Raspbian Package Auto-Building

Build log for python-cobra (0.5.9-1) on armhf

python-cobra → 0.5.9-1 → armhf → 2017-02-05 13:20:33 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| python-cobra 0.5.9-1 (armhf)                 Sun, 05 Feb 2017 12:52:00 +0000 |
+==============================================================================+

Package: python-cobra
Version: 0.5.9-1
Source Version: 0.5.9-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-3ad25276-983f-41cf-b634-9f7685bf0a1f' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9730 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.7 MB]
Fetched 21.4 MB in 25s (839 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-cobra.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2714 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.9-1 (dsc) [2424 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.9-1 (tar) [2704 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.9-1 (diff) [8216 B]
Fetched 2714 kB in 0s (3361 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-PzdeL7/python-cobra-0.5.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-PzdeL7' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZRq8k6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZRq8k6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (3352 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 98 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (70.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-pytest, python3-pytest, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
Filtered Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-pytest, python3-pytest, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ Packages [670 B]
Fetched 2591 B in 0s (4063 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils bsdmainutils cpp cpp-6
  cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  file g++-6 gcc gcc-6 gcc-6-base gettext gettext-base gfortran gfortran-6
  groff-base intltool-debian libamd2 libarchive-zip-perl libasan3 libatomic1
  libblas-common libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libcc1-0
  libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
  libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgcc-6-dev libgcc1
  libgfortran-6-dev libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev
  libgmp10 libgmpxx4ldbl libgomp1 libicu57 libklu1 liblapack-dev liblapack3
  libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmpdec2 libpipeline1
  libpython-all-dev libpython-dev libpython-stdlib libpython2.7
  libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev
  libpython3.5-minimal libpython3.5-stdlib librbio2 libsigsegv2 libspqr2
  libssl1.1 libstdc++-6-dev libstdc++6 libsuitesparse-dev
  libsuitesparseconfig4 libtimedate-perl libtool libubsan0 libumfpack5
  libunistring0 libxml2 m4 man-db mime-support po-debconf python python-all
  python-all-dev python-decorator python-dev python-funcsigs
  python-functools32 python-jsonschema python-minimal python-mock python-numpy
  python-pbr python-pkg-resources python-py python-pytest python-scipy
  python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
  python3 python3-all python3-all-dev python3-decorator python3-dev
  python3-jsonschema python3-minimal python3-numpy python3-pkg-resources
  python3-py python3-pytest python3-scipy python3-setuptools python3-six
  python3.5 python3.5-dev python3.5-minimal zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican
  | wordlist whois vacation cpp-doc gcc-6-locales cython-doc dh-make gcc-6-doc
  libstdc++6-6-dbg gcc-multilib manpages-dev flex bison gdb gcc-doc
  libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg
  liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg
  libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
  gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man
  liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc
  libmpfr-dev libstdc++-6-doc libtool-doc gcj-jdk m4-doc less www-browser
  libmail-box-perl python-doc python-tk python-funcsigs-doc python-mock-doc
  python-nose python-numpy-dbg python-numpy-doc subversion python-pytest-xdist
  python-scipy-doc python-setuptools-doc python2.7-doc binfmt-support
  python3-doc python3-tk python3-venv python3-nose python3-numpy-dbg
  python3.5-venv python3.5-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  libltdl-dev xml-core libmail-sendmail-perl python-imaging
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
  gettext-base gfortran gfortran-6 groff-base intltool-debian libamd2
  libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbtf1
  libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
  libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran-6-dev
  libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libicu57 libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc
  libmagic1 libmetis5 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  librbio2 libsigsegv2 libspqr2 libssl1.1 libsuitesparse-dev
  libsuitesparseconfig4 libtimedate-perl libtool libumfpack5 libunistring0
  libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev
  python-decorator python-dev python-funcsigs python-functools32
  python-jsonschema python-minimal python-mock python-numpy python-pbr
  python-pkg-resources python-py python-pytest python-scipy python-setuptools
  python-six python2.7 python2.7-dev python2.7-minimal python3 python3-all
  python3-all-dev python3-decorator python3-dev python3-jsonschema
  python3-minimal python3-numpy python3-pkg-resources python3-py
  python3-pytest python3-scipy python3-setuptools python3-six python3.5
  python3.5-dev python3.5-minimal sbuild-build-depends-python-cobra-dummy
  zlib1g-dev
The following packages will be upgraded:
  binutils cpp cpp-6 g++-6 gcc gcc-6 gcc-6-base libasan3 libatomic1 libcc1-0
  libgcc-6-dev libgcc1 libgmp10 libgomp1 libstdc++-6-dev libstdc++6 libubsan0
  zlib1g
18 upgraded, 122 newly installed, 0 to remove and 80 not upgraded.
Need to get 155 MB/155 MB of archives.
After this operation, 352 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZRq8k6/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 6.3.0-5+rpi1 [63.9 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf gcc-6-base armhf 6.3.0-5+rpi1 [178 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:6.3.0-5+rpi1 [38.3 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 6.3.0-5+rpi1 [24.9 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf binutils armhf 2.27.90.20170124-2 [3605 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 6.3.0-5+rpi1 [6838 B]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libasan3 armhf 6.3.0-5+rpi1 [268 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 6.3.0-5+rpi1 [91.6 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf g++-6 armhf 6.3.0-5+rpi1 [5543 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libstdc++-6-dev armhf 6.3.0-5+rpi1 [1442 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libgcc-6-dev armhf 6.3.0-5+rpi1 [512 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf gcc-6 armhf 6.3.0-5+rpi1 [5380 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf cpp-6 armhf 6.3.0-5+rpi1 [5137 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 6.3.0-5+rpi1 [334 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-5 [81.9 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libgmp10 armhf 2:6.1.2+dfsg-1 [188 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-2 [62.2 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.3-1 [566 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.3-1 [1442 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.3-1 [35.3 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.3-1 [2091 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.3-1 [229 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.3-1 [18.6 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.3-1 [21.6 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-3 [221 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-3 [104 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-3 [63.2 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-2 [116 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.2 [806 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-6 [733 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf cpp armhf 4:6.3.0-1 [18.