Raspbian Package Auto-Building

Build log for python-cobra (0.4.0b6-1) on armhf

python-cobra → 0.4.0b6-1 → armhf → 2015-12-27 06:11:10 

sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ python-cobra 0.4.0b6-1 (armhf)                             27 Dec 2015 05:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: python-cobra
Version: 0.4.0b6-1
Source Version: 0.4.0b6-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-cobra-tpo4zZ/python-cobra-0.4.0b6' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-cobra-tpo4zZ' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-dc53e1c8-2174-457e-8015-c0b9a59783f8' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8572 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.6 MB]
Fetched 19.2 MB in 20s (929 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-cobra.git
Please use:
git clone git://anonscm.debian.org/debian-med/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2245 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b6-1 (dsc) [2283 B]
Get:2 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b6-1 (tar) [2237 kB]
Get:3 http://172.17.0.1/private stretch-staging/main python-cobra 0.4.0b6-1 (diff) [4952 B]
Fetched 2245 kB in 0s (9715 kB/s)
Download complete and in download only mode

Check architectures
───────────────────


Check dependencies
──────────────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-kO30iU/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Sources [208 B]
Get:5 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-kO30iU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12276 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/«BUILDDIR»/resolver-jlEpgy/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Sources [365 B]
Get:5 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ Packages [624 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-cobra build dependencies (apt-based resolver)                 │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  bsdmainutils cpp cython cython3 debhelper dh-python dh-strip-nondeterminism
  file gcc gettext gettext-base gfortran gfortran-5 groff-base intltool-debian
  libamd2.4.1 libarchive-zip-perl libblas-common libblas-dev libblas3
  libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6 libcolamd2.9.1
  libcroco3 libcsparse3.1.4 libcxsparse3.1.4 libexpat1 libexpat1-dev libffi6
  libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0
  libglpk-dev libglpk36 libgmp-dev libgmpxx4ldbl libicu55 libklu1.3.3
  liblapack-dev liblapack3 libldl2.2.1 libltdl7 libmagic1 libmpdec2
  libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7
  libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev
  libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev
  libpython3.5-minimal libpython3.5-stdlib libspqr2.0.1 libsqlite3-0
  libssl1.0.2 libsuitesparse-dev libsuitesparseconfig4.4.5 libtimedate-perl
  libumfpack5.7.1 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-dev python-minimal python-pkg-resources
  python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
  python3 python3-all python3-all-dev python3-dev python3-minimal
  python3-pkg-resources python3-setuptools python3-six python3.4 python3.4-dev
  python3.4-minimal python3.5 python3.5-dev python3.5-minimal zlib1g-dev
Suggested packages:
  wamerican | wordlist whois vacation cpp-doc cython-doc dh-make gcc-multilib
  manpages-dev autoconf automake libtool flex bison gdb gcc-doc gettext-doc
  autopoint libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
  libgfortran3-dbg groff libiodbc2-dev libmysqlclient-dev gmp-doc libgmp10-doc
  libmpfr-dev less www-browser libmail-box-perl python-doc python-tk
  python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
  python3-venv python3.4-venv python3.4-doc python3.5-venv python3.5-doc
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils cython cython3 debhelper dh-python dh-strip-nondeterminism file
  gettext gettext-base gfortran gfortran-5 groff-base intltool-debian
  libamd2.4.1 libarchive-zip-perl libblas-common libblas-dev libblas3
  libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6 libcolamd2.9.1
  libcroco3 libcsparse3.1.4 libcxsparse3.1.4 libexpat1 libexpat1-dev libffi6
  libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0
  libglpk-dev libglpk36 libgmp-dev libgmpxx4ldbl libicu55 libklu1.3.3
  liblapack-dev liblapack3 libldl2.2.1 libltdl7 libmagic1 libmpdec2
  libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7
  libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev
  libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev
  libpython3.5-minimal libpython3.5-stdlib libspqr2.0.1 libsqlite3-0
  libssl1.0.2 libsuitesparse-dev libsuitesparseconfig4.4.5 libtimedate-perl
  libumfpack5.7.1 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-dev python-minimal python-pkg-resources
  python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
  python3 python3-all python3-all-dev python3-dev python3-minimal
  python3-pkg-resources python3-setuptools python3-six python3.4 python3.4-dev
  python3.4-minimal python3.5 python3.5-dev python3.5-minimal
  sbuild-build-depends-python-cobra-dummy zlib1g-dev
The following packages will be upgraded:
  cpp gcc
2 upgraded, 103 newly installed, 0 to remove and 7 not upgraded.
Need to get 162 MB/162 MB of archives.
