614
[]\T1/ptm/m/n/10 Because of the way it is im-ple-mented, on a Unix-alike \T1/fi
4/bx/n/10 stderr =     TRUE \T1/ptm/m/n/10 im-plies
[540] [541]
Underfull \hbox (badness 2671) in paragraph at lines 34746--34749
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/fi4/bx/n/10 ...\T1/p
tm/m/n/10 . If set to \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 35139--35142
[][][]\T1/fi4/bx/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$http : / / developer . r-[]project . org /
[548] [549]
Underfull \hbox (badness 10000) in paragraph at lines 35260--35264
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 getTaskCallbackNa
mes[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[550]
Underfull \hbox (badness 10000) in paragraph at lines 35322--35326
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 taskCallbackManag
er[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[551] [552] [553] [554] [555] [556] [557] [558] [559] [560]
Underfull \hbox (badness 10000) in paragraph at lines 35939--35941
[]\T1/ptm/m/n/10 Using [][]\T1/fi4/bx/n/10 setBreakpoint[][][] \T1/ptm/m/n/10 (
from pack-age \T1/ptm/b/n/10 utils\T1/ptm/m/n/10 ) may be an al-ter-na-tive, ca
ll-ing
[561] [562] [563] [564] [565] [566] [567]
Underfull \hbox (badness 1990) in paragraph at lines 36440--36448
[]\T1/fi4/bx/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any 
er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36440--36448
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/bx/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[568] [569] [570] [571] [572]
Underfull \hbox (badness 1515) in paragraph at lines 36706--36711
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[573] [574] [575]
Underfull \hbox (badness 1917) in paragraph at lines 36929--36936
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/fi4/bx/n/10 UseMethod("fun") \T1
/ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[576] [577] [578] [579] [580] [581] [582] [583] [584]
Underfull \hbox (badness 3668) in paragraph at lines 37494--37496
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[585]
Underfull \hbox (badness 2401) in paragraph at lines 37594--37598
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/bx/n/10 options[][][]("wa
rn") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[586] [587] [588]
Underfull \hbox (badness 10000) in paragraph at lines 37770--37775
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/fi4/
bx/n/10 x \T1/ptm/m/n/10 is an [][]\T1/fi4/bx/n/10 array[][][] \T1/ptm/m/n/10 (
has a [][]\T1/fi4/bx/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is

Underfull \hbox (badness 1454) in paragraph at lines 37770--37775
\T1/fi4/bx/n/10 arrayInd(which(x), dim(x), dimnames(x))\T1/ptm/m/n/10 , namely 
a ma-trix whose rows each are the
[589] [590] [591] [592] [593] [594] [595] [596] [597]
Underfull \hbox (badness 5417) in paragraph at lines 38279--38283
[]\T1/fi4/bx/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rent
ly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[598]
Underfull \hbox (badness 10000) in paragraph at lines 38332--38336
[]\T1/fi4/bx/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dar
d' reg-exps, in-clud-ing el-e-ments named
[599]) (./datasets-pkg.tex [600]
Chapter 2.
[601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 691--693
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[613] [614]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 823--825
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[615] [616] [617] [618] [619]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 1128--1130
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[620] [621] [622] [623] [624] [625] [626] [627] [628]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 1699--1701
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[629] [630] [631] [632] [633] [634] [635] [636]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 2120--2122
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[637] [638] [639] [640] [641] [642] [643] [644]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 2597--2599
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[645]
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[648] [649] [650] [651] [652] [653] [654] [655]
Overfull \vbox (20.49605pt too high) has occurred while \output is active
[656] [657] [658] [659] [660] [661]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 3561--3563
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[662] [663] [664] [665]
Underfull \hbox (badness 1325) in paragraph at lines 3796--3799
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/bx/n/10 http : / / www . sonic . net /
[666]
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Underfull \vbox (badness 10000) has occurred while \output is active [672]
[673] [674] [675] [676] [677] [678] [679]) (./grDevices-pkg.tex [680]
Chapter 3.
[681] [682] [683] [684]
Underfull \hbox (badness 1484) in paragraph at lines 274--278
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/fi4/bx/n/10 c(mi, ma, n.)\T1/
ptm/m/n/10 , with iden-ti-cal mean-ing to
[685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696]
[697]
Underfull \hbox (badness 5175) in paragraph at lines 1047--1049
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[698] [699] [700]
Underfull \hbox (badness 1852) in paragraph at lines 1237--1240
[]\T1/fi4/bx/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col
-ors that will be used in plot-ting, call-ing
[701] [702] [703]
Underfull \hbox (badness 1490) in paragraph at lines 1439--1444
\T1/ptm/m/n/10 by [][]\T1/fi4/bx/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]
\T1/fi4/bx/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/fi4/bx
/n/10 "no"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "yes" \T1/ptm/m/n/10 and
[704]
Underfull \hbox (badness 2698) in paragraph at lines 1493--1496
[]\T1/fi4/bx/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture
, oth-er-wise a ma-trix of color names (for
[705]
Underfull \hbox (badness 10000) in paragraph at lines 1562--1566
[]\T1/ptm/m/n/10 logical; if \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , the func-tion
 also re-turns \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 when

Underfull \hbox (badness 6332) in paragraph at lines 1562--1566
[][]\T1/fi4/bx/n/10 .Device[][][] == "null device" \T1/ptm/m/n/10 and [][]\T1/f
i4/bx/n/10 getOption[][][]("device") \T1/ptm/m/n/10 is among the
[706] [707] [708] [709]
Underfull \hbox (badness 1033) in paragraph at lines 1845--1858
\T1/fi4/bx/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pgnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "ppmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pkmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3758) in paragraph at lines 1845--1858
\T1/fi4/bx/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiffg32d"\T1/ptm/m/n/
10 , \T1/fi4/bx/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tifflzw"\T1/ptm/
m/n/10 , \T1/fi4/bx/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff12nc"\
T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3128) in paragraph at lines 1845--1858
\T1/fi4/bx/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "psgray"\T1
/ptm/m/n/10 , \T1/fi4/bx/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bit"\T1/
ptm/m/n/10 , \T1/fi4/bx/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bitcmyk"
\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngmono"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1546) in paragraph at lines 1845--1858
\T1/fi4/bx/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngalpha"\T1/ptm/m/n
/10 , \T1/fi4/bx/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png256"\T1/ptm/m
/n/10 , \T1/fi4/bx/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png48"\T1/ptm
/m/n/10 , \T1/fi4/bx/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "jpeggray"\T1/
ptm/m/n/10 ,
[710] [711]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[712] [713]
Underfull \hbox (badness 6758) in paragraph at lines 2105--2108
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[714] [715] [716]
Overfull \hbox (80.83pt too wide) in paragraph at lines 2249--2251
[]\T1/ptm/m/n/10 Navigation keys, passed as one of \T1/fi4/bx/n/10 "Left", "Up"
, "Right", "Down",     "PgUp", "PgDn", "End", "Home" 
[717] [718] [719] [720] [721]
Underfull \hbox (badness 10000) in paragraph at lines 2602--2603

[722] [723] [724] [725] [726] [727] [728]
Underfull \hbox (badness 1755) in paragraph at lines 3040--3042
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/fi4/bx/n/10 nr, nc \T1/ptm/
m/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[729] [730] [731] [732] [733]
Underfull \hbox (badness 7851) in paragraph at lines 3349--3352
[]\T1/ptm/m/n/10 For use with \T1/fi4/bx/n/10 onefile = FALSE \T1/ptm/m/n/10 gi
ve a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3363--3365
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/fi4/bx/n/10 /Title\T1/ptm/m
/n/10 ' field in the file. De-faults to
[734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745]
[746] [747] [748] [749] [750]
Underfull \hbox (badness 1789) in paragraph at lines 4400--4402
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/fi4/bx/n/10 Title \T1/ptm/m/
n/10 com-ment in the file. De-faults to

Underfull \hbox (badness 1377) in paragraph at lines 4450--4455
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[751]
Underfull \hbox (badness 2671) in paragraph at lines 4477--4485
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/fi4/
bx/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi
4/bx/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \
T1/fi4/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T
1/ptm/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/fi4/bx/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[754]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4
/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T1/ptm/
m/n/10 ,

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\T1/fi4/bx/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Palatin
o" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/bx/n/10 "
URWGothic"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "URWBookman"\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 can be found at [][]$\T1/fi4/bx/n/10 ftp : / / ftp . gnu . org /
 pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/bx/n/10 ftp : / / ft
p . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[759] [760]
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[]\T1/ptm/m/n/10 arguments \T1/fi4/bx/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 family\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 title\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 fonts\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 bg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 width\T
1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/fi4/bx/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (re
d/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/fi4/bx/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK
 lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/bx/n/
10 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/bx/n/10 
number[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[784] [785] [786]) (./graphics-pkg.tex
Chapter 4.
[787] [788] [789]
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[]\T1/ptm/m/n/10 For each \T1/fi4/bx/n/10 i\T1/ptm/m/n/10 , an ar-row is drawn 
be-tween the point \T1/fi4/bx/n/10 (x0[i],    y0[i]) \T1/ptm/m/n/10 and the poi
nt
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[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 at = NULL\T1/ptm/m/n/10 , pretty tick mar
k lo-ca-tions are com-puted in-ter-nally (the same way
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[]\T1/fi4/bx/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/
ptm/m/n/10 in-ter-face to the C func-tion \T1/fi4/bx/n/10 CreateAtVector() \T1/
ptm/m/n/10 in
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[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , the lines whi
ch di-vide ad-ja-cent (non-stacked!) bars
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[][][]\T1/fi4/bx/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works
 nowa-days with data.frames; [][]\T1/fi4/bx/n/10 boxplot.formula[][][]\T1/ptm/m
/n/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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 []       \T1/fi4/bx/n/10 adj = c(0, 0.5), text.width = NULL, text.col = par("c
ol"), text.font = NULL,[] 
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/fi4/bx/
n/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/fi4/bx/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 par("cin")/par("pi
n") \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that

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\T1/fi4/bx/n/10 c([][]strwidth[][][](ch), [][]strheight[][][](ch)) \T1/ptm/m/n/
10 for a given string \T1/fi4/bx/n/10 ch \T1/ptm/m/n/10 is usu-ally much more p
re-
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/fi4/bx/n/10 lty = 
2:6\T1/ptm/m/n/10 ) cor-re-spond to
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[]\T1/ptm/m/n/10 a ex-pan-sion fac-tor ap-plied to the \T1/fi4/bx/n/10 z \T1/pt
m/m/n/10 co-or-di-nates. Of-ten used with
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/fi4/bx/n/10 i\T1/ptm/m/n/10 , a line seg-ment is 
drawn be-tween the point \T1/fi4/bx/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the 
point
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[]\T1/ptm/m/n/10 For \T1/fi4/bx/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly
 en-larged) usual plot-ting sym-bol (\T1/fi4/bx/n/10 pch\T1/ptm/m/n/10 ) is dra
wn. For
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1fi4.fd) [925]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/fi4/bx/n/10 pa
r("font.sub") \T1/ptm/m/n/10 and color
[926]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8575 \HeaderA{units}{Graphical Units}{units}
                                               [927] [928] [929] [930] [931])
(./grid-pkg.tex [932]
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/bx/n/10 preDrawDetails \T1/ptm/m/n/10 and \T
1/fi4/bx/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-t
ion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/bx/n/10 pushViewport[][][]\T1/ptm/
m/n/10 , [][]\T1/fi4/bx/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n
/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 seekViewport[][][]\T
1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4
/bx/n/10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
 de-scrib-ing ar-rows), but only
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1004] [1005] [1006] [1007] [1008]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/fi4/bx/n/10 unit(rep(1, 3), c("npc", "strwidth", "inches"),        data=lis
t(NULL, "my string", NULL))\T1/ptm/m/n/10 . 
[1027]
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\T1/ptm/m/n/10 pos-si-ble to add and sub-tract unit ob-jects (e.g., \T1/fi4/bx/
n/10 unit(1, "npc") - unit(1, "inches")\T1/ptm/m/n/10 ),

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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1036] [1037] [1038] [1039]) (./methods-pkg.tex [1040]
Chapter 6.
[1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051]
[1052] [1053] [1054] [1055] [1056]
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "className" \T1/ptm/m/n/10 ex-tends 
\T1/fi4/bx/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/bx/n/10 "pack
age"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/fi4/bx/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests
[1069]
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/10 
can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/
10 it calls \T1/fi4/bx/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/bx/n/10 setGeneric[][][] \T1/
ptm/m/n/10 and [][]\T1/fi4/bx/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate
 ob-jects of class
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[]\T1/ptm/m/n/10 In \T1/fi4/bx/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/fi4/bx/n
/10 TRUE\T1/ptm/m/n/10 , the \T1/fi4/bx/n/10 package \T1/ptm/m/n/10 slot of the
 re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/bx/n/10 removeGeneric \T1/ptm/m/n/10 re-m
oves the func-tion it-self; \T1/fi4/bx/n/10 removeMethods \T1/ptm/m/n/10 re-sto
res the
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[]\T1/ptm/m/n/10 The \T1/fi4/bx/n/10 initialize \T1/ptm/m/n/10 method for these
 classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "SealedMethodDefinition" \T1/ptm/m/n
/10 is cre-ated by a call to [][]\T1/fi4/bx/n/10 setMethod[][][] \T1/ptm/m/n/10
 with ar-gu-ment
[1105]
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/bx/n/10 MethodsList[][][] \T1/ptm/m/n/10 for
 the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/fi4/bx/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\
T1/fi4/bx/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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[1114]
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/fi4/bx/n/10 "track" \T1/ptm/m/n/10 for 
\T1/fi4/bx/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other me
th-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/fi4/bx/n/10 "PossibleMethod" \T1/ptm/m/n/1
0 the method to use in re-sponse to a
[1115] [1116] [1117] [1118] [1119] [1120]
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1121] [1122] [1123]
Underfull \hbox (badness 2221) in paragraph at lines 5745--5750
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/bx/n/10 initialize \T1/ptm/m/n/10 and
[1124] [1125] [1126] [1127]
Underfull \hbox (badness 10000) in paragraph at lines 6106--6122
[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 $initialize() \T1/ptm/
m/n/10 is equiv-a-lent to in-vok-ing the method
[1128] [1129] [1130]
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                   \relax 
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                                                 [1137]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1138] [1139] [1140]
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[]\T1/ptm/m/n/10 for \T1/fi4/bx/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only,
 a [][]\T1/fi4/bx/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-c
ally
[1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151]
[1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162]
[1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173]
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/bx/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1174]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1175] [1176] [1177] [1178]) (./splines-pkg.tex
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/bx/n/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189]
[1190] [1191] [1192]) (./stats-pkg.tex
Chapter 8.
[1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203]
[1204] [1205]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/bx/n/10 lm
 \T1/ptm/m/n/10 or \T1/fi4/bx/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1214] [1215] [1216]
Underfull \hbox (badness 10000) in paragraph at lines 1495--1499
[]\T1/ptm/m/n/10 An ob-ject of class \T1/fi4/bx/n/10 c("aov", "lm") \T1/ptm/m/n
/10 or for mul-ti-ple re-sponses of class
[1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1227] [1228] [1229] [1230] [1231]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1243] [1244]
Underfull \hbox (badness 2503) in paragraph at lines 3230--3233
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255]
[1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273]
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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 y \T1/ptm/m/n/10 i
s given by
[1274] [1275] [1276]
Underfull \hbox (badness 1603) in paragraph at lines 5244--5249
[]\T1/fi4/bx/n/10 var \T1/ptm/m/n/10 is just an-other in-ter-face to \T1/fi4/bx
/n/10 cov\T1/ptm/m/n/10 , where \T1/fi4/bx/n/10 na.rm \T1/ptm/m/n/10 is used to
 de-ter-mine the de-fault for