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.25.2~b0-2 [1698 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.25.2~b0-2 [1704 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf gcc armhf 4:6.3.0-1 [5192 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 13 [15.8 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.029-2 [15.3 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.029-2 [9330 B]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-2 [1434 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.3.0-5+rpi1 [166 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.3.0-5+rpi1 [199 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.3.0-5+rpi1 [5418 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.3.0-1 [1350 B]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4 armhf 1:4.5.4-1 [18.5 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libamd2 armhf 1:4.5.4-1 [30.2 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.7.0-1 [14.0 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.7.0-1 [107 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.7.0-1 [19.0 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libbtf1 armhf 1:4.5.4-1 [18.9 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libcamd2 armhf 1:4.5.4-1 [25.4 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libccolamd2 armhf 1:4.5.4-1 [27.1 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libcolamd2 armhf 1:4.5.4-1 [23.9 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.7.0-1 [1503 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libcholmod3 armhf 1:4.5.4-1 [214 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3 armhf 1:4.5.4-1 [47.1 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.2.0-2 [116 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libglpk40 armhf 4.61-1 [330 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-1 [21.5 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.2+dfsg-1 [563 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libklu1 armhf 1:4.5.4-1 [47.6 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libldl2 armhf 1:4.5.4-1 [18.8 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libumfpack5 armhf 1:4.5.4-1 [126 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf librbio2 armhf 1:4.5.4-1 [27.4 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libspqr2 armhf 1:4.5.4-1 [62.6 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.7.0-1 [1483 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.5.4-1 [566 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.61-1 [367 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.13-2 [916 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.13-2 [27.6 MB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.13-2 [20.0 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.13-2 [958 B]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.3-1 [1169 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.3-1 [36.9 MB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.5.3-1 [18.7 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.5.3-1 [960 B]
Get:110 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.13-2 [940 B]
Get:111 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.13-2 [276 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.13-2 [1130 B]
Get:113 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.13-2 [962 B]
Get:114 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.11-1 [13.3 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 1.0.2-3 [13.3 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-3 [11.0 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 33.1.1-1 [166 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-3 [14.4 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.10.0-1 [52.4 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf python-mock all 2.0.0-3 [59.8 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 33.1.1-1 [137 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-6 [32.7 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.12.0-2 [1693 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf python-py all 1.4.32-3 [82.8 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf python-pytest all 3.0.5-2 [182 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 33.1.1-1 [297 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.5.3-1 [934 B]
Get:128 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.3-1 [413 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.5.3-1 [1158 B]
Get:130 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.5.3-1 [962 B]
Get:131 http://172.17.0.1/private stretch-staging/main armhf python3-decorator all 4.0.11-1 [13.3 kB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf python3-jsonschema all 2.5.1-6 [32.5 kB]
Get:133 http://172.17.0.1/private stretch-staging/main armhf python3-numpy armhf 1:1.12.0-2 [1692 kB]
Get:134 http://172.17.0.1/private stretch-staging/main armhf python3-py all 1.4.32-3 [82.9 kB]
Get:135 http://172.17.0.1/private stretch-staging/main armhf python3-pytest all 3.0.5-2 [182 kB]
Get:136 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 33.1.1-1 [215 kB]
Get:137 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-3 [14.4 kB]
Get:138 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.18.1-2 [8094 kB]
Get:139 http://172.17.0.1/private stretch-staging/main armhf python3-scipy armhf 0.18.1-2 [7698 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 155 MB in 43s (3591 kB/s)
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../0-libgomp1_6.3.0-5+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../1-gcc-6-base_6.3.0-5+rpi1_armhf.deb ...
Unpacking gcc-6-base:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Setting up gcc-6-base:armhf (6.3.0-5+rpi1) ...
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a6.3.0-5+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:6.3.0-5+rpi1) over (1:6.2.1-5+rpi1) ...
Setting up libgcc1:armhf (1:6.3.0-5+rpi1) ...
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../00-libcc1-0_6.3.0-5+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../01-binutils_2.27.90.20170124-2_armhf.deb ...
Unpacking binutils (2.27.90.20170124-2) over (2.27.51.20161127-1) ...
Preparing to unpack .../02-libatomic1_6.3.0-5+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../03-libasan3_6.3.0-5+rpi1_armhf.deb ...
Unpacking libasan3:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../04-libubsan0_6.3.0-5+rpi1_armhf.deb ...
Unpacking libubsan0:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../05-g++-6_6.3.0-5+rpi1_armhf.deb ...
Unpacking g++-6 (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../06-libstdc++-6-dev_6.3.0-5+rpi1_armhf.deb ...
Unpacking libstdc++-6-dev:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../07-libgcc-6-dev_6.3.0-5+rpi1_armhf.deb ...
Unpacking libgcc-6-dev:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../08-gcc-6_6.3.0-5+rpi1_armhf.deb ...
Unpacking gcc-6 (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../09-cpp-6_6.3.0-5+rpi1_armhf.deb ...
Unpacking cpp-6 (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Preparing to unpack .../10-libstdc++6_6.3.0-5+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (6.3.0-5+rpi1) over (6.2.1-5+rpi1) ...
Setting up libstdc++6:armhf (6.3.0-5+rpi1) ...
(Reading database ... 13247 files and directories currently installed.)
Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g:armhf (1:1.2.8.dfsg-5) over (1:1.2.8.dfsg-2+b1) ...
Setting up zlib1g:armhf (1:1.2.8.dfsg-5) ...
(Reading database ... 13246 files and directories currently installed.)
Preparing to unpack .../00-libgmp10_2%3a6.1.2+dfsg-1_armhf.deb ...
Unpacking libgmp10:armhf (2:6.1.2+dfsg-1) over (2:6.1.1+dfsg-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../01-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../02-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../03-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../06-libpython2.7-minimal_2.7.13-2_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.13-2) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../07-python2.7-minimal_2.7.13-2_armhf.deb ...
Unpacking python2.7-minimal (2.7.13-2) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../08-python-minimal_2.7.13-2_armhf.deb ...
Unpacking python-minimal (2.7.13-2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../09-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.0-2_armhf.deb ...
Unpacking libexpat1:armhf (2.2.0-2) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../11-libffi6_3.2.1-6_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-6) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../12-libssl1.1_1.1.0c-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.0c-2) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../13-libpython2.7-stdlib_2.7.13-2_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.13-2) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../14-python2.7_2.7.13-2_armhf.deb ...
