Build log for python-cobra (0.4.0b1-2) on armhf

python-cobra → 0.4.0b1-2 → armhf → 2015-07-16 08:48:23

sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ python-cobra 0.4.0b1-2 (armhf)                             16 Jul 2015 08:28 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: python-cobra
Version: 0.4.0b1-2
Source Version: 0.4.0b1-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-cobra-EnUCbu/python-cobra-0.4.0b1' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-cobra-EnUCbu' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e901c7b0-530e-485c-aa97-08bc2b8cde25' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8099 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9965 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.1 MB in 34s (520 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-cobra.git
Need to get 2445 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b1-2 (dsc) [2276 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b1-2 (tar) [2439 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main python-cobra 0.4.0b1-2 (diff) [4008 B]
Fetched 2445 kB in 0s (3473 kB/s)
Download complete and in download only mode

Check architectures
───────────────────


Check dependencies
──────────────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-1F_QUI/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 82 not upgraded.
Need to get 0 B/814 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python3-sphinx, libglpk-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all, python-all-dev, python-setuptools, python-six, cython, python3-all, python3-all-dev, python3-setuptools, python3-six, cython3, python3-sphinx, libglpk-dev
dpkg-deb: building package `sbuild-build-depends-python-cobra-dummy' in `/«BUILDDIR»/resolver-u8fRnq/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-cobra build dependencies (apt-based resolver)                 │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils cython cython3 debhelper dh-python docutils-common file
  gcc-5-base gettext gettext-base groff-base intltool-debian libamd2.3.1
  libasprintf0c2 libblas-common libblas-dev libblas3 libbtf1.2.0 libcamd2.3.1
  libccolamd2.8.0 libcholmod2.1.2 libcolamd2.8.0 libcroco3 libcsparse3.1.2
  libcxsparse3.1.2 libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0
  libglpk-dev libglpk36 libgmp-dev libgmp10 libgmpxx4ldbl libjs-jquery
  libjs-sphinxdoc libjs-underscore libklu1.2.1 liblapack-dev liblapack3
  libldl2.1.0 libltdl7 libmagic1 libmpdec2 libpipeline1 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal
  libpython3.4-stdlib libspqr1.3.1 libsqlite3-0 libssl1.0.0 libsuitesparse-dev
  libumfpack5.6.2 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-dev python-minimal python-pkg-resources
  python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
  python3 python3-all python3-all-dev python3-dev python3-docutils
  python3-jinja2 python3-markupsafe python3-minimal python3-pkg-resources
  python3-pygments python3-roman python3-setuptools python3-six python3-sphinx
  python3.4 python3.4-dev python3.4-minimal sgml-base sphinx-common xml-core
  zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff libiodbc2-dev
  libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev less www-browser
  libmail-box-perl python-doc python-tk python2.7-doc binfmt-support
  python3-doc python3-tk python3-venv texlive-latex-recommended
  texlive-latex-base texlive-lang-french fonts-linuxlibertine
  ttf-linux-libertine docutils-doc python-jinja2-doc ttf-bitstream-vera
  libjs-mathjax dvipng texlive-latex-extra texlive-fonts-recommended
  sphinx-doc python3.4-venv python3.4-doc sgml-base-doc
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info xdg-user-dirs javascript-common
  libmail-sendmail-perl python3-pil libpaper-utils
The following NEW packages will be installed:
  bsdmainutils cython cython3 debhelper dh-python docutils-common file
  gcc-5-base gettext gettext-base groff-base intltool-debian libamd2.3.1
  libasprintf0c2 libblas-common libblas-dev libblas3 libbtf1.2.0 libcamd2.3.1
  libccolamd2.8.0 libcholmod2.1.2 libcolamd2.8.0 libcroco3 libcsparse3.1.2
  libcxsparse3.1.2 libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0
  libglpk-dev libglpk36 libgmp-dev libgmpxx4ldbl libjs-jquery libjs-sphinxdoc
  libjs-underscore libklu1.2.1 liblapack-dev liblapack3 libldl2.1.0 libltdl7
  libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib
  libspqr1.3.1 libsqlite3-0 libssl1.0.0 libsuitesparse-dev libumfpack5.6.2
  libunistring0 libxml2 man-db mime-support po-debconf python python-all
  python-all-dev python-dev python-minimal python-pkg-resources
  python-setuptools python-six python2.7 python2.7-dev python2.7-minimal
  python3 python3-all python3-all-dev python3-dev python3-docutils
  python3-jinja2 python3-markupsafe python3-minimal python3-pkg-resources
  python3-pygments python3-roman python3-setuptools python3-six python3-sphinx
  python3.4 python3.4-dev python3.4-minimal
  sbuild-build-depends-python-cobra-dummy sgml-base sphinx-common xml-core
  zlib1g-dev
The following packages will be upgraded:
  libgmp10
1 upgraded, 102 newly installed, 0 to remove and 81 not upgraded.