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\T1/fi4/bx/n/10 use \T1/ptm/m/n/10 when that is un-spec-i-fied. If \T1/fi4/bx/n
/10 na.rm \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 then the com-pl
ete ob-ser-va-tions (rows)

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\T1/ptm/m/n/10 are used (\T1/fi4/bx/n/10 use = "na.or.complete"\T1/ptm/m/n/10 )
 to com-pute the vari-ance. Oth-er-wise, by de-fault
[1277]
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\T1/ptm/m/n/10 For \T1/fi4/bx/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method i
s un-usual but avail-able for the sake of com-plete-
[1278] [1279]
Underfull \hbox (badness 2503) in paragraph at lines 5393--5397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1280]
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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1281] [1282] [1283] [1284] [1285] [1286] [1287]
Underfull \hbox (badness 8132) in paragraph at lines 5892--5897
\T1/ptm/m/n/10 then \T1/fi4/bx/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the s
ame graph struc-ture as \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 and for each node,
[1288] [1289] [1290] [1291]
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/bx/n/10 "hclust" \T1/ptm/m/n/10 can b
e con-verted to class \T1/fi4/bx/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method


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[]\T1/fi4/bx/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gr
am \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1292] [1293] [1294] [1295] [1296]
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[1298] [1299] [1300] [1301] [1302] [1303] [1304]
Underfull \hbox (badness 10000) in paragraph at lines 6950--6953
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/bx/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1305] [1306]
Underfull \hbox (badness 10000) in paragraph at lines 7087--7090
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/bx/n/10 h
ttp : / / cran . r-[]project . org / web / views /
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
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[1327] [1328] [1329]
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[]\T1/ptm/m/n/10 Either \T1/fi4/bx/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4
/bx/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1330] [1331]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1332] [1333] [1334] [1335] [1336]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Fligner-Killeen test o
f homogeneity of variances"\T1/ptm/m/n/10 . 
[1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Overfull \hbox (15.6622pt too wide) in paragraph at lines 9555--9557
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -pgamma(t, ..., lower = FALSE
, log = TRUE)\T1/ptm/m/n/10 . 
[1346] [1347] [1348] [1349] [1350]
Underfull \hbox (badness 4518) in paragraph at lines 9839--9844
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2142) in paragraph at lines 10180--10183
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10199--10202
[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 trace \T1/ptm/m/n/10 is true, calls to []
[]\T1/fi4/bx/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS i
t-er-a-tion. Hence,
[1356]
Underfull \hbox (badness 1708) in paragraph at lines 10261--10264
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1357] [1358] [1359] [1360] [1361]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1362]
Underfull \hbox (badness 1867) in paragraph at lines 10644--10653
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1363] [1364] [1365] [1366] [1367] [1368] [1369]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.11083 \aliasA{hat}{influence.measures}{hat}
                                              [1370] [1371]
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[]\T1/ptm/m/n/10 The func-tion \T1/fi4/bx/n/10 hat() \T1/ptm/m/n/10 ex-ists mai
nly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
Underfull \hbox (badness 4441) in paragraph at lines 11753--11755
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
[1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391]
[1392] [1393] [1394] [1395] [1396]
Underfull \hbox (badness 4518) in paragraph at lines 12700--12705
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414]
Overfull \hbox (5.6622pt too wide) in paragraph at lines 13863--13865
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -plnorm(t, r, lower = FALSE, 
log = TRUE)\T1/ptm/m/n/10 . 
[1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 2503) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1426] [1427]
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[1429] [1430] [1431] [1432] [1433] [1434]
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[]\T1/fi4/bx/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 model.respons
e \T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/bx/n/10 model.extract(, "offset") 
\T1/ptm/m/n/10 and
[1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445]
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
[1457] [1458] [1459] [1460] [1461]
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[1475]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 2080) in paragraph at lines 17486--17490
\T1/ptm/m/n/10 the value by a fac-tor of \T1/fi4/bx/n/10 reltol * (abs(val) + r
eltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 17494--17498
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/bx/n/10 "BFGS"\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "SANN
" \T1/ptm/m/n/10 meth-ods if
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485]
Underfull \hbox (badness 1337) in paragraph at lines 18103--18106
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496]
[1497] [1498]
Underfull \hbox (badness 5563) in paragraph at lines 18830--18832
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , add to al-rea
dy ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 18833--18836
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1499] [1500] [1501] [1502] [1503]
Underfull \hbox (badness 1675) in paragraph at lines 19120--19123
[]\T1/ptm/m/n/10 Setting \T1/fi4/bx/n/10 lower.tail = FALSE \T1/ptm/m/n/10 al-l
ows to get much more pre-cise re-sults when the de-fault,
[1504]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1505]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Exact Poisson test" \T
1/ptm/m/n/10 or
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518] [1519] [1520]
Underfull \hbox (badness 10000) in paragraph at lines 20189--20195
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/bx/n/10 predict.ar[]
[][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531]
[1532] [1533] [1534] [1535] [1536] [1537]
Underfull \hbox (badness 2111) in paragraph at lines 21140--21145
[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/bx/n/
10 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/bx/n/10 print.summa
ry.lm[][][]\T1/ptm/m/n/10 ,
[1538] [1539] [1540] [1541] [1542]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553]
[1554]
Underfull \hbox (badness 10000) in paragraph at lines 22222--22225
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

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\T1/fi4/bx/n/10 cutree(hclust.obj, k = k)\T1/ptm/m/n/10 , can be spec-i-fied fo
r ef-fi-ciency if al-ready
[1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564]
Underfull \hbox (badness 10000) in paragraph at lines 22797--22800
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/fi4/bx/n/10 y = ru
nmed(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 22846--22850
[][][]\T1/fi4/bx/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey'
s end point rule and is called by de-fault from

Underfull \hbox (badness 1062) in paragraph at lines 22846--22850
\T1/fi4/bx/n/10 runmed(*, endrule = "median")\T1/ptm/m/n/10 . [][]\T1/fi4/bx/n/
10 smooth[][][] \T1/ptm/m/n/10 uses run-ning me-di-ans of 3 for its com-pound
[1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1597]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1598]
Underfull \hbox (badness 3514) in paragraph at lines 24904--24909
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1599]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1600] [1601] [1602]
Underfull \hbox (badness 2376) in paragraph at lines 25097--25100
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 , which is the value of the ex-pres-sion

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\T1/fi4/bx/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input)-exp(-exp(lKa)*i
nput)) / (exp(lKa)-exp(lKe))\T1/ptm/m/n/10 . 
[1603]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1604]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1605]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1606]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1607]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 x\T1/
ptm/m/n/10 . It is the value of the ex-pres-sion
[1608] [1609] [1610] [1611] [1612] [1613] [1614]
Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/fi4/bx/n/10 NULL\T1/ptm/m
/n/10 , the de-fault,
[1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625]
Underfull \hbox (badness 5431) in paragraph at lines 26463--26465
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1626] [1627] [1628]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1629] [1630] [1631] [1632] [1633] [1634]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1635] [1636]
Underfull \hbox (badness 10000) in paragraph at lines 27094--27097
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/fi4/bx/n/10 rt()\T1/ptm/m/n/10 , only for
[1637] [1638]
Underfull \hbox (badness 1616) in paragraph at lines 27267--27270
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1639]
Underfull \hbox (badness 4518) in paragraph at lines 27291--27294
[]\T1/ptm/m/n/10 For the \T1/fi4/bx/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-t
ion it must have a [][]\T1/fi4/bx/n/10 residuals[][][] \T1/ptm/m/n/10 method th
at ac-cepts
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650]
[1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1661] [1662] [1663] [1664]
Overfull \hbox (28.1622pt too wide) in paragraph at lines 28838--28841
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -pweibull(t, a, b, lower = FA
LSE, log = TRUE)
[1665] [1666] [1667] [1668]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1669] [1670]
Underfull \hbox (badness 5161) in paragraph at lines 29154--29156
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1671] [1672] [1673] [1674] [1675]
Underfull \hbox (badness 10000) in paragraph at lines 29510--29515
[]\T1/ptm/m/n/10 There is a \T1/fi4/bx/n/10 summary \T1/ptm/m/n/10 method for c
on-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/bx/n/10 table \T1/ptm/m/n/10 o
r

Underfull \hbox (badness 1303) in paragraph at lines 29510--29515
\T1/fi4/bx/n/10 xtabs(*, sparse=FALSE)\T1/ptm/m/n/10 , which gives ba-sic in-fo
r-ma-tion and per-forms a chi-squared test

Underfull \hbox (badness 1308) in paragraph at lines 29522--29525
[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/bx/n/10 sparse=FALSE\T1/ptm/m/n/10 ,
 a con-tin-gency ta-ble in ar-ray rep-re-sen-ta-tion of S3 class
[1676] [1677] [1678]) (./stats4-pkg.tex
Chapter 9.
[1679] [1680] [1681] [1682] [1683] [1684]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1685] [1686] [1687]
[1688]) (./tcltk-pkg.tex
Chapter 10.
[1689] [1690] [1691] [1692] [1693] [1694] [1695]
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Underfull \hbox (badness 1546) in paragraph at lines 644--651
[]\T1/fi4/bx/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-in
g any Tk or Tcl com-mand by sim-ply run-ning
[1698] [1699] [1700] [1701]
Underfull \vbox (badness 10000) has occurred while \output is active [1702]
[1703] [1704] [1705] [1706] [1707] [1708] [1709]) (./tools-pkg.tex [1710]
Chapter 11.

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[1711]
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\T1/fi4/bx/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatInProc
eedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatManual\T1/ptm/m/n/10 , \T1/fi4/bx
/n/10 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 formatMisc\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatPhdthesis\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 f
ormatTechreport \T1/ptm/m/n/10 and
[1712] [1713] [1714]
Underfull \hbox (badness 2080) in paragraph at lines 251--256
\T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph
a-bet-i-cally on the glyph

Underfull \hbox (badness 2644) in paragraph at lines 251--256
\T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data
 are in the file
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[1719] [1720] [1721]
Underfull \hbox (badness 1635) in paragraph at lines 666--668
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 814--816
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1724] [1725] [1726]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Overfull \hbox (9.55087pt too wide) in paragraph at lines 980--984
\T1/fi4/bx/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances
")\T1/ptm/m/n/10 .

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/fi4/bx/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1727] [1728] [1729] [1730] [1731]
Underfull \hbox (badness 5726) in paragraph at lines 1249--1254
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 reduce \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/bx/n/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1732] [1733] [1734] [1735] [1736]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Overfull \hbox (9.55087pt too wide) in paragraph at lines 1531--1536
\T1/fi4/bx/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances
")\T1/ptm/m/n/10 .
[1737] [1738] [1739] [1740]

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[]\T1/fi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul
d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ;
[1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761]
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3093--3098
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1762]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/fi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1763] [1764] [1765] [1766]) (./utils-pkg.tex
Chapter 12.
[1767]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1768] [1769]
Underfull \hbox (badness 1454) in paragraph at lines 198--201
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/fi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/fi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/fi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1770] [1771] [1772] [1773] [1774] [1775]
Underfull \hbox (badness 5847) in paragraph at lines 584--590
[]\T1/ptm/m/n/10 Argument \T1/fi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 584--590
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/fi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1776] [1777] [1778] [1779] [1780]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1786] [1787] [1788] [1789]
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[]\T1/ptm/m/n/10 None for \T1/fi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1790] [1791] [1792] [1793]
Underfull \hbox (badness 1661) in paragraph at lines 1704--1711
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/fi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/fi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/fi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/fi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1794] [1795] [1796] [1797] [1798] [1799]
Overfull \hbox (6.10922pt too wide) in paragraph at lines 2100--2103
[]\T1/ptm/m/n/10 files end-ing `\T1/fi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/fi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/fi4/m/sl/10 read.table[]
[][](..., header = TRUE, sep = ";")\T1/ptm/m/n/10 ,
[1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/fi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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\T1/fi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1808]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1809] [1810] [1811] [1812] [1813]
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[]\T1/ptm/m/n/10 logical or ex-pres-sion; if not \T1/fi4/m/sl/10 FALSE\T1/ptm/m
/n/10 , the ran-dom num-ber gen-er-a-tor state
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l.3428 ...mat Unordered and Ordered Lists}{format}
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                                                   [1821] [1822] [1823]
[1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1833] [1834]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1835] [1836]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1837] [1838]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1839]
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\T1/ptm/m/n/10 can be source archives or bi-nary pack-age archive files (as cre
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[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] [24] [25] [26] [27]) [28] (./base-pkg.tex
Chapter 1.
[1]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/fi4/bx/n/10 x \T
1/ptm/m/n/10 such that \T1/fi4/bx/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/fi4/bx/n/10 double.base ^ double.neg.ulp.digits \T
1/ptm/m/n/10 if

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\T1/fi4/bx/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/fi4/bx/n/10 double.round
ing \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[2] [3]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/fi4/bx/n
/10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[4] [5] [6] [7]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/bx/n/10 insertions\T1/ptm/m/n/10 ',
[8] [9] [10] [11] [12] [13] [14] [15] [16]
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[]\T1/ptm/m/n/10 If the calls to \T1/fi4/bx/n/10 FUN \T1/ptm/m/n/10 re-turn vec
-tors of dif-fer-ent lengths, \T1/fi4/bx/n/10 apply \T1/ptm/m/n/10 re-turns a l
ist of length
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[]\T1/fi4/bx/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/fi4/bx/n/10 x mod y \T1/ptm
/m/n/10 and \T1/fi4/bx/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion
. It is guar-an-teed that

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\T1/fi4/bx/n/10 x == (x %% y) + y * (   x %/% y ) \T1/ptm/m/n/10 (up to round-i
ng er-ror) un-less \T1/fi4/bx/n/10 y == 0 \T1/ptm/m/n/10 where the
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[52] [53] [54] [55] [56] [57] [58] [59]
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[]\T1/ptm/m/n/10 Are the \T1/fi4/bx/n/10 R.app \T1/ptm/m/n/10 GUI com-po-nents 
and the [][]\T1/fi4/bx/n/10 quartz[][][] \T1/ptm/m/n/10 func-tion op-er-a-tiona
l?

