Raspbian Package Auto-Building

python-cobra → 0.4.1-1 → armhf → 2016-03-30 11:41:41

sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01

+==============================================================================+
| python-cobra 0.4.1-1 (armhf)                               30 Mar 2016 11:16 |
+==============================================================================+

Package: python-cobra
Version: 0.4.1-1
Source Version: 0.4.1-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-cobra-lrzHiq/python-cobra-0.4.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-lrzHiq' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-1dfec485-3148-451a-9620-9d8840538b9e' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8851 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.8 MB in 22s (888 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-cobra.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2691 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.1-1 (dsc) [2393 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.1-1 (tar) [2683 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.1-1 (diff) [5100 B]
Fetched 2691 kB in 0s (7014 kB/s)
Download complete and in download only mode

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-z0g_yb/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Packages [528 B]
Ign:4 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ Packages [528 B]
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  manpages
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-z0g_yb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12614 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-nhrX0K/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Sources [299 B]
Get:5 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Packages [622 B]
Ign:4 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Sources
Get:4 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Sources [299 B]
Ign:5 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Packages
Get:5 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ Packages [622 B]
Reading package lists...
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  manpages
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autotools-dev bsdmainutils cpp-5 cython cython3 debhelper dh-python
  dh-strip-nondeterminism file g++-5 gcc-5 gcc-5-base gettext gettext-base
  gfortran gfortran-5 groff-base intltool-debian libamd2.4.1
  libarchive-zip-perl libasan2 libatomic1 libblas-common libblas-dev libblas3
  libbsd0 libbtf1.2.1 libcamd2.4.1 libcc1-0 libccolamd2.9.1 libcholmod3.0.6
  libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcxsparse3.1.4 libexpat1
  libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgcc-5-dev libgcc1
  libgfortran-5-dev libgfortran3 libglib2.0-0 libglpk-dev libglpk39 libgmp-dev
  libgmpxx4ldbl libgomp1 libicu55 libklu1.3.3 liblapack-dev liblapack3
  libldl2.2.1 libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libpython3.5
  libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libspqr2.0.2
  libsqlite3-0 libssl1.0.2 libstdc++-5-dev libstdc++6 libsuitesparse-dev
  libsuitesparseconfig4.4.6 libtimedate-perl libubsan0 libumfpack5.7.1
  libunistring0 libxml2 man-db mime-support po-debconf python python-all
  python-all-dev python-decorator python-dev python-funcsigs
  python-functools32 python-jsonschema python-minimal python-mock python-numpy
  python-pbr python-pkg-resources python-scipy python-setuptools python-six
  python2.7 python2.7-dev python2.7-minimal python3 python3-all
  python3-all-dev python3-decorator python3-dev python3-jsonschema
  python3-minimal python3-numpy python3-pkg-resources python3-scipy
  python3-setuptools python3-six python3.4 python3.4-minimal python3.5
  python3.5-dev python3.5-minimal zlib1g-dev
Suggested packages:
  wamerican | wordlist whois vacation gcc-5-locales cython-doc dh-make
  gcc-5-doc libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
  libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
  libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg gettext-doc autopoint
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
  libgfortran3-dbg groff liblapack-doc-man liblapack-doc libiodbc2-dev
  libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev libstdc++-5-doc less
  www-browser libmail-box-perl python-doc python-tk python-funcsigs-doc
  python-mock-doc python-nose python-numpy-dbg python-numpy-doc
  python-scipy-doc python-setuptools-doc python2.7-doc binfmt-support
  python3-doc python3-tk python3-venv python3-nose python3-numpy-dbg
  python3.4-venv python3.4-doc python3.5-venv python3.5-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  xml-core libmail-sendmail-perl python-imaging
The following NEW packages will be installed:
  autotools-dev bsdmainutils cython cython3 debhelper dh-python
  dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-5
  groff-base intltool-debian libamd2.4.1 libarchive-zip-perl libblas-common
  libblas-dev libblas3 libbsd0 libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1
  libcholmod3.0.6 libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcxsparse3.1.4
  libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
  libgfortran-5-dev libgfortran3 libglib2.0-0 libglpk-dev libglpk39 libgmp-dev
  libgmpxx4ldbl libicu55 libklu1.3.3 liblapack-dev liblapack3 libldl2.2.1
  libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev
  libpython3.5-minimal libpython3.5-stdlib libspqr2.0.2 libsqlite3-0
  libssl1.0.2 libsuitesparse-dev libsuitesparseconfig4.4.6 libtimedate-perl
  libumfpack5.7.1 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-decorator python-dev python-funcsigs
  python-functools32 python-jsonschema python-minimal python-mock python-numpy
  python-pbr python-pkg-resources python-scipy python-setuptools python-six
  python2.7 python2.7-dev python2.7-minimal python3 python3-all
  python3-all-dev python3-decorator python3-dev python3-jsonschema
  python3-minimal python3-numpy python3-pkg-resources python3-scipy
  python3-setuptools python3-six python3.4 python3.4-minimal python3.5
  python3.5-dev python3.5-minimal sbuild-build-depends-python-cobra-dummy
  zlib1g-dev
The following packages will be upgraded:
  cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
  libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 114 newly installed, 0 to remove and 24 not upgraded.
Need to get 222 MB/222 MB of archives.
After this operation, 452 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-nhrX0K/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [858 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-12 [47.3 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-12 [6556 B]