Need to get 73.1 MB/73.1 MB of archives.
After this operation, 173 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.4-1 [31.5 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-3 [380 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.58 [36.0 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.10.2-1 [389 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-3 [1815 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libpython2.7 armhf 2.7.10-3 [932 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-3 [1163 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-3 [259 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libamd2.3.1 armhf 1:4.2.1-3 [22.6 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libbtf1.2.0 armhf 1:4.2.1-3 [12.1 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libcamd2.3.1 armhf 1:4.2.1-3 [20.4 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libccolamd2.8.0 armhf 1:4.2.1-3 [21.5 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.1.1-12+rpi1 [165 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.1.1-12+rpi1 [154 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:28 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libcolamd2.8.0 armhf 1:4.2.1-3 [17.8 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libcholmod2.1.2 armhf 1:4.2.1-3 [364 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libcsparse3.1.2 armhf 1:4.2.1-3 [30.1 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libcxsparse3.1.2 armhf 1:4.2.1-3 [48.8 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libgmp10 armhf 2:6.0.0+dfsg-7+rpi1 [188 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libglpk36 armhf 4.55-1 [354 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libklu1.2.1 armhf 1:4.2.1-3 [81.5 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libldl2.1.0 armhf 1:4.2.1-3 [12.0 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libexpat1-dev armhf 2.1.0-6 [117 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libpython2.7-dev armhf 2.7.10-3 [18.0 MB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libpython3.4-minimal armhf 3.4.3-7 [487 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libpython3.4-stdlib armhf 3.4.3-7 [1983 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libpython3.4 armhf 3.4.3-7 [1122 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libpython3.4-dev armhf 3.4.3-7 [21.8 MB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libspqr1.3.1 armhf 1:4.2.1-3 [73.6 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libumfpack5.6.2 armhf 1:4.2.1-3 [314 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main python3.4-minimal armhf 3.4.3-7 [1142 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main python3-minimal armhf 3.4.3-4 [34.8 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main python3.4 armhf 3.4.3-7 [219 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libpython3-stdlib armhf 3.4.3-4 [18.2 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main dh-python all 1.20150705-1 [66.7 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main python3 armhf 3.4.3-4 [21.3 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main sgml-base all 1.26+nmu4 [14.6 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.4-1 [117 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main cython armhf 0.21.1-1 [1421 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main cython3 armhf 0.21.1-1 [1423 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.4-1 [1168 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150628 [817 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main xml-core all 0.13+nmu2 [24.2 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main docutils-common all 0.12+dfsg-1 [185 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libgmpxx4ldbl armhf 2:6.0.0+dfsg-7+rpi1 [21.6 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libgmp-dev armhf 2:6.0.0+dfsg-7+rpi1 [553 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libsuitesparse-dev armhf 1:4.2.1-3 [1259 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libglpk-dev armhf 4.55-1 [386 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libjs-sphinxdoc all 1.2.3+dfsg-1 [41.1 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main libpython-dev armhf 2.7.9-1 [19.6 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main libpython-all-dev armhf 2.7.9-1 [1012 B]
Get:80 http://172.17.0.1/private/ stretch-staging/main libpython3-dev armhf 3.4.3-4 [18.3 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libpython3-all-dev armhf 3.4.3-4 [1010 B]