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\T1/ptm/m/n/10 Only on some Mac OS X builds. Note that this is dis-tinct from
[60]
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[]\T1/ptm/m/n/10 is there sup-port the [][]\T1/fi4/bx/n/10 svg[][][]\T1/ptm/m/n
/10 , [][]\T1/fi4/bx/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/fi4/bx/n/1
0 cairo_ps[][][] \T1/ptm/m/n/10 de-vices, and for
[61] [62] [63]
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\T1/fi4/bx/n/10 deparse.level = 0 \T1/ptm/m/n/10 con-structs no la-bels; the de
-fault,

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\T1/fi4/bx/n/10 deparse.level = 1 or 2 \T1/ptm/m/n/10 con-structs la-bels from 
the ar-gu-ment names,
[64] [65] [66] [67] [68]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[84] [85] [86] [87] [88] [89] [90] [91]
Underfull \hbox (badness 10000) in paragraph at lines 5797--5800
[]\T1/ptm/m/n/10 A note on `\T1/fi4/bx/n/10 file://\T1/ptm/m/n/10 ' URLs. The m
ost gen-eral form (from RFC1738) is
[92] [93] [94]
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[]\T1/fi4/bx/n/10 file \T1/ptm/m/n/10 can be used with \T1/fi4/bx/n/10 descript
ion = "clipboard" \T1/ptm/m/n/10 in mode \T1/fi4/bx/n/10 "r" \T1/ptm/m/n/10 onl
y. This reads

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\T1/ptm/m/n/10 the X11 pri-mary se-lec-tion (see [][]$\T1/fi4/bx/n/10 http : / 
/ standards . freedesktop . org / clipboards-[]spec /
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[106]
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[][][]\T1/fi4/bx/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-
cord-ing to a group fac-tor; [][]\T1/fi4/bx/n/10 factor[][][]\T1/ptm/m/n/10 , [
][]\T1/fi4/bx/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 table[][]
[]\T1/ptm/m/n/10 ,
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[]\T1/fi4/bx/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments t
o a data frame by call-ing
[111]
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[][][]\T1/fi4/bx/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 plot.data.fra
me[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 print.data.frame[][][]\T1/ptm/m/n/
10 , [][]\T1/fi4/bx/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 na
mes[][][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/fi4/bx/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods
, [][]\T1/fi4/bx/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m
/it/10 Group \T1/ptm/m/n/10 meth-ods for
[112] [113] [114] [115] [116] [117]
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\T1/fi4/bx/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") \T1/ptm/m/
n/10 may give \T1/fi4/bx/n/10 NA\T1/ptm/m/n/10 , and hence

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\T1/fi4/bx/n/10 as.POSIXct("1969-12-31 23:59:59",  tz = "UTC") \T1/ptm/m/n/10 w
ill give \T1/fi4/bx/n/10 "1969-12-31 23:59:00"\T1/ptm/m/n/10 .
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[130] [131] [132] [133] [134]
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/fi4/bx/n/10 difftime \T1/ptm/m/n/10 with
[135] [136] [137] [138] [139] [140] [141]
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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / 
wiki / IEEE _
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[160] [161] [162] [163]
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

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\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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[]\T1/ptm/m/n/10 Both \T1/fi4/bx/n/10 $ \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 [[ \
T1/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are
 al-lowed

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\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[184] [185]
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[186]
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[][][]\T1/fi4/bx/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-b
olic links, [][]\T1/fi4/bx/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 file.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.files[][][]\T1/ptm/
m/n/10 , and
[187]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/b
x/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 with
[188]
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\T1/ptm/m/n/10 ing spe-cial pager names be-ing in-ter-cepted by lower-level cod
e (such as \T1/fi4/bx/n/10 "internal" \T1/ptm/m/n/10 and
[189]
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/bx/n/10 file.copy \T1/ptm/m/n/10 and
[190]
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[][][]\T1/fi4/bx/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.
access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.path[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/bx/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.
files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 unlink[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 basename[][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wik
i /
[191] [192] [193] [194]
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[]\T1/ptm/m/n/10 Find the in-dices of \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 in \T1/f
i4/bx/n/10 vec\T1/ptm/m/n/10 , where \T1/fi4/bx/n/10 vec \T1/ptm/m/n/10 must be
 sorted (non-decreasingly); i.e., if

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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/bx/n/10 complex[][][] \T1/ptm/m/n/10 only for
[206]
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[]\T1/ptm/m/n/10 If you set \T1/fi4/bx/n/10 format \T1/ptm/m/n/10 it over-rides
 the set-ting of \T1/fi4/bx/n/10 mode\T1/ptm/m/n/10 , so

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[]\T1/fi4/bx/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-
bers on the dec-i-mal point, so
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[219]
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[][]\T1/fi4/bx/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter 
the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/bx/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 CallRoutine\T1/ptm/m/n/
10 ,
[223] [224] [225] [226] [227]
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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[233]
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[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/fi4/bx/n/10 htt
p : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[234] [235] [236] [237] [238] [239] [240]
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 Sometimes it is bet-ter to use a con-struc-tion such as \T1/fi
4/bx/n/10 (tmp <- yes; tmp[!test] <- no[!test]; tmp)\T1/ptm/m/n/10 ,
[248] [249] [250]
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/bx/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[251]
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[][][]\T1/fi4/bx/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.complex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.double[][][]\T1/ptm/m/n/1
0 , [][]\T1/fi4/bx/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.logical[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.raw[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/bx/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[]\T1/fi4/bx/n/10 sapply \T1/ptm/m/n/10 is a user-friendly ver-sion and wrap-pe
r of \T1/fi4/bx/n/10 lapply \T1/ptm/m/n/10 by de-fault re-turn-ing a vec-tor,
[269] [270] [271] [272] [273] [274] [275]
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[]\T1/ptm/m/n/10 By de-fault \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, a
nd \T1/fi4/bx/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 17728--17732
\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/bx/
n/10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `
\T1/fi4/bx/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/bx/n/10 /library\T1/ptm/m/
n/10 '
[276] [277] [278]
Underfull \hbox (badness 1014) in paragraph at lines 17893--17898
[]\T1/ptm/m/n/10 Normally \T1/fi4/bx/n/10 library \T1/ptm/m/n/10 re-turns (in-v
is-i-bly) the list of at-tached pack-ages, but \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n
/10 or \T1/fi4/bx/n/10 FALSE \T1/ptm/m/n/10 if
[279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289]
Underfull \hbox (badness 1264) in paragraph at lines 18584--18589
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 4954) in paragraph at lines 18996--19002
[]\T1/fi4/bx/n/10 as.logical \T1/ptm/m/n/10 at-tempts to co-erce its ar-gu-ment
 to be of log-i-cal type. For [][]\T1/fi4/bx/n/10 factor[][][]\T1/ptm/m/n/10 s,


Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 this uses the [][]\T1/fi4/bx/n/10 levels[][][] \T1/ptm/m/n/10 (l
a-bels). Like [][]\T1/fi4/bx/n/10 as.vector[][][] \T1/ptm/m/n/10 it strips at-t
ributes in-clud-ing

Underfull \hbox (badness 10000) in paragraph at lines 18996--19002
\T1/ptm/m/n/10 names. Char-ac-ter strings \T1/fi4/bx/n/10 c("T", "TRUE", "True"
, "true") \T1/ptm/m/n/10 are re-garded as true,
[296] [297] [298] [299]
Underfull \hbox (badness 10000) in paragraph at lines 19241--19243
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/bx/n/10 make.unique \T1/ptm/m/
n/10 has the prop-erty that
[300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311]
[312] [313] [314] [315]
Underfull \hbox (badness 1655) in paragraph at lines 20219--20225
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[316] [317]
Underfull \hbox (badness 1484) in paragraph at lines 20368--20376
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[318] [319] [320] [321]
Underfull \hbox (badness 2790) in paragraph at lines 20622--20625
[]\T1/fi4/bx/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-
sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 20622--20625
\T1/fi4/bx/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still 
mes-sages, so can be sup-pressed by
[322] [323] [324] [325] [326] [327] [328]
Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 21059--21062
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340]
[341] [342] [343] [344]
Underfull \hbox (badness 1199) in paragraph at lines 22082--22088
[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 is.numeric \T1/ptm/m/n
/10 re-turns \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mo
de[][][] \T1/fi4/bx/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 22082--22088
\T1/ptm/m/n/10 ([][]type[][][] \T1/fi4/bx/n/10 "double" \T1/ptm/m/n/10 or type 
\T1/fi4/bx/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/fi4/bx/n/1
0 FALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[345] [346] [347] [348] [349] [350] [351]
Underfull \hbox (badness 1038) in paragraph at lines 22610--22619
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 10000) in paragraph at lines 22610--22619
\T1/fi4/bx/n/10 c("datasets", "utils", "grDevices", "graphics", "stats",       
 "methods")\T1/ptm/m/n/10 .
[352]
Underfull \hbox (badness 6220) in paragraph at lines 22634--22636
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


Underfull \hbox (badness 10000) in paragraph at lines 22696--22705
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/b
x/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2600) in paragraph at lines 22696--22705
\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx/n/10 /bin/pager\T1/p
tm/m/n/10 ', which se-lects a pager via the \T1/fi4/bx/n/10 PAGER \T1/ptm/m/n/1
0 en-vi-ron-ment vari-able

Underfull \hbox (badness 2142) in paragraph at lines 22706--22712
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/bx/n/10 postsc
ript[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
[353]
Underfull \hbox (badness 1968) in paragraph at lines 22719--22724
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/bx/n/10 postscript[][][] \T1/
ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 22729--22738
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[354] [355] [356]
Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/bx
/n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/bx/n/10 "http://www.bioconductor.org"
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 22970--22976
\T1/ptm/m/n/10 ror `\T1/fi4/bx/n/10 "http://bioconductor.statistik.tu-dortmund.
de"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 22982--22985
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/bx/n/10 create.post[]
[][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/m/n/
10 and

Underfull \hbox (badness 2689) in paragraph at lines 23003--23005
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 23031--23034
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/bx/n/10 create.po
st[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/
m/n/10 and

Underfull \hbox (badness 2680) in paragraph at lines 23041--23047
\T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dow
s uses \T1/fi4/bx/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/bx/n/10 "mac.binar
y" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/fi4/bx/n/10 upd
ate.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/bx/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-
i-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 23049--23056
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 10000) in paragraph at lines 23049--23056
\T1/fi4/bx/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.c
ran";
[357] [358] [359] [360] [361]
Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/fi4/bx/n/10 X \T1/ptm/m/
n/10 and \T1/fi4/bx/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/fi4/bx/n/10 A \T1/p
tm/m/n/10 with di-men-

Underfull \hbox (badness 10000) in paragraph at lines 23331--23335
\T1/ptm/m/n/10 sion \T1/fi4/bx/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e
-ment \T1/fi4/bx/n/10 A[c(arrayindex.x, arrayindex.y)]
[362] [363] [364] [365]
Underfull \hbox (badness 1748) in paragraph at lines 23608--23612
\T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor
s, or very de-sir-able, e.g. in
[366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 2726) in paragraph at lines 24096--24099
[]\T1/ptm/m/n/10 character string (or \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 ) in-d
i-cat-ing [][]\T1/fi4/bx/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-pu
t, see
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383] [384] [385]
[386]
Underfull \hbox (badness 1052) in paragraph at lines 24872--24877
[]\T1/fi4/bx/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/
10 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vid
ed
[387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1097) in paragraph at lines 25248--25256
[]\T1/ptm/m/n/10 The seed, \T1/fi4/bx/n/10 .Random.seed[-1] == r[1:3] \T1/ptm/m
/n/10 is an in-te-ger vec-tor of length
[393] [394] [395] [396]
Underfull \hbox (badness 1533) in paragraph at lines 25562--25565
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407] [408]
[409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420]
[421] [422] [423]
Underfull \hbox (badness 6188) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/bx/n/10 http : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
[424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435]
[436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 10000) in paragraph at lines 28396--28400
[]\T1/fi4/bx/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my 
cur-rent workspace', i.e.,
[442] [443] [444]
Underfull \hbox (badness 2302) in paragraph at lines 28602--28609
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/bx/n/10 center=TRUE\T1/ptm/m/n/10 ,
 this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28602--28609
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[445] [446]
Underfull \hbox (badness 2261) in paragraph at lines 28755--28760
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 strip.white \T1/ptm/m/n/10 is of length 1, 
it ap-plies to all fields; oth-er-wise, if
[447]
Underfull \hbox (badness 10000) in paragraph at lines 28782--28788
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters

Underfull \hbox (badness 4001) in paragraph at lines 28782--28788
\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 \a, \b, \f, \n, \r, \t, \v\T1/ptm/m/n/10 ' and 
oc-tal and hex-adec-i-mal rep-re-sen-ta-
[448]
Underfull \hbox (badness 10000) in paragraph at lines 28855--28860
[]\T1/ptm/m/n/10 Note that since \T1/fi4/bx/n/10 sep \T1/ptm/m/n/10 is a sep-a-
ra-tor and not a ter-mi-na-tor, read-ing a file by

Underfull \hbox (badness 1946) in paragraph at lines 28855--28860
\T1/fi4/bx/n/10 scan("foo", sep="\n", blank.lines.skip=FALSE) \T1/ptm/m/n/10 wi
ll give an empty fi-nal line if the
[449] [450] [451] [452] [453]
Underfull \hbox (badness 6188) in paragraph at lines 29189--29192
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence \T1/fi4/bx
/n/10 1, 2, ...,    length(along.with)\T1/ptm/m/n/10 .
[454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465]
[466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477]
[478]
Underfull \vbox (badness 3803) has occurred while \output is active [479]
[480] [481] [482] [483] [484]
Underfull \vbox (badness 3803) has occurred while \output is active [485]
[486] [487] [488]
Underfull \hbox (badness 5008) in paragraph at lines 31395--31407
[]\T1/ptm/m/n/10 The \T1/fi4/bx/n/10 srcref \T1/ptm/m/n/10 func-tion pro-duces 
an ob-ject of class \T1/fi4/bx/n/10 srcref\T1/ptm/m/n/10 , which de-scribes a r
ange

Underfull \hbox (badness 6141) in paragraph at lines 31395--31407
\T1/ptm/m/n/10 of char-ac-ters in a    \T1/fi4/bx/n/10 srcfile\T1/ptm/m/n/10 . 
The \T1/fi4/bx/n/10 lloc \T1/ptm/m/n/10 value gives the fol-low-ing val-ues: \T
1/fi4/bx/n/10 c

Overfull \hbox (112.28088pt too wide) in paragraph at lines 31395--31407
\T1/fi4/bx/n/10 (first_line, first_byte, last_line, last_byte, first_column,  l
ast_column, first_parsed, last_parsed)\T1/ptm/m/n/10 .
[489] [490]
Underfull \hbox (badness 1072) in paragraph at lines 31552--31556
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31557--31561
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/bx/n/10 --vanilla\T1/ptm/m/n
/10 ' im-plies `\T1/fi4/bx/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/bx/n/1
0 --no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 31585--31591
\T1/ptm/m/n/10 and `\T1/fi4/bx/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked fo
r first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31594--31601
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx
/n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[491] [492] [493] [494]
Overfull \hbox (5.98903pt too wide) in paragraph at lines 31806--31809
[]\T1/fi4/bx/n/10 stopifnot(A, B) \T1/ptm/m/n/10 is con-cep-tu-ally equiv-a-len
t to \T1/fi4/bx/n/10 { if(any(is.na(A)) || !all(A)) stop(...) ;
[495]
Underfull \hbox (badness 10000) in paragraph at lines 31870--31876
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/bx/n/10 for
mat \T1/ptm/m/n/10 meth-ods is
[496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507]
[508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519]
Underfull \hbox (badness 4416) in paragraph at lines 33414--33416
[]\T1/ptm/m/n/10 Argument \T1/fi4/bx/n/10 names \T1/ptm/m/n/10 was in-tro-duced
 in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of

[520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531]
Underfull \hbox (badness 1472) in paragraph at lines 34102--34105
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , func-tions ke
ep their source in-clud-ing com-ments, see
[532] [533] [534] [535] [536] [537] [538] [539]
Underfull \hbox (badness 4217) in paragraph at lines 34611--34614
[]\T1/ptm/m/n/10 Because of the way it is im-ple-mented, on a Unix-alike \T1/fi
4/bx/n/10 stderr =     TRUE \T1/ptm/m/n/10 im-plies
[540] [541]
Underfull \hbox (badness 2671) in paragraph at lines 34746--34749
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/fi4/bx/n/10 ...\T1/p
tm/m/n/10 . If set to \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 35139--35142
[][][]\T1/fi4/bx/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$http : / / developer . r-[]project . org /
[548] [549]
Underfull \hbox (badness 10000) in paragraph at lines 35260--35264
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 getTaskCallbackNa
mes[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[550]
Underfull \hbox (badness 10000) in paragraph at lines 35322--35326
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 taskCallbackManag
er[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[551] [552] [553] [554] [555] [556] [557] [558] [559] [560]
Underfull \hbox (badness 10000) in paragraph at lines 35939--35941
[]\T1/ptm/m/n/10 Using [][]\T1/fi4/bx/n/10 setBreakpoint[][][] \T1/ptm/m/n/10 (
from pack-age \T1/ptm/b/n/10 utils\T1/ptm/m/n/10 ) may be an al-ter-na-tive, ca
ll-ing
[561] [562] [563] [564] [565] [566] [567]
Underfull \hbox (badness 1990) in paragraph at lines 36440--36448
[]\T1/fi4/bx/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any 
er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36440--36448
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/bx/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[568] [569] [570] [571] [572]
Underfull \hbox (badness 1515) in paragraph at lines 36706--36711
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[573] [574] [575]
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[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/fi4/bx/n/10 UseMethod("fun") \T1
/ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[576] [577] [578] [579] [580] [581] [582] [583] [584]
Underfull \hbox (badness 3668) in paragraph at lines 37494--37496
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[585]
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/bx/n/10 options[][][]("wa
rn") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[586] [587] [588]
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[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/fi4/
bx/n/10 x \T1/ptm/m/n/10 is an [][]\T1/fi4/bx/n/10 array[][][] \T1/ptm/m/n/10 (
has a [][]\T1/fi4/bx/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is

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\T1/fi4/bx/n/10 arrayInd(which(x), dim(x), dimnames(x))\T1/ptm/m/n/10 , namely 
a ma-trix whose rows each are the
[589] [590] [591] [592] [593] [594] [595] [596] [597]
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[]\T1/fi4/bx/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rent
ly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[598]
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[]\T1/fi4/bx/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dar
d' reg-exps, in-clud-ing el-e-ments named
[599]) (./datasets-pkg.tex [600]
Chapter 2.
[601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 691--693
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[613] [614]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[615] [616] [617] [618] [619]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[620] [621] [622] [623] [624] [625] [626] [627] [628]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[629] [630] [631] [632] [633] [634] [635] [636]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[637] [638] [639] [640] [641] [642] [643] [644]
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[645]
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[648] [649] [650] [651] [652] [653] [654] [655]
Overfull \vbox (20.49605pt too high) has occurred while \output is active
[656] [657] [658] [659] [660] [661]
Overfull \hbox (22.36993pt too wide) in paragraph at lines 3561--3563
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData",    "groupedData", "data.frame")
[662] [663] [664] [665]
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[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/bx/n/10 http : / / www . sonic . net /
[666]
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[668] [669] [670]
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Underfull \vbox (badness 10000) has occurred while \output is active [672]
[673] [674] [675] [676] [677] [678] [679]) (./grDevices-pkg.tex [680]
Chapter 3.
[681] [682] [683] [684]
Underfull \hbox (badness 1484) in paragraph at lines 274--278
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/fi4/bx/n/10 c(mi, ma, n.)\T1/
ptm/m/n/10 , with iden-ti-cal mean-ing to
[685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696]
[697]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[698] [699] [700]
Underfull \hbox (badness 1852) in paragraph at lines 1237--1240
[]\T1/fi4/bx/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col
-ors that will be used in plot-ting, call-ing
[701] [702] [703]
Underfull \hbox (badness 1490) in paragraph at lines 1439--1444
\T1/ptm/m/n/10 by [][]\T1/fi4/bx/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]
\T1/fi4/bx/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/fi4/bx
/n/10 "no"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "yes" \T1/ptm/m/n/10 and
[704]
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[]\T1/fi4/bx/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture
, oth-er-wise a ma-trix of color names (for
[705]
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[]\T1/ptm/m/n/10 logical; if \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , the func-tion
 also re-turns \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 when

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[][]\T1/fi4/bx/n/10 .Device[][][] == "null device" \T1/ptm/m/n/10 and [][]\T1/f
i4/bx/n/10 getOption[][][]("device") \T1/ptm/m/n/10 is among the
[706] [707] [708] [709]
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\T1/fi4/bx/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pgnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "ppmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pkmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiffg32d"\T1/ptm/m/n/
10 , \T1/fi4/bx/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tifflzw"\T1/ptm/
m/n/10 , \T1/fi4/bx/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff12nc"\
T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "psgray"\T1
/ptm/m/n/10 , \T1/fi4/bx/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bit"\T1/
ptm/m/n/10 , \T1/fi4/bx/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bitcmyk"
\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngmono"\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngalpha"\T1/ptm/m/n
/10 , \T1/fi4/bx/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png256"\T1/ptm/m
/n/10 , \T1/fi4/bx/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png48"\T1/ptm
/m/n/10 , \T1/fi4/bx/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "jpeggray"\T1/
ptm/m/n/10 ,
[710] [711]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[712] [713]
Underfull \hbox (badness 6758) in paragraph at lines 2105--2108
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[714] [715] [716]
Overfull \hbox (80.83pt too wide) in paragraph at lines 2249--2251
[]\T1/ptm/m/n/10 Navigation keys, passed as one of \T1/fi4/bx/n/10 "Left", "Up"
, "Right", "Down",     "PgUp", "PgDn", "End", "Home" 
[717] [718] [719] [720] [721]
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[722] [723] [724] [725] [726] [727] [728]
Underfull \hbox (badness 1755) in paragraph at lines 3040--3042
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/fi4/bx/n/10 nr, nc \T1/ptm/
m/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[729] [730] [731] [732] [733]
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[]\T1/ptm/m/n/10 For use with \T1/fi4/bx/n/10 onefile = FALSE \T1/ptm/m/n/10 gi
ve a C in-te-ger for-mat such as

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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/fi4/bx/n/10 /Title\T1/ptm/m
/n/10 ' field in the file. De-faults to
[734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745]
[746] [747] [748] [749] [750]
Underfull \hbox (badness 1789) in paragraph at lines 4400--4402
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/fi4/bx/n/10 Title \T1/ptm/m/
n/10 com-ment in the file. De-faults to

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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[751]
Underfull \hbox (badness 2671) in paragraph at lines 4477--4485
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/fi4/
bx/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi
4/bx/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \
T1/fi4/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T
1/ptm/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4534--4543
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
[752]
Underfull \hbox (badness 1755) in paragraph at lines 4544--4546
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[753]
Underfull \hbox (badness 1057) in paragraph at lines 4655--4660
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/fi4/bx/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[754]
Underfull \hbox (badness 7344) in paragraph at lines 4715--4717
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[755] [756]
Underfull \hbox (badness 2035) in paragraph at lines 4839--4848
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4
/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T1/ptm/
m/n/10 ,

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\T1/fi4/bx/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Palatin
o" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/bx/n/10 "
URWGothic"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[757]
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[758]
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\T1/ptm/m/n/10 can be found at [][]$\T1/fi4/bx/n/10 ftp : / / ftp . gnu . org /
 pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/bx/n/10 ftp : / / ft
p . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[759] [760]
Underfull \hbox (badness 1546) in paragraph at lines 5045--5053
[]\T1/ptm/m/n/10 arguments \T1/fi4/bx/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 family\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 title\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 fonts\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 bg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 width\T
1/ptm/m/n/10 ,
[761]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[762] [763] [764] [765] [766] [767]
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[]\T1/fi4/bx/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (re
d/green/blue) into HSV space
[768] [769]
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[771] [772] [773] [774]
Underfull \hbox (badness 1189) in paragraph at lines 5913--5915
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[775] [776]
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[]\T1/fi4/bx/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK
 lan-guages and
[777] [778] [779] [780]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/bx/n/
10 "AvantGarde"\T1/ptm/m/n/10 ,
[781] [782] [783]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/bx/n/10 
number[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[784] [785] [786]) (./graphics-pkg.tex
Chapter 4.
[787] [788] [789]
Underfull \hbox (badness 2856) in paragraph at lines 177--180
[]\T1/ptm/m/n/10 For each \T1/fi4/bx/n/10 i\T1/ptm/m/n/10 , an ar-row is drawn 
be-tween the point \T1/fi4/bx/n/10 (x0[i],    y0[i]) \T1/ptm/m/n/10 and the poi
nt
[790] [791] [792] [793]
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[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 at = NULL\T1/ptm/m/n/10 , pretty tick mar
k lo-ca-tions are com-puted in-ter-nally (the same way
[794] [795] [796] [797]
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[]\T1/fi4/bx/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/
ptm/m/n/10 in-ter-face to the C func-tion \T1/fi4/bx/n/10 CreateAtVector() \T1/
ptm/m/n/10 in
[798] [799] [800]
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[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , the lines whi
ch di-vide ad-ja-cent (non-stacked!) bars
[801] [802] [803] [804] [805] [806] [807]
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[][][]\T1/fi4/bx/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works
 nowa-days with data.frames; [][]\T1/fi4/bx/n/10 boxplot.formula[][][]\T1/ptm/m
/n/10 ,
[808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819]
[820] [821] [822] [823] [824]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[837] [838] [839] [840] [841] [842]
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 []       \T1/fi4/bx/n/10 adj = c(0, 0.5), text.width = NULL, text.col = par("c
ol"), text.font = NULL,[] 
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[848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858]
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
[859] [860] [861] [862] [863]
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/fi4/bx/
n/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/fi4/bx/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 par("cin")/par("pi
n") \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that