Get:4 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-12 [170 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:5.3.1-12 [38.5 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-12 [226 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-12 [84.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-12 [22.9 MB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 5.3.1-12 [24.8 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-12 [24.5 MB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-12 [22.9 MB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-12 [451 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-12 [1430 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 5.3.1-12 [328 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.2-1 [88.0 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.9 [177 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-6 [381 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-6 [1160 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.1-1 [60.4 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.11.1-1 [457 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2g-1 [886 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-6 [1818 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-6 [268 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-5 [553 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-5 [1333 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-3 [35.2 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-5 [2063 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-5 [194 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-3 [18.6 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-3 [21.6 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-minimal armhf 3.4.4-2 [494 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf python3.4-minimal armhf 3.4.4-2 [1268 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-6 [909 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-1 [1446 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.23.4+git4-g7eed8d8-1 [1453 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:62 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160313 [808 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-12 [153 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-12 [182 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-12 [23.7 MB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4.4.6 armhf 1:4.4.6-1 [16.6 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libamd2.4.1 armhf 1:4.4.6-1 [25.8 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libbtf1.2.1 armhf 1:4.4.6-1 [17.1 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libcamd2.4.1 armhf 1:4.4.6-1 [23.5 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libccolamd2.9.1 armhf 1:4.4.6-1 [24.4 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libcolamd2.9.1 armhf 1:4.4.6-1 [21.5 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libcholmod3.0.6 armhf 1:4.4.6-1 [192 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libcsparse3.1.4 armhf 1:4.4.6-1 [31.2 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3.1.4 armhf 1:4.4.6-1 [43.7 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.1-1 [117 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libglpk39 armhf 4.58-2 [322 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.0+dfsg-2 [21.4 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.0+dfsg-2 [560 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libklu1.3.3 armhf 1:4.4.6-1 [45.6 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libldl2.2.1 armhf 1:4.4.6-1 [16.9 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libumfpack5.7.1 armhf 1:4.4.6-1 [123 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libspqr2.0.2 armhf 1:4.4.6-1 [61.0 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.0-2 [1355 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.4.6-1 [574 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.58-2 [358 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-6 [27.1 MB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.1-5 [1160 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.1-5 [36.4 MB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.5.1-3 [18.7 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.5.1-3 [964 B]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-stdlib armhf 3.4.4-2 [2061 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:102 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-6 [279 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:104 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:105 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 0.4-2 [12.8 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-2 [10.8 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-2 [14.2 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.8.0-4 [47.1 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf python-mock all 1.3.0-2.1 [58.2 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-4 [49.2 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.10.4-2 [1551 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.5.1-3 [940 B]
Get:116 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.1-5 [418 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.5.1-3 [1154 B]
Get:118 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.5.1-3 [962 B]
Get:119 http://172.17.0.1/private stretch-staging/main armhf python3-decorator all 4.0.6-1 [12.8 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf python3-jsonschema all 2.5.1-4 [48.9 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf python3.4 armhf 3.4.4-2 [229 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf python3-numpy armhf 1:1.10.4-2 [1644 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 18.8-1 [71.1 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 18.8-1 [120 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-2 [14.2 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.17.0-1 [7841 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf python3-scipy armhf 0.17.0-1 [8101 kB]
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Processing triggers for libc-bin (2.22-3) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-5 dpkg-dev_1.18.4 g++-5_5.3.1-12 gcc-5_5.3.1-12 libc6-dev_2.22-3 libstdc++-5-dev_5.3.1-12 libstdc++6_5.3.1-12 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.6 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-5 bsdmainutils_9.0.9 bsdutils_1:2.27.1-6 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-12 cython_0.23.4+git4-g7eed8d8-1 cython3_0.23.4+git4-g7eed8d8-1 dash_0.5.8-2.1 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160313 debianutils_4.7 dh-python_2.20151103 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.116-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-12 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-12 gcc-5_5.3.1-12 gcc-5-base_5.3.1-12 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-12 gnupg_1.4.20-4 gpgv_1.4.20-4 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.17 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python3-minimal_3.5.1-3 python3-numpy_1:1.10.4-2 python3-pkg-resources_18.8-1 python3-scipy_0.17.0-1 python3-setuptools_18.8-1 python3-six_1.10.0-2 python3.4_3.4.4-2 python3.4-minimal_3.4.4-2 python3.5_3.5.1-5 python3.5-dev_3.5.1-5 python3.5-minimal_3.5.1-5 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-2 systemd-sysv_229-2 sysv-rc_2.88dsf-59.3 sysvinit-utils_2.88dsf-59.3 tar_1.28-2.1 tzdata_2016a-1 udev_229-2 util-linux_2.27.1-6 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Mar 25 03:43:13 2016 UTC using RSA key ID AFE826FB
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.1-1.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.1
dpkg-source: info: unpacking python-cobra_0.4.1.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.1-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-1dfec485-3148-451a-9620-9d8840538b9e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package python-cobra
dpkg-buildpackage: source version 0.4.1-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build python-cobra-0.4.1
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/cobra
creating build/temp.linux-armv7l-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.so
/<<PKGBUILDDIR>>/cobra/io/sbml3.py:23: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/cobra/io/__init__.py:10: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_foruma_element_setting (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_copy (cobra.test.unit_tests.TestReactions) ... ok
test_iadd (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_mul (cobra.test.unit_tests.TestReactions) ... ok
test_sub (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_summary_methods (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'summary methods require pandas'
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 129 tests in 77.048s