Get:82 http://172.17.0.1/private/ stretch-staging/main python-all armhf 2.7.9-1 [994 B]
Get:83 http://172.17.0.1/private/ stretch-staging/main python2.7-dev armhf 2.7.10-3 [279 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main python-dev armhf 2.7.9-1 [1188 B]
Get:85 http://172.17.0.1/private/ stretch-staging/main python-all-dev armhf 2.7.9-1 [1024 B]
Get:86 http://172.17.0.1/private/ stretch-staging/main python-pkg-resources all 17.0-1 [73.2 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main python-setuptools all 17.0-1 [206 kB]
Get:88 http://172.17.0.1/private/ stretch-staging/main python-six all 1.9.0-3 [13.6 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main python3-all armhf 3.4.3-4 [984 B]
Get:90 http://172.17.0.1/private/ stretch-staging/main python3.4-dev armhf 3.4.3-7 [418 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main python3-dev armhf 3.4.3-4 [1208 B]
Get:92 http://172.17.0.1/private/ stretch-staging/main python3-all-dev armhf 3.4.3-4 [1010 B]
Get:93 http://172.17.0.1/private/ stretch-staging/main python3-roman all 2.0.0-1 [7948 B]
Get:94 http://172.17.0.1/private/ stretch-staging/main python3-docutils all 0.12+dfsg-1 [360 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main python3-markupsafe armhf 0.23-2 [15.9 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main python3-jinja2 all 2.7.3-1 [168 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main python3-pkg-resources all 17.0-1 [43.7 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main python3-pygments all 2.0.1+dfsg-1.1 [479 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main python3-setuptools all 17.0-1 [92.9 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main python3-six all 1.9.0-3 [13.7 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main sphinx-common all 1.2.3+dfsg-1 [407 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main python3-sphinx all 1.2.3+dfsg-1 [271 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 73.1 MB in 18s (3959 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.4.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.0-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.0.2-5_armhf.deb ...
Unpacking man-db (2.7.0.2-5) ...
Selecting previously unselected package libasprintf0c2:armhf.
Preparing to unpack .../libasprintf0c2_0.19.4-1_armhf.deb ...
Unpacking libasprintf0c2:armhf (0.19.4-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.22+15-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.22+15-2) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.10-3_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.10-3) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.58_all.deb ...
Unpacking mime-support (3.58) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-6_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-6) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.1-2_armhf.deb ...
Unpacking libffi6:armhf (3.1-2) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.10.2-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.10.2-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.2d-1_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.2d-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.10-3_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.10-3) ...
Selecting previously unselected package libpython2.7:armhf.
Preparing to unpack .../libpython2.7_2.7.10-3_armhf.deb ...
Unpacking libpython2.7:armhf (2.7.10-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.10-3_armhf.deb ...
Unpacking python2.7-minimal (2.7.10-3) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.9-1_armhf.deb ...
Unpacking python-minimal (2.7.9-1) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.10-3_armhf.deb ...
Unpacking python2.7 (2.7.10-3) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.9-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.9-1) ...
Setting up libpython2.7-minimal:armhf (2.7.10-3) ...
Setting up python2.7-minimal (2.7.10-3) ...
Setting up python-minimal (2.7.9-1) ...
Selecting previously unselected package python.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13404 files and directories currently installed.)
Preparing to unpack .../python_2.7.9-1_armhf.deb ...
Unpacking python (2.7.9-1) ...
Selecting previously unselected package libamd2.3.1:armhf.
Preparing to unpack .../libamd2.3.1_1%3a4.2.1-3_armhf.deb ...
Unpacking libamd2.3.1:armhf (1:4.2.1-3) ...
Selecting previously unselected package libbtf1.2.0:armhf.
