python-cobra →
0.4.2~b1-1 →
armhf → 2016-07-23 12:22:04
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testbuildd.raspbian.org
+==============================================================================+
| python-cobra 0.4.2~b1-1 (armhf) 23 Jul 2016 11:55 |
+==============================================================================+
Package: python-cobra
Version: 0.4.2~b1-1
Source Version: 0.4.2~b1-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/python-cobra-WK6qvo/python-cobra-0.4.2~b1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-WK6qvo' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-f63b3628-e838-4397-be71-e3e70aa17cc1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9183 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.3 MB in 24s (817 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-cobra.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2693 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.2~b1-1 (dsc) [2414 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.2~b1-1 (tar) [2685 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.2~b1-1 (diff) [5720 B]
Fetched 2693 kB in 1s (2369 kB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-LBFkWY/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ Packages [526 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-LBFkWY/apt_archive/./Release.gpg: Signature by key 085A60275B95EE7E758335885FBC947B34E39F26 uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 31 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-LBFkWY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
Filtered Build-Depends: debhelper (>= 9), dh-python, libglpk-dev, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-ygX9JB/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Sources [302 B]
Get:5 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ Packages [620 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-ygX9JB/apt_archive/./Release.gpg: Signature by key 085A60275B95EE7E758335885FBC947B34E39F26 uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install python-cobra build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-5 groff-base intltool-debian libamd2
libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbtf1
libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran-5-dev
libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libicu55 libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic1
libmetis5 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
librbio2 libsigsegv2 libspqr2 libsqlite3-0 libssl1.0.2 libsuitesparse-dev
libsuitesparseconfig4 libtimedate-perl libtool libumfpack5 libunistring0
libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev
python-decorator python-dev python-funcsigs python-functools32
python-jsonschema python-minimal python-mock python-numpy python-pbr
python-pkg-resources python-scipy python-setuptools python-six python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-decorator python3-dev python3-jsonschema python3-minimal
python3-numpy python3-pkg-resources python3-scipy python3-setuptools
python3-six python3.5 python3.5-dev python3.5-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man
liblapack-doc libiodbc2-dev libmysqlclient-dev gmp-doc libgmp10-doc
libmpfr-dev libtool-doc gcj-jdk less www-browser libmail-box-perl python-doc
python-tk python-funcsigs-doc python-mock-doc python-nose python-numpy-dbg
python-numpy-doc python-scipy-doc python-setuptools-doc python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3-nose
python3-numpy-dbg python3.5-venv python3.5-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl python-imaging
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-5 groff-base intltool-debian libamd2
libarchive-zip-perl libblas-common libblas-dev libblas3 libbsd0 libbtf1
libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libexpat1
libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran-5-dev
libgfortran3 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libicu55 libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic1
libmetis5 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
librbio2 libsigsegv2 libspqr2 libsqlite3-0 libssl1.0.2 libsuitesparse-dev
libsuitesparseconfig4 libtimedate-perl libtool libumfpack5 libunistring0
libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev
python-decorator python-dev python-funcsigs python-functools32
python-jsonschema python-minimal python-mock python-numpy python-pbr
python-pkg-resources python-scipy python-setuptools python-six python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-decorator python3-dev python3-jsonschema python3-minimal
python3-numpy python3-pkg-resources python3-scipy python3-setuptools
python3-six python3.5 python3.5-dev python3.5-minimal
sbuild-build-depends-python-cobra-dummy zlib1g-dev
0 upgraded, 118 newly installed, 0 to remove and 31 not upgraded.
Need to get 139 MB/147 MB of archives.
