Raspbian Package Auto-Building

python-cobra → 0.5.6-1 → armhf → 2016-12-05 14:55:36

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| python-cobra 0.5.6-1 (armhf)                 Mon, 05 Dec 2016 14:34:59 +0000 |
+==============================================================================+

Package: python-cobra
Version: 0.5.6-1
Source Version: 0.5.6-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-7795ce34-9143-4a73-85ed-d4e4b9c9c352' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9566 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.5 MB]
Fetched 21.1 MB in 26s (806 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-cobra.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2703 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.6-1 (dsc) [2424 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.6-1 (tar) [2692 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.5.6-1 (diff) [8136 B]
Fetched 2703 kB in 0s (3237 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-RAWg9C/python-cobra-0.5.6' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-RAWg9C' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-OwT0yj/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-OwT0yj/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-OwT0yj/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3150 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 13 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13236 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-pytest, python3-pytest, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
Filtered Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-pytest, python3-pytest, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-OwT0yj/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ Packages [670 B]
Fetched 2591 B in 0s (4140 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
  gettext-base gfortran gfortran-6 groff-base intltool-debian libamd2
  libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbtf1
  libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
  libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran-6-dev
  libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libicu57 libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc
  libmagic1 libmetis5 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  librbio2 libsigsegv2 libspqr2 libssl1.0.2 libsuitesparse-dev
  libsuitesparseconfig4 libtimedate-perl libtool libumfpack5 libunistring0
  libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev
  python-decorator python-dev python-funcsigs python-functools32
  python-jsonschema python-minimal python-mock python-numpy python-pbr
  python-pkg-resources python-py python-pytest python-scipy python-setuptools
  python-six python2.7 python2.7-dev python2.7-minimal python3 python3-all
  python3-all-dev python3-decorator python3-dev python3-jsonschema
  python3-minimal python3-numpy python3-pkg-resources python3-py
  python3-pytest python3-scipy python3-setuptools python3-six python3.5
  python3.5-dev python3.5-minimal zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff
  liblapack-doc-man liblapack-doc libiodbc2-dev default-libmysqlclient-dev
  gmp-doc libgmp10-doc libmpfr-dev libtool-doc gcj-jdk less www-browser
  libmail-box-perl python-doc python-tk python-funcsigs-doc python-mock-doc
  python-nose python-numpy-dbg python-numpy-doc subversion python-pytest-xdist
  python-scipy-doc python-setuptools-doc python2.7-doc binfmt-support
  python3-doc python3-tk python3-venv python3-nose python3-numpy-dbg
  python3.5-venv python3.5-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  libltdl-dev xml-core libmail-sendmail-perl python-imaging
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
  gettext-base gfortran gfortran-6 groff-base intltool-debian libamd2
  libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbtf1
  libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
  libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran-6-dev
  libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libicu57 libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc
  libmagic1 libmetis5 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  librbio2 libsigsegv2 libspqr2 libssl1.0.2 libsuitesparse-dev
  libsuitesparseconfig4 libtimedate-perl libtool libumfpack5 libunistring0
  libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev
  python-decorator python-dev python-funcsigs python-functools32
  python-jsonschema python-minimal python-mock python-numpy python-pbr
  python-pkg-resources python-py python-pytest python-scipy python-setuptools
  python-six python2.7 python2.7-dev python2.7-minimal python3 python3-all
  python3-all-dev python3-decorator python3-dev python3-jsonschema
  python3-minimal python3-numpy python3-pkg-resources python3-py
  python3-pytest python3-scipy python3-setuptools python3-six python3.5
  python3.5-dev python3.5-minimal sbuild-build-depends-python-cobra-dummy
  zlib1g-dev
0 upgraded, 122 newly installed, 0 to remove and 13 not upgraded.
Need to get 130 MB/131 MB of archives.