Unpacking python2.7 (2.7.13-2) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../15-libpython-stdlib_2.7.13-2_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.13-2) ...
Setting up libpython2.7-minimal:armhf (2.7.13-2) ...
Setting up python2.7-minimal (2.7.13-2) ...
Setting up python-minimal (2.7.13-2) ...
Selecting previously unselected package python.
(Reading database ... 14606 files and directories currently installed.)
Preparing to unpack .../0-python_2.7.13-2_armhf.deb ...
Unpacking python (2.7.13-2) ...
Selecting previously unselected package libpython3.5-minimal:armhf.
Preparing to unpack .../1-libpython3.5-minimal_3.5.3-1_armhf.deb ...
Unpacking libpython3.5-minimal:armhf (3.5.3-1) ...
Selecting previously unselected package python3.5-minimal.
Preparing to unpack .../2-python3.5-minimal_3.5.3-1_armhf.deb ...
Unpacking python3.5-minimal (3.5.3-1) ...
Selecting previously unselected package python3-minimal.
Preparing to unpack .../3-python3-minimal_3.5.3-1_armhf.deb ...
Unpacking python3-minimal (3.5.3-1) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../4-libmpdec2_2.4.2-1_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-1) ...
Selecting previously unselected package libpython3.5-stdlib:armhf.
Preparing to unpack .../5-libpython3.5-stdlib_3.5.3-1_armhf.deb ...
Unpacking libpython3.5-stdlib:armhf (3.5.3-1) ...
Selecting previously unselected package python3.5.
Preparing to unpack .../6-python3.5_3.5.3-1_armhf.deb ...
Unpacking python3.5 (3.5.3-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../7-libpython3-stdlib_3.5.3-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.5.3-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../8-dh-python_2.20170125_all.deb ...
Unpacking dh-python (2.20170125) ...
Setting up libssl1.1:armhf (1.1.0c-2) ...
Setting up libpython3.5-minimal:armhf (3.5.3-1) ...
Setting up libexpat1:armhf (2.2.0-2) ...
Setting up python3.5-minimal (3.5.3-1) ...
Setting up python3-minimal (3.5.3-1) ...
Selecting previously unselected package python3.
(Reading database ... 15581 files and directories currently installed.)
Preparing to unpack .../00-python3_3.5.3-1_armhf.deb ...
Unpacking python3 (3.5.3-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.29-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../02-libmagic1_1%3a5.29-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.29-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.29-3_armhf.deb ...
Unpacking file (1:5.29-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.19.8.1-2_armhf.deb ...
Unpacking gettext-base (0.19.8.1-2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../05-libicu57_57.1-5_armhf.deb ...
Unpacking libicu57:armhf (57.1-5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../06-libxml2_2.9.4+dfsg1-2.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2.2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../07-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../08-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../09-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../10-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../11-automake_1%3a1.15-6_all.deb ...
Unpacking automake (1:1.15-6) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../12-autopoint_0.19.8.1-2_all.deb ...
Unpacking autopoint (0.19.8.1-2) ...
Preparing to unpack .../13-cpp_4%3a6.3.0-1_armhf.deb ...
Unpacking cpp (4:6.3.0-1) over (4:6.1.1-1) ...
Selecting previously unselected package cython.
Preparing to unpack .../14-cython_0.25.2~b0-2_armhf.deb ...
Unpacking cython (0.25.2~b0-2) ...
Selecting previously unselected package cython3.
Preparing to unpack .../15-cython3_0.25.2~b0-2_armhf.deb ...
Unpacking cython3 (0.25.2~b0-2) ...
Preparing to unpack .../16-gcc_4%3a6.3.0-1_armhf.deb ...
Removing old gcc doc directory.
Unpacking gcc (4:6.3.0-1) over (4:6.1.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_13_all.deb ...
Unpacking dh-autoreconf (13) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_0.029-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.029-2) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../21-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_0.029-2_all.deb ...
Unpacking dh-strip-nondeterminism (0.029-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../23-libglib2.0-0_2.50.2-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.2-2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../24-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../25-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.19.8.1-2_armhf.deb ...
Unpacking gettext (0.19.8.1-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_10.2.5_all.deb ...
Unpacking debhelper (10.2.5) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../30-libgfortran3_6.3.0-5+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.3.0-5+rpi1) ...
Selecting previously unselected package libgfortran-6-dev:armhf.
Preparing to unpack .../31-libgfortran-6-dev_6.3.0-5+rpi1_armhf.deb ...
Unpacking libgfortran-6-dev:armhf (6.3.0-5+rpi1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../32-gfortran-6_6.3.0-5+rpi1_armhf.deb ...
Unpacking gfortran-6 (6.3.0-5+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../33-gfortran_4%3a6.3.0-1_armhf.deb ...
Unpacking gfortran (4:6.3.0-1) ...
Selecting previously unselected package libsuitesparseconfig4:armhf.
Preparing to unpack .../34-libsuitesparseconfig4_1%3a4.5.4-1_armhf.deb ...
Unpacking libsuitesparseconfig4:armhf (1:4.5.4-1) ...
Selecting previously unselected package libamd2:armhf.
Preparing to unpack .../35-libamd2_1%3a4.5.4-1_armhf.deb ...
Unpacking libamd2:armhf (1:4.5.4-1) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../36-libblas-common_3.7.0-1_armhf.deb ...
Unpacking libblas-common (3.7.0-1) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../37-libblas3_3.7.0-1_armhf.deb ...
Unpacking libblas3 (3.7.0-1) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../38-libblas-dev_3.7.0-1_armhf.deb ...
Unpacking libblas-dev (3.7.0-1) ...
Selecting previously unselected package libbtf1:armhf.
Preparing to unpack .../39-libbtf1_1%3a4.5.4-1_armhf.deb ...
Unpacking libbtf1:armhf (1:4.5.4-1) ...
Selecting previously unselected package libcamd2:armhf.
Preparing to unpack .../40-libcamd2_1%3a4.5.4-1_armhf.deb ...
Unpacking libcamd2:armhf (1:4.5.4-1) ...
Selecting previously unselected package libccolamd2:armhf.
Preparing to unpack .../41-libccolamd2_1%3a4.5.4-1_armhf.deb ...
Unpacking libccolamd2:armhf (1:4.5.4-1) ...
Selecting previously unselected package libcolamd2:armhf.
Preparing to unpack .../42-libcolamd2_1%3a4.5.4-1_armhf.deb ...
Unpacking libcolamd2:armhf (1:4.5.4-1) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../43-liblapack3_3.7.0-1_armhf.deb ...
Unpacking liblapack3 (3.7.0-1) ...
Selecting previously unselected package libmetis5:armhf.
Preparing to unpack .../44-libmetis5_5.1.0.dfsg-5_armhf.deb ...
Unpacking libmetis5:armhf (5.1.0.dfsg-5) ...
Selecting previously unselected package libcholmod3:armhf.
Preparing to unpack .../45-libcholmod3_1%3a4.5.4-1_armhf.deb ...
Unpacking libcholmod3:armhf (1:4.5.4-1) ...
Selecting previously unselected package libcxsparse3:armhf.
Preparing to unpack .../46-libcxsparse3_1%3a4.5.4-1_armhf.deb ...
Unpacking libcxsparse3:armhf (1:4.5.4-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../47-libexpat1-dev_2.2.0-2_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.0-2) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../48-libltdl7_2.4.6-2_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-2) ...
Selecting previously unselected package libglpk40:armhf.
Preparing to unpack .../49-libglpk40_4.61-1_armhf.deb ...
Unpacking libglpk40:armhf (4.61-1) ...
Selecting previously unselected package libgmpxx4ldbl:armhf.
Preparing to unpack .../50-libgmpxx4ldbl_2%3a6.1.2+dfsg-1_armhf.deb ...
Unpacking libgmpxx4ldbl:armhf (2:6.1.2+dfsg-1) ...
Selecting previously unselected package libgmp-dev:armhf.
Preparing to unpack .../51-libgmp-dev_2%3a6.1.2+dfsg-1_armhf.deb ...
Unpacking libgmp-dev:armhf (2:6.1.2+dfsg-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../52-zlib1g-dev_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package libklu1:armhf.
Preparing to unpack .../53-libklu1_1%3a4.5.4-1_armhf.deb ...
Unpacking libklu1:armhf (1:4.5.4-1) ...
Selecting previously unselected package libldl2:armhf.
Preparing to unpack .../54-libldl2_1%3a4.5.4-1_armhf.deb ...
Unpacking libldl2:armhf (1:4.5.4-1) ...
Selecting previously unselected package libumfpack5:armhf.
Preparing to unpack .../55-libumfpack5_1%3a4.5.4-1_armhf.deb ...