After this operation, 422 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-ygX9JB/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [860 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-1 [387 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-1 [1167 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.13.0-1 [479 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-1 [1844 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-1 [276 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libmetis5 armhf 5.1.0.dfsg-4 [129 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.2-2 [562 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.2-2 [1424 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-4 [35.3 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.2-2 [2082 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.2-2 [210 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-4 [18.6 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20160609 [78.4 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-4 [21.7 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.12-1 [907 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-2 [1452 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.23.4+git4-g7eed8d8-2 [1461 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-2 [2546 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160709 [799 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.4.0-4 [182 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.4.0-4 [23.7 MB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-3 [1370 B]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4 armhf 1:4.5.3-1 [18.4 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libamd2 armhf 1:4.5.3-1 [30.0 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libbtf1 armhf 1:4.5.3-1 [18.8 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libcamd2 armhf 1:4.5.3-1 [25.3 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libccolamd2 armhf 1:4.5.3-1 [26.2 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libcolamd2 armhf 1:4.5.3-1 [23.2 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libcholmod3 armhf 1:4.5.3-1 [201 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3 armhf 1:4.5.3-1 [46.6 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.2.0-1 [117 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libglpk40 armhf 4.60-2+b1 [329 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.1+dfsg-1 [21.5 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.1+dfsg-1 [561 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libklu1 armhf 1:4.5.3-1 [47.7 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libldl2 armhf 1:4.5.3-1 [18.6 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libumfpack5 armhf 1:4.5.3-1 [125 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf librbio2 armhf 1:4.5.3-1 [27.2 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libspqr2 armhf 1:4.5.3-1 [62.3 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.5.3-1 [550 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.60-2+b1 [363 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.12-1 [27.1 MB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-2 [19.8 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-2 [958 B]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.2-2 [1161 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.2-2 [36.5 MB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.5.1-4 [18.7 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.5.1-4 [960 B]
Get:90 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-2 [940 B]
Get:91 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.12-1 [278 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-2 [1132 B]
Get:93 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-2 [964 B]
Get:94 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 0.4-2 [12.8 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-2 [10.8 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 20.10.1-1.1 [141 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-3 [14.4 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.8.0-4.1 [47.2 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf python-mock all 1.3.0-2.1 [58.2 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-5 [32.6 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.11.1~rc1-1 [1599 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 20.10.1-1.1 [203 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.5.1-4 [932 B]
Get:105 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.2-2 [413 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.5.1-4 [1164 B]
Get:107 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.5.1-4 [958 B]
Get:108 http://172.17.0.1/private stretch-staging/main armhf python3-decorator all 4.0.6-1 [12.8 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf python3-jsonschema all 2.5.1-5 [32.3 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf python3-numpy armhf 1:1.11.1~rc1-1 [1598 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 20.10.1-1.1 [112 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 20.10.1-1.1 [122 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-3 [14.4 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.17.1-1 [7842 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf python3-scipy armhf 0.17.1-1 [7457 kB]
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Processing triggers for libc-bin (2.23-1+rpi1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up mime-support (3.60) ...
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Setting up m4 (1.4.17-5) ...
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Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
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Setting up libsqlite3-0:armhf (3.13.0-1) ...
Setting up libcolamd2:armhf (1:4.5.3-1) ...
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Setting up libffi6:armhf (3.2.1-4) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.1.1+dfsg-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.12-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up libbtf1:armhf (1:4.5.3-1) ...
Setting up libldl2:armhf (1:4.5.3-1) ...
Setting up libgmp-dev:armhf (2:6.1.1+dfsg-1) ...
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update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.48.1-2) ...
No schema files found: doing nothing.
Setting up libpython3.5-stdlib:armhf (3.5.2-2) ...
Setting up librbio2:armhf (1:4.5.3-1) ...
Setting up libcamd2:armhf (1:4.5.3-1) ...
Setting up libklu1:armhf (1:4.5.3-1) ...
Setting up python2.7 (2.7.12-1) ...
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Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
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Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.12-1) ...
Setting up python2.7-dev (2.7.12-1) ...
Setting up python (2.7.11-2) ...
Setting up libspqr2:armhf (1:4.5.3-1) ...
Setting up libtool (2.4.6-0.1) ...
Setting up python3.5 (3.5.2-2) ...
Setting up gfortran (4:5.3.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpython3-stdlib:armhf (3.5.1-4) ...
Setting up libpython-dev:armhf (2.7.11-2) ...
Setting up python-functools32 (3.2.3.2-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libpython3.5:armhf (3.5.2-2) ...
Setting up python-dev (2.7.11-2) ...
Setting up libpython-all-dev:armhf (2.7.11-2) ...
Setting up libumfpack5:armhf (1:4.5.3-1) ...
Setting up python-pkg-resources (20.10.1-1.1) ...
Setting up libpython3.5-dev:armhf (3.5.2-2) ...
Setting up python-numpy (1:1.11.1~rc1-1) ...
Setting up cython (0.23.4+git4-g7eed8d8-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up python-six (1.10.0-3) ...
Setting up python-pbr (1.8.0-4.1) ...
update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode
Setting up python-funcsigs (0.4-2) ...
Setting up python-decorator (4.0.6-1) ...
Setting up python3.5-dev (3.5.2-2) ...
Setting up python-all (2.7.11-2) ...
Setting up libpython3-dev:armhf (3.5.1-4) ...