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\T1/fi4/bx/n/10 c([][]strwidth[][][](ch), [][]strheight[][][](ch)) \T1/ptm/m/n/
10 for a given string \T1/fi4/bx/n/10 ch \T1/ptm/m/n/10 is usu-ally much more p
re-
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/fi4/bx/n/10 lty = 
2:6\T1/ptm/m/n/10 ) cor-re-spond to
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[]\T1/ptm/m/n/10 a ex-pan-sion fac-tor ap-plied to the \T1/fi4/bx/n/10 z \T1/pt
m/m/n/10 co-or-di-nates. Of-ten used with
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/fi4/bx/n/10 i\T1/ptm/m/n/10 , a line seg-ment is 
drawn be-tween the point \T1/fi4/bx/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the 
point
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[]\T1/ptm/m/n/10 For \T1/fi4/bx/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly
 en-larged) usual plot-ting sym-bol (\T1/fi4/bx/n/10 pch\T1/ptm/m/n/10 ) is dra
wn. For
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/fi4/bx/n/10 pa
r("font.sub") \T1/ptm/m/n/10 and color
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l.8575 \HeaderA{units}{Graphical Units}{units}
                                               [927] [928] [929] [930] [931])
(./grid-pkg.tex [932]
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/bx/n/10 preDrawDetails \T1/ptm/m/n/10 and \T
1/fi4/bx/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-t
ion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/bx/n/10 pushViewport[][][]\T1/ptm/
m/n/10 , [][]\T1/fi4/bx/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n
/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 seekViewport[][][]\T
1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4
/bx/n/10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
 de-scrib-ing ar-rows), but only
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/fi4/bx/n/10 unit(rep(1, 3), c("npc", "strwidth", "inches"),        data=lis
t(NULL, "my string", NULL))\T1/ptm/m/n/10 . 
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\T1/ptm/m/n/10 pos-si-ble to add and sub-tract unit ob-jects (e.g., \T1/fi4/bx/
n/10 unit(1, "npc") - unit(1, "inches")\T1/ptm/m/n/10 ),

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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1036] [1037] [1038] [1039]) (./methods-pkg.tex [1040]
Chapter 6.
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "className" \T1/ptm/m/n/10 ex-tends 
\T1/fi4/bx/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/bx/n/10 "pack
age"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/10 
can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/
10 it calls \T1/fi4/bx/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/bx/n/10 setGeneric[][][] \T1/
ptm/m/n/10 and [][]\T1/fi4/bx/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate
 ob-jects of class
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[]\T1/ptm/m/n/10 In \T1/fi4/bx/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/fi4/bx/n
/10 TRUE\T1/ptm/m/n/10 , the \T1/fi4/bx/n/10 package \T1/ptm/m/n/10 slot of the
 re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/bx/n/10 removeGeneric \T1/ptm/m/n/10 re-m
oves the func-tion it-self; \T1/fi4/bx/n/10 removeMethods \T1/ptm/m/n/10 re-sto
res the
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[]\T1/ptm/m/n/10 The \T1/fi4/bx/n/10 initialize \T1/ptm/m/n/10 method for these
 classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "SealedMethodDefinition" \T1/ptm/m/n
/10 is cre-ated by a call to [][]\T1/fi4/bx/n/10 setMethod[][][] \T1/ptm/m/n/10
 with ar-gu-ment
[1105]
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/bx/n/10 MethodsList[][][] \T1/ptm/m/n/10 for
 the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/fi4/bx/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\
T1/fi4/bx/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/fi4/bx/n/10 "track" \T1/ptm/m/n/10 for 
\T1/fi4/bx/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other me
th-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/fi4/bx/n/10 "PossibleMethod" \T1/ptm/m/n/1
0 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/bx/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 $initialize() \T1/ptm/
m/n/10 is equiv-a-lent to in-vok-ing the method
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                                                 [1137]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1138] [1139] [1140]
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[]\T1/ptm/m/n/10 for \T1/fi4/bx/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only,
 a [][]\T1/fi4/bx/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-c
ally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/bx/n/10 http : / / stat . stanford . edu / ~jmc4 /
[1174]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1175] [1176] [1177] [1178]) (./splines-pkg.tex
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/bx/n/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189]
[1190] [1191] [1192]) (./stats-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/bx/n/10 lm
 \T1/ptm/m/n/10 or \T1/fi4/bx/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/fi4/bx/n/10 c("aov", "lm") \T1/ptm/m/n
/10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 y \T1/ptm/m/n/10 i
s given by
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[]\T1/fi4/bx/n/10 var \T1/ptm/m/n/10 is just an-other in-ter-face to \T1/fi4/bx
/n/10 cov\T1/ptm/m/n/10 , where \T1/fi4/bx/n/10 na.rm \T1/ptm/m/n/10 is used to
 de-ter-mine the de-fault for

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\T1/fi4/bx/n/10 use \T1/ptm/m/n/10 when that is un-spec-i-fied. If \T1/fi4/bx/n
/10 na.rm \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n/10 then the com-pl
ete ob-ser-va-tions (rows)

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\T1/ptm/m/n/10 are used (\T1/fi4/bx/n/10 use = "na.or.complete"\T1/ptm/m/n/10 )
 to com-pute the vari-ance. Oth-er-wise, by de-fault
[1277]
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\T1/ptm/m/n/10 For \T1/fi4/bx/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method i
s un-usual but avail-able for the sake of com-plete-
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1280]
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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 then \T1/fi4/bx/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the s
ame graph struc-ture as \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 and for each node,
[1288] [1289] [1290] [1291]
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/bx/n/10 "hclust" \T1/ptm/m/n/10 can b
e con-verted to class \T1/fi4/bx/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method


Underfull \hbox (badness 10000) in paragraph at lines 6151--6153
[]\T1/fi4/bx/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gr
am \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1292] [1293] [1294] [1295] [1296]
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[1298] [1299] [1300] [1301] [1302] [1303] [1304]
Underfull \hbox (badness 10000) in paragraph at lines 6950--6953
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/bx/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1305] [1306]
Underfull \hbox (badness 10000) in paragraph at lines 7087--7090
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/bx/n/10 h
ttp : / / cran . r-[]project . org / web / views /
[1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317]
[1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325]
Underfull \vbox (badness 3803) has occurred while \output is active [1326]
[1327] [1328] [1329]
Underfull \hbox (badness 2626) in paragraph at lines 8508--8511
[]\T1/ptm/m/n/10 Either \T1/fi4/bx/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4
/bx/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1330] [1331]
Underfull \hbox (badness 2503) in paragraph at lines 8608--8612
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1332] [1333] [1334] [1335] [1336]
Overfull \hbox (11.88992pt too wide) in paragraph at lines 8942--8944
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Fligner-Killeen test o
f homogeneity of variances"\T1/ptm/m/n/10 . 
[1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345]
Overfull \hbox (15.6622pt too wide) in paragraph at lines 9555--9557
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -pgamma(t, ..., lower = FALSE
, log = TRUE)\T1/ptm/m/n/10 . 
[1346] [1347] [1348] [1349] [1350]
Underfull \hbox (badness 4518) in paragraph at lines 9839--9844
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2142) in paragraph at lines 10180--10183
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 10199--10202
[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 trace \T1/ptm/m/n/10 is true, calls to []
[]\T1/fi4/bx/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS i
t-er-a-tion. Hence,
[1356]
Underfull \hbox (badness 1708) in paragraph at lines 10261--10264
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1357] [1358] [1359] [1360] [1361]
Underfull \hbox (badness 1694) in paragraph at lines 10625--10628
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1362]
Underfull \hbox (badness 1867) in paragraph at lines 10644--10653
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1363] [1364] [1365] [1366] [1367] [1368] [1369]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.11083 \aliasA{hat}{influence.measures}{hat}
                                              [1370] [1371]
Underfull \hbox (badness 1484) in paragraph at lines 11207--11209
[]\T1/ptm/m/n/10 The func-tion \T1/fi4/bx/n/10 hat() \T1/ptm/m/n/10 ex-ists mai
nly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
Underfull \hbox (badness 4441) in paragraph at lines 11753--11755
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
[1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391]
[1392] [1393] [1394] [1395] [1396]
Underfull \hbox (badness 4518) in paragraph at lines 12700--12705
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406]
Underfull \hbox (badness 4518) in paragraph at lines 13318--13323
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414]
Overfull \hbox (5.6622pt too wide) in paragraph at lines 13863--13865
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -plnorm(t, r, lower = FALSE, 
log = TRUE)\T1/ptm/m/n/10 . 
[1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 2503) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1426] [1427]
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[1429] [1430] [1431] [1432] [1433] [1434]
Underfull \hbox (badness 3009) in paragraph at lines 14985--14991
[]\T1/fi4/bx/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 model.respons
e \T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/bx/n/10 model.extract(, "offset") 
\T1/ptm/m/n/10 and
[1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445]
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456]
[1457] [1458] [1459] [1460] [1461]
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[1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474]
[1475]
Underfull \hbox (badness 1377) in paragraph at lines 17468--17473
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 17473--17476
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 17486--17490
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 2080) in paragraph at lines 17486--17490
\T1/ptm/m/n/10 the value by a fac-tor of \T1/fi4/bx/n/10 reltol * (abs(val) + r
eltol) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 17494--17498
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/bx/n/10 "BFGS"\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "SANN
" \T1/ptm/m/n/10 meth-ods if
[1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485]
Underfull \hbox (badness 1337) in paragraph at lines 18103--18106
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496]
[1497] [1498]
Underfull \hbox (badness 5563) in paragraph at lines 18830--18832
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , add to al-rea
dy ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 18833--18836
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1499] [1500] [1501] [1502] [1503]
Underfull \hbox (badness 1675) in paragraph at lines 19120--19123
[]\T1/ptm/m/n/10 Setting \T1/fi4/bx/n/10 lower.tail = FALSE \T1/ptm/m/n/10 al-l
ows to get much more pre-cise re-sults when the de-fault,
[1504]
Underfull \hbox (badness 2503) in paragraph at lines 19197--19200
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1505]
Underfull \hbox (badness 10000) in paragraph at lines 19224--19226
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Exact Poisson test" \T
1/ptm/m/n/10 or
[1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
[1517] [1518] [1519] [1520]
Underfull \hbox (badness 10000) in paragraph at lines 20189--20195
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/bx/n/10 predict.ar[]
[][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531]
[1532] [1533] [1534] [1535] [1536] [1537]
Underfull \hbox (badness 2111) in paragraph at lines 21140--21145
[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/bx/n/
10 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/bx/n/10 print.summa
ry.lm[][][]\T1/ptm/m/n/10 ,
[1538] [1539] [1540] [1541] [1542]
Underfull \hbox (badness 1337) in paragraph at lines 21478--21484
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553]
[1554]
Underfull \hbox (badness 10000) in paragraph at lines 22222--22225
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by

Underfull \hbox (badness 1675) in paragraph at lines 22222--22225
\T1/fi4/bx/n/10 cutree(hclust.obj, k = k)\T1/ptm/m/n/10 , can be spec-i-fied fo
r ef-fi-ciency if al-ready
[1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564]
Underfull \hbox (badness 10000) in paragraph at lines 22797--22800
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/fi4/bx/n/10 y = ru
nmed(x, k) \T1/ptm/m/n/10 sim-ply has

Underfull \hbox (badness 3690) in paragraph at lines 22846--22850
[][][]\T1/fi4/bx/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey'
s end point rule and is called by de-fault from

Underfull \hbox (badness 1062) in paragraph at lines 22846--22850
\T1/fi4/bx/n/10 runmed(*, endrule = "median")\T1/ptm/m/n/10 . [][]\T1/fi4/bx/n/
10 smooth[][][] \T1/ptm/m/n/10 uses run-ning me-di-ans of 3 for its com-pound
[1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575]
[1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586]
[1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596]
Underfull \hbox (badness 3514) in paragraph at lines 24785--24790
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1597]
Underfull \hbox (badness 3514) in paragraph at lines 24847--24852
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1598]
Underfull \hbox (badness 3514) in paragraph at lines 24904--24909
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1599]
Underfull \hbox (badness 3514) in paragraph at lines 24965--24971
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1600] [1601] [1602]
Underfull \hbox (badness 2376) in paragraph at lines 25097--25100
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 , which is the value of the ex-pres-sion

Overfull \hbox (62.28088pt too wide) in paragraph at lines 25097--25100
\T1/fi4/bx/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input)-exp(-exp(lKa)*i
nput)) / (exp(lKa)-exp(lKe))\T1/ptm/m/n/10 . 
[1603]
Underfull \hbox (badness 3514) in paragraph at lines 25157--25162
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1604]
Underfull \hbox (badness 3514) in paragraph at lines 25213--25218
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1605]
Underfull \hbox (badness 3514) in paragraph at lines 25270--25275
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1606]
Underfull \hbox (badness 3514) in paragraph at lines 25325--25330
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1607]
Underfull \hbox (badness 6691) in paragraph at lines 25394--25399
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 x\T1/
ptm/m/n/10 . It is the value of the ex-pres-sion
[1608] [1609] [1610] [1611] [1612] [1613] [1614]
Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 25864--25867
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/fi4/bx/n/10 NULL\T1/ptm/m
/n/10 , the de-fault,
[1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625]
Underfull \hbox (badness 5431) in paragraph at lines 26463--26465
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1626] [1627] [1628]
Underfull \hbox (badness 5431) in paragraph at lines 26666--26669
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1629] [1630] [1631] [1632] [1633] [1634]
Underfull \hbox (badness 1337) in paragraph at lines 26977--26981
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1635] [1636]
Underfull \hbox (badness 10000) in paragraph at lines 27094--27097
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/fi4/bx/n/10 rt()\T1/ptm/m/n/10 , only for
[1637] [1638]
Underfull \hbox (badness 1616) in paragraph at lines 27267--27270
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1639]
Underfull \hbox (badness 4518) in paragraph at lines 27291--27294
[]\T1/ptm/m/n/10 For the \T1/fi4/bx/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-t
ion it must have a [][]\T1/fi4/bx/n/10 residuals[][][] \T1/ptm/m/n/10 method th
at ac-cepts
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650]
[1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660]
Underfull \hbox (badness 1337) in paragraph at lines 28590--28594
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1661] [1662] [1663] [1664]
Overfull \hbox (28.1622pt too wide) in paragraph at lines 28838--28841
[]\T1/ptm/m/n/10 The cu-mu-la-tive haz-ard $\OML/cmm/m/it/10 H\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = \OMS/cmsy/m/n/10 ^^@ []\OT1/cmr/m/n/10 (1
 \OMS/cmsy/m/n/10 ^^@ \OML/cmm/m/it/10 F\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1
/cmr/m/n/10 ))$ \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 -pweibull(t, a, b, lower = FA
LSE, log = TRUE)
[1665] [1666] [1667] [1668]
Underfull \hbox (badness 1337) in paragraph at lines 29061--29065
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1669] [1670]
Underfull \hbox (badness 5161) in paragraph at lines 29154--29156
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1671] [1672] [1673] [1674] [1675]
Underfull \hbox (badness 10000) in paragraph at lines 29510--29515
[]\T1/ptm/m/n/10 There is a \T1/fi4/bx/n/10 summary \T1/ptm/m/n/10 method for c
on-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/bx/n/10 table \T1/ptm/m/n/10 o
r

Underfull \hbox (badness 1303) in paragraph at lines 29510--29515
\T1/fi4/bx/n/10 xtabs(*, sparse=FALSE)\T1/ptm/m/n/10 , which gives ba-sic in-fo
r-ma-tion and per-forms a chi-squared test

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[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/bx/n/10 sparse=FALSE\T1/ptm/m/n/10 ,
 a con-tin-gency ta-ble in ar-ray rep-re-sen-ta-tion of S3 class
[1676] [1677] [1678]) (./stats4-pkg.tex
Chapter 9.
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                                                   [1685] [1686] [1687]
[1688]) (./tcltk-pkg.tex
Chapter 10.
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[]\T1/fi4/bx/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-in
g any Tk or Tcl com-mand by sim-ply run-ning
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[1703] [1704] [1705] [1706] [1707] [1708] [1709]) (./tools-pkg.tex [1710]
Chapter 11.