Preparing to unpack .../libbtf1.2.0_1%3a4.2.1-3_armhf.deb ...
Unpacking libbtf1.2.0:armhf (1:4.2.1-3) ...
Selecting previously unselected package libcamd2.3.1:armhf.
Preparing to unpack .../libcamd2.3.1_1%3a4.2.1-3_armhf.deb ...
Unpacking libcamd2.3.1:armhf (1:4.2.1-3) ...
Selecting previously unselected package libccolamd2.8.0:armhf.
Preparing to unpack .../libccolamd2.8.0_1%3a4.2.1-3_armhf.deb ...
Unpacking libccolamd2.8.0:armhf (1:4.2.1-3) ...
Selecting previously unselected package gcc-5-base:armhf.
Preparing to unpack .../gcc-5-base_5.1.1-12+rpi1_armhf.deb ...
Unpacking gcc-5-base:armhf (5.1.1-12+rpi1) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_5.1.1-12+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (5.1.1-12+rpi1) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_1.2.20110419-10_armhf.deb ...
Unpacking libblas-common (1.2.20110419-10) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_1.2.20110419-10_armhf.deb ...
Unpacking libblas3 (1.2.20110419-10) ...
Selecting previously unselected package libcolamd2.8.0:armhf.
Preparing to unpack .../libcolamd2.8.0_1%3a4.2.1-3_armhf.deb ...
Unpacking libcolamd2.8.0:armhf (1:4.2.1-3) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.5.0-4_armhf.deb ...
Unpacking liblapack3 (3.5.0-4) ...
Selecting previously unselected package libcholmod2.1.2:armhf.
Preparing to unpack .../libcholmod2.1.2_1%3a4.2.1-3_armhf.deb ...
Unpacking libcholmod2.1.2:armhf (1:4.2.1-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.44.1-1.1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.44.1-1.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libcsparse3.1.2:armhf.
Preparing to unpack .../libcsparse3.1.2_1%3a4.2.1-3_armhf.deb ...
Unpacking libcsparse3.1.2:armhf (1:4.2.1-3) ...
Selecting previously unselected package libcxsparse3.1.2:armhf.
Preparing to unpack .../libcxsparse3.1.2_1%3a4.2.1-3_armhf.deb ...
Unpacking libcxsparse3.1.2:armhf (1:4.2.1-3) ...
Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-7+rpi1_armhf.deb ...
Unpacking libgmp10:armhf (2:6.0.0+dfsg-7+rpi1) over (2:6.0.0+dfsg-6+rpi1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../libltdl7_2.4.2-1.11_armhf.deb ...
Unpacking libltdl7:armhf (2.4.2-1.11) ...
Selecting previously unselected package libglpk36:armhf.
Preparing to unpack .../libglpk36_4.55-1_armhf.deb ...
Unpacking libglpk36:armhf (4.55-1) ...
Selecting previously unselected package libklu1.2.1:armhf.
Preparing to unpack .../libklu1.2.1_1%3a4.2.1-3_armhf.deb ...
Unpacking libklu1.2.1:armhf (1:4.2.1-3) ...
Selecting previously unselected package libldl2.1.0:armhf.
Preparing to unpack .../libldl2.1.0_1%3a4.2.1-3_armhf.deb ...
Unpacking libldl2.1.0:armhf (1:4.2.1-3) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../libmpdec2_2.4.1-1_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.1-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../libexpat1-dev_2.1.0-6_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.1.0-6) ...
Selecting previously unselected package libpython2.7-dev:armhf.
Preparing to unpack .../libpython2.7-dev_2.7.10-3_armhf.deb ...
Unpacking libpython2.7-dev:armhf (2.7.10-3) ...
Selecting previously unselected package libpython3.4-minimal:armhf.
Preparing to unpack .../libpython3.4-minimal_3.4.3-7_armhf.deb ...
Unpacking libpython3.4-minimal:armhf (3.4.3-7) ...
Selecting previously unselected package libpython3.4-stdlib:armhf.