OK (skipped=11)
I: pybuild base:184: python3.5 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing cobra.egg-info/PKG-INFO
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
/<<PKGBUILDDIR>>/cobra/io/sbml3.py:23: UserWarning: Install lxml for faster SBML I/O
  warn("Install lxml for faster SBML I/O")
/<<PKGBUILDDIR>>/cobra/io/__init__.py:10: UserWarning: cobra.io.sbml requires libsbml
  warn("cobra.io.sbml requires libsbml")
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_foruma_element_setting (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_copy (cobra.test.unit_tests.TestReactions) ... ok
test_iadd (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_mul (cobra.test.unit_tests.TestReactions) ... ok
test_sub (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_summary_methods (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'summary methods require pandas'
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 129 tests in 75.397s

OK (skipped=15)
 fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2,python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py to summary.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/design.py to design.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/manipulation.py to manipulation.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.1.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/design.py to design.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/io_tests.py to io_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/manipulation.py to manipulation.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/solvers.py to solvers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing top-level names to cobra.egg-info/top_level.txt
writing requirements to cobra.egg-info/requires.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.4.1.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs -Xexample
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.4.1-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.4.1-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.4.1-1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.4.1-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.4.1-1_armhf.changes
dpkg-genchanges: warning: package python-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package python3-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.4.1
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160330-1140

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.4.1-1_armhf.changes:
-----------------------------------

Format: 1.8
Date: Thu, 24 Mar 2016 20:31:39 -0700
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.4.1-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@debian.org>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.4.1-1) unstable; urgency=medium
 .
   * Imported Upstream version 0.4.1
   * Refreshed patch
Checksums-Sha1:
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 44cef09a6cc17890b30456b3bb0528f76dc31473 148114 python-cobra_0.4.1-1_armhf.deb
 6a94026310f247d554e49bb8a033fa7247a0f267 181694 python3-cobra-dbgsym_0.4.1-1_armhf.deb
 73d19f394e5daa0ee396ab77ecefd3b7653fe400 143446 python3-cobra_0.4.1-1_armhf.deb
Checksums-Sha256:
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 72bce78f1522ecf90b7189a63eeded5636c5206477e7b5bcbfd069a8a952d7a0 148114 python-cobra_0.4.1-1_armhf.deb
 4fece505b5daf4bce76aea5e275219aa7178486edf7d13d4d79a3d3f4dcb0142 181694 python3-cobra-dbgsym_0.4.1-1_armhf.deb
 517e7457fd44e9eed4e359190d0eb9d0ebaac01d2cc7a82899b0e5dd9603b2cc 143446 python3-cobra_0.4.1-1_armhf.deb
Files:
 5fbeb95dc12dc0ec7a4f0c08a813496f 155934 debug extra python-cobra-dbgsym_0.4.1-1_armhf.deb
 260a87d8ec65395aa17509437546f72a 148114 python optional python-cobra_0.4.1-1_armhf.deb
 4fadc47195062d31fd596ec10db7cd65 181694 debug extra python3-cobra-dbgsym_0.4.1-1_armhf.deb
 844404a7c69b9641b72fe220d93094a5 143446 python optional python3-cobra_0.4.1-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python-cobra-dbgsym_0.4.1-1_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 155934 bytes: control archive=494 bytes.
     433 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-cobra-dbgsym
 Source: python-cobra
 Version: 0.4.1-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 190
 Depends: python-cobra (= 0.4.1-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 642271f7a1186ddcf66fc72d048ad0a2411a5e6f