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up python-setuptools (20.10.1-1.1) ...
Setting up python-scipy (0.17.1-1) ...
Setting up po-debconf (1.0.19) ...
Setting up python-mock (1.3.0-2.1) ...
Setting up python-all-dev (2.7.11-2) ...
Setting up libpython3-all-dev:armhf (3.5.1-4) ...
Setting up libsuitesparse-dev:armhf (1:4.5.3-1) ...
Setting up libglpk-dev (4.60-2+b1) ...
Setting up python-jsonschema (2.5.1-5) ...
update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up python3 (3.5.1-4) ...
Setting up python3-numpy (1:1.11.1~rc1-1) ...
Setting up python3-six (1.10.0-3) ...
Setting up python3-dev (3.5.1-4) ...
Setting up python3-pkg-resources (20.10.1-1.1) ...
Setting up python3-jsonschema (2.5.1-5) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Setting up python3-all (3.5.1-4) ...
Setting up cython3 (0.23.4+git4-g7eed8d8-2) ...
Setting up python3-setuptools (20.10.1-1.1) ...
Setting up dh-python (2.20160609) ...
Setting up python3-decorator (4.0.6-1) ...
Setting up python3-scipy (0.17.1-1) ...
Setting up dh-autoreconf (12) ...
Setting up python3-all-dev (3.5.1-4) ...
Setting up debhelper (9.20160709) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.23-1+rpi1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 cython_0.23.4+git4-g7eed8d8-2 cython3_0.23.4+git4-g7eed8d8-2 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160709 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160609 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:5.3.1-3 gfortran-5_5.4.0-4 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libamd2_1:4.5.3-1 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre2 libarchive-zip-perl_1.57-1 libasan2_5.4.0-4 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28-5 libbsd0_0.8.3-1 libbtf1_1:4.5.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-1+rpi1 libc-dev-bin_2.23-1+rpi1 libc6_2.23-1+rpi1 libc6-dev_2.23-1+rpi1 libcamd2_1:4.5.3-1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libccolamd2_1:4.5.3-1 libcholmod3_1:4.5.3-1 libcolamd2_1:4.5.3-1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcxsparse3_1:4.5.3-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libgfortran-5-dev_5.4.0-4 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-2 libglpk-dev_4.60-2+b1 libglpk40_4.60-2+b1 libgmp-dev_2:6.1.1+dfsg-1 libgmp10_2:6.1.1+dfsg-1 libgmpxx4ldbl_2:6.1.1+dfsg-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libklu1_1:4.5.3-1 libkmod2_22-1.1 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libldl2_1:4.5.3-1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmetis5_5.1.0.dfsg-4 libmount1_2.28-5 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-2 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-1 libpython2.7-dev_2.7.12-1 libpython2.7-minimal_2.7.12-1 libpython2.7-stdlib_2.7.12-1 libpython3-all-dev_3.5.1-4 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-2 libpython3.5-dev_3.5.2-2 libpython3.5-minimal_3.5.2-2 libpython3.5-stdlib_3.5.2-2 librbio2_1:4.5.3-1 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libspqr2_1:4.5.3-1 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsuitesparse-dev_1:4.5.3-1 libsuitesparseconfig4_1:4.5.3-1 libsystemd0_230-5 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libumfpack5_1:4.5.3-1 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28-5 multiarch-support_2.23-1+rpi1 nano_2.6.1-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-decorator_4.0.6-1 python-dev_2.7.11-2 python-funcsigs_0.4-2 python-functools32_3.2.3.2-2 python-jsonschema_2.5.1-5 python-minimal_2.7.11-2 python-mock_1.3.0-2.1 python-numpy_1:1.11.1~rc1-1 python-pbr_1.8.0-4.1 python-pkg-resources_20.10.1-1.1 python-scipy_0.17.1-1 python-setuptools_20.10.1-1.1 python-six_1.10.0-3 python2.7_2.7.12-1 python2.7-dev_2.7.12-1 python2.7-minimal_2.7.12-1 python3_3.5.1-4 python3-all_3.5.1-4 python3-all-dev_3.5.1-4 python3-decorator_4.0.6-1 python3-dev_3.5.1-4 python3-jsonschema_2.5.1-5 python3-minimal_3.5.1-4 python3-numpy_1:1.11.1~rc1-1 python3-pkg-resources_20.10.1-1.1 python3-scipy_0.17.1-1 python3-setuptools_20.10.1-1.1 python3-six_1.10.0-3 python3.5_3.5.2-2 python3.5-dev_3.5.2-2 python3.5-minimal_3.5.2-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016f-1 udev_230-5 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Jul 17 23:51:43 2016 UTC using RSA key ID 3AF9DDC1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.2~b1-1.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.2~b1
dpkg-source: info: unpacking python-cobra_0.4.2~b1.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.2~b1-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying reproducible.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-f63b3628-e838-4397-be71-e3e70aa17cc1
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.4.2~b1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build python-cobra-0.4.2~b1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3 setup.py build
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/cobra
creating build/temp.linux-armv7l-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py test
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.so
/<<PKGBUILDDIR>>/cobra/io/sbml3.py:23: UserWarning: Install lxml for faster SBML I/O
warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/cobra/io/__init__.py:10: UserWarning: cobra.io.sbml requires libsbml
warn("cobra.io.sbml requires libsbml")
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_foruma_element_setting (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_copy (cobra.test.unit_tests.TestReactions) ... ok
test_iadd (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_mul (cobra.test.unit_tests.TestReactions) ... ok
