python-cobra →
0.4.0b2-1 →
armhf → 2015-08-16 04:43:22
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ python-cobra 0.4.0b2-1 (armhf) 16 Aug 2015 04:24 ║
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Package: python-cobra
Version: 0.4.0b2-1
Source Version: 0.4.0b2-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/python-cobra-FTuwsG/python-cobra-0.4.0b2' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-cobra-FTuwsG' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-7ac3105c-0efb-4fa1-9eb3-5569e2e4f738' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8235 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.1 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
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Check APT
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NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-cobra.git
Need to get 2239 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b2-1 (dsc) [2283 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b2-1 (tar) [2232 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b2-1 (diff) [5016 B]
Fetched 2239 kB in 1s (1738 kB/s)
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-vlzlkl/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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Get:1 file: ./ Release.gpg [299 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 28 not upgraded.
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(Reading database ... 11966 files and directories currently installed.)
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, libglpk-dev
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/«BUILDDIR»/resolver-zrR0xZ/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
OK
Ign file: ./ InRelease
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Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-cobra build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cython cython3 debhelper dh-python file gettext gettext-base
groff-base intltool-debian libamd2.3.1 libasprintf0c2 libblas-common
libblas-dev libblas3 libbtf1.2.0 libcamd2.3.1 libccolamd2.8.0
libcholmod2.1.2 libcolamd2.8.0 libcroco3 libcsparse3.1.2 libcxsparse3.1.2
libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0 libglpk-dev
libglpk36 libgmp-dev libgmpxx4ldbl libklu1.2.1 liblapack-dev liblapack3
libldl2.1.0 libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal
libpython3.4-stdlib libspqr1.3.1 libsqlite3-0 libssl1.0.0 libsuitesparse-dev
libumfpack5.6.2 libunistring0 libxml2 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
python3 python3-all python3-all-dev python3-dev python3-minimal
python3-pkg-resources python3-setuptools python3-six python3.4 python3.4-dev
python3.4-minimal zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation cython-doc dh-make gettext-doc groff
libiodbc2-dev libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev less
www-browser libmail-box-perl python-doc python-tk python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3.4-venv
python3.4-doc
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xdg-user-dirs xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cython cython3 debhelper dh-python file gettext gettext-base
groff-base intltool-debian libamd2.3.1 libasprintf0c2 libblas-common
libblas-dev libblas3 libbtf1.2.0 libcamd2.3.1 libccolamd2.8.0
libcholmod2.1.2 libcolamd2.8.0 libcroco3 libcsparse3.1.2 libcxsparse3.1.2
libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0 libglpk-dev
libglpk36 libgmp-dev libgmpxx4ldbl libklu1.2.1 liblapack-dev liblapack3
libldl2.1.0 libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal
libpython3.4-stdlib libspqr1.3.1 libsqlite3-0 libssl1.0.0 libsuitesparse-dev
libumfpack5.6.2 libunistring0 libxml2 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
python3 python3-all python3-all-dev python3-dev python3-minimal
python3-pkg-resources python3-setuptools python3-six python3.4 python3.4-dev
python3.4-minimal sbuild-build-depends-python-cobra-dummy zlib1g-dev
0 upgraded, 88 newly installed, 0 to remove and 28 not upgraded.
Need to get 70.6 MB/70.6 MB of archives.