Unpacking libumfpack5:armhf (1:4.5.4-1) ...
Selecting previously unselected package librbio2:armhf.
Preparing to unpack .../56-librbio2_1%3a4.5.4-1_armhf.deb ...
Unpacking librbio2:armhf (1:4.5.4-1) ...
Selecting previously unselected package libspqr2:armhf.
Preparing to unpack .../57-libspqr2_1%3a4.5.4-1_armhf.deb ...
Unpacking libspqr2:armhf (1:4.5.4-1) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../58-liblapack-dev_3.7.0-1_armhf.deb ...
Unpacking liblapack-dev (3.7.0-1) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
Preparing to unpack .../59-libsuitesparse-dev_1%3a4.5.4-1_armhf.deb ...
Unpacking libsuitesparse-dev:armhf (1:4.5.4-1) ...
Selecting previously unselected package libglpk-dev:armhf.
Preparing to unpack .../60-libglpk-dev_4.61-1_armhf.deb ...
Unpacking libglpk-dev:armhf (4.61-1) ...
Selecting previously unselected package libpython2.7:armhf.
Preparing to unpack .../61-libpython2.7_2.7.13-2_armhf.deb ...
Unpacking libpython2.7:armhf (2.7.13-2) ...
Selecting previously unselected package libpython2.7-dev:armhf.
Preparing to unpack .../62-libpython2.7-dev_2.7.13-2_armhf.deb ...
Unpacking libpython2.7-dev:armhf (2.7.13-2) ...
Selecting previously unselected package libpython-dev:armhf.
Preparing to unpack .../63-libpython-dev_2.7.13-2_armhf.deb ...
Unpacking libpython-dev:armhf (2.7.13-2) ...
Selecting previously unselected package libpython-all-dev:armhf.
Preparing to unpack .../64-libpython-all-dev_2.7.13-2_armhf.deb ...
Unpacking libpython-all-dev:armhf (2.7.13-2) ...
Selecting previously unselected package libpython3.5:armhf.
Preparing to unpack .../65-libpython3.5_3.5.3-1_armhf.deb ...
Unpacking libpython3.5:armhf (3.5.3-1) ...
Selecting previously unselected package libpython3.5-dev:armhf.
Preparing to unpack .../66-libpython3.5-dev_3.5.3-1_armhf.deb ...
Unpacking libpython3.5-dev:armhf (3.5.3-1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../67-libpython3-dev_3.5.3-1_armhf.deb ...
Unpacking libpython3-dev:armhf (3.5.3-1) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../68-libpython3-all-dev_3.5.3-1_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.5.3-1) ...
Selecting previously unselected package python-all.
Preparing to unpack .../69-python-all_2.7.13-2_armhf.deb ...
Unpacking python-all (2.7.13-2) ...
Selecting previously unselected package python2.7-dev.
Preparing to unpack .../70-python2.7-dev_2.7.13-2_armhf.deb ...
Unpacking python2.7-dev (2.7.13-2) ...
Selecting previously unselected package python-dev.
Preparing to unpack .../71-python-dev_2.7.13-2_armhf.deb ...
Unpacking python-dev (2.7.13-2) ...
Selecting previously unselected package python-all-dev.
Preparing to unpack .../72-python-all-dev_2.7.13-2_armhf.deb ...
Unpacking python-all-dev (2.7.13-2) ...
Selecting previously unselected package python-decorator.
Preparing to unpack .../73-python-decorator_4.0.11-1_all.deb ...
Unpacking python-decorator (4.0.11-1) ...
Selecting previously unselected package python-funcsigs.
Preparing to unpack .../74-python-funcsigs_1.0.2-3_all.deb ...
Unpacking python-funcsigs (1.0.2-3) ...
Selecting previously unselected package python-functools32.
Preparing to unpack .../75-python-functools32_3.2.3.2-3_all.deb ...
Unpacking python-functools32 (3.2.3.2-3) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../76-python-pkg-resources_33.1.1-1_all.deb ...
Unpacking python-pkg-resources (33.1.1-1) ...
Selecting previously unselected package python-six.
Preparing to unpack .../77-python-six_1.10.0-3_all.deb ...
Unpacking python-six (1.10.0-3) ...
Selecting previously unselected package python-pbr.
Preparing to unpack .../78-python-pbr_1.10.0-1_all.deb ...
Unpacking python-pbr (1.10.0-1) ...
Selecting previously unselected package python-mock.
Preparing to unpack .../79-python-mock_2.0.0-3_all.deb ...
Unpacking python-mock (2.0.0-3) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../80-python3-pkg-resources_33.1.1-1_all.deb ...
Unpacking python3-pkg-resources (33.1.1-1) ...
Selecting previously unselected package python-jsonschema.
Preparing to unpack .../81-python-jsonschema_2.5.1-6_all.deb ...
Unpacking python-jsonschema (2.5.1-6) ...
Selecting previously unselected package python-numpy.
Preparing to unpack .../82-python-numpy_1%3a1.12.0-2_armhf.deb ...
Unpacking python-numpy (1:1.12.0-2) ...
Selecting previously unselected package python-py.
Preparing to unpack .../83-python-py_1.4.32-3_all.deb ...
Unpacking python-py (1.4.32-3) ...
Selecting previously unselected package python-pytest.
Preparing to unpack .../84-python-pytest_3.0.5-2_all.deb ...
Unpacking python-pytest (3.0.5-2) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../85-python-setuptools_33.1.1-1_all.deb ...
Unpacking python-setuptools (33.1.1-1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../86-python3-all_3.5.3-1_armhf.deb ...
Unpacking python3-all (3.5.3-1) ...
Selecting previously unselected package python3.5-dev.
Preparing to unpack .../87-python3.5-dev_3.5.3-1_armhf.deb ...
Unpacking python3.5-dev (3.5.3-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../88-python3-dev_3.5.3-1_armhf.deb ...
Unpacking python3-dev (3.5.3-1) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../89-python3-all-dev_3.5.3-1_armhf.deb ...
Unpacking python3-all-dev (3.5.3-1) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../90-python3-decorator_4.0.11-1_all.deb ...
Unpacking python3-decorator (4.0.11-1) ...
Selecting previously unselected package python3-jsonschema.
Preparing to unpack .../91-python3-jsonschema_2.5.1-6_all.deb ...
Unpacking python3-jsonschema (2.5.1-6) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../92-python3-numpy_1%3a1.12.0-2_armhf.deb ...
Unpacking python3-numpy (1:1.12.0-2) ...
Selecting previously unselected package python3-py.
Preparing to unpack .../93-python3-py_1.4.32-3_all.deb ...
Unpacking python3-py (1.4.32-3) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../94-python3-pytest_3.0.5-2_all.deb ...
Unpacking python3-pytest (3.0.5-2) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../95-python3-setuptools_33.1.1-1_all.deb ...
Unpacking python3-setuptools (33.1.1-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../96-python3-six_1.10.0-3_all.deb ...
Unpacking python3-six (1.10.0-3) ...
Selecting previously unselected package python-scipy.
Preparing to unpack .../97-python-scipy_0.18.1-2_armhf.deb ...
Unpacking python-scipy (0.18.1-2) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../98-python3-scipy_0.18.1-2_armhf.deb ...
Unpacking python3-scipy (0.18.1-2) ...
Selecting previously unselected package sbuild-build-depends-python-cobra-dummy.
Preparing to unpack .../99-sbuild-build-depends-python-cobra-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Setting up libgomp1:armhf (6.3.0-5+rpi1) ...
Setting up libatomic1:armhf (6.3.0-5+rpi1) ...
Setting up libcc1-0:armhf (6.3.0-5+rpi1) ...
Setting up libasan3:armhf (6.3.0-5+rpi1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libblas-common (3.7.0-1) ...
Setting up libubsan0:armhf (6.3.0-5+rpi1) ...
Setting up libgfortran3:armhf (6.3.0-5+rpi1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libsuitesparseconfig4:armhf (1:4.5.4-1) ...
Setting up gettext-base (0.19.8.1-2) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.2) ...
Setting up libmagic-mgc (1:5.29-3) ...
Setting up libmagic1:armhf (1:5.29-3) ...
Setting up libamd2:armhf (1:4.5.4-1) ...
Setting up libgmp10:armhf (2:6.1.2+dfsg-1) ...
Setting up libblas3 (3.7.0-1) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libmetis5:armhf (5.1.0.dfsg-5) ...
Setting up libltdl7:armhf (2.4.6-2) ...
Setting up libcolamd2:armhf (1:4.5.4-1) ...
Setting up libexpat1-dev:armhf (2.2.0-2) ...
Setting up libccolamd2:armhf (1:4.5.4-1) ...
Setting up binutils (2.27.90.20170124-2) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up cpp-6 (6.3.0-5+rpi1) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.1.2+dfsg-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.13-2) ...
Setting up autopoint (0.19.8.1-2) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.029-2) ...
Setting up libbtf1:armhf (1:4.5.4-1) ...
Setting up libldl2:armhf (1:4.5.4-1) ...
Setting up libgmp-dev:armhf (2:6.1.2+dfsg-1) ...
Setting up cpp (4:6.3.0-1) ...
Setting up libcxsparse3:armhf (1:4.5.4-1) ...
Setting up libgcc-6-dev:armhf (6.3.0-5+rpi1) ...
Setting up libstdc++-6-dev:armhf (6.3.0-5+rpi1) ...
Setting up libglpk40:armhf (4.61-1) ...
Setting up liblapack3 (3.7.0-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up libpython3.5-stdlib:armhf (3.5.3-1) ...
Setting up librbio2:armhf (1:4.5.4-1) ...
Setting up libcamd2:armhf (1:4.5.4-1) ...
Setting up libgfortran-6-dev:armhf (6.3.0-5+rpi1) ...