Preparing to unpack .../libpython3.4-stdlib_3.4.3-7_armhf.deb ...
Unpacking libpython3.4-stdlib:armhf (3.4.3-7) ...
Selecting previously unselected package libpython3.4:armhf.
Preparing to unpack .../libpython3.4_3.4.3-7_armhf.deb ...
Unpacking libpython3.4:armhf (3.4.3-7) ...
Selecting previously unselected package libpython3.4-dev:armhf.
Preparing to unpack .../libpython3.4-dev_3.4.3-7_armhf.deb ...
Unpacking libpython3.4-dev:armhf (3.4.3-7) ...
Selecting previously unselected package libspqr1.3.1:armhf.
Preparing to unpack .../libspqr1.3.1_1%3a4.2.1-3_armhf.deb ...
Unpacking libspqr1.3.1:armhf (1:4.2.1-3) ...
Selecting previously unselected package libumfpack5.6.2:armhf.
Preparing to unpack .../libumfpack5.6.2_1%3a4.2.1-3_armhf.deb ...
Unpacking libumfpack5.6.2:armhf (1:4.2.1-3) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package python3.4-minimal.
Preparing to unpack .../python3.4-minimal_3.4.3-7_armhf.deb ...
Unpacking python3.4-minimal (3.4.3-7) ...
Selecting previously unselected package python3-minimal.
Preparing to unpack .../python3-minimal_3.4.3-4_armhf.deb ...
Unpacking python3-minimal (3.4.3-4) ...
Selecting previously unselected package python3.4.
Preparing to unpack .../python3.4_3.4.3-7_armhf.deb ...
Unpacking python3.4 (3.4.3-7) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.4.3-4_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.4.3-4) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../dh-python_1.20150705-1_all.deb ...
Unpacking dh-python (1.20150705-1) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libpython3.4-minimal:armhf (3.4.3-7) ...
Setting up libexpat1:armhf (2.1.0-6) ...
Setting up python3.4-minimal (3.4.3-7) ...
Setting up python3-minimal (3.4.3-4) ...
Processing triggers for libc-bin (2.19-18) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14800 files and directories currently installed.)
Preparing to unpack .../python3_3.4.3-4_armhf.deb ...
Unpacking python3 (3.4.3-4) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ...
Unpacking sgml-base (1.26+nmu4) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.22+15-2_armhf.deb ...
Unpacking file (1:5.22+15-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.4-1_armhf.deb ...
Unpacking gettext-base (0.19.4-1) ...
Selecting previously unselected package cython.
Preparing to unpack .../cython_0.21.1-1_armhf.deb ...
Unpacking cython (0.21.1-1) ...
Selecting previously unselected package cython3.
Preparing to unpack .../cython3_0.21.1-1_armhf.deb ...
Unpacking cython3 (0.21.1-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.4-1_armhf.deb ...
Unpacking gettext (0.19.4-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.2) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150628_all.deb ...
Unpacking debhelper (9.20150628) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../xml-core_0.13+nmu2_all.deb ...
Unpacking xml-core (0.13+nmu2) ...
Selecting previously unselected package docutils-common.
Preparing to unpack .../docutils-common_0.12+dfsg-1_all.deb ...
Unpacking docutils-common (0.12+dfsg-1) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_1.2.20110419-10_armhf.deb ...
Unpacking libblas-dev (1.2.20110419-10) ...
Selecting previously unselected package libgmpxx4ldbl:armhf.
Preparing to unpack .../libgmpxx4ldbl_2%3a6.0.0+dfsg-7+rpi1_armhf.deb ...
Unpacking libgmpxx4ldbl:armhf (2:6.0.0+dfsg-7+rpi1) ...
Selecting previously unselected package libgmp-dev:armhf.
Preparing to unpack .../libgmp-dev_2%3a6.0.0+dfsg-7+rpi1_armhf.deb ...
Unpacking libgmp-dev:armhf (2:6.0.0+dfsg-7+rpi1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.5.0-4_armhf.deb ...
