Build log for python-cobra (0.4.0b7-1+b1) on armhf

python-cobra → 0.4.0b7-1+b1 → armhf → 2016-03-01 23:11:28

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-02

+==============================================================================+
| python-cobra 0.4.0b7-1+b1 (armhf)                          01 Mar 2016 22:40 |
+==============================================================================+

Package: python-cobra
Version: 0.4.0b7-1+b1
Source Version: 0.4.0b7-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-cobra-8AQiTE/python-cobra-0.4.0b7' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-8AQiTE' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e00ff305-6fb3-47c7-9e09-123c755e5835' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8770 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.6 MB in 21s (909 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-cobra.git
Please use:
git clone git://anonscm.debian.org/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3091 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b7-1 (dsc) [2402 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b7-1 (tar) [3083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b7-1 (diff) [5580 B]
Fetched 3091 kB in 0s (8810 kB/s)
Download complete and in download only mode

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7SOi1R/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ Packages [508 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 44 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-7SOi1R/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 13601 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev, python-jsonschema (>> 2.5.0), python-numpy, python-scipy, python3-jsonschema (>> 2.5.0), python3-numpy, python3-scipy
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-Gqksl6/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Sources [282 B]
Get:5 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ Packages [602 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install python-cobra build dependencies (apt-based resolver)                 |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autotools-dev bsdmainutils cython cython3 debhelper dh-python
  dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-5
  groff-base intltool-debian libamd2.4.1 libarchive-zip-perl libblas-common
  libblas-dev libblas3 libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1
  libcholmod3.0.6 libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcxsparse3.1.4
  libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
  libgfortran-5-dev libgfortran3 libglib2.0-0 libglpk-dev libglpk39 libgmp-dev
  libgmpxx4ldbl libicu55 libklu1.3.3 liblapack-dev liblapack3 libldl2.2.1
  libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  libspqr2.0.2 libsqlite3-0 libssl1.0.2 libsuitesparse-dev
  libsuitesparseconfig4.4.6 libumfpack5.7.1 libunistring0 libxml2 man-db
  mime-support po-debconf python python-all python-all-dev python-decorator
  python-dev python-funcsigs python-functools32 python-jsonschema
  python-minimal python-mock python-numpy python-pbr python-pkg-resources
  python-scipy python-setuptools python-six python2.7 python2.7-dev
  python2.7-minimal python3 python3-all python3-all-dev python3-decorator
  python3-dev python3-jsonschema python3-minimal python3-numpy
  python3-pkg-resources python3-scipy python3-setuptools python3-six python3.4
  python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal
  zlib1g-dev
Suggested packages:
  wamerican | wordlist whois vacation cython-doc dh-make gettext-doc autopoint
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
  libgfortran3-dbg groff liblapack-doc-man liblapack-doc libiodbc2-dev
  libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev less www-browser
  libmail-box-perl python-doc python-tk python-funcsigs-doc python-mock-doc
  python-nose python-numpy-dbg python-numpy-doc python-scipy-doc
  python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
  python3-venv python3-nose python3-numpy-dbg python3.4-venv python3.4-doc
  python3.5-venv python3.5-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  xml-core libmail-sendmail-perl python-imaging
The following NEW packages will be installed:
  autotools-dev bsdmainutils cython cython3 debhelper dh-python
  dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-5
  groff-base intltool-debian libamd2.4.1 libarchive-zip-perl libblas-common
  libblas-dev libblas3 libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1
  libcholmod3.0.6 libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcxsparse3.1.4
  libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
  libgfortran-5-dev libgfortran3 libglib2.0-0 libglpk-dev libglpk39 libgmp-dev
  libgmpxx4ldbl libicu55 libklu1.3.3 liblapack-dev liblapack3 libldl2.2.1
  libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib
  libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
  libspqr2.0.2 libsqlite3-0 libssl1.0.2 libsuitesparse-dev
  libsuitesparseconfig4.4.6 libumfpack5.7.1 libunistring0 libxml2 man-db
  mime-support po-debconf python python-all python-all-dev python-decorator
  python-dev python-funcsigs python-functools32 python-jsonschema
  python-minimal python-mock python-numpy python-pbr python-pkg-resources
  python-scipy python-setuptools python-six python2.7 python2.7-dev
  python2.7-minimal python3 python3-all python3-all-dev python3-decorator
  python3-dev python3-jsonschema python3-minimal python3-numpy