After this operation, 389 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-jlEpgy/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [860 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-4 [1084 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-2 [380 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-2 [1081 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.9.2-1 [404 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2e-1 [883 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-2 [1836 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-2 [266 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-minimal armhf 3.4.4~rc1-1 [494 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python3.4-minimal armhf 3.4.4~rc1-1 [1268 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.4.3-7 [35.1 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-stdlib armhf 3.4.4~rc1-1 [2060 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf python3.4 armhf 3.4.4~rc1-1 [229 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.4.3-7 [18.4 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.4.3-7 [21.3 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-2+rpi1 [548 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-2+rpi1 [1152 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.6-1 [119 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-2 [909 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-6 [7379 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf cpp armhf 4:5.3.1-1 [18.2 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.2+git16-ga8fbae1-1 [1444 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf cython3 armhf 0.23.2+git16-ga8fbae1-1 [1450 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-1 [2482 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.6-1 [1393 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.18 [248 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.55-1 [97.4 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:49 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151225 [830 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf gcc armhf 4:5.3.1-1 [5224 B]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-3+rpi1 [154 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-3+rpi1 [183 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-3+rpi1 [23.7 MB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1 [1350 B]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4.4.5 armhf 1:4.4.5-2 [16.4 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libamd2.4.1 armhf 1:4.4.5-2 [25.7 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 1.2.20110419-11 [8490 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 1.2.20110419-11 [118 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 1.2.20110419-11 [113 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libbtf1.2.1 armhf 1:4.4.5-2 [16.9 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libcamd2.4.1 armhf 1:4.4.5-2 [23.3 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libccolamd2.9.1 armhf 1:4.4.5-2 [24.2 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libcolamd2.9.1 armhf 1:4.4.5-2 [21.3 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.5.0-5 [1294 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libcholmod3.0.6 armhf 1:4.4.5-2 [192 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libcsparse3.1.4 armhf 1:4.4.5-2 [31.1 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3.1.4 armhf 1:4.4.5-2 [43.7 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libglpk36 armhf 4.57-1+b1 [352 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libgmpxx4ldbl armhf 2:6.1.0+dfsg-2 [21.4 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libgmp-dev armhf 2:6.1.0+dfsg-2 [560 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libklu1.3.3 armhf 1:4.4.5-2 [45.4 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libldl2.2.1 armhf 1:4.4.5-2 [16.7 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libumfpack5.7.1 armhf 1:4.4.5-2 [122 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libspqr2.0.1 armhf 1:4.4.5-2 [60.8 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.5.0-5 [1267 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.4.5-2 [574 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libglpk-dev armhf 4.57-1+b1 [384 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-2 [27.1 MB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libpython3.4 armhf 3.4.4~rc1-1 [1095 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libpython3.4-dev armhf 3.4.4~rc1-1 [33.5 MB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libpython3-dev armhf 3.4.3-7 [18.5 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-2+rpi1 [2002 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpython3.5 armhf 3.5.1-2+rpi1 [1159 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-dev armhf 3.5.1-2+rpi1 [33.8 MB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libpython3-all-dev armhf 3.4.3-7 [970 B]
Get:90 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:91 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-2 [279 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:93 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:94 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-1 [14.1 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-2+rpi1 [192 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf python3-all armhf 3.4.3-7 [942 B]
Get:99 http://172.17.0.1/private stretch-staging/main armhf python3.4-dev armhf 3.4.4~rc1-1 [418 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf python3-dev armhf 3.4.3-7 [1152 B]
Get:101 http://172.17.0.1/private stretch-staging/main armhf python3.5-dev armhf 3.5.1-2+rpi1 [430 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf python3-all-dev armhf 3.4.3-7 [972 B]
Get:103 http://172.17.0.1/private stretch-staging/main armhf python3-pkg-resources all 18.8-1 [71.1 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf python3-setuptools all 18.8-1 [120 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf python3-six all 1.10.0-1 [14.2 kB]
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Processing triggers for libc-bin (2.21-4) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up dh-strip-nondeterminism (0.014-1) ...
Setting up debhelper (9.20151225) ...
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Processing triggers for libc-bin (2.21-4) ...
W: No sandbox user '_apt' on the system, can not drop privileges