Setting up libklu1:armhf (1:4.5.4-1) ...
Setting up python2.7 (2.7.13-2) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-3) ...
Setting up libcholmod3:armhf (1:4.5.4-1) ...
Setting up gcc-6 (6.3.0-5+rpi1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up g++-6 (6.3.0-5+rpi1) ...
Setting up libpython-stdlib:armhf (2.7.13-2) ...
Setting up libpython2.7:armhf (2.7.13-2) ...
Setting up automake (1:1.15-6) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.13-2) ...
Setting up python2.7-dev (2.7.13-2) ...
Setting up python (2.7.13-2) ...
Setting up libspqr2:armhf (1:4.5.4-1) ...
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.3-1) ...
Setting up libpython3-stdlib:armhf (3.5.3-1) ...
Setting up libpython-dev:armhf (2.7.13-2) ...
Setting up gfortran-6 (6.3.0-5+rpi1) ...
Setting up python-functools32 (3.2.3.2-3) ...
Setting up gettext (0.19.8.1-2) ...
Setting up libpython3.5:armhf (3.5.3-1) ...
Setting up python-dev (2.7.13-2) ...
Setting up libpython-all-dev:armhf (2.7.13-2) ...
Setting up libumfpack5:armhf (1:4.5.4-1) ...
Setting up gcc (4:6.3.0-1) ...
Setting up python-pkg-resources (33.1.1-1) ...
Setting up libpython3.5-dev:armhf (3.5.3-1) ...
Setting up python-numpy (1:1.12.0-2) ...
Setting up cython (0.25.2~b0-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up python-six (1.10.0-3) ...
Setting up python-pbr (1.10.0-1) ...
update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode
Setting up python-funcsigs (1.0.2-3) ...
Setting up python-decorator (4.0.11-1) ...
Setting up python3.5-dev (3.5.3-1) ...
Setting up python-all (2.7.13-2) ...
Setting up libpython3-dev:armhf (3.5.3-1) ...
Setting up gfortran (4:6.3.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up python-setuptools (33.1.1-1) ...
Setting up python-scipy (0.18.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libblas-dev (3.7.0-1) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up python-py (1.4.32-3) ...
Setting up python-mock (2.0.0-3) ...
Setting up python-pytest (3.0.5-2) ...
Setting up python-all-dev (2.7.13-2) ...
Setting up libpython3-all-dev:armhf (3.5.3-1) ...
Setting up liblapack-dev (3.7.0-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libsuitesparse-dev:armhf (1:4.5.4-1) ...
Setting up libglpk-dev:armhf (4.61-1) ...
Setting up python3 (3.5.3-1) ...
Setting up python3-numpy (1:1.12.0-2) ...
Setting up python3-six (1.10.0-3) ...
Setting up python3-dev (3.5.3-1) ...
Setting up python3-pkg-resources (33.1.1-1) ...
Setting up python3-jsonschema (2.5.1-6) ...
update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up dh-strip-nondeterminism (0.029-2) ...
Setting up python3-all (3.5.3-1) ...
Setting up cython3 (0.25.2~b0-2) ...
Setting up python3-setuptools (33.1.1-1) ...
Setting up dh-python (2.20170125) ...
Setting up python3-decorator (4.0.11-1) ...
Setting up debhelper (10.2.5) ...
Setting up python-jsonschema (2.5.1-6) ...
update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up python3-scipy (0.18.1-2) ...
Setting up dh-autoreconf (13) ...
Setting up python3-py (1.4.32-3) ...
Setting up python3-all-dev (3.5.3-1) ...
Setting up python3-pytest (3.0.5-2) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.90.20170124-2 dpkg-dev_1.18.15 g++-6_6.3.0-5+rpi1 gcc-6_6.3.0-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-6-dev_6.3.0-5+rpi1 libstdc++6_6.3.0-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-6 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.90.20170124-2 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.3.0-1 cpp-6_6.3.0-5+rpi1 cython_0.25.2~b0-2 cython3_0.25.2~b0-2 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.5 debianutils_4.8.1 dh-autoreconf_13 dh-python_2.20170125 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-3 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.3.0-5+rpi1 gcc_4:6.3.0-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.3.0-5+rpi1 gcc-6-base_6.3.0-5+rpi1 gettext_0.19.8.1-2 gettext-base_0.19.8.1-2 gfortran_4:6.3.0-1 gfortran-6_6.3.0-5+rpi1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 kbd_2.0.3-2 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libamd2_1:4.5.4-1 libapparmor1_2.10.95-6 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan3_6.3.0-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.3.0-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.7.0-1 libblas-dev_3.7.0-1 libblas3_3.7.0-1 libblkid1_2.29-1 libbsd0_0.8.3-1 libbtf1_1:4.5.4-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcamd2_1:4.5.4-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.3.0-5+rpi1 libccolamd2_1:4.5.4-1 libcholmod3_1:4.5.4-1 libcolamd2_1:4.5.4-1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libcxsparse3_1:4.5.4-1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libexpat1_2.2.0-2 libexpat1-dev_2.2.0-2 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.3.0-5+rpi1 libgcc1_1:6.3.0-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libgfortran-6-dev_6.3.0-5+rpi1 libgfortran3_6.3.0-5+rpi1 libglib2.0-0_2.50.2-2 libglpk-dev_4.61-1 libglpk40_4.61-1 libgmp-dev_2:6.1.2+dfsg-1 libgmp10_2:6.1.2+dfsg-1 libgmpxx4ldbl_2:6.1.2+dfsg-1 libgomp1_6.3.0-5+rpi1 libgpg-error0_1.25-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libklu1_1:4.5.4-1 libkmod2_23-1 libksba8_1.3.5-2 liblapack-dev_3.7.0-1 liblapack3_3.7.0-1 libldl2_1:4.5.4-1 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-3 libmagic1_1:5.29-3 libmetis5_5.1.0.dfsg-5 libmount1_2.29-1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnpth0_1.3-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.13-2 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-all-dev_3.5.3-1 libpython3-dev_3.5.3-1 libpython3-stdlib_3.5.3-1 libpython3.5_3.5.3-1 libpython3.5-dev_3.5.3-1 libpython3.5-minimal_3.5.3-1 libpython3.5-stdlib_3.5.3-1 librbio2_1:4.5.4-1 libreadline7_7.0-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libsmartcols1_2.29-1 libspqr2_1:4.5.4-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssl1.1_1.1.0c-2 libstdc++-6-dev_6.3.0-5+rpi1 libstdc++6_6.3.0-5+rpi1 libsuitesparse-dev_1:4.5.4-1 libsuitesparseconfig4_1:4.5.4-1 libsystemd0_232-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.3.0-5+rpi1 libudev1_232-6 libumfpack5_1:4.5.4-1 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.29-1 multiarch-support_2.24-7+rpi1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 netbase_5.3 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 psmisc_22.21-2.1 python_2.7.13-2 python-all_2.7.13-2 python-all-dev_2.7.13-2 python-decorator_4.0.11-1 python-dev_2.7.13-2 python-funcsigs_1.0.2-3 python-functools32_3.2.3.2-3 python-jsonschema_2.5.1-6 python-minimal_2.7.13-2 python-mock_2.0.0-3 python-numpy_1:1.12.0-2 python-pbr_1.10.0-1 python-pkg-resources_33.1.1-1 python-py_1.4.32-3 python-pytest_3.0.5-2 python-scipy_0.18.1-2 python-setuptools_33.1.1-1 python-six_1.10.0-3 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-1 python3-all_3.5.3-1 python3-all-dev_3.5.3-1 python3-decorator_4.0.11-1 python3-dev_3.5.3-1 python3-jsonschema_2.5.1-6 python3-minimal_3.5.3-1 python3-numpy_1:1.12.0-2 python3-pkg-resources_33.1.1-1 python3-py_1.4.32-3 python3-pytest_3.0.5-2 python3-scipy_0.18.1-2 python3-setuptools_33.1.1-1 python3-six_1.10.0-3 python3.5_3.5.3-1 python3.5-dev_3.5.3-1 python3.5-minimal_3.5.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 25 09:25:22 2017 UTC
gpgv:                using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.5.9-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.5.9.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.5.9-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying exclude-pytest-benchmark.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-3ad25276-983f-41cf-b634-9f7685bf0a1f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.5.9-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build python-cobra-0.5.9
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/cobra
creating build/temp.linux-armhf-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armhf-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armhf-3.5
creating build/temp.linux-armhf-3.5/cobra
creating build/temp.linux-armhf-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armhf-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build; python2.7 -m pytest 
============================= test session starts ==============================
platform linux2 -- Python 2.7.13, pytest-3.0.5, py-1.4.32, pluggy-0.4.0
rootdir: /<<PKGBUILDDIR>>, inifile: 
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py:24: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py:12: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
collected 149 items