  python3-pkg-resources python3-scipy python3-setuptools python3-six python3.4
  python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal
  sbuild-build-depends-python-cobra-dummy zlib1g-dev
0 upgraded, 115 newly installed, 0 to remove and 44 not upgraded.
Need to get 184 MB/184 MB of archives.
After this operation, 503 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Gqksl6/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [862 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-4 [381 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-4 [1092 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.10.2-1 [408 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2f-2 [883 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-4 [1818 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-4 [267 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-5 [553 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-5 [1333 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-1 [35.1 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-5 [2063 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-5 [194 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-1 [18.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-1 [21.5 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-minimal armhf 3.4.4-2 [494 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf python3.4-minimal armhf 3.4.4-2 [1268 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-4 [907 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.2+git16-ga8fbae1-1+rpi1 [1448 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.23.2+git16-ga8fbae1-1+rpi1 [1865 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.015-1 [11.0 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
Get:47 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-8+rpi1 [153 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-8+rpi1 [183 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-8+rpi1 [23.7 MB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4.4.6 armhf 1:4.4.6-1 [16.6 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libamd2.4.1 armhf 1:4.4.6-1 [25.8 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libbtf1.2.1 armhf 1:4.4.6-1 [17.1 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libcamd2.4.1 armhf 1:4.4.6-1 [23.5 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libccolamd2.9.1 armhf 1:4.4.6-1 [24.4 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libcolamd2.9.1 armhf 1:4.4.6-1 [21.5 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libcholmod3.0.6 armhf 1:4.4.6-1 [192 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libcsparse3.1.4 armhf 1:4.4.6-1 [31.2 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3.1.4 armhf 1:4.4.6-1 [43.7 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libglpk39 armhf 4.58-2 [322 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.0+dfsg-2 [21.4 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.0+dfsg-2 [560 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libklu1.3.3 armhf 1:4.4.6-1 [45.6 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libldl2.2.1 armhf 1:4.4.6-1 [16.9 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libumfpack5.7.1 armhf 1:4.4.6-1 [123 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libspqr2.0.2 armhf 1:4.4.6-1 [61.0 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.0-2 [1355 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.4.6-1 [574 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.58-2 [358 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-4 [27.1 MB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.1-5 [1160 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.1-5 [36.4 MB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.5.1-1 [18.6 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-stdlib armhf 3.4.4-2 [2061 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libpython3.4 armhf 3.4.4-2 [1095 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-dev armhf 3.4.4-2 [33.5 MB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.5.1-1 [974 B]
Get:88 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:89 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-4 [279 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:91 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:92 http://172.17.0.1/private stretch-staging/main armhf python-decorator all 4.0.6-1 [12.7 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf python-funcsigs all 0.4-2 [12.8 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf python-functools32 all 3.2.3.2-2 [10.8 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-2 [14.2 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf python-pbr all 1.8.0-4 [47.1 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf python-mock all 1.3.0-2.1 [58.2 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf python-jsonschema all 2.5.1-4 [49.2 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.10.4-2 [1551 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf python3.4 armhf 3.4.4-2 [229 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.5.1-1 [942 B]
Get:104 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.1-5 [418 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.5.1-1 [1154 B]
Get:106 http://172.17.0.1/private stretch-staging/main armhf python3.4-dev armhf 3.4.4-2 [418 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.5.1-1 [972 B]