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20151209-1 dpkg-dev_1.18.3 g++-5_5.3.1-3+rpi1 gcc-5_5.3.1-3+rpi1 libc6-dev_2.21-4 libstdc++-5-dev_5.3.1-3+rpi1 libstdc++6_5.3.1-3+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.1.4 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.90.20151209-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1 cpp-5_5.3.1-3+rpi1 cython_0.23.2+git16-ga8fbae1-1 cython3_0.23.2+git16-ga8fbae1-1 dash_0.5.7-4 debconf_1.5.58 debconf-i18n_1.5.58 debfoster_2.7-2 debhelper_9.20151225 debianutils_4.5.1 dh-python_2.20151103 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.110-2 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.2.1-4+rpi3 g++-5_5.3.1-3+rpi1 gcc_4:5.3.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1+b1 gcc-4.9-base_4.9.3-5+b1 gcc-5_5.3.1-3+rpi1 gcc-5-base_5.3.1-3+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gfortran_4:5.3.1-1 gfortran-5_5.3.1-3+rpi1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libamd2.4.1_1:4.4.5-2 libapparmor1_2.10-2+b2 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.4 libarchive-zip-perl_1.55-1 libasan2_5.3.1-3+rpi1 libatomic1_5.3.1-3+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblas-common_1.2.20110419-11 libblas-dev_1.2.20110419-11 libblas3_1.2.20110419-11 libblkid1_2.27.1-1 libbtf1.2.1_1:4.4.5-2 libbz2-1.0_1.0.6-8 libc-bin_2.21-4 libc-dev-bin_2.21-4 libc6_2.21-4 libc6-dev_2.21-4 libcamd2.4.1_1:4.4.5-2 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-3+rpi1 libccolamd2.9.1_1:4.4.5-2 libcholmod3.0.6_1:4.4.5-2 libcolamd2.9.1_1:4.4.5-2 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libcsparse3.1.4_1:4.4.5-2 libcxsparse3.1.4_1:4.4.5-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.200 libdevmapper1.02.1_2:1.02.110-2 libdpkg-perl_1.18.3 libdrm2_2.4.65-3 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-3+rpi1 libgcc1_1:5.3.1-3+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-3+rpi1 libgfortran3_5.3.1-3+rpi1 libglib2.0-0_2.46.2-1 libglpk-dev_4.57-1+b1 libglpk36_4.57-1+b1 libgmp-dev_2:6.1.0+dfsg-2 libgmp10_2:6.1.0+dfsg-2 libgmpxx4ldbl_2:6.1.0+dfsg-2 libgomp1_5.3.1-3+rpi1 libgpg-error0_1.20-1 libicu55_55.1-6 libisl13_0.14-2 libisl15_0.15-3 libklibc_2.0.4-4+rpi1 libklu1.3.3_1:4.4.5-2 libkmod2_21-1 liblapack-dev_3.5.0-5 liblapack3_3.5.0-5 libldl2.2.1_1:4.4.5-2 liblocale-gettext-perl_1.07-1 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libpython-all-dev_2.7.11-1 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-2 libpython2.7-dev_2.7.11-2 libpython2.7-minimal_2.7.11-2 libpython2.7-stdlib_2.7.11-2 libpython3-all-dev_3.4.3-7 libpython3-dev_3.4.3-7 libpython3-stdlib_3.4.3-7 libpython3.4_3.4.4~rc1-1 libpython3.4-dev_3.4.4~rc1-1 libpython3.4-minimal_3.4.4~rc1-1 libpython3.4-stdlib_3.4.4~rc1-1 libpython3.5_3.5.1-2+rpi1 libpython3.5-dev_3.5.1-2+rpi1 libpython3.5-minimal_3.5.1-2+rpi1 libpython3.5-stdlib_3.5.1-2+rpi1 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-1 libspqr2.0.1_1:4.4.5-2 libsqlite3-0_3.9.