cobra/test/test_design.py ....
cobra/test/test_dictlist.py ...................
cobra/test/test_flux_analysis.py ..s........ss
cobra/test/test_io.py ............ssssssss.x.x.xxx.............ssssss.ss...ss.......
cobra/test/test_manipulation.py ............
cobra/test/test_model.py ...........................
cobra/test/test_solvers.py ...........s

============== 122 passed, 22 skipped, 5 xfailed in 61.89 seconds ==============
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.5.3, pytest-3.0.5, py-1.4.32, pluggy-0.4.0
rootdir: /<<PKGBUILDDIR>>, inifile: 
collected 149 items

cobra/test/test_design.py ....
cobra/test/test_dictlist.py ...................
cobra/test/test_flux_analysis.py ..s........ss
cobra/test/test_io.py ............ssssssss.x.x.xxx........ssss.ssssss.ss...ss....s..
cobra/test/test_manipulation.py ............
cobra/test/test_model.py ...........................
cobra/test/test_solvers.py ...........s

============== 117 passed, 27 skipped, 5 xfailed in 66.79 seconds ==============
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py:24: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py:12: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armhf-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_design.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/conftest.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_design.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_dictlist.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_flux_analysis.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_io.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_manipulation.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_model.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_solvers.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py to summary.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/conftest.py to conftest.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_design.py to test_design.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_dictlist.py to test_dictlist.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_manipulation.py to test_manipulation.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_solvers.py to test_solvers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_model.py to test_model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_flux_analysis.py to test_flux_analysis.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_io.py to test_io.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armhf-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/DictList.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Object.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Gene.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Species.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Metabolite.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Reaction.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Solution.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Model.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/ArrayBasedModel.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Formula.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__pycache__/design_algorithms.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/essentiality.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/moma.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/variability.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/single_deletion.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/loopless.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/double_deletion.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/deletion_worker.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/sbml3.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/json.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/mat.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/delete.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/modify.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/annotate.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/validate.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/esolver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/wrappers.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/cplex_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/parameters.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/glpk_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/mosek.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/cplex_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/gurobi_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/glpk_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/coin.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/gurobi_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/conftest.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_design.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_dictlist.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_flux_analysis.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_io.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_manipulation.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_model.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_solvers.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__pycache__/version.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/conftest.py to conftest.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_design.py to test_design.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_dictlist.py to test_dictlist.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_solvers.py to test_solvers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_model.py to test_model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_flux_analysis.py to test_flux_analysis.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_io.py to test_io.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing dependency_links to cobra.egg-info/dependency_links.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing requirements to cobra.egg-info/requires.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.5.9.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:322: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.5.9-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.5.9-1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.5.9-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.5.9-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.5.9-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.5.9
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-02-05T13:20:23Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.5.9-1_armhf.changes:
-----------------------------------