After this operation, 347 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OwT0yj/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [874 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-2 [971 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-7 [389 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-7 [1177 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-7 [1853 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-7 [284 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.2-8 [566 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.2-8 [1443 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-4 [35.3 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.2-8 [2090 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.2-8 [227 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-4 [18.6 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20160818 [83.0 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-4 [21.7 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.12-7 [914 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-2 [1452 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.23.4+git4-g7eed8d8-2 [1461 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.0-13+rpi1 [166 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.0-13+rpi1 [199 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.0-13+rpi1 [5406 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.1.1-1 [1370 B]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4 armhf 1:4.5.3-2 [18.5 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libamd2 armhf 1:4.5.3-2 [30.2 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libbtf1 armhf 1:4.5.3-2 [18.9 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libcamd2 armhf 1:4.5.3-2 [25.4 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libccolamd2 armhf 1:4.5.3-2 [27.0 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libcolamd2 armhf 1:4.5.3-2 [23.8 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libcholmod3 armhf 1:4.5.3-2 [214 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3 armhf 1:4.5.3-2 [47.0 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.2.0-1 [117 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libglpk40 armhf 4.60-3 [330 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.1+dfsg-1 [21.5 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.1+dfsg-1 [561 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libklu1 armhf 1:4.5.3-2 [47.4 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libldl2 armhf 1:4.5.3-2 [18.7 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libumfpack5 armhf 1:4.5.3-2 [127 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf librbio2 armhf 1:4.5.3-2 [27.3 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libspqr2 armhf 1:4.5.3-2 [62.6 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.5.3-2 [566 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.60-3 [366 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.12-7 [27.6 MB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-2 [19.8 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-2 [958 B]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.2-8 [1168 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.2-8 [36.9 MB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.5.1-4 [18.7 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.5.1-4 [960 B]
Get:91 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-2 [940 B]
Get:92 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.12-7 [278 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-2 [1132 B]
Get:94 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-2 [964 B]
Get:95 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 1.0.2-3 [13.3 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-3 [11.0 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 28.7.1-1 [164 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-3 [14.4 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.10.0-1 [52.4 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf python-mock all 2.0.0-3 [59.8 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 28.7.1-1 [135 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-6 [32.7 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.11.2-1 [1606 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf python-py all 1.4.31-2 [82.0 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf python-pytest all 3.0.4-1 [181 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 28.7.1-1 [218 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.5.1-4 [932 B]
Get:109 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.2-8 [413 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.5.1-4 [1164 B]
Get:111 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.5.1-4 [958 B]
Get:112 http://172.17.0.1/private stretch-staging/main armhf python3-decorator all 4.0.6-1 [12.8 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf python3-jsonschema all 2.5.1-6 [32.5 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf python3-numpy armhf 1:1.11.2-1 [1603 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf python3-py all 1.4.31-2 [82.1 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf python3-pytest all 3.0.4-1 [181 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 28.7.1-1 [137 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-3 [14.4 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.18.1-2 [8094 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf python3-scipy armhf 0.18.1-2 [7698 kB]
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Setting up python-numpy (1:1.11.2-1) ...
Setting up cython (0.23.4+git4-g7eed8d8-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
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Setting up python-funcsigs (1.0.2-3) ...
Setting up python-decorator (4.0.6-1) ...
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Setting up python-scipy (0.18.1-2) ...
Setting up po-debconf (1.0.20) ...
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Setting up python-pytest (3.0.4-1) ...