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2e-1 libstdc++-5-dev_5.3.1-3+rpi1 libstdc++6_5.3.1-3+rpi1 libsuitesparse-dev_1:4.4.5-2 libsuitesparseconfig4.4.5_1:4.4.5-2 libsystemd0_228-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-3+rpi1 libudev1_228-2 libumfpack5.7.1_1:4.4.5-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-1 multiarch-support_2.21-4 nano_2.4.2-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.11-1 python-all_2.7.11-1 python-all-dev_2.7.11-1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python-pkg-resources_18.8-1 python-setuptools_18.8-1 python-six_1.10.0-1 python2.7_2.7.11-2 python2.7-dev_2.7.11-2 python2.7-minimal_2.7.11-2 python3_3.4.3-7 python3-all_3.4.3-7 python3-all-dev_3.4.3-7 python3-dev_3.4.3-7 python3-minimal_3.4.3-7 python3-pkg-resources_18.8-1 python3-setuptools_18.8-1 python3-six_1.10.0-1 python3.4_3.4.4~rc1-1 python3.4-dev_3.4.4~rc1-1 python3.4-minimal_3.4.4~rc1-1 python3.5_3.5.1-2+rpi1 python3.5-dev_3.5.1-2+rpi1 python3.5-minimal_3.5.1-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Dec 22 06:14:50 2015 UTC using RSA key ID AFE826FB
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.0b6-1.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.0b6
dpkg-source: info: unpacking python-cobra_0.4.0b6.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.0b6-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying testsuite-check-jsonschema.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-dc53e1c8-2174-457e-8015-c0b9a59783f8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package python-cobra
dpkg-buildpackage: source version 0.4.0b6-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build python-cobra-0.4.0b6
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
I: pybuild base:184: python3.4 setup.py clean 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.4' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.5 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:184: python3.4 setup.py config 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/design
copying cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/design
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/design.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/manipulation.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:184: /usr/bin/python3.5 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/design
copying cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/design
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/design.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/manipulation.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.5
creating build/temp.linux-armv7l-3.5/cobra
creating build/temp.linux-armv7l-3.5/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
I: pybuild base:184: /usr/bin/python3 setup.py build 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/design
copying cobra/design/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/design
copying cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/design
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/design.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/manipulation.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/cobra
creating build/temp.linux-armv7l-3.4/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.so
cobra/core/__init__.py:19 UserWarning: ArrayBasedModel requires scipy
cobra/io/sbml3.py:23 UserWarning: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 UserWarning: cobra.io.sbml requires libsbml
cobra/io/__init__.py:19 UserWarning: cobra.io.mat requires scipy
cobra/flux_analysis/essentiality.py:5 UserWarning: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 UserWarning: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'phase plane requires numpy'
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 44.911s