Format: 1.8
Date: Wed, 25 Jan 2017 01:22:48 -0800
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.5.9-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@debian.org>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.5.9-1) unstable; urgency=medium
 .
   * New upstream release
   * Refresh patch
Checksums-Sha1:
 e848d1cd6f65324ba212f9ce551fce24d068aaa1 155358 python-cobra-dbgsym_0.5.9-1_armhf.deb
 cda056d6c634c536d340963ed41c6c4fc2f11b2f 7605 python-cobra_0.5.9-1_armhf.buildinfo
 99431f4c2cdfcfa2d4fbafe6a0de93e69f726e71 163592 python-cobra_0.5.9-1_armhf.deb
 17ed67052e9614f5f61977fad7823ab6be4877f7 182782 python3-cobra-dbgsym_0.5.9-1_armhf.deb
 108acfe5b9f75d2bdcb370e36244ad61e7189248 156920 python3-cobra_0.5.9-1_armhf.deb
Checksums-Sha256:
 a8eb6126e8a3b7002a3b8214d98e5c29bafc0c35f8f1c3d90843bd697a180a08 155358 python-cobra-dbgsym_0.5.9-1_armhf.deb
 00ab3a617838b068a972baae96358ca64d2b3a5ad3929542159db33af9d6eba0 7605 python-cobra_0.5.9-1_armhf.buildinfo
 0db851648fb28ff174df81673bab2a9cb33a676e2291656c7f6a70001266778f 163592 python-cobra_0.5.9-1_armhf.deb
 1ca272abb069ab7d250bca82fbb6b435136793c9e8a92d80d587c63998c7c8fc 182782 python3-cobra-dbgsym_0.5.9-1_armhf.deb
 4451dce2e845fb4f1496c88af5555c3740fd4483a06614320a94806afe8d1d0e 156920 python3-cobra_0.5.9-1_armhf.deb
Files:
 ae8bd06f2255c995d5dda13ccd7ee4fc 155358 debug extra python-cobra-dbgsym_0.5.9-1_armhf.deb
 edc5057939e9d8b5e1dd99b964b17c5f 7605 python optional python-cobra_0.5.9-1_armhf.buildinfo
 7ceaac59816c8d9bed93f43ce0c521eb 163592 python optional python-cobra_0.5.9-1_armhf.deb
 a1a26d80af3e28f1023935aa3befee0c 182782 debug extra python3-cobra-dbgsym_0.5.9-1_armhf.deb
 1d57ebb02fe044037f2166c7603b25e7 156920 python optional python3-cobra_0.5.9-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python-cobra-dbgsym_0.5.9-1_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 155358 bytes: control archive=489 bytes.
     433 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-cobra-dbgsym
 Source: python-cobra
 Version: 0.5.9-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 190
 Depends: python-cobra (= 0.5.9-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 9c54c05aa8e46e5b17ef5e0d40e6e39177fd359a

drwxr-xr-x root/root         0 2017-01-25 09:22 ./
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/.build-id/9c/
-rw-r--r-- root/root    183828 2017-01-25 09:22 ./usr/lib/debug/.build-id/9c/54c05aa8e46e5b17ef5e0d40e6e39177fd359a.debug
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-01-25 09:22 ./usr/share/doc/python-cobra-dbgsym -> python-cobra


python-cobra_0.5.9-1_armhf.deb
------------------------------

 new debian package, version 2.0.
 size 163592 bytes: control archive=3195 bytes.
    1094 bytes,    21 lines      control              
    6540 bytes,    70 lines      md5sums              
     162 bytes,     9 lines   *  postinst             #!/bin/sh
     261 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Version: 0.5.9-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 767
 Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python (<< 2.8), python (>= 2.7~), python-six, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-cobra-data (= 0.5.9-1)
 Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
 Suggests: python-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