Get:108 http://172.17.0.1/private stretch-staging/main armhf python3-decorator all 4.0.6-1 [12.8 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf python3-jsonschema all 2.5.1-4 [48.9 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf python3-numpy armhf 1:1.10.4-2 [1644 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 18.8-1 [71.1 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 18.8-1 [120 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-2 [14.2 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf python-scipy armhf 0.17.0-1 [7841 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf python3-scipy armhf 0.17.0-1 [8101 kB]
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update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode
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update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up python-numpy (1:1.10.4-2) ...
Setting up python-pkg-resources (18.8-1) ...
Setting up python-setuptools (18.8-1) ...
Setting up python3.4 (3.4.4-2) ...
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Setting up dh-python (2.20151103) ...
Setting up python3 (3.5.1-1) ...
Setting up cython3 (0.23.2+git16-ga8fbae1-1+rpi1) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Setting up debhelper (9.20160115) ...
Setting up python3-all (3.5.1-1) ...
Setting up python3-dev (3.5.1-1) ...
Setting up python3-all-dev (3.5.1-1) ...
Setting up python3-decorator (4.0.6-1) ...
Setting up python3-jsonschema (2.5.1-4) ...
Setting up python3-numpy (1:1.10.4-2) ...
Setting up python3-pkg-resources (18.8-1) ...
Setting up python3-setuptools (18.8-1) ...
Setting up python3-six (1.10.0-2) ...
Setting up python3-scipy (0.17.0-1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-8+rpi1 gcc-5_5.3.1-8+rpi1 libc6-dev_2.21-7 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-8+rpi1 cython_0.23.2+git16-ga8fbae1-1+rpi1 cython3_0.23.2+git16-ga8fbae1-1+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-python_2.20151103 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-8+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-8+rpi1 gcc-5-base_5.3.1-8+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-8+rpi1 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libamd2.4.1_1:4.4.6-1 libapparmor1_2.10-3 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libasan1_4.9.3-10 libasan2_5.3.1-8+rpi1 libatomic1_5.3.1-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblas-common_3.6.0-2 libblas-dev_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libbtf1.2.1_1:4.4.6-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcamd2.4.1_1:4.4.6-1 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-8+rpi1 libccolamd2.9.1_1:4.4.6-1 libcholmod3.0.6_1:4.4.6-1 libcolamd2.9.1_1:4.4.6-1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcsparse3.1.4_1:4.4.6-1 libcxsparse3.1.4_1:4.4.6-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgc1c2_1:7.4.2-7.3 libgcc-4.9-dev_4.9.3-10 libgcc-5-dev_5.3.1-8+rpi1 libgcc1_1:5.3.1-8+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-8+rpi1 libgfortran3_5.3.1-8+rpi1 libglib2.0-0_2.46.2-3 libglpk-dev_4.58-2 libglpk39_4.58-2 libgmp-dev_2:6.1.0+dfsg-2 libgmp10_2:6.1.0+dfsg-2 libgmpxx4ldbl_2:6.1.0+dfsg-2 libgomp1_5.3.1-8+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libklu1.3.3_1:4.4.6-1 libkmod2_22-1 liblapack-dev_3.6.0-2 liblapack3_3.6.0-2 libldl2.2.1_1:4.4.6-1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpython-all-dev_2.7.11-1 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-4 libpython2.7-dev_2.7.11-4 libpython2.7-minimal_2.7.11-4 libpython2.7-stdlib_2.7.11-4 libpython3-all-dev_3.5.1-1 libpython3-dev_3.5.1-1 libpython3-stdlib_3.5.1-1 libpython3.4_3.4.4-2 libpython3.4-dev_3.4.4-2 libpython3.4-minimal_3.4.4-2 libpython3.4-stdlib_3.4.4-2 libpython3.5_3.5.1-5 libpython3.5-dev_3.5.1-5 libpython3.5-minimal_3.5.1-5 libpython3.5-stdlib_3.5.1-5 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-3 libspqr2.0.2_1:4.4.6-1 libsqlite3-0_3.10.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2f-2 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 libsuitesparse-dev_1:4.4.6-1 libsuitesparseconfig4.4.6_1:4.4.6-1 libsystemd0_228-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-8+rpi1 libudev1_228-6 libumfpack5.7.1_1:4.4.6-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-all_2.7.11-1 python-all-dev_2.7.11-1 python-decorator_4.0.6-1 python-dev_2.7.11-1 python-funcsigs_0.4-2 python-functools32_3.2.3.2-2 python-jsonschema_2.5.1-4 python-minimal_2.7.11-1 python-mock_1.3.0-2.1 python-numpy_1:1.10.4-2 python-pbr_1.8.0-4 python-pkg-resources_18.8-1 python-scipy_0.17.0-1 python-setuptools_18.8-1 python-six_1.10.0-2 python2.7_2.7.11-4 python2.7-dev_2.7.11-4 python2.7-minimal_2.7.11-4 python3_3.5.1-1 python3-all_3.5.1-1 python3-all-dev_3.5.1-1 python3-decorator_4.0.6-1 python3-dev_3.5.1-1 python3-jsonschema_2.5.1-4 python3-minimal_3.5.1-1 python3-numpy_1:1.10.4-2 python3-pkg-resources_18.8-1 python3-scipy_0.17.0-1 python3-setuptools_18.8-1 python3-six_1.10.0-2 python3.4_3.4.4-2 python3.4-dev_3.4.4-2 python3.4-minimal_3.4.4-2 python3.5_3.5.1-5 python3.5-dev_3.5.1-5 python3.5-minimal_3.5.1-5 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Feb 20 09:08:19 2016 UTC using RSA key ID AFE826FB
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.0b7-1.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.0b7
dpkg-source: info: unpacking python-cobra_0.4.0b7.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.0b7-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying fix-test-skips.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.4.0b7-1+b1