Unpacking liblapack-dev (3.5.0-4) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
Preparing to unpack .../libsuitesparse-dev_1%3a4.2.1-3_armhf.deb ...
Unpacking libsuitesparse-dev:armhf (1:4.2.1-3) ...
Selecting previously unselected package libglpk-dev.
Preparing to unpack .../libglpk-dev_4.55-1_armhf.deb ...
Unpacking libglpk-dev (4.55-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ...
Unpacking libjs-jquery (1.7.2+dfsg-3.2) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../libjs-underscore_1.7.0~dfsg-1_all.deb ...
Unpacking libjs-underscore (1.7.0~dfsg-1) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../libjs-sphinxdoc_1.2.3+dfsg-1_all.deb ...
Unpacking libjs-sphinxdoc (1.2.3+dfsg-1) ...
Selecting previously unselected package libpython-dev:armhf.
Preparing to unpack .../libpython-dev_2.7.9-1_armhf.deb ...
Unpacking libpython-dev:armhf (2.7.9-1) ...
Selecting previously unselected package libpython-all-dev:armhf.
Preparing to unpack .../libpython-all-dev_2.7.9-1_armhf.deb ...
Unpacking libpython-all-dev:armhf (2.7.9-1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../libpython3-dev_3.4.3-4_armhf.deb ...
Unpacking libpython3-dev:armhf (3.4.3-4) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../libpython3-all-dev_3.4.3-4_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.4.3-4) ...
Selecting previously unselected package python-all.
Preparing to unpack .../python-all_2.7.9-1_armhf.deb ...
Unpacking python-all (2.7.9-1) ...
Selecting previously unselected package python2.7-dev.
Preparing to unpack .../python2.7-dev_2.7.10-3_armhf.deb ...
Unpacking python2.7-dev (2.7.10-3) ...
Selecting previously unselected package python-dev.
Preparing to unpack .../python-dev_2.7.9-1_armhf.deb ...
Unpacking python-dev (2.7.9-1) ...
Selecting previously unselected package python-all-dev.
Preparing to unpack .../python-all-dev_2.7.9-1_armhf.deb ...
Unpacking python-all-dev (2.7.9-1) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../python-pkg-resources_17.0-1_all.deb ...
Unpacking python-pkg-resources (17.0-1) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../python-setuptools_17.0-1_all.deb ...
Unpacking python-setuptools (17.0-1) ...
Selecting previously unselected package python-six.
Preparing to unpack .../python-six_1.9.0-3_all.deb ...
Unpacking python-six (1.9.0-3) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../python3-all_3.4.3-4_armhf.deb ...
Unpacking python3-all (3.4.3-4) ...
Selecting previously unselected package python3.4-dev.
Preparing to unpack .../python3.4-dev_3.4.3-7_armhf.deb ...
Unpacking python3.4-dev (3.4.3-7) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../python3-dev_3.4.3-4_armhf.deb ...
Unpacking python3-dev (3.4.3-4) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../python3-all-dev_3.4.3-4_armhf.deb ...
Unpacking python3-all-dev (3.4.3-4) ...
Selecting previously unselected package python3-roman.
Preparing to unpack .../python3-roman_2.0.0-1_all.deb ...
Unpacking python3-roman (2.0.0-1) ...
Selecting previously unselected package python3-docutils.
Preparing to unpack .../python3-docutils_0.12+dfsg-1_all.deb ...
Unpacking python3-docutils (0.12+dfsg-1) ...
Selecting previously unselected package python3-markupsafe.
Preparing to unpack .../python3-markupsafe_0.23-2_armhf.deb ...
Unpacking python3-markupsafe (0.23-2) ...
Selecting previously unselected package python3-jinja2.
Preparing to unpack .../python3-jinja2_2.7.3-1_all.deb ...
Unpacking python3-jinja2 (2.7.3-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../python3-pkg-resources_17.0-1_all.deb ...
Unpacking python3-pkg-resources (17.0-1) ...
Selecting previously unselected package python3-pygments.