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[1711]
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\T1/fi4/bx/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatInProc
eedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatManual\T1/ptm/m/n/10 , \T1/fi4/bx
/n/10 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 formatMisc\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatPhdthesis\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 f
ormatTechreport \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph
a-bet-i-cally on the glyph

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\T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data
 are in the file
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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\T1/fi4/bx/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances
")\T1/ptm/m/n/10 .

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/fi4/bx/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 reduce \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/bx/n/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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\T1/fi4/bx/n/10 c("Depends", "Imports", "LinkingTo",      "Suggests", "Enhances
")\T1/ptm/m/n/10 .
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[]\T1/fi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul
d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ;
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/fi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1763] [1764] [1765] [1766]) (./utils-pkg.tex
Chapter 12.
[1767]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1768] [1769]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/fi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/fi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/fi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
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[]\T1/ptm/m/n/10 Argument \T1/fi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 584--590
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/fi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1786] [1787] [1788] [1789]
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[]\T1/ptm/m/n/10 None for \T1/fi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1790] [1791] [1792] [1793]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/fi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/fi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/fi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/fi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1794] [1795] [1796] [1797] [1798] [1799]
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[]\T1/ptm/m/n/10 files end-ing `\T1/fi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/fi
4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/fi4/m/sl/10 read.table[]
[][](..., header = TRUE, sep = ";")\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/fi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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\T1/fi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1808]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 logical or ex-pres-sion; if not \T1/fi4/m/sl/10 FALSE\T1/ptm/m
/n/10 , the ran-dom num-ber gen-er-a-tor state
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                                                   [1821] [1822] [1823]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1833] [1834]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1835] [1836]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1837] [1838]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1839]
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\T1/ptm/m/n/10 can be source archives or bi-nary pack-age archive files (as cre
-ated by
[1840]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages 
which these pack-

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\T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively)
. Not

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\T1/ptm/m/n/10 used if \T1/fi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of

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[]\T1/fi4/m/sl/10 TRUE \T1/ptm/m/n/10 means (as from \T1/phv/m/n/10 R \T1/ptm/m
/n/10 2.15.0) to use

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\T1/fi4/m/sl/10 c("Depends", "Imports", "LinkingTo", "Suggests") \T1/ptm/m/n/10
 for \T1/fi4/m/sl/10 pkgs \T1/ptm/m/n/10 and

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\T1/fi4/m/sl/10 c("Depends", "Imports", "LinkingTo") \T1/ptm/m/n/10 for added d
e-pen-den-cies: this

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[]\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/fi4/m/sl/10 configur
e.args \T1/ptm/m/n/10 for flag
[1841]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be

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\T1/ptm/m/n/10 passed to \T1/fi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.
[1842]
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[][][]\T1/fi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/fi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

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[]\T1/ptm/m/n/10 If a `\T1/fi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1861] [1862]
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by

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[][]\T1/fi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/fi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 the to-ken that was (or, is to be) com-pleted, as set by the l
ast call to
[1878] [1879]
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[]\T1/ptm/m/n/10 The name \T1/fi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1880] [1881]
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/fi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/fi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
[1906] [1907] [1908]
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[]\T1/ptm/m/n/10 The de-fault for \T1/fi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 9071--9077
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/fi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 logical (\T1/fi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[1911] [1912] [1913] [1914] [1915] [1916]
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[]\T1/ptm/m/n/10 Repository `\T1/fi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[1917] [1918] [1919] [1920] [1921]
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[1922]
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\T1/ptm/m/n/10 strictly, one of the val-ues \T1/fi4/m/sl/10 c("no", "cut", "wra
p")\T1/ptm/m/n/10 . De-faults to the
[1923] [1924] [1925] [1926]
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,

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\T1/ptm/m/n/10 and se-lected if their \T1/fi4/m/sl/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[1927] [1928] [1929]
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[][][]$\T1/fi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/m/sl/10 http : / / pubs . opengroup . 
org /

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\T1/fi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[6]
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 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- 

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[7] [8]
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@textrm Pol-icy[][], up-load to [][]@texttt ftp://CRAN.R-project.org/incoming/[
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[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
age#Commercialized_
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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 

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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied
 

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 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, 
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[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
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Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27]
Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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@texttt doku.php?id=tips:graphics-base:2yaxes[][][] @textrm for more in-for-ma-
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[41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5]
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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
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 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, 
[7] [8]
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@textrm Pol-icy[][], up-load to [][]@texttt ftp://CRAN.R-project.org/incoming/[
][][] @textrm and send an email to
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
age#Commercialized_
Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27]
Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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@texttt doku.php?id=tips:graphics-base:2yaxes[][][] @textrm for more in-for-ma-
tion, in-clud-ing strong
[41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (52 pages, 379411 bytes).
Transcript written on R-FAQ.log.
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
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@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

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[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
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 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
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[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

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@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16] Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
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 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
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@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
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[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

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@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

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@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38] [39]
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[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

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@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-

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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
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@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
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[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
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@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in

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[]@textrm R has been built with Linux `@texttt ix86[]@textrm '[] and `@texttt x
86_64[]@textrm '[] C and C@texttt ++ @textrm com-pil-ers

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@textrm ([][]@texttt http://clang.llvm.org[][][]@textrm , ver-sions 2.9 and 3.0
) based on the Clang front-ends,
[51] [52] [53]
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[]@textrm With Xcode 4.2 and later you need to in-stall a pack-age named like [
][]@texttt http://r.research.att.com/
[54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]
[55]
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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[56] [57] [58]
Underfull \hbox (badness 10000) in paragraph at lines 4531--4557
@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[59] [60]
Underfull \hbox (badness 2486) in paragraph at lines 4701--4710
[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing
[63] (Function and variable index) [64] (Concept index) [65]
(Environment variable index) [66] [67] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (70 pages, 400469 bytes).
Transcript written on R-admin.log.
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(/<<PKGBUILDDIR>>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1
[1] Chapter 2 [2] [3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
Underfull \hbox (badness 3965) in paragraph at lines 780--793
@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

Overfull \hbox (28.38092pt too wide) in paragraph at lines 852--858
[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
Underfull \hbox (badness 2970) in paragraph at lines 1035--1039
 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
Underfull \hbox (badness 10000) in paragraph at lines 1174--1178
[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

Underfull \hbox (badness 10000) in paragraph at lines 1174--1178
@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16] Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
Underfull \hbox (badness 2393) in paragraph at lines 2102--2109
 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
Underfull \hbox (badness 8170) in paragraph at lines 2150--2154
@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
Underfull \hbox (badness 10000) in paragraph at lines 2730--2732
[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

Underfull \hbox (badness 10000) in paragraph at lines 2754--2762
@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

Underfull \hbox (badness 2302) in paragraph at lines 2834--2840
@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38] [39]
Underfull \hbox (badness 10000) in paragraph at lines 3062--3068
[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

Underfull \hbox (badness 10000) in paragraph at lines 3062--3068
@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-

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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
Underfull \hbox (badness 3428) in paragraph at lines 3448--3461
@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
Underfull \hbox (badness 3701) in paragraph at lines 3683--3687
[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
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@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in

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[]@textrm R has been built with Linux `@texttt ix86[]@textrm '[] and `@texttt x
86_64[]@textrm '[] C and C@texttt ++ @textrm com-pil-ers

Underfull \hbox (badness 2951) in paragraph at lines 1--3924
@textrm ([][]@texttt http://clang.llvm.org[][][]@textrm , ver-sions 2.9 and 3.0
) based on the Clang front-ends,
[51] [52] [53]
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[]@textrm With Xcode 4.2 and later you need to in-stall a pack-age named like [
][]@texttt http://r.research.att.com/
[54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]
[55]
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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[56] [57] [58]
Underfull \hbox (badness 10000) in paragraph at lines 4531--4557
@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[59] [60]
Underfull \hbox (badness 2486) in paragraph at lines 4701--4710
[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing
[63] (Function and variable index) [64] (./R-admin.vrs) (Concept index)
[65] (./R-admin.cps) (Environment variable index) [66] (./R-admin.ens) [67] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt9.pfb>
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1
[1] Chapter 2 [2] [3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
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@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

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[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
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 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
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[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

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@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16] Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
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 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
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@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
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[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

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@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

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@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38] [39]
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[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

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@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-

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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
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@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
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[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
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@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in

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[]@textrm R has been built with Linux `@texttt ix86[]@textrm '[] and `@texttt x
86_64[]@textrm '[] C and C@texttt ++ @textrm com-pil-ers

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@textrm ([][]@texttt http://clang.llvm.org[][][]@textrm , ver-sions 2.9 and 3.0
) based on the Clang front-ends,
[51] [52] [53]
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[]@textrm With Xcode 4.2 and later you need to in-stall a pack-age named like [
][]@texttt http://r.research.att.com/
[54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]
[55]
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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[56] [57] [58]
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@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[59] [60]
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[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing
[63] (Function and variable index) [64] (./R-admin.vrs) (Concept index)
[65] (./R-admin.cps) (Environment variable index) [66] (./R-admin.ens) [67] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (72 pages, 445236 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
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(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements)
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 [][]@textbf dataframes2xls[][]| 

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 [][]@textbf RPostgreSQL[][]| 

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 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1] Cross reference values unknown; you must run TeX again.
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
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[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
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[]@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to 
a Java client for `Mon-goDB'

Underfull \hbox (badness 10000) in paragraph at lines 1354--1358
@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
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[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
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[]@textrm Packages [][]@textbf hdf5[][]@textrm , [][]@textbf h5r[][]@textrm , B
io-con-duc-tor's @textbf rhdf5@textrm , [][]@textbf RNetCDF[][]@textrm , [][]@t
extbf ncdf[][] @textrm and [][]@textbf ncdf4[][] @textrm on

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@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
Underfull \hbox (badness 2538) in paragraph at lines 2211--2218
@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


Underfull \hbox (badness 10000) in paragraph at lines 2266--2275
@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
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@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (Concept index) [32] [33] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (36 pages, 264806 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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 [][]@textbf dataframes2xls[][]| 

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 [][]@textbf RPostgreSQL[][]| 

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 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1]
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
Underfull \hbox (badness 2343) in paragraph at lines 248--258
[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
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[]@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to 
a Java client for `Mon-goDB'

Underfull \hbox (badness 10000) in paragraph at lines 1354--1358
@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
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[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
Underfull \hbox (badness 10000) in paragraph at lines 1752--1758
[]@textrm Packages [][]@textbf hdf5[][]@textrm , [][]@textbf h5r[][]@textrm , B
io-con-duc-tor's @textbf rhdf5@textrm , [][]@textbf RNetCDF[][]@textrm , [][]@t
extbf ncdf[][] @textrm and [][]@textbf ncdf4[][] @textrm on

Underfull \hbox (badness 10000) in paragraph at lines 1752--1758
@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
Underfull \hbox (badness 2538) in paragraph at lines 2211--2218
@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


Underfull \hbox (badness 10000) in paragraph at lines 2266--2275
@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
Overfull \hbox (65.74289pt too wide) in paragraph at lines 2357--2360
@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (./R-data.vrs [32]) (Concept index) [33]
(./R-data.cps) [34] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (38 pages, 304722 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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 [][]@textbf dataframes2xls[][]| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 107--107
 [][]@textbf RPostgreSQL[][]| 

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 [][]@textbf xlsReadWrite[][]| 
Chapter 1 [1]
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
Underfull \hbox (badness 2343) in paragraph at lines 248--258
[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
Underfull \hbox (badness 3989) in paragraph at lines 1354--1358
[]@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to 
a Java client for `Mon-goDB'

Underfull \hbox (badness 10000) in paragraph at lines 1354--1358
@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
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[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
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[]@textrm Packages [][]@textbf hdf5[][]@textrm , [][]@textbf h5r[][]@textrm , B
io-con-duc-tor's @textbf rhdf5@textrm , [][]@textbf RNetCDF[][]@textrm , [][]@t
extbf ncdf[][] @textrm and [][]@textbf ncdf4[][] @textrm on

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@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
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@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


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@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
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@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (./R-data.vrs [32]) (Concept index) [33]
(./R-data.cps) [34] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
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fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (38 pages, 304714 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
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conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3]
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[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
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 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