test_sub (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion_fba (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion_moma (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'no qp support'
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_summary_methods (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'summary methods require pandas'
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_rename_gene (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok
----------------------------------------------------------------------
Ran 131 tests in 76.090s
OK (skipped=12)
I: pybuild base:184: python3.5 setup.py test
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
/<<PKGBUILDDIR>>/cobra/io/sbml3.py:23: UserWarning: Install lxml for faster SBML I/O
warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/cobra/io/__init__.py:10: UserWarning: cobra.io.sbml requires libsbml
warn("cobra.io.sbml requires libsbml")
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_foruma_element_setting (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_copy (cobra.test.unit_tests.TestReactions) ... ok
test_iadd (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_mul (cobra.test.unit_tests.TestReactions) ... ok
test_sub (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion_fba (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion_moma (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'no qp support'
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_summary_methods (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'summary methods require pandas'
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_rename_gene (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok
----------------------------------------------------------------------
Ran 131 tests in 80.338s
OK (skipped=16)
fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root '/<<PKGBUILDDIR>>/debian/python-cobra'
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py to summary.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/design.py to design.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/manipulation.py to manipulation.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root '/<<PKGBUILDDIR>>/debian/python3-cobra'
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/design.py to design.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/io_tests.py to io_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/manipulation.py to manipulation.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/solvers.py to solvers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing cobra.egg-info/PKG-INFO
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.4.2b1.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs -Xexample
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:322: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
dh_python3 -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.4.2~b1-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.4.2~b1-1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.4.2~b1-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.4.2~b1-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../python-cobra_0.4.2~b1-1_armhf.changes
dpkg-genchanges: warning: package python3-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package python-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build python-cobra-0.4.2~b1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160723-1219
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.4.2~b1-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Sun, 17 Jul 2016 16:43:42 -0700
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.4.2~b1-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@debian.org>
Description:
python-cobra - constraint-based modeling of biological networks (Python 2)
python-cobra-data - constraint-based modeling of biological networks (data)
python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
python-cobra (0.4.2~b1-1) unstable; urgency=medium
.
* Imported Upstream version 0.4.2~b1
* Refresh patches
* Use Make to drive autopkgtests and document some rationale
* Clean up d/control and d/rules
* Include jsonschema and pandas to run additional CI tests
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Files:
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c24d3ea32d39dbe3a8d80b92a728378c 149506 python optional python-cobra_0.4.2~b1-1_armhf.deb
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python-cobra-dbgsym_0.4.2~b1-1_armhf.deb
----------------------------------------
new debian package, version 2.0.
size 155940 bytes: control archive=499 bytes.
439 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: python-cobra-dbgsym
Source: python-cobra
Version: 0.4.2~b1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 190
Depends: python-cobra (= 0.4.2~b1-1)
Section: debug
Priority: extra
Homepage: http://opencobra.github.io/cobrapy/
Description: Debug symbols for python-cobra
Auto-Built-Package: debug-symbols
Build-Ids: 9a0374b10ff9d16c659e6e71f3279ee8661b994e
drwxr-xr-x root/root 0 2016-07-23 12:19 ./
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root 183636 2016-07-23 12:19 ./usr/lib/debug/.build-id/9a/0374b10ff9d16c659e6e71f3279ee8661b994e.debug
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/share/
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-23 12:19 ./usr/share/doc/python-cobra-dbgsym -> python-cobra
python-cobra_0.4.2~b1-1_armhf.deb
---------------------------------
new debian package, version 2.0.
size 149506 bytes: control archive=3154 bytes.