OK (skipped=33)
I: pybuild base:184: python3.5 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
cobra/core/__init__.py:19 UserWarning: ArrayBasedModel requires scipy
cobra/io/sbml3.py:23 UserWarning: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 UserWarning: cobra.io.sbml requires libsbml
cobra/io/__init__.py:19 UserWarning: cobra.io.mat requires scipy
cobra/flux_analysis/essentiality.py:5 UserWarning: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 UserWarning: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'phase plane requires numpy'
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 53.574s

OK (skipped=37)
I: pybuild base:184: python3.4 setup.py test 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing top-level names to cobra.egg-info/top_level.txt
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.cpython-34m.so
cobra/core/__init__.py:19 UserWarning: ArrayBasedModel requires scipy
cobra/io/sbml3.py:23 UserWarning: Install lxml for faster SBML I/O
cobra/io/__init__.py:10 UserWarning: cobra.io.sbml requires libsbml
cobra/io/__init__.py:19 UserWarning: cobra.io.mat requires scipy
cobra/flux_analysis/essentiality.py:5 UserWarning: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 UserWarning: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testDir (cobra.test.unit_tests.TestDictList)
makes sure tab complete will work ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testSortandReverse (cobra.test.unit_tests.TestDictList) ... ok
testUnion (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_phenotype_phase_plane (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'phase plane requires numpy'
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write_empty (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_empty (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write_empty (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write_empty (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_bad_valiation (cobra.test.io_tests.TestCobraSBMLValidation) ... ok
test_dual (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_lp (cobra.test.design.TestDesignAlgorithms) ... ok
test_dual_integer_vars_as_mip (cobra.test.design.TestDesignAlgorithms) ... ok
test_optknock (cobra.test.design.TestDesignAlgorithms) ... ok
test_SBO_annotation (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form (cobra.test.manipulation.TestManipulation) ... ok
test_canonical_form_minimize (cobra.test.manipulation.TestManipulation) ... ok
test_escape_ids (cobra.test.manipulation.TestManipulation) ... ok
test_gene_knockout_computation (cobra.test.manipulation.TestManipulation) ... ok
test_modify_reversible (cobra.test.manipulation.TestManipulation) ... ok
test_remove_genes (cobra.test.manipulation.TestManipulation) ... ok
test_validate_formula_compartment (cobra.test.manipulation.TestManipulation) ... ok
test_validate_mass_balance (cobra.test.manipulation.TestManipulation) ... ok
test_validate_reaction_bounds (cobra.test.manipulation.TestManipulation) ... ok

----------------------------------------------------------------------
Ran 122 tests in 45.984s