After this operation, 164 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.4-1 [31.5 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-3 [380 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-3 [1815 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libpython2.7 armhf 2.7.10-3 [932 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-3 [1163 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-3 [259 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libamd2.3.1 armhf 1:4.2.1-3 [22.6 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libbtf1.2.0 armhf 1:4.2.1-3 [12.1 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libcamd2.3.1 armhf 1:4.2.1-3 [20.4 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libccolamd2.8.0 armhf 1:4.2.1-3 [21.5 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.1.1-14+rpi1 [154 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:27 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libcolamd2.8.0 armhf 1:4.2.1-3 [17.8 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libcholmod2.1.2 armhf 1:4.2.1-3 [364 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libcsparse3.1.2 armhf 1:4.2.1-3 [30.1 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libcxsparse3.1.2 armhf 1:4.2.1-3 [48.8 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libglpk36 armhf 4.55-1 [354 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libklu1.2.1 armhf 1:4.2.1-3 [81.5 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libldl2.1.0 armhf 1:4.2.1-3 [12.0 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libpython2.7-dev armhf 2.7.10-3 [18.0 MB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libpython3.4-minimal armhf 3.4.3-7 [487 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libpython3.4-stdlib armhf 3.4.3-7 [1983 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libpython3.4 armhf 3.4.3-7 [1122 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libpython3.4-dev armhf 3.4.3-7 [21.8 MB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libspqr1.3.1 armhf 1:4.2.1-3 [73.6 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libumfpack5.6.2 armhf 1:4.2.1-3 [314 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main python3.4-minimal armhf 3.4.3-7 [1142 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main python3-minimal armhf 3.4.3-4 [34.8 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main python3.4 armhf 3.4.3-7 [219 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libpython3-stdlib armhf 3.4.3-4 [18.2 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main dh-python all 2.20150728 [71.3 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main python3 armhf 3.4.3-4 [21.3 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.4-1 [117 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main cython armhf 0.22.1-2 [1435 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main cython3 armhf 0.22.1-2 [1437 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.4-1 [1168 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150628 [817 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libgmpxx4ldbl armhf 2:6.0.0+dfsg-7+rpi1 [21.6 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libgmp-dev armhf 2:6.0.0+dfsg-7+rpi1 [553 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libsuitesparse-dev armhf 1:4.2.1-3 [1259 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libglpk-dev armhf 4.55-1 [386 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libpython-dev armhf 2.7.9-1 [19.6 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libpython-all-dev armhf 2.7.9-1 [1012 B]
Get:72 http://172.17.0.1/private/ stretch-staging/main libpython3-dev armhf 3.4.3-4 [18.3 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libpython3-all-dev armhf 3.4.3-4 [1010 B]
Get:74 http://172.17.0.1/private/ stretch-staging/main python-all armhf 2.7.9-1 [994 B]
Get:75 http://172.17.0.1/private/ stretch-staging/main python2.7-dev armhf 2.7.10-3 [279 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main python-dev armhf 2.7.9-1 [1188 B]
Get:77 http://172.17.0.1/private/ stretch-staging/main python-all-dev armhf 2.7.9-1 [1024 B]
Get:78 http://172.17.0.1/private/ stretch-staging/main python-pkg-resources all 18.0.1-2 [73.6 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main python-setuptools all 18.0.1-2 [180 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main python-six all 1.9.0-3 [13.6 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main python3-all armhf 3.4.3-4 [984 B]
Get:82 http://172.17.0.1/private/ stretch-staging/main python3.4-dev armhf 3.4.3-7 [418 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main python3-dev armhf 3.4.3-4 [1208 B]
Get:84 http://172.17.0.1/private/ stretch-staging/main python3-all-dev armhf 3.4.3-4 [1010 B]
Get:85 http://172.17.0.1/private/ stretch-staging/main python3-pkg-resources all 18.0.1-2 [44.2 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main python3-setuptools all 18.0.1-2 [92.6 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main python3-six all 1.9.0-3 [13.7 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-10 dpkg-dev_1.18.1 g++-4.9_4.9.3-2 gcc-4.9_4.9.3-2 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-2 libstdc++6_5.1.1-14+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.10 base-files_9.2+rpi1 base-passwd_3.5.38 bash_4.3-12 binutils_2.25-10 bsdmainutils_9.0.6 bsdutils_1:2.26.2-6 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-4+rpi1 cpp-4.9_4.9.3-2 cython_0.22.1-2 cython3_0.22.1-2 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150628 debianutils_4.5.1 dh-python_2.20150728 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.18.1 dpkg-dev_1.18.1 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:4.9.2-4+rpi1 g++-4.9_4.9.3-2 gcc_4:4.9.2-4+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-2 gcc-4.9-base_4.9.3-2 