1079 bytes, 21 lines control
6342 bytes, 68 lines md5sums
160 bytes, 9 lines * postinst #!/bin/sh
259 bytes, 14 lines * prerm #!/bin/sh
Package: python-cobra
Version: 0.4.2~b1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 724
Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~), python-cobra-data (= 0.4.2~b1-1)
Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
Suggests: python-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks (Python 2)
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
.
This package provides the Python 2 module.
drwxr-xr-x root/root 0 2016-07-23 12:19 ./
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/
drwxr-xr-x root/root 0 2016-07-23 12:18 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-23 12:18 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2016-07-23 12:18 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2016-07-23 12:18 ./usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info/
-rw-r--r-- root/root 4058 2016-07-23 12:18 ./usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2016-07-23 12:18 ./usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info/dependency_links.txt
-rw-r--r-- root/root 246 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info/requires.txt
-rw-r--r-- root/root 6 2016-07-23 12:18 ./usr/lib/python2.7/dist-packages/cobra-0.4.2b1.egg-info/top_level.txt
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/
-rw-r--r-- root/root 8 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/VERSION
-rw-r--r-- root/root 927 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/core/
-rw-r--r-- root/root 16558 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root 12271 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root 5237 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root 6926 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root 8692 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root 15140 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root 650 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root 26108 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root 1232 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root 1241 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root 442 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/design/
-rw-r--r-- root/root 33 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/design/__init__.py
-rw-r--r-- root/root 16187 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 673 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 5996 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root 23281 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root 2967 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root 7069 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 2519 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 4432 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 3720 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 12258 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 7333 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 7065 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root 7002 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root 4380 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/io/
-rw-r--r-- root/root 598 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 9831 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 8746 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 31835 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 27753 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 414 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 834 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root 8601 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 14568 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root 2111 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/solvers/
-rw-r--r-- root/root 4098 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root 159552 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so
-rw-r--r-- root/root 4233 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root 13257 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root 11786 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
-rw-r--r-- root/root 6286 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root 9664 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root 14272 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
-rw-r--r-- root/root 10511 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root 10671 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
-rw-r--r-- root/root 8626 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root 7741 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root 1114 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/test/
-rw-r--r-- root/root 1977 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/__init__.py
lrwxrwxrwx root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root 3421 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/design.py
-rw-r--r-- root/root 17688 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py
-rw-r--r-- root/root 9535 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/io_tests.py
-rw-r--r-- root/root 12825 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/manipulation.py
-rw-r--r-- root/root 12331 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/solvers.py
-rw-r--r-- root/root 35598 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py
drwxr-xr-x root/root 0 2016-07-23 12:19 ./usr/lib/python2.7/dist-packages/cobra/topology/
-rw-r--r-- root/root 251 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root 6564 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root 4585 2016-07-15 09:30 ./usr/lib/python2.7/dist-packages/cobra/version.py
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python3-cobra-dbgsym_0.4.2~b1-1_armhf.deb
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new debian package, version 2.0.
size 181760 bytes: control archive=500 bytes.
442 bytes, 13 lines control
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Package: python3-cobra-dbgsym
Source: python-cobra
Version: 0.4.2~b1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 215
Depends: python3-cobra (= 0.4.2~b1-1)
Section: debug
Priority: extra
Homepage: http://opencobra.github.io/cobrapy/
Description: Debug symbols for python3-cobra
Auto-Built-Package: debug-symbols
Build-Ids: f1f836cbc918b8beb8ae6bb41d26b2ac0f00fac5
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python3-cobra_0.4.2~b1-1_armhf.deb
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new debian package, version 2.0.
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163 bytes, 9 lines * postinst #!/bin/sh
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Package: python3-cobra
Source: python-cobra
Version: 0.4.2~b1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 680
Depends: libc6 (>= 2.4), libglpk40 (>= 4.59), python3 (<< 3.6), python3 (>= 3.5~), python3-six, python-cobra-data (= 0.4.2~b1-1)
Recommends: python3-numpy, python3-scipy, python3-pandas
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks (Python 3)
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
.
This package provides the Python 3 module.
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Build Architecture: armhf
Build-Space: 41928
Build-Time: 599
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 831
Job: python-cobra_0.4.2~b1-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1483
Source-Version: 0.4.2~b1-1
Space: 41928
Status: successful
Version: 0.4.2~b1-1
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Finished at 20160723-1219
Build needed 00:24:43, 41928k disc space