OK (skipped=37)
 fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2,python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /«PKGBUILDDIR»/debian/python-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/design/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/validate.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/design.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/manipulation.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py to design_algorithms.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py to annotate.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py to validate.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/design.py to design.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/manipulation.py to manipulation.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3.5 setup.py install --root /«PKGBUILDDIR»/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so
running install_lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/design/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/manipulation/validate.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/design.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/manipulation.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/version.py to version.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/DictList.py to DictList.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Formula.py to Formula.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Gene.py to Gene.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Model.py to Model.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Object.py to Object.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Reaction.py to Reaction.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Solution.py to Solution.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/Species.py to Species.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/core/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/json.py to json.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/mat.py to mat.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml.py to sbml.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/io/sbml3.py to sbml3.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/delete.py to delete.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/modify.py to modify.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/manipulation/validate.py to validate.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/coin.py to coin.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/esolver.py to esolver.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/mosek.py to mosek.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/parameters.py to parameters.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/design.py to design.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/manipulation.py to manipulation.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/solvers.py to solvers.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/io_tests.py to io_tests.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/__init__.py to __init__.cpython-35.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-35.pyc
running install_egg_info
running egg_info
writing top-level names to cobra.egg-info/top_level.txt
writing requirements to cobra.egg-info/requires.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing cobra.egg-info/PKG-INFO
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.5/dist-packages/cobra-0.4.0b6.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:184: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/python3-cobra 
Could not autodetect include and library dirs: Command '['which', 'glpsol']' returned non-zero exit status 1
Compiling cobra/solvers/cglpk.pyx because it changed.
[1/1] Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
running install_lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/design/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/design/design_algorithms.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/annotate.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/validate.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
renaming extension cglpk.cpython-34m.so -> cglpk.cpython-34m-arm-linux-gnueabihf.so
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/design.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/manipulation.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid0.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/invalid2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/version.py to version.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/DictList.py to DictList.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Formula.py to Formula.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Gene.py to Gene.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Model.py to Model.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Object.py to Object.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Reaction.py to Reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Solution.py to Solution.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Species.py to Species.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/design/design_algorithms.py to design_algorithms.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/json.py to json.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/mat.py to mat.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml.py to sbml.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml3.py to sbml3.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/delete.py to delete.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/modify.py to modify.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/validate.py to validate.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/coin.py to coin.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/esolver.py to esolver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/mosek.py to mosek.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/parameters.py to parameters.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/design.py to design.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/manipulation.py to manipulation.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/solvers.py to solvers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/io_tests.py to io_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-34.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra-0.4.0b6.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/«PKGBUILDDIR»'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installdocs -Xexample
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-35m-arm-linux-gnueabihf.so were not linked against libpthread.so.0 (they use none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra-dbgsym' in '../python-cobra-dbgsym_0.4.0b6-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra-dbgsym' in '../python3-cobra-dbgsym_0.4.0b6-1_armhf.deb'.
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.4.0b6-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.4.0b6-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.4.0b6-1_armhf.changes
dpkg-genchanges: warning: package python-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package python3-cobra-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.4.0b6
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151227-0607

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


python-cobra_0.4.0b6-1_armhf.changes:
─────────────────────────────────────

Format: 1.8
Date: Mon, 21 Dec 2015 21:29:51 -0800
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.4.0b6-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.4.0b6-1) unstable; urgency=medium
 .
   * Run autopkgtests from outside the source tree
   * Imported Upstream version 0.4.0b6
Checksums-Sha1:
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 9060b518503f29a524471e2d81110e28b94ab008 137910 python-cobra_0.4.0b6-1_armhf.deb
 577913c0c73e923e1912f95892a900bc8d76108d 307294 python3-cobra-dbgsym_0.4.0b6-1_armhf.deb
 27354bd963f1b758cdb1e691da3dd15b6e9d4b2c 146666 python3-cobra_0.4.0b6-1_armhf.deb
Checksums-Sha256:
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 8adf3d0f5b441cfa5a19b6b6fa5dc331dbfc66070f9124483955fb1df091c9a0 307294 python3-cobra-dbgsym_0.4.0b6-1_armhf.deb
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Files:
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 010291862f29e845e29819f1eac183ca 146666 python optional python3-cobra_0.4.0b6-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


python-cobra-dbgsym_0.4.0b6-1_armhf.deb
───────────────────────────────────────

 new debian package, version 2.0.
 size 137460 bytes: control archive=495 bytes.
     437 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python-cobra-dbgsym
 Source: python-cobra
 Version: 0.4.0b6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 169
 Depends: python-cobra (= 0.4.0b6-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: e5c3c437103416d5695e800f68603cd6b6d33b8e

drwxr-xr-x root/root         0 2015-12-27 06:07 ./
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/debug/
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/debug/.build-id/e5/
-rw-r--r-- root/root    162068 2015-12-27 06:07 ./usr/lib/debug/.build-id/e5/c3c437103416d5695e800f68603cd6b6d33b8e.debug
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/share/
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/share/doc/
lrwxrwxrwx root/root         0 2015-12-27 06:07 ./usr/share/doc/python-cobra-dbgsym -> python-cobra