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e00ff305-6fb3-47c7-9e09-123c755e5835
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package python-cobra
dpkg-buildpackage: source version 0.4.0b7-1+b1
dpkg-buildpackage: source distribution stretch-staging
 dpkg-source --before-build python-cobra-0.4.0b7
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.4 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.4' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.4 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3.4 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/cobra
creating build/temp.linux-armv7l-3.4/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
I: pybuild base:184: /usr/bin/python3 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/design.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/solvers.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/cobra
creating build/temp.linux-armv7l-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.so
cobra/io/sbml3.py:23 [1;31mUserWarning[0m: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... cobra/io/mat.py:145 [1;31mFutureWarning[0m: elementwise == comparison failed and returning scalar instead; this will raise an error or perform elementwise comparison in the future.
ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 61.196s

OK (skipped=10)
I: pybuild base:184: python3.4 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.cpython-34m.so
cobra/io/sbml3.py:23 [1;31mUserWarning[0m: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... cobra/io/mat.py:145 [1;31mFutureWarning[0m: elementwise == comparison failed and returning scalar instead; this will raise an error or perform elementwise comparison in the future.
ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 64.448s

OK (skipped=14)
I: pybuild base:184: python3.5 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing dependency_links to cobra.egg-info/dependency_links.txt
writing top-level names to cobra.egg-info/top_level.txt
writing cobra.egg-info/PKG-INFO
writing requirements to cobra.egg-info/requires.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
cobra/io/sbml3.py:23 [1;31mUserWarning[0m: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... ok
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... ok
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'no qp support'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped "can't test plots without matplotlib"
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... cobra/io/mat.py:145 [1;31mFutureWarning[0m: elementwise == comparison failed and returning scalar instead; this will raise an error or perform elementwise comparison in the future.
ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write (cobra.test.io_tests.TestCobraIOmat) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... ok
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 64.476s