gcc-5-base_5.1.1-14+rpi1 gettext_0.19.4-1 gettext-base_0.19.4-1 gnupg_1.4.19-3 gpgv_1.4.19-3 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 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libffi6_3.2.1-3 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-2 libgcc1_1:5.1.1-14+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.1.1-14+rpi1 libglib2.0-0_2.44.1-1.1 libglpk-dev_4.55-1 libglpk36_4.55-1 libgmp-dev_2:6.0.0+dfsg-7+rpi1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgmpxx4ldbl_2:6.0.0+dfsg-7+rpi1 libgomp1_5.1.1-14+rpi1 libgpg-error0_1.19-2 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libklu1.2.1_1:4.2.1-3 libkmod2_21-1 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldl2.1.0_1:4.2.1-3 liblocale-gettext-perl_1.05-9 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.22+15-2 libmount1_2.26.2-6 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2 libncursesw5_5.9+20150516-2 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-3 libpython2.7-dev_2.7.10-3 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libpython3-all-dev_3.4.3-4 libpython3-dev_3.4.3-4 libpython3-stdlib_3.4.3-4 libpython3.4_3.4.3-7 libpython3.4-dev_3.4.3-7 libpython3.4-minimal_3.4.3-7 libpython3.4-stdlib_3.4.3-7 libreadline6_6.3-8 libseccomp2_2.2.1-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.26.2-6 libspqr1.3.1_1:4.2.1-3 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-2 libstdc++6_5.1.1-14+rpi1 libsuitesparse-dev_1:4.2.1-3 libsystemd0_222-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2 libubsan0_5.1.1-14+rpi1 libudev1_222-2 libumfpack5.6.2_1:4.2.1-3 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.59 mount_2.26.2-6 mountall_2.54 multiarch-support_2.19-19 ncurses-base_5.9+20150516-2 ncurses-bin_5.9+20150516-2 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-dev_2.7.9-1 python-minimal_2.7.9-1 python-pkg-resources_18.0.1-2 python-setuptools_18.0.1-2 python-six_1.9.0-3 python2.7_2.7.10-3 python2.7-dev_2.7.10-3 python2.7-minimal_2.7.10-3 python3_3.4.3-4 python3-all_3.4.3-4 python3-all-dev_3.4.3-4 python3-dev_3.4.3-4 python3-minimal_3.4.3-4 python3-pkg-resources_18.0.1-2 python3-setuptools_18.0.1-2 python3-six_1.9.0-3 python3.4_3.4.3-7 python3.4-dev_3.4.3-7 python3.4-minimal_3.4.3-7 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_222-2 systemd-sysv_222-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.27.1-2 tzdata_2015e-1 udev_222-2 util-linux_2.26.2-6 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Aug 10 12:32:17 2015 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.0b2-1.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.0b2
dpkg-source: info: unpacking python-cobra_0.4.0b2.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.0b2-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying test-suite-return-code.patch
dpkg-source: info: applying testsuite-check-jsonschema.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-7ac3105c-0efb-4fa1-9eb3-5569e2e4f738
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package python-cobra
dpkg-buildpackage: source version 0.4.0b2-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build python-cobra-0.4.0b2
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean
I: pybuild base:170: python2.7 setup.py clean
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:170: python3.4 setup.py clean
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.4' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2,python3 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py config
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:170: python3.4 setup.py config
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py build
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/test_all.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:170: /usr/bin/python3 setup.py build
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/test_all.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/cobra
creating build/temp.linux-armv7l-3.4/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py test
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.so
cobra/core/__init__.py:19 [1;31mUserWarning[0m: ArrayBasedModel requires scipy
cobra/io/__init__.py:16 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
cobra/io/__init__.py:22 [1;31mUserWarning[0m: cobra.io.mat requires scipy
cobra/io/sbml3.py:21 [1;31mUserWarning[0m: Install lxml for faster SBML I/O
cobra/flux_analysis/essentiality.py:5 [1;31mUserWarning[0m: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 [1;31mUserWarning[0m: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_escape_ids (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gene_knockout_computation (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_modify_reversible (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_remove_genes (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
----------------------------------------------------------------------
Ran 98 tests in 31.663s
OK (skipped=28)
I: pybuild base:170: python3.4 setup.py test
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.cpython-34m.so
cobra/core/__init__.py:19 [1;31mUserWarning[0m: ArrayBasedModel requires scipy
cobra/io/__init__.py:16 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
cobra/io/__init__.py:22 [1;31mUserWarning[0m: cobra.io.mat requires scipy
cobra/io/sbml3.py:21 [1;31mUserWarning[0m: Install lxml for faster SBML I/O
cobra/flux_analysis/essentiality.py:5 [1;31mUserWarning[0m: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 [1;31mUserWarning[0m: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_escape_ids (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gene_knockout_computation (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_modify_reversible (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_remove_genes (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Bz2) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_write (cobra.test.io_tests.TestCobraIOSBMLfbc2Gz) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_write (cobra.test.io_tests.TestCobraIOjson) ... skipped 'jsonschema required'