python-cobra_0.4.0b6-1_armhf.deb
────────────────────────────────

 new debian package, version 2.0.
 size 137910 bytes: control archive=3105 bytes.
    1067 bytes,    21 lines      control              
    6245 bytes,    67 lines      md5sums              
     160 bytes,     9 lines   *  postinst             #!/bin/sh
     259 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Version: 0.4.0b6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 674
 Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~), python-cobra-data (= 0.4.0b6-1)
 Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
 Suggests: python-matplotlib
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

drwxr-xr-x root/root         0 2015-12-27 06:07 ./
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/
drwxr-xr-x root/root         0 2015-12-27 06:05 ./usr/lib/
drwxr-xr-x root/root         0 2015-12-27 06:05 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2015-12-27 06:05 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2015-12-27 06:05 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/
-rw-r--r-- root/root      4090 2015-12-27 06:05 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2015-12-27 06:05 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/dependency_links.txt
-rw-r--r-- root/root       226 2015-12-27 06:07 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/requires.txt
-rw-r--r-- root/root         6 2015-12-27 06:05 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/top_level.txt
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/python2.7/dist-packages/cobra/
-rw-r--r-- root/root         8 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/VERSION
-rw-r--r-- root/root       927 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/python2.7/dist-packages/cobra/core/
-rw-r--r-- root/root     16587 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root     12216 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root      5315 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root      6944 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      7626 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     14442 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root       678 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     24420 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root      1231 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root      1241 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root       442 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/python2.7/dist-packages/cobra/design/
-rw-r--r-- root/root        33 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/design/__init__.py
-rw-r--r-- root/root     16273 2015-12-21 21:06 ./usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
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-rw-r--r-- root/root      2005 2015-08-16 06:28 ./usr/share/doc/python-cobra/copyright


python3-cobra-dbgsym_0.4.0b6-1_armhf.deb
────────────────────────────────────────

 new debian package, version 2.0.
 size 307294 bytes: control archive=558 bytes.
     481 bytes,    13 lines      control              
     212 bytes,     2 lines      md5sums              
 Package: python3-cobra-dbgsym
 Source: python-cobra
 Version: 0.4.0b6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 369
 Depends: python3-cobra (= 0.4.0b6-1)
 Section: debug
 Priority: extra
 Homepage: http://opencobra.github.io/cobrapy/
 Description: Debug symbols for python3-cobra
 Auto-Built-Package: debug-symbols
 Build-Ids: 8992301bd470a7aca605764739d65d91d9833a27 cb65ab9a9a263614b2baf086635c49a8c6257196

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lrwxrwxrwx root/root         0 2015-12-27 06:07 ./usr/share/doc/python3-cobra-dbgsym -> python3-cobra


python3-cobra_0.4.0b6-1_armhf.deb
─────────────────────────────────

 new debian package, version 2.0.
 size 146666 bytes: control archive=3133 bytes.
    1053 bytes,    22 lines      control              
    5984 bytes,    65 lines      md5sums              
     170 bytes,     9 lines   *  postinst             #!/bin/sh
     399 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.4.0b6-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 765
 Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python3 (<< 3.6), python3 (>= 3.4~), python3-six, python-cobra-data (= 0.4.0b6-1)
 Recommends: python3-numpy, python3-scipy, python3-pandas
 Suggests: python3-matplotlib
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

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-rw-r--r-- root/root      7047 2015-12-21 21:06 ./usr/lib/python3/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      4432 2015-12-21 21:06 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2015-12-27 06:07 ./usr/lib/python3/dist-packages/cobra/io/
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
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│ Cleanup                                                                      │
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Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 53352
Build-Time: 800
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 588
Job: python-cobra_0.4.0b6-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1435
Source-Version: 0.4.0b6-1
Space: 53352
Status: successful
Version: 0.4.0b6-1
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Finished at 20151227-0607
Build needed 00:23:55, 53352k disc space