OK (skipped=14)
 fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2,python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/design.py to design.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/manipulation.py to manipulation.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.0b7.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3.4 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
renaming extension cglpk.cpython-34m.so -> cglpk.cpython-34m-arm-linux-gnueabihf.so
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.4/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/version.py to version.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/DictList.py to DictList.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Formula.py to Formula.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Gene.py to Gene.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Model.py to Model.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Object.py to Object.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Reaction.py to Reaction.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Solution.py to Solution.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Species.py to Species.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/json.py to json.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/mat.py to mat.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml.py to sbml.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml3.py to sbml3.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/delete.py to delete.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/modify.py to modify.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/validate.py to validate.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/coin.py to coin.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/esolver.py to esolver.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/mosek.py to mosek.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/parameters.py to parameters.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/design.py to design.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/io_tests.py to io_tests.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/manipulation.py to manipulation.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/solvers.py to solvers.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/__init__.py to __init__.cpython-34.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-34.pyc
running install_egg_info
running egg_info
writing dependency_links to cobra.egg-info/dependency_links.txt
writing cobra.egg-info/PKG-INFO
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra-0.4.0b7.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/design.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/io_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/solvers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/unit_tests.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/flux_analysis.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/design.py to design.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/io_tests.py to io_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/manipulation.py to manipulation.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/solvers.py to solvers.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.4.0b7.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs -Xexample
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so were not linked against libpthread.so.0 (they use none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.4.0b7-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.4.0b7-1+b1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.4.0b7-1+b1_armhf.changes
dpkg-genchanges: warning: package python-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package python3-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.4.0b7
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160301-2307

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.4.0b7-1+b1_armhf.changes:
----------------------------------------

Format: 1.8
Date: Sat, 20 Feb 2016 01:05:24 -0800
Source: python-cobra (0.4.0b7-1)
Binary: python-cobra python3-cobra python-cobra-data
Binary-Only: yes
Architecture: armhf
Version: 0.4.0b7-1+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.4.0b7-1+b1) stretch-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
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 8a49fe18e3404bff8d4e7fe082547bbdf3d652fa 138434 python-cobra_0.4.0b7-1+b1_armhf.deb
 1f8ed115740ab80e9c78d1659c377319e83242c0 307090 python3-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
 1add5a38e7112cdcb3809b60f1859eb148f794e3 147232 python3-cobra_0.4.0b7-1+b1_armhf.deb
Checksums-Sha256:
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 c33e8aba4a5bbb8446f86fde12ccd97b6ef327c24fa9f24b053ed526a8a29dcf 138434 python-cobra_0.4.0b7-1+b1_armhf.deb
 97fc685d9627d9302fca4a270bd57b0c7583de86e2b020329fa0d87506d8e2ab 307090 python3-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
 bbc09a7767a7332e2611e1099ec8fb9e7f1bde4e0ae8f85a31b2145569e5f69b 147232 python3-cobra_0.4.0b7-1+b1_armhf.deb
Files:
 dbadbdcf1e03083c54b6143217a2b4f7 137446 debug extra python-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
 ade561c433b1340d8d256c09f8455840 138434 python optional python-cobra_0.4.0b7-1+b1_armhf.deb
 a9c5dddb6b6973b843b2a5ca6029a55d 307090 debug extra python3-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
 7765d0260bfb8241a31a3e2e1111ee27 147232 python optional python3-cobra_0.4.0b7-1+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
------------------------------------------

 new debian package, version 2.0.
 size 137446 bytes: control archive=502 bytes.
     455 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-cobra-dbgsym
 Source: python-cobra (0.4.0b7-1)
 Version: 0.4.0b7-1+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 169
 Depends: python-cobra (= 0.4.0b7-1+b1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 57f08d08e6d9cb797b7909aa254e7d9a17e15a83

drwxr-xr-x root/root         0 2016-03-01 23:07 ./
drwxr-xr-x root/root         0 2016-03-01 23:07 ./usr/
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-03-01 23:07 ./usr/lib/debug/.build-id/57/
-rw-r--r-- root/root    162116 2016-03-01 23:07 ./usr/lib/debug/.build-id/57/f08d08e6d9cb797b7909aa254e7d9a17e15a83.debug
drwxr-xr-x root/root         0 2016-03-01 23:07 ./usr/share/
drwxr-xr-x root/root         0 2016-03-01 23:07 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-03-01 23:07 ./usr/share/doc/python-cobra-dbgsym -> python-cobra