Setting up python-all-dev (2.7.11-2) ...
Setting up libpython3-all-dev:armhf (3.5.1-4) ...
Setting up libsuitesparse-dev:armhf (1:4.5.3-2) ...
Setting up libglpk-dev:armhf (4.60-3) ...
Setting up python3 (3.5.1-4) ...
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Setting up python3-pkg-resources (28.7.1-1) ...
Setting up python3-jsonschema (2.5.1-6) ...
update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up python3-all (3.5.1-4) ...
Setting up cython3 (0.23.4+git4-g7eed8d8-2) ...
Setting up python3-setuptools (28.7.1-1) ...
Setting up dh-python (2.20160818) ...
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Setting up debhelper (10.2.2) ...
Setting up python-jsonschema (2.5.1-6) ...
update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up python3-scipy (0.18.1-2) ...
Setting up dh-autoreconf (12) ...
Setting up python3-py (1.4.31-2) ...
Setting up python3-all-dev (3.5.1-4) ...
Setting up python3-pytest (3.0.4-1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.0-13+rpi1 gcc-6_6.2.0-13+rpi1 libc6-dev_2.24-5+rpi1 libstdc++-6-dev_6.2.0-13+rpi1 libstdc++6_6.2.0-13+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3.1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.6+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.2.0-13+rpi1 cython_0.23.4+git4-g7eed8d8-2 cython3_0.23.4+git4-g7eed8d8-2 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.0-13+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.0-13+rpi1 gcc-6-base_6.2.0-13+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-13+rpi1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 kbd_2.0.3-2 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libamd2_1:4.5.3-2 libapparmor1_2.10.95-6 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-13+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.0-13+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.29-1 libbsd0_0.8.3-1 libbtf1_1:4.5.3-2 libbz2-1.0_1.0.6-8 libc-bin_2.24-5+rpi1 libc-dev-bin_2.24-5+rpi1 libc6_2.24-5+rpi1 libc6-dev_2.24-5+rpi1 libcamd2_1:4.5.3-2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-13+rpi1 libccolamd2_1:4.5.3-2 libcholmod3_1:4.5.3-2 libcolamd2_1:4.5.3-2 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 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libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnpth0_1.2-3 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-7 libpython2.7-dev_2.7.12-7 libpython2.7-minimal_2.7.12-7 libpython2.7-stdlib_2.7.12-7 libpython3-all-dev_3.5.1-4 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-8 libpython3.5-dev_3.5.2-8 libpython3.5-minimal_3.5.2-8 libpython3.5-stdlib_3.5.2-8 librbio2_1:4.5.3-2 libreadline7_7.0-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libsmartcols1_2.29-1 libspqr2_1:4.5.3-2 libsqlite3-0_3.15.1-1 libss2_1.43.3-1 libssl1.0.2_1.0.2j-4 libstdc++-6-dev_6.2.0-13+rpi1 libstdc++6_6.2.0-13+rpi1 libsuitesparse-dev_1:4.5.3-2 libsuitesparseconfig4_1:4.5.3-2 libsystemd0_232-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.0-13+rpi1 libudev1_232-6 libumfpack5_1:4.5.3-2 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20161101+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-2 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.29-1 multiarch-support_2.24-5+rpi1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 netbase_5.3 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 psmisc_22.21-2.1 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-decorator_4.0.6-1 python-dev_2.7.11-2 python-funcsigs_1.0.2-3 python-functools32_3.2.3.2-3 python-jsonschema_2.5.1-6 python-minimal_2.7.11-2 python-mock_2.0.0-3 python-numpy_1:1.11.2-1 python-pbr_1.10.0-1 python-pkg-resources_28.7.1-1 python-py_1.4.31-2 python-pytest_3.0.4-1 python-scipy_0.18.1-2 python-setuptools_28.7.1-1 python-six_1.10.0-3 python2.7_2.7.12-7 python2.7-dev_2.7.12-7 python2.7-minimal_2.7.12-7 python3_3.5.1-4 python3-all_3.5.1-4 python3-all-dev_3.5.1-4 python3-decorator_4.0.6-1 python3-dev_3.5.1-4 python3-jsonschema_2.5.1-6 python3-minimal_3.5.1-4 python3-numpy_1:1.11.2-1 python3-pkg-resources_28.7.1-1 python3-py_1.4.31-2 python3-pytest_3.0.4-1 python3-scipy_0.18.1-2 python3-setuptools_28.7.1-1 python3-six_1.10.0-3 python3.5_3.5.2-8 python3.5-dev_3.5.2-8 python3.5-minimal_3.5.2-8 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016i-1 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 29 11:46:59 2016 UTC
gpgv:                using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.5.6-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.5.6.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.5.6-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying exclude-pytest-benchmark.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-7795ce34-9143-4a73-85ed-d4e4b9c9c352
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.5.6-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build python-cobra-0.5.6
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-WTwoWK/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/cobra
creating build/temp.linux-armv7l-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build; python2.7 -m pytest 
============================= test session starts ==============================
platform linux2 -- Python 2.7.12+, pytest-3.0.4, py-1.4.31, pluggy-0.4.0
rootdir: /<<PKGBUILDDIR>>, inifile: 
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py:24: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py:12: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
collected 124 items