Underfull \hbox (badness 2608) in paragraph at lines 383--400
 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
Underfull \hbox (badness 3118) in paragraph at lines 556--560
 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8] [9]
Underfull \hbox (badness 2057) in paragraph at lines 737--745
@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[22] [23]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 1826--1826
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[24] [25]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[26] [27]
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 @textrm de-fined$@textsy i$ @textrm [Writ-ing R doc-u-men-ta-tion files], page
 $@textsy h$@textrm un-de-fined$@textsy i$[][]@textrm , for in-for-ma-tion

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 @textrm `@texttt tests/Examples/@textttsl pkg@texttt -Ex.Rout.save[]@textrm '[
], the out-put of run-ning the ex-am-ples is

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 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[28]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[29] [30] [31] [32] [33] [34]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[35] [36] [37] [38] [39] [40] [41] [42] [43]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[44] [45] [46] [47]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[48] [49]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

Underfull \hbox (badness 4403) in paragraph at lines 3833--3838
@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[50] [51] [52] [53]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
Chapter 2 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 5176--5183
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[68]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

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@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[69]
Underfull \hbox (badness 3503) in paragraph at lines 5353--5359
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[70] [71]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[72]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [73] [74] [75] [76] [77]
Overfull \hbox (71.38544pt too wide) in paragraph at lines 6006--6009
[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6097--6101
@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [80] [81] [82]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[83]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[84]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[85] [86]
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@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[87] [88]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[89]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[90] [91] Chapter 5 [92] [93] [94] [95] [96] [97] [98] [99] [100] [101]
[102]
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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[103]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[114]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[115] [116] [117] [118] [119] [120] [121] [122]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[123]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 
[124]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[125] [126]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[127]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[128]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[129] Chapter 6 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146]
Underfull \hbox (badness 6332) in paragraph at lines 11252--11255
[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault
[147]
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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on

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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [148] [149] Chapter 8 [150]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[151] [152]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[153] [154] [155]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[156] [157]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age [][]@textbf rscproxy[][] @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[158] [159]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[160] [161] (Function and variable index) [162] (Concept index) [163] [164] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share
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live/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcirc
le1.pfb>
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(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3]
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[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
Underfull \hbox (badness 3826) in paragraph at lines 383--400
 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

Underfull \hbox (badness 2608) in paragraph at lines 383--400
 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
Underfull \hbox (badness 3118) in paragraph at lines 556--560
 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8] [9]
Underfull \hbox (badness 2057) in paragraph at lines 737--745
@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[22] [23]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[24] [25]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[26] [27]
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 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[28]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[29] [30] [31] [32] [33] [34]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[35] [36] [37] [38] [39] [40] [41] [42] [43]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[44] [45] [46] [47]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[48] [49]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

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@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[50] [51] [52]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
[53] Chapter 2 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
[66] [67]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[68]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

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@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[69]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[70] [71]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[72]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [73] [74] [75] [76] [77]
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[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[78] [79]
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@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [80] [81] [82]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[83]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[84]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[85] [86]
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@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[87] [88]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[89]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[90] [91] Chapter 5 [92] [93] [94] [95] [96] [97] [98] [99] [100] [101]
[102]
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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[103]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[114]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[115] [116] [117] [118] [119] [120] [121] [122]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[123]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 
[124]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[125] [126]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[127]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[128]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[129] Chapter 6 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault
[147]
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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on

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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [148] [149] Chapter 8 [150]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[151] [152]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[153] [154] [155]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[156] [157]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age [][]@textbf rscproxy[][] @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[158] [159]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[160] [161] (Function and variable index) [162] (./R-exts.vrs [163] [164])
(Concept index) [165] (./R-exts.cps [166]) [167] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
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usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texliv
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ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
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) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3]
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[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
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 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

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 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
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 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8] [9]
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@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[22] [23]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[24] [25]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[26] [27]
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 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[28]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[29] [30] [31] [32] [33] [34]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[35] [36] [37] [38] [39] [40] [41] [42] [43]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[44] [45] [46] [47]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[48] [49]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

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@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[50] [51] [52]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
[53] Chapter 2 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
[66] [67]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[68]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

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@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[69]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[70] [71]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[72]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [73] [74] [75] [76] [77]
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[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[78] [79]
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@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [80] [81] [82]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[83]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[84]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[85] [86]
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@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[87] [88]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[89]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[90] [91] Chapter 5 [92] [93] [94] [95] [96] [97] [98] [99] [100] [101]
[102]
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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[103]
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ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[114]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[115] [116] [117] [118] [119] [120] [121] [122]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[123]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 
[124]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[125] [126]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[127]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[128]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[129] Chapter 6 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault
[147]
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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on

Underfull \hbox (badness 10000) in paragraph at lines 11313--11318
[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [148] [149] Chapter 8 [150]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[151] [152]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[153] [154] [155]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[156] [157]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age [][]@textbf rscproxy[][] @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[158] [159]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[160] [161] (Function and variable index) [162] (./R-exts.vrs [163] [164])
(Concept index) [165] (./R-exts.cps [166]) [167] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3]
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[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
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 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

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 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
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 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8] [9]
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@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[22] [23]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[24] [25]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[26] [27]
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 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[28]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[29] [30] [31] [32] [33] [34]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[35] [36] [37] [38] [39] [40] [41] [42] [43]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[44] [45] [46] [47]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[48] [49]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

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@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[50] [51] [52]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
[53] Chapter 2 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
[66] [67]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[68]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

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@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[69]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[70] [71]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[72]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [73] [74] [75] [76] [77]
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[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[78] [79]
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@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [80] [81] [82]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[83]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[84]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[85] [86]
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@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[87] [88]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[89]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[90] [91] Chapter 5 [92] [93] [94] [95] [96] [97] [98] [99] [100] [101]
[102]
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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[103]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[114]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[115] [116] [117] [118] [119] [120] [121] [122]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[123]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 
[124]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[125] [126]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[127]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[128]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
[129] Chapter 6 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault
[147]
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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on

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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [148] [149] Chapter 8 [150]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[151] [152]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[153] [154] [155]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[156] [157]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age [][]@textbf rscproxy[][] @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[158] [159]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[160] [161] (Function and variable index) [162] (./R-exts.vrs [163] [164])
(Concept index) [165] (./R-exts.cps [166]) [167] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
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sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[]
[]@textrm , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] Appendix E [98] Appendix F
[99] [100] )
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ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[]
[]@textrm , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] (./R-intro.vrs [98]
[99]) Appendix E [100] (./R-intro.cps [101]) Appendix F [102] [103] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[]
[]@textrm , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] (./R-intro.vrs [98]
[99]) Appendix E [100] (./R-intro.cps [101]) Appendix F [102] [103] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13]
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@textrm level by @texttt saveRDS[]@textrm /@texttt readRDS[] @textrm (and their
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[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
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[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
Chapter 2 [24] [25] [26] [27]
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[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
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Chapter 3 [28] [29] Chapter 4 [30] [31] Chapter 5 [32] [33] Chapter 6 [34]
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[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
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@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
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[35] [36] [37] [38] [39] [40] [41]
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@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
r calls
[42] [43] [44]
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[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[45] Chapter 7 [46] [47] [48] [49] [50]
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 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
Chapter 8 [51]
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 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55]
(Function and variable index) [56] (Concept index) [57] [58] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
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[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
Chapter 2 [24] [25] [26] [27]
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[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
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Chapter 3 [28] [29] Chapter 4 [30] [31] Chapter 5 [32] [33] Chapter 6 [34]
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[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
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@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
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[35] [36] [37] [38] [39] [40] [41]
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@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
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[42] [43] [44]
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[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[45] Chapter 7 [46] [47] [48] [49] [50]
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 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
Chapter 8 [51]
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 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55]
(Function and variable index) [56] (./R-ints.vrs [57]) (Concept index) [58]
(./R-ints.cps) [59] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[7] [8] [9] [10] [11] [12] [13]
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[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
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[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
Chapter 2 [24] [25] [26] [27]
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[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
 checked (via `@texttt tests/primitives.R[]@textrm '[])
Chapter 3 [28] [29] Chapter 4 [30] [31] Chapter 5 [32] [33] Chapter 6 [34]
Overfull \hbox (0.6417pt too wide) in paragraph at lines 2666--2669
[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
//www.stat.auckland.ac.nz/

Underfull \hbox (badness 10000) in paragraph at lines 2666--2669
@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
ckland.ac.nz/~paul/R/
[35] [36] [37] [38] [39] [40] [41]
Underfull \hbox (badness 5832) in paragraph at lines 3219--3235
[]@textrm Users may use @texttt grDevices::setGraphicsEventEnv[] @textrm to set
 the @texttt eventEnv[] @textrm en-

Underfull \hbox (badness 2556) in paragraph at lines 3219--3235
@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
r calls
[42] [43] [44]
Underfull \hbox (badness 2245) in paragraph at lines 3446--3450
[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[45] Chapter 7 [46] [47] [48] [49] [50]
Underfull \hbox (badness 10000) in paragraph at lines 3718--3726
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
Chapter 8 [51]
Underfull \hbox (badness 2088) in paragraph at lines 3820--3829
 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55]
(Function and variable index) [56] (./R-ints.vrs [57]) (Concept index) [58]
(./R-ints.cps) [59] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (63 pages, 396706 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 300--301
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4329--4331
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (Concept Index)
[59] Appendix A [60] [61] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (64 pages, 330301 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 300--301
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4329--4331
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (./R-lang.vrs
[59]) (Concept Index) [60] (./R-lang.cps) Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (67 pages, 378809 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian)
 restricted \write18 enabled.
entering extended mode
(/<<PKGBUILDDIR>>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 300--301
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4329--4331
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (./R-lang.vrs
[59]) (Concept Index) [60] (./R-lang.cps) Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (67 pages, 378804 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory `/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory `/<<PKGBUILDDIR>>'
make		prefix=/<<PKGBUILDDIR>>/debian/r-base-core/usr  \
			infodir=/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory `/<<PKGBUILDDIR>>'
make[2]: Entering directory `/<<PKGBUILDDIR>>/doc/manual'
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/dir' ...
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
make[2]: Leaving directory `/<<PKGBUILDDIR>>/doc/manual'
make[1]: Leaving directory `/<<PKGBUILDDIR>>'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/*.gz
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 66.9% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-FAQ.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-admin.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.3% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-data.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-1
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 71.8% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info-2
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info.gz:	 65.3% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-exts.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-intro.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.4% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-ints.info
/<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.2% -- replaced with /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir		\
		/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir.old	
removed `/<<PKGBUILDDIR>>/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
					usr/share/lintian/overrides \
					usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /<<PKGBUILDDIR>>/debian/r-mathlib/usr/lib; \
			ls -l ; \
			mv -v  libRmath.so 	     libRmath.so.1.0.0; \
			ln -sv libRmath.so.1.0.0 libRmath.so.1; \
			ln -sv libRmath.so.1  libRmath.so)
total 1492
-rw-rw-r-- 1 root root 966936 Mar 17 23:46 libRmath.a
-rwxrwxr-x 1 root root 557007 Mar 17 23:46 libRmath.so
drwxr-xr-x 1 root root     22 Mar 18 00:01 pkgconfig
`libRmath.so' -> `libRmath.so.1.0.0'
`libRmath.so.1' -> `libRmath.so.1.0.0'
`libRmath.so' -> `libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
			/<<PKGBUILDDIR>>/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /<<PKGBUILDDIR>>/debian/r-base-core/etc/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/etc; \
		cat /<<PKGBUILDDIR>>/debian/Renviron-R_LIBS.patch | patch --verbose;	\
		mv Makeconf repositories ldpaths ../../../../etc/R/;	\
		mv Renviron Renviron.ucf;				\
		ln -s  /etc/R/Makeconf	.;				\
		ln -s  /etc/R/Renviron	.;				\
		ln -s  /etc/R/Renviron.site .;				\
		ln -s  /etc/R/Rprofile.site .;				\
		ln -s  /etc/R/ldpaths   .;                              \
		ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
Patching file Renviron using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/bin; \
		cat /<<PKGBUILDDIR>>/debian/javareconf.patch | patch --verbose )
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- javareconf.orig	2008-08-25 06:26:13.000000000 -0500
|+++ javareconf	2008-08-25 06:30:49.000000000 -0500
--------------------------
Patching file javareconf using Plan A...
Hunk #1 succeeded at 359 with fuzz 2 (offset 67 lines).
done
install -m 0644 debian/R.bash_completion	\
		debian/r-base-core/etc/bash_completion.d/R
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/; \
		ln -sv R/lib/libR.so . )
`./libR.so' -> `R/lib/libR.so'
# edd 21 Jun 2012  add icon and desktop file from Philip Johnson's patch
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
		debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
		debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core NEWS ONEWS OONEWS README \
					debian/README.Atlas \
					debian/README.mathlib
dh_installdocs -pr-mathlib  NEWS ONEWS OONEWS README \
					debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
	   /<<PKGBUILDDIR>>/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
	   /<<PKGBUILDDIR>>/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
	   /<<PKGBUILDDIR>>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
install -p -m 0644  debian/r-base-core-dbg.lintian \
	   /<<PKGBUILDDIR>>/debian/r-base-core-dbg/usr/share/lintian/overrides/r-base-core-dbg
dh_installchangelogs -a	-k NEWS 
dh_strip	--sourcedir=/<<PKGBUILDDIR>>/debian/r-base-core --dbg-package=r-base-core-dbg
Unknown option: sourcedir
dh_strip 	--sourcedir=/<<PKGBUILDDIR>>/debian/r-mathlib
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /<<PKGBUILDDIR>>/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXss.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXext.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so was not linked against libICE.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/grDevices/libs/cairo.so debian/r-base-core/usr/lib/R/modules/R_X11.so were not linked against libglib-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so was not linked against libSM.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol fmod used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol trunc used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol sincos used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol sinh used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol floor used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol log10 used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol pow used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol expm1 used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol exp used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol lgamma used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-mathlib/usr/lib/libRmath.so.1.0.0 was not linked against libgomp.so.1 (it uses none of the library's symbols)
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a		-X'usr/bin/R' -X'usr/bin/Rscript' \
				-X'usr/lib/debug/usr/bin/Rscript' \
				-X'usr/lib/R/bin/Rscript'  	  \
				-X'usr/lib/R/etc/Renviron.ucf'    \
					-XLibIndex -Xindex.txt \
					-Xfunction.html -Xpackages.html
dh_builddeb -a
dpkg-deb: building package `r-mathlib' in `../r-mathlib_2.15.1-4+deb7u1_armhf.deb'.
dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_2.15.1-4+deb7u1_armhf.deb'.
dpkg-deb: building package `r-base-core' in `../r-base-core_2.15.1-4+deb7u1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-base_2.15.1-4+deb7u1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build r-base-2.15.1
dpkg-buildpackage: binary only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-03-18T00:03:11Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-base_2.15.1-4+deb7u1_armhf.changes:
-------------------------------------