python-cobra_0.4.0b7-1+b1_armhf.deb
-----------------------------------

 new debian package, version 2.0.
 size 138434 bytes: control archive=3142 bytes.
    1113 bytes,    22 lines      control              
    6332 bytes,    68 lines      md5sums              
     160 bytes,     9 lines   *  postinst             #!/bin/sh
     259 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Source: python-cobra (0.4.0b7-1)
 Version: 0.4.0b7-1+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 679
 Depends: libc6 (>= 2.4), libglpk39 (>= 4.58), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~), python-cobra-data (= 0.4.0b7-1)
 Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
 Suggests: python-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

drwxr-xr-x root/root         0 2016-03-01 23:07 ./
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/
drwxr-xr-x root/root         0 2016-03-01 23:04 ./usr/lib/
drwxr-xr-x root/root         0 2016-03-01 23:04 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2016-03-01 23:04 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2016-03-01 23:04 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b7.egg-info/
-rw-r--r-- root/root      4090 2016-03-01 23:04 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b7.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2016-03-01 23:04 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b7.egg-info/dependency_links.txt
-rw-r--r-- root/root       226 2016-03-01 23:06 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b7.egg-info/requires.txt
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python3-cobra-dbgsym_0.4.0b7-1+b1_armhf.deb
-------------------------------------------

 new debian package, version 2.0.
 size 307090 bytes: control archive=565 bytes.
     499 bytes,    13 lines      control              
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 Package: python3-cobra-dbgsym
 Source: python-cobra (0.4.0b7-1)
 Version: 0.4.0b7-1+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 369
 Depends: python3-cobra (= 0.4.0b7-1+b1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python3-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: b46cb0c5dee4af1cfa0ec27118ef37db2045f29b ee093532b2b3a20bd75bf3a5e9be71f4fdce3749

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lrwxrwxrwx root/root         0 2016-03-01 23:07 ./usr/share/doc/python3-cobra-dbgsym -> python3-cobra


python3-cobra_0.4.0b7-1+b1_armhf.deb
------------------------------------

 new debian package, version 2.0.
 size 147232 bytes: control archive=3160 bytes.
    1078 bytes,    22 lines      control              
    6072 bytes,    66 lines      md5sums              
     170 bytes,     9 lines   *  postinst             #!/bin/sh
     399 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra (0.4.0b7-1)
 Version: 0.4.0b7-1+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 770
 Depends: libc6 (>= 2.4), libglpk39 (>= 4.58), python3 (<< 3.6), python3 (>= 3.4~), python3-six, python-cobra-data (= 0.4.0b7-1)
 Recommends: python3-numpy, python3-scipy, python3-pandas
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

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drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/lib/python3/dist-packages/cobra/test/
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-rw-r--r-- root/root     12331 2016-02-16 22:58 ./usr/lib/python3/dist-packages/cobra/test/solvers.py
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drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/lib/python3/dist-packages/cobra/topology/
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drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/share/
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-03-01 23:06 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root       226 2016-03-01 22:54 ./usr/share/doc/python3-cobra/changelog.Debian.armhf.gz
-rw-r--r-- root/root      1029 2016-03-01 22:54 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2010 2016-02-20 04:58 ./usr/share/doc/python3-cobra/copyright


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 54624
Build-Time: 787
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 756
Job: python-cobra_0.4.0b7-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1584
Source-Version: 0.4.0b7-1
Space: 54624
Status: successful
Version: 0.4.0b7-1+b1
--------------------------------------------------------------------------------
Finished at 20160301-2307
Build needed 00:26:24, 54624k disc space
Raspbian Package Auto-Building

Build log for python-cobra (0.4.0b7-1+b1) on armhf