cobra/test/test_design.py ....
cobra/test/test_dictlist.py ...................
cobra/test/test_flux_analysis.py ..s........ss
cobra/test/test_io.py ......ssssxx.......sssss.ss...ss......
cobra/test/test_manipulation.py ...........
cobra/test/test_model.py ...........................
cobra/test/test_solvers.py ...........s

============== 105 passed, 17 skipped, 2 xfailed in 59.95 seconds ==============
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.5.2+, pytest-3.0.4, py-1.4.31, pluggy-0.4.0
rootdir: /<<PKGBUILDDIR>>, inifile: 
collected 124 items

cobra/test/test_design.py ....
cobra/test/test_dictlist.py ...................
cobra/test/test_flux_analysis.py ..s........ss
cobra/test/test_io.py ......ssssxx....ss.sssss.ss...ss...s..
cobra/test/test_manipulation.py ...........
cobra/test/test_model.py ...........................
cobra/test/test_solvers.py ...........s

============== 102 passed, 20 skipped, 2 xfailed in 64.38 seconds ==============
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py:24: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py:12: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
 fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-WTwoWK/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_design.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/conftest.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_design.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_dictlist.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_flux_analysis.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_io.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_manipulation.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_model.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__pycache__/test_solvers.cpython-27-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.pyc -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py to summary.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/conftest.py to conftest.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_design.py to test_design.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_dictlist.py to test_dictlist.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_manipulation.py to test_manipulation.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_solvers.py to test_solvers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_model.py to test_model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_flux_analysis.py to test_flux_analysis.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/test_io.py to test_io.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.5.6.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/DictList.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Object.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Gene.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Species.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Metabolite.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Reaction.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Solution.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Model.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/ArrayBasedModel.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__pycache__/Formula.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__pycache__/design_algorithms.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/essentiality.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/moma.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/variability.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/single_deletion.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/loopless.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/double_deletion.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/deletion_worker.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/sbml3.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/json.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__pycache__/mat.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/delete.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/modify.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/annotate.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__pycache__/validate.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/gurobi_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/parameters.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/coin.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/mosek.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/esolver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/wrappers.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/cplex_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/gurobi_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/glpk_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/cplex_solver_java.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__pycache__/glpk_solver.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/conftest.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_design.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_dictlist.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_flux_analysis.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_io.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_manipulation.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_model.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__pycache__/test_solvers.cpython-35-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__pycache__/__init__.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__pycache__/version.cpython-35.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/conftest.py to conftest.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_design.py to test_design.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_dictlist.py to test_dictlist.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_solvers.py to test_solvers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_model.py to test_model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_flux_analysis.py to test_flux_analysis.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/test_io.py to test_io.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.5.6.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:322: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.5.6-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.5.6-1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.5.6-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.5.6-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.5.6-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.5.6
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-12-05T14:55:27Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.5.6-1_armhf.changes:
-----------------------------------

Format: 1.8
Date: Tue, 29 Nov 2016 03:12:24 -0800
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.5.6-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@debian.org>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.5.6-1) unstable; urgency=medium
 .
   * Imported Upstream version 0.5.6
   * Update packaging to accommodate change in test suite framework
     - include a workaround for #846045 (in pytest-benchmark) to be able
       to run tests without pytest-benchmark available.
   * d/tests/Makefile: update test script to accommodate return code change
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python-cobra-dbgsym_0.5.6-1_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 153594 bytes: control archive=490 bytes.
     433 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-cobra-dbgsym
 Source: python-cobra
 Version: 0.5.6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 188
 Depends: python-cobra (= 0.5.6-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: bec5862999692bc87b31e57d6c130fce5468bdb4

drwxr-xr-x root/root         0 2016-11-29 11:12 ./
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/debug/.build-id/
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lrwxrwxrwx root/root         0 2016-11-29 11:12 ./usr/share/doc/python-cobra-dbgsym -> python-cobra


python-cobra_0.5.6-1_armhf.deb
------------------------------

 new debian package, version 2.0.
 size 155144 bytes: control archive=3196 bytes.
    1094 bytes,    21 lines      control              
    6540 bytes,    70 lines      md5sums              
     162 bytes,     9 lines   *  postinst             #!/bin/sh
     261 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Version: 0.5.6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 735
 Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python (<< 2.8), python (>= 2.7~), python-six, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-cobra-data (= 0.5.6-1)
 Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
 Suggests: python-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