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
----------------------------------------------------------------------
Ran 98 tests in 33.614s
OK (skipped=31)
fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2,python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py install --root /«PKGBUILDDIR»/debian/python-cobra
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test_all.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test_all.py to test_all.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info
running install_scripts
I: pybuild base:170: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/python3-cobra
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
running install_lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test_all.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
renaming extension cglpk.cpython-34m.so -> cglpk.cpython-34m-arm-linux-gnueabihf.so
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.bz2 -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook.xml.gz -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook_fva.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test_all.py to test_all.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/version.py to version.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/DictList.py to DictList.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Formula.py to Formula.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Gene.py to Gene.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Model.py to Model.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Object.py to Object.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Reaction.py to Reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Solution.py to Solution.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Species.py to Species.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/json.py to json.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/mat.py to mat.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml.py to sbml.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml3.py to sbml3.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/delete.py to delete.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/modify.py to modify.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/coin.py to coin.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/esolver.py to esolver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/mosek.py to mosek.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/parameters.py to parameters.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/solvers.py to solvers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/io_tests.py to io_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-34.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing top-level names to cobra.egg-info/top_level.txt
writing cobra.egg-info/PKG-INFO
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra-0.4.0b2.egg-info
running install_scripts
File "/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py", line 318
print '%s failed: %s'%(solver_name, status)
^
SyntaxError: invalid syntax
File "/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py", line 86
except Exception, e1:
^
SyntaxError: invalid syntax
File "/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py", line 73
except Exception, e:
^
SyntaxError: invalid syntax
debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_installdocs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installdocs -Xexample
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:316: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
dh_python3 -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-cobra' in '../python-cobra_0.4.0b2-1_armhf.deb'.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.4.0b2-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.4.0b2-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build python-cobra-0.4.0b2
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150816-0443
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
python-cobra_0.4.0b2-1_armhf.changes:
─────────────────────────────────────
Format: 1.8
Date: Tue, 04 Aug 2015 18:52:51 -0700
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.4.0b2-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
python-cobra - constraint-based modeling of biological networks (Python 2)
python-cobra-data - constraint-based modeling of biological networks (data)
python3-cobra - constraint-based modeling of biological networks (Python 3)
Closes: 794978
Changes:
python-cobra (0.4.0b2-1) unstable; urgency=medium
.
* Adjust package relationships as requested by upstream
* Imported Upstream version 0.4.0b2 (Closes: 794978)
* Require matching version of the data package
* Configured autopkgtests
* Allowed tests to run without python-jsonschema
* Added lintian overrides for python-cobra-data
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
python-cobra_0.4.0b2-1_armhf.deb
────────────────────────────────
new debian package, version 2.0.
size 134520 bytes: control archive=2948 bytes.
1067 bytes, 21 lines control
5764 bytes, 62 lines md5sums
160 bytes, 9 lines * postinst #!/bin/sh
259 bytes, 14 lines * prerm #!/bin/sh
Package: python-cobra
Version: 0.4.0b2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 642
Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~), python-cobra-data (= 0.4.0b2-1)
Recommends: python-numpy, python-scipy, libsbml5-python, python-pandas
Suggests: python-matplotlib
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks (Python 2)
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
.