drwxr-xr-x root/root         0 2016-03-30 11:40 ./
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/lib/debug/.build-id/64/
-rw-r--r-- root/root    183628 2016-03-30 11:40 ./usr/lib/debug/.build-id/64/2271f7a1186ddcf66fc72d048ad0a2411a5e6f.debug
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/share/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-03-30 11:40 ./usr/share/doc/python-cobra-dbgsym -> python-cobra


python-cobra_0.4.1-1_armhf.deb
------------------------------

 new debian package, version 2.0.
 size 148114 bytes: control archive=3130 bytes.
    1073 bytes,    21 lines      control              
    6334 bytes,    68 lines      md5sums              
     160 bytes,     9 lines   *  postinst             #!/bin/sh
     259 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Version: 0.4.1-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 719
 Depends: libc6 (>= 2.4), libglpk39 (>= 4.58), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~), python-cobra-data (= 0.4.1-1)
 Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
 Suggests: python-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

drwxr-xr-x root/root         0 2016-03-30 11:40 ./
drwxr-xr-x root/root         0 2016-03-30 11:39 ./usr/
drwxr-xr-x root/root         0 2016-03-30 11:38 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-30 11:38 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2016-03-30 11:38 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2016-03-30 11:38 ./usr/lib/python2.7/dist-packages/cobra-0.4.1.egg-info/
-rw-r--r-- root/root      4088 2016-03-30 11:38 ./usr/lib/python2.7/dist-packages/cobra-0.4.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2016-03-30 11:38 ./usr/lib/python2.7/dist-packages/cobra-0.4.1.egg-info/dependency_links.txt
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-rw-r--r-- root/root      2008 2016-03-25 03:03 ./usr/share/doc/python-cobra/copyright


python3-cobra-dbgsym_0.4.1-1_armhf.deb
--------------------------------------

 new debian package, version 2.0.
 size 181694 bytes: control archive=498 bytes.
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     106 bytes,     1 lines      md5sums              
 Package: python3-cobra-dbgsym
 Source: python-cobra
 Version: 0.4.1-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 215
 Depends: python3-cobra (= 0.4.1-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python3-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 9a7748439f60da026526fd104d625b733be872eb

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lrwxrwxrwx root/root         0 2016-03-30 11:40 ./usr/share/doc/python3-cobra-dbgsym -> python3-cobra


python3-cobra_0.4.1-1_armhf.deb
-------------------------------

 new debian package, version 2.0.
 size 143446 bytes: control archive=3098 bytes.
    1059 bytes,    22 lines      control              
    5850 bytes,    64 lines      md5sums              
     170 bytes,     9 lines   *  postinst             #!/bin/sh
     399 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.4.1-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 675
 Depends: libc6 (>= 2.4), libglpk39 (>= 4.58), python3 (<< 3.6), python3 (>= 3.5~), python3-six, python-cobra-data (= 0.4.1-1)
 Recommends: python3-numpy, python3-scipy, python3-pandas
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

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-rw-r--r-- root/root     35598 2016-03-22 22:08 ./usr/lib/python3/dist-packages/cobra/test/unit_tests.py
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/lib/python3/dist-packages/cobra/topology/
-rw-r--r-- root/root       251 2016-03-22 22:08 ./usr/lib/python3/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6564 2016-03-22 22:08 ./usr/lib/python3/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2016-03-22 22:08 ./usr/lib/python3/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2016-03-30 11:39 ./usr/share/
drwxr-xr-x root/root         0 2016-03-30 11:39 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-03-30 11:40 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root      1130 2016-03-25 03:32 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2008 2016-03-25 03:03 ./usr/share/doc/python3-cobra/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 41888
Build-Time: 615
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 798
Job: python-cobra_0.4.1-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1455
Source-Version: 0.4.1-1
Space: 41888
Status: successful
Version: 0.4.1-1
--------------------------------------------------------------------------------
Finished at 20160330-1140
Build needed 00:24:15, 41888k disc space

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