Format: 1.8
Date: Fri, 17 Mar 2017 11:23:59 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: armhf
Version: 2.15.1-4+deb7u1
Distribution: wheezy-staging
Urgency: high
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Changes:
 r-base (2.15.1-4+deb7u1) wheezy-security; urgency=high
 .
   * src/library/grDevices/src/devPS.c: Apply upstream commits r71664 and
     r71667 related to CVE-2016-8714 reported as TALOS-2016-0227
Checksums-Sha1:
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 86aae667365a38a7b3bd84cbb20ac65fbc36650c 597164 r-mathlib_2.15.1-4+deb7u1_armhf.deb
 a59cbc4b8659615b0d5403abd3c791b4ecef9c43 2815834 r-base-core-dbg_2.15.1-4+deb7u1_armhf.deb
Checksums-Sha256:
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 3b93e9503f6e0ed8f84226a505efd9111535577d6a320d2d8a95c9d6692f3892 597164 r-mathlib_2.15.1-4+deb7u1_armhf.deb
 d459e243b7be8538cf5051090326d9f8180e1bcff06f78734d20e1c5160191fb 2815834 r-base-core-dbg_2.15.1-4+deb7u1_armhf.deb
Files:
 e4895825fd4b912452294895c2c27062 20485932 gnu-r optional r-base-core_2.15.1-4+deb7u1_armhf.deb
 cfdb42c5a7a55b5758b2cfb5f7a52267 597164 gnu-r optional r-mathlib_2.15.1-4+deb7u1_armhf.deb
 1e36e5040064aa57c42c123af1b2ab0f 2815834 debug extra r-base-core-dbg_2.15.1-4+deb7u1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-base-core_2.15.1-4+deb7u1_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 20485932 bytes: control archive=27136 bytes.
     118 bytes,     6 lines      conffiles            
    2744 bytes,    44 lines      control              
   68513 bytes,   880 lines      md5sums              
    2453 bytes,    73 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
     667 bytes,    34 lines   *  preinst              #!/bin/sh
     689 bytes,    26 lines   *  prerm                #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 2.15.1-4+deb7u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 28378
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3 | libatlas3-base, libbz2-1.0, libc6 (>= 2.13-28), libcairo2 (>= 1.6.0), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.3), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.2.1), libice6 (>= 1:1.0.0), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3 | libatlas3-base, liblzma5 (>= 5.1.1alpha+20120614), libpango1.0-0 (>= 1.14.0), libpcre3 (>= 8.10), libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libsm6, libtiff4 (>> 3.9.5-3~), libx11-6, libxext6, libxss1, libxt6, tcl8.5 (>= 8.5.0), tk8.5 (>= 8.5.0), zlib1g (>= 1:1.1.4), ucf (>= 3.0)
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over two thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

drwxr-xr-x root/root         0 2017-03-18 00:02 ./
drwxr-xr-x root/root         0 2017-03-17 23:46 ./etc/
drwxr-xr-x root/root         0 2017-03-18 00:01 ./etc/R/
-rw-r--r-- root/root      5458 2017-03-17 23:46 ./etc/R/Makeconf
-rw-r--r-- root/root       608 2017-03-18 00:01 ./etc/R/Renviron.site
-rw-r--r-- root/root       792 2017-03-18 00:01 ./etc/R/Rprofile.site
-rw-r--r-- root/root       631 2017-03-17 23:46 ./etc/R/ldpaths
-rw-r--r-- root/root      1159 2017-03-17 23:46 ./etc/R/repositories
drwxr-xr-x root/root         0 2017-03-18 00:01 ./etc/bash_completion.d/
-rw-r--r-- root/root     13354 2017-03-18 00:01 ./etc/bash_completion.d/R
drwxr-xr-x root/root         0 2017-03-17 23:46 ./etc/ld.so.conf.d/
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/bin/
-rwxr-xr-x root/root      8577 2017-03-17 23:46 ./usr/bin/R
-rwxr-xr-x root/root      7244 2017-03-18 00:01 ./usr/bin/Rscript
drwxr-xr-x root/root         0 2017-03-18 00:02 ./usr/lib/
drwxr-xr-x root/root         0 2017-03-18 00:02 ./usr/lib/R/
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
-rw-r--r-- root/root    233517 2017-03-17 23:46 ./usr/lib/R/NEWS
-rw-r--r-- root/root    460855 2017-03-17 23:46 ./usr/lib/R/NEWS.pdf
-rw-r--r-- root/root        46 2017-03-17 23:46 ./usr/lib/R/SVN-REVISION
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/lib/R/bin/
-rwxr-xr-x root/root      1828 2017-03-17 23:46 ./usr/lib/R/bin/BATCH
-rwxr-xr-x root/root      2112 2017-03-17 23:46 ./usr/lib/R/bin/COMPILE
-rwxr-xr-x root/root       823 2017-03-17 23:46 ./usr/lib/R/bin/INSTALL
-rwxr-xr-x root/root      1579 2017-03-17 23:46 ./usr/lib/R/bin/LINK
-rwxr-xr-x root/root      8577 2017-03-17 23:46 ./usr/lib/R/bin/R
-rwxr-xr-x root/root       158 2017-03-17 23:46 ./usr/lib/R/bin/REMOVE
-rwxr-xr-x root/root      1376 2017-03-17 23:46 ./usr/lib/R/bin/Rcmd
-rwxr-xr-x root/root       312 2017-03-17 23:46 ./usr/lib/R/bin/Rd2pdf
-rwxr-xr-x root/root       359 2017-03-17 23:46 ./usr/lib/R/bin/Rdconv
-rwxr-xr-x root/root       258 2017-03-17 23:46 ./usr/lib/R/bin/Rdiff
-rwxr-xr-x root/root       310 2017-03-17 23:46 ./usr/lib/R/bin/Rprof
-rwxr-xr-x root/root      7244 2017-03-18 00:01 ./usr/lib/R/bin/Rscript
-rwxr-xr-x root/root       155 2017-03-17 23:46 ./usr/lib/R/bin/SHLIB
-rwxr-xr-x root/root       318 2017-03-17 23:46 ./usr/lib/R/bin/Stangle
-rwxr-xr-x root/root       316 2017-03-17 23:46 ./usr/lib/R/bin/Sweave
-rwxr-xr-x root/root       317 2017-03-17 23:46 ./usr/lib/R/bin/build
-rwxr-xr-x root/root       317 2017-03-17 23:46 ./usr/lib/R/bin/check
-rwxr-xr-x root/root      7486 2017-03-17 23:46 ./usr/lib/R/bin/config
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/lib/R/bin/exec/
-rwxr-xr-x root/root      4132 2017-03-18 00:01 ./usr/lib/R/bin/exec/R
-rwxr-xr-x root/root      3602 2017-03-17 23:46 ./usr/lib/R/bin/f77_f2c
-rwxr-xr-x root/root     13934 2017-03-18 00:01 ./usr/lib/R/bin/javareconf
-rwxr-xr-x root/root     13760 2017-03-17 23:46 ./usr/lib/R/bin/javareconf.orig
-rwxr-xr-x root/root    274264 2017-03-17 23:46 ./usr/lib/R/bin/libtool
-rwxr-xr-x root/root      3496 2017-03-17 23:46 ./usr/lib/R/bin/mkinstalldirs
-rwxr-xr-x root/root       415 2017-03-17 23:46 ./usr/lib/R/bin/pager
-rwxr-xr-x root/root      4121 2017-03-17 23:46 ./usr/lib/R/bin/rtags
drwxr-xr-x root/root         0 2017-03-18 00:02 ./usr/lib/R/etc/
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
-rw-r--r-- root/root      1572 2017-03-17 23:46 ./usr/lib/R/etc/Renviron.orig
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site
-rw-r--r-- root/root      1875 2017-03-18 00:01 ./usr/lib/R/etc/Renviron.ucf
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
lrwxrwxrwx root/root         0 2017-03-18 00:01 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2017-03-18 00:01 ./usr/lib/R/etc/repositories -> /etc/R/repositories
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/lib/R/lib/
-rw-r--r-- root/root   2429952 2017-03-18 00:01 ./usr/lib/R/lib/libR.so
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/
-rw-r--r-- root/root      1022 2017-03-17 23:46 ./usr/lib/R/library/base/CITATION
-rw-r--r-- root/root       270 2017-03-17 23:46 ./usr/lib/R/library/base/DESCRIPTION
-rw-r--r-- root/root     22369 2017-03-17 23:46 ./usr/lib/R/library/base/INDEX
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/
-rw-r--r-- root/root     20000 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/Rd.rds
-rw-r--r-- root/root       245 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/demo.rds
-rw-r--r-- root/root     20562 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/hsearch.rds
-rw-r--r-- root/root     11776 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/links.rds
-rw-r--r-- root/root       463 2017-03-17 23:46 ./usr/lib/R/library/base/Meta/package.rds
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-rw-r--r-- root/root      4707 2017-03-17 23:46 ./usr/lib/R/library/base/R/Rprofile
-rw-r--r-- root/root      3675 2017-03-17 23:46 ./usr/lib/R/library/base/R/base
-rw-r--r-- root/root    727689 2017-03-17 23:46 ./usr/lib/R/library/base/R/base.rdb
-rw-r--r-- root/root     12380 2017-03-17 23:46 ./usr/lib/R/library/base/R/base.rdx
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/demo/
-rw-r--r-- root/root      1102 2017-03-17 23:46 ./usr/lib/R/library/base/demo/error.catching.R
-rw-r--r-- root/root      4197 2017-03-17 23:46 ./usr/lib/R/library/base/demo/is.things.R
-rw-r--r-- root/root      2072 2017-03-17 23:46 ./usr/lib/R/library/base/demo/recursion.R
-rw-r--r-- root/root      1519 2017-03-17 23:46 ./usr/lib/R/library/base/demo/scoping.R
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-rw-r--r-- root/root     30586 2017-03-17 23:46 ./usr/lib/R/library/base/help/AnIndex
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drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/html/
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/po/
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drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/lib/R/library/base/po/en@quot/LC_MESSAGES/
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r-mathlib_2.15.1-4+deb7u1_armhf.deb
-----------------------------------

 new debian package, version 2.0.
 size 597164 bytes: control archive=1773 bytes.
    1804 bytes,    39 lines      control              
     867 bytes,    13 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
 Source: r-base
 Version: 2.15.1-4+deb7u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 861
 Depends: libc6 (>= 2.13-28), libgomp1 (>= 4.2.1)
 Recommends: r-base-core (= 2.15.1-4+deb7u1), r-base-dev (= 2.15.1-4+deb7u1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

drwxr-xr-x root/root         0 2017-03-18 00:02 ./
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drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/include/
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-rw-r--r-- root/root    288224 2017-03-18 00:01 ./usr/lib/libRmath.a
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-rw-r--r-- root/root    143108 2017-03-18 00:01 ./usr/lib/libRmath.so.1.0.0
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-rw-r--r-- root/root       174 2017-03-17 23:46 ./usr/lib/pkgconfig/libRmath.pc
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/share/
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-03-18 00:02 ./usr/share/doc/r-mathlib/
lrwxrwxrwx root/root         0 2017-03-18 00:02 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz
-rw-r--r-- root/root    140671 2010-09-16 22:02 ./usr/share/doc/r-mathlib/ONEWS.gz
-rw-r--r-- root/root    154390 2011-02-11 23:05 ./usr/share/doc/r-mathlib/OONEWS.gz
-rw-r--r-- root/root      3922 2010-10-08 22:05 ./usr/share/doc/r-mathlib/README
-rw-r--r-- root/root      3026 2017-03-17 22:58 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root     26050 2017-03-17 22:58 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     81415 2017-03-17 23:42 ./usr/share/doc/r-mathlib/changelog.gz
-rw-r--r-- root/root     20761 2017-03-17 22:58 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1370 2012-04-15 22:05 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/share/lintian/
drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       175 2017-03-17 22:58 ./usr/share/lintian/overrides/r-mathlib


r-base-core-dbg_2.15.1-4+deb7u1_armhf.deb
-----------------------------------------

 new debian package, version 2.0.
 size 2815834 bytes: control archive=1808 bytes.
    1785 bytes,    38 lines      control              
    1629 bytes,    20 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 2.15.1-4+deb7u1
 Architecture: armhf
 Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 7270
 Depends: r-base-core (= 2.15.1-4+deb7u1), r-base-dev (= 2.15.1-4+deb7u1)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

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drwxr-xr-x root/root         0 2017-03-18 00:01 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-03-18 00:02 ./usr/share/doc/r-base-core-dbg/
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-rw-r--r-- root/root     20761 2017-03-17 22:58 ./usr/share/doc/r-base-core-dbg/copyright
drwxr-xr-x root/root         0 2017-03-17 23:46 ./usr/share/lintian/
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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 245660
Build-Time: 3880
Distribution: wheezy-staging
Host Architecture: armhf
Install-Time: 1823
Job: r-base_2.15.1-4+deb7u1
Machine Architecture: armhf
Package: r-base
Package-Time: 5774
Source-Version: 2.15.1-4+deb7u1
Space: 245660
Status: successful
Version: 2.15.1-4+deb7u1
--------------------------------------------------------------------------------
Finished at 2017-03-18T00:03:11Z
Build needed 01:36:14, 245660k disc space
Raspbian Package Auto-Building

Build log for r-base (2.15.1-4+deb7u1) on armhf