drwxr-xr-x root/root         0 2017-01-25 09:22 ./
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/
-rw-r--r-- root/root     12122 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/dependency_links.txt
-rw-r--r-- root/root       320 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/requires.txt
-rw-r--r-- root/root         6 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/top_level.txt
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/
-rw-r--r-- root/root         6 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/VERSION
-rw-r--r-- root/root       927 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/core/
-rw-r--r-- root/root     16537 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root     12280 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root      5237 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root      6926 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      8717 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     15378 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root       650 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     26634 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root      1232 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root      1241 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root       442 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/design/
-rw-r--r-- root/root        33 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/design/__init__.py
-rw-r--r-- root/root     16525 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       673 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root      5996 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root     23281 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root      2967 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root      7069 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root      2519 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root      4432 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root      3730 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root     12577 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root      8204 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root      7065 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      9092 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root      4362 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/io/
-rw-r--r-- root/root       701 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root      9772 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/io/json.py
-rw-r--r-- root/root     10644 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root     32009 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root     29063 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/manipulation/
-rw-r--r-- root/root       414 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root       834 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root      8310 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root     14568 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root      2111 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/solvers/
-rw-r--r-- root/root      4103 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root    189236 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so
-rw-r--r-- root/root      4233 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root     13257 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root     11786 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
-rw-r--r-- root/root      6286 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root      9664 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root     14272 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
-rw-r--r-- root/root     10511 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root     10671 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
-rw-r--r-- root/root      8626 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root      7741 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root      1114 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/
-rw-r--r-- root/root      1499 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/__init__.py
-rw-r--r-- root/root      1107 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/test/conftest.py
lrwxrwxrwx root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root      2562 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/test/test_design.py
-rw-r--r-- root/root      9741 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/test/test_dictlist.py
-rw-r--r-- root/root     16470 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/test_flux_analysis.py
-rw-r--r-- root/root      8512 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/test_io.py
-rw-r--r-- root/root     11942 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/test/test_manipulation.py
-rw-r--r-- root/root     24358 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/test/test_model.py
-rw-r--r-- root/root     11396 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/test/test_solvers.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python2.7/dist-packages/cobra/topology/
-rw-r--r-- root/root       251 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6564 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2017-01-19 13:12 ./usr/lib/python2.7/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/python-cobra/
-rw-r--r-- root/root      1922 2017-01-19 13:12 ./usr/share/doc/python-cobra/README.rst.gz
-rw-r--r-- root/root      1587 2017-01-25 09:22 ./usr/share/doc/python-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2062 2016-11-19 05:54 ./usr/share/doc/python-cobra/copyright


python3-cobra-dbgsym_0.5.9-1_armhf.deb
--------------------------------------

 new debian package, version 2.0.
 size 182782 bytes: control archive=494 bytes.
     436 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-cobra-dbgsym
 Source: python-cobra
 Version: 0.5.9-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 217
 Depends: python3-cobra (= 0.5.9-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python3-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 38631f6f81cba8e3cc0ad9fe082fc5686275ad8f

drwxr-xr-x root/root         0 2017-01-25 09:22 ./
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/debug/.build-id/38/
-rw-r--r-- root/root    211388 2017-01-25 09:22 ./usr/lib/debug/.build-id/38/631f6f81cba8e3cc0ad9fe082fc5686275ad8f.debug
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-01-25 09:22 ./usr/share/doc/python3-cobra-dbgsym -> python3-cobra


python3-cobra_0.5.9-1_armhf.deb
-------------------------------

 new debian package, version 2.0.
 size 156920 bytes: control archive=3168 bytes.
    1086 bytes,    22 lines      control              
    6048 bytes,    66 lines      md5sums              
     165 bytes,     9 lines   *  postinst             #!/bin/sh
     401 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.5.9-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 720
 Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python3 (<< 3.6), python3 (>= 3.5~), python3-six, python3:any (>= 3.3.2-2~), python-cobra-data (= 0.5.9-1)
 Recommends: python3-numpy, python3-scipy, python3-pandas
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

drwxr-xr-x root/root         0 2017-01-25 09:22 ./
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra-0.5.9.egg-info/
-rw-r--r-- root/root     12122 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra-0.5.9.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra-0.5.9.egg-info/dependency_links.txt
-rw-r--r-- root/root       320 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra-0.5.9.egg-info/requires.txt
-rw-r--r-- root/root         6 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra-0.5.9.egg-info/top_level.txt
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root         6 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/VERSION
-rw-r--r-- root/root       927 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root     16537 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root     12280 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root      5237 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root      6926 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      8717 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     15378 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root       650 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     26634 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root      1232 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root      1241 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root       442 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/design/
-rw-r--r-- root/root        33 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/design/__init__.py
-rw-r--r-- root/root     16525 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/design/design_algorithms.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       673 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root      5996 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root     23281 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root      2967 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root      7069 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root      2519 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root      4432 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root      3730 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root     12577 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root      8204 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root      7065 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      9092 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root      4362 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root       701 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root      9772 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root     10644 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root     32009 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root     29063 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root       414 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root       834 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root      8310 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root     14568 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root      2111 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/solvers/
-rw-r--r-- root/root      4103 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root    181116 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
-rw-r--r-- root/root      4233 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root     13257 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root      6286 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root      9664 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root     10511 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root      8626 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root      7741 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root      1114 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/
-rw-r--r-- root/root      1499 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/__init__.py
-rw-r--r-- root/root      1107 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/test/conftest.py
lrwxrwxrwx root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root      2562 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/test/test_design.py
-rw-r--r-- root/root      9741 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/test/test_dictlist.py
-rw-r--r-- root/root     16470 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/test_flux_analysis.py
-rw-r--r-- root/root      8512 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/test_io.py
-rw-r--r-- root/root     11942 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/test/test_manipulation.py
-rw-r--r-- root/root     24358 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/test/test_model.py
-rw-r--r-- root/root     11396 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/test/test_solvers.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/lib/python3/dist-packages/cobra/topology/
-rw-r--r-- root/root       251 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6564 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2017-01-19 13:12 ./usr/lib/python3/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-01-25 09:22 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root      1587 2017-01-25 09:22 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2062 2016-11-19 05:54 ./usr/share/doc/python3-cobra/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 41472
Build-Time: 518
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 1137
Job: python-cobra_0.5.9-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1703
Source-Version: 0.5.9-1
Space: 41472
Status: successful
Version: 0.5.9-1
--------------------------------------------------------------------------------
Finished at 2017-02-05T13:20:23Z
Build needed 00:28:23, 41472k disc space