Preparing to unpack .../python3-pygments_2.0.1+dfsg-1.1_all.deb ...
Unpacking python3-pygments (2.0.1+dfsg-1.1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../python3-setuptools_17.0-1_all.deb ...
Unpacking python3-setuptools (17.0-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../python3-six_1.9.0-3_all.deb ...
Unpacking python3-six (1.9.0-3) ...
Selecting previously unselected package sphinx-common.
Preparing to unpack .../sphinx-common_1.2.3+dfsg-1_all.deb ...
Unpacking sphinx-common (1.2.3+dfsg-1) ...
Selecting previously unselected package python3-sphinx.
Preparing to unpack .../python3-sphinx_1.2.3+dfsg-1_all.deb ...
Unpacking python3-sphinx (1.2.3+dfsg-1) ...
Selecting previously unselected package sbuild-build-depends-python-cobra-dummy.
Preparing to unpack .../sbuild-build-depends-python-cobra-dummy.deb ...
Unpacking sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.4-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up mime-support (3.58) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libsqlite3-0:armhf (3.8.10.2-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.10-3) ...
Setting up libpython2.7:armhf (2.7.10-3) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up python2.7 (2.7.10-3) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libamd2.3.1:armhf (1:4.2.1-3) ...
Setting up libbtf1.2.0:armhf (1:4.2.1-3) ...
Setting up libcamd2.3.1:armhf (1:4.2.1-3) ...
Setting up libccolamd2.8.0:armhf (1:4.2.1-3) ...
Setting up gcc-5-base:armhf (5.1.1-12+rpi1) ...
Setting up libgfortran3:armhf (5.1.1-12+rpi1) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libcolamd2.8.0:armhf (1:4.2.1-3) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libcholmod2.1.2:armhf (1:4.2.1-3) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libcsparse3.1.2:armhf (1:4.2.1-3) ...
Setting up libcxsparse3.1.2:armhf (1:4.2.1-3) ...
Setting up libgmp10:armhf (2:6.0.0+dfsg-7+rpi1) ...
Setting up libltdl7:armhf (2.4.2-1.11) ...
Setting up libglpk36:armhf (4.55-1) ...
Setting up libklu1.2.1:armhf (1:4.2.1-3) ...
Setting up libldl2.1.0:armhf (1:4.2.1-3) ...
Setting up libmpdec2:armhf (2.4.1-1) ...
Setting up libexpat1-dev:armhf (2.1.0-6) ...
Setting up libpython2.7-dev:armhf (2.7.10-3) ...
Setting up libpython3.4-stdlib:armhf (3.4.3-7) ...
Setting up libpython3.4:armhf (3.4.3-7) ...
Setting up libpython3.4-dev:armhf (3.4.3-7) ...
Setting up libspqr1.3.1:armhf (1:4.2.1-3) ...
Setting up libumfpack5.6.2:armhf (1:4.2.1-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up python3.4 (3.4.3-7) ...
Setting up libpython3-stdlib:armhf (3.4.3-4) ...
Setting up sgml-base (1.26+nmu4) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.4-1) ...
Setting up cython (0.21.1-1) ...
Setting up gettext (0.19.4-1) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150628) ...
Setting up xml-core (0.13+nmu2) ...
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.0.0+dfsg-7+rpi1) ...
Setting up libgmp-dev:armhf (2:6.0.0+dfsg-7+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libsuitesparse-dev:armhf (1:4.2.1-3) ...
Setting up libglpk-dev (4.55-1) ...
Setting up libjs-jquery (1.7.2+dfsg-3.2) ...
Setting up libjs-underscore (1.7.0~dfsg-1) ...
Setting up libjs-sphinxdoc (1.2.3+dfsg-1) ...
Setting up libpython-dev:armhf (2.7.9-1) ...
Setting up libpython-all-dev:armhf (2.7.9-1) ...
Setting up libpython3-dev:armhf (3.4.3-4) ...
Setting up libpython3-all-dev:armhf (3.4.3