This package provides the Python 2 module.
drwxr-xr-x root/root 0 2015-08-16 04:42 ./
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drwxr-xr-x root/root 0 2015-08-16 04:41 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2015-08-16 04:41 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info/
-rw-r--r-- root/root 3465 2015-08-16 04:41 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2015-08-16 04:41 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info/dependency_links.txt
-rw-r--r-- root/root 256 2015-08-16 04:41 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info/requires.txt
-rw-r--r-- root/root 6 2015-08-16 04:41 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b2.egg-info/top_level.txt
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/
-rw-r--r-- root/root 8 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/VERSION
-rw-r--r-- root/root 919 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/core/
-rw-r--r-- root/root 16587 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root 12123 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root 5315 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root 6944 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root 7628 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root 14401 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root 680 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root 24290 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root 1231 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root 1241 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root 442 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 673 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 5948 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root 23264 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root 3063 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root 7068 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 2523 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 4379 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 2676 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 12220 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 7089 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 7047 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root 4432 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/io/
-rw-r--r-- root/root 617 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 9791 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 7629 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 29654 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 27335 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 184 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 8601 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 9166 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/solvers/
-rw-r--r-- root/root 3964 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root 150144 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so
-rw-r--r-- root/root 4214 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root 13233 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root 11819 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
-rw-r--r-- root/root 6286 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root 9552 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root 14112 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
-rw-r--r-- root/root 9386 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root 10539 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
-rw-r--r-- root/root 8435 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root 7741 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root 1114 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/test/
-rw-r--r-- root/root 1932 2015-08-16 04:33 ./usr/lib/python2.7/dist-packages/cobra/test/__init__.py
lrwxrwxrwx root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root 17608 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py
-rw-r--r-- root/root 8169 2015-08-16 04:33 ./usr/lib/python2.7/dist-packages/cobra/test/io_tests.py
-rw-r--r-- root/root 12331 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/test/solvers.py
-rw-r--r-- root/root 29065 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py
-rw-r--r-- root/root 207 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/test_all.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python2.7/dist-packages/cobra/topology/
-rw-r--r-- root/root 248 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root 6653 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root 4585 2015-08-05 01:52 ./usr/lib/python2.7/dist-packages/cobra/version.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/share/
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/share/doc/python-cobra/
-rw-r--r-- root/root 1887 2015-08-05 01:52 ./usr/share/doc/python-cobra/README.md
-rw-r--r-- root/root 816 2015-08-10 12:19 ./usr/share/doc/python-cobra/changelog.Debian.gz
-rw-r--r-- root/root 2005 2015-08-10 12:18 ./usr/share/doc/python-cobra/copyright
python3-cobra_0.4.0b2-1_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 129286 bytes: control archive=2925 bytes.
1053 bytes, 22 lines control
5292 bytes, 58 lines md5sums
170 bytes, 9 lines * postinst #!/bin/sh
399 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.4.0b2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 599
Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python3 (<< 3.5), python3 (>= 3.4~), python3-six, python-cobra-data (= 0.4.0b2-1)
Recommends: python3-numpy, python3-scipy, python3-pandas
Suggests: python3-matplotlib
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks (Python 3)
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
.
This package provides the Python 3 module.
drwxr-xr-x root/root 0 2015-08-16 04:42 ./
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/
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drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python3/dist-packages/
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-rw-r--r-- root/root 919 2015-08-05 01:52 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2015-08-16 04:42 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root 16587 2015-08-05 01:52 ./usr/lib/python3/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root 12123 2015-08-05 01:52 ./usr/lib/python3/dist-packages/cobra/core/DictList.py
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-rw-r--r-- root/root 6944 2015-08-05 01:52 ./usr/lib/python3/dist-packages/cobra/core/Gene.py
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-rw-r--r-- root/root 14401 2015-08-05 01:52 ./usr/lib/python3/dist-packages/cobra/core/Model.py
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
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Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
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Build Architecture: armhf
Build-Space: 39580
Build-Time: 612
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 427
Job: python-cobra_0.4.0b2-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1101
Source-Version: 0.4.0b2-1
Space: 39580
Status: successful
Version: 0.4.0b2-1
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Finished at 20150816-0443
Build needed 00:18:21, 39580k disc space