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-rw-r--r-- root/root       927 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
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-rw-r--r-- root/root     12280 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
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-rw-r--r-- root/root      6926 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      8717 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     15378 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root       650 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     26634 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
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-rw-r--r-- root/root       442 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/design/
-rw-r--r-- root/root        33 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/design/__init__.py
-rw-r--r-- root/root     16525 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       673 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root      5996 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root     23281 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root      2967 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
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-rw-r--r-- root/root      2519 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root      4432 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root      3730 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
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-rw-r--r-- root/root      7065 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      9092 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root      4362 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/io/
-rw-r--r-- root/root       701 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root      9772 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/io/json.py
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-rw-r--r-- root/root     29063 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/manipulation/
-rw-r--r-- root/root       414 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root       834 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root      8601 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root     14568 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root      2111 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/solvers/
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-rw-r--r-- root/root     13257 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
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-rw-r--r-- root/root      6286 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
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-rw-r--r-- root/root     10671 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
-rw-r--r-- root/root      8626 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root      7741 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root      1114 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/test/
-rw-r--r-- root/root      1346 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/test/__init__.py
-rw-r--r-- root/root      1107 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/test/conftest.py
lrwxrwxrwx root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root      2562 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/test/test_design.py
-rw-r--r-- root/root      9741 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/test/test_dictlist.py
-rw-r--r-- root/root     16470 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/test/test_flux_analysis.py
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-rw-r--r-- root/root     11396 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/test/test_solvers.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/lib/python2.7/dist-packages/cobra/topology/
-rw-r--r-- root/root       251 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6564 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2016-11-27 12:04 ./usr/lib/python2.7/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/share/
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/share/doc/python-cobra/
-rw-r--r-- root/root      1922 2016-11-27 12:04 ./usr/share/doc/python-cobra/README.rst.gz
-rw-r--r-- root/root      1556 2016-11-29 11:12 ./usr/share/doc/python-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2062 2016-11-19 05:54 ./usr/share/doc/python-cobra/copyright


python3-cobra-dbgsym_0.5.6-1_armhf.deb
--------------------------------------

 new debian package, version 2.0.
 size 182062 bytes: control archive=494 bytes.
     436 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-cobra-dbgsym
 Source: python-cobra
 Version: 0.5.6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 216
 Depends: python3-cobra (= 0.5.6-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python3-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 45dae8919efb69e186ed59e9850f7a87dbd14477

drwxr-xr-x root/root         0 2016-11-29 11:12 ./
drwxr-xr-x root/root         0 2016-11-29 11:12 ./usr/
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lrwxrwxrwx root/root         0 2016-11-29 11:12 ./usr/share/doc/python3-cobra-dbgsym -> python3-cobra


python3-cobra_0.5.6-1_armhf.deb
-------------------------------

 new debian package, version 2.0.
 size 148258 bytes: control archive=3165 bytes.
    1086 bytes,    22 lines      control              
    6048 bytes,    66 lines      md5sums              
     165 bytes,     9 lines   *  postinst             #!/bin/sh
     401 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.5.6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 692
 Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python3 (<< 3.6), python3 (>= 3.5~), python3-six, python3:any (>= 3.3.2-2~), python-cobra-data (= 0.5.6-1)
 Recommends: python3-numpy, python3-scipy, python3-pandas
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

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-rw-r--r-- root/root      2062 2016-11-19 05:54 ./usr/share/doc/python3-cobra/copyright


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| Post Build                                                                   |
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+------------------------------------------------------------------------------+
| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 41292
Build-Time: 481
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 697
Job: python-cobra_0.5.6-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1228
Source-Version: 0.5.6-1
Space: 41292
Status: successful
Version: 0.5.6-1
--------------------------------------------------------------------------------
Finished at 2016-12-05T14:55:27Z
Build needed 00:20:28, 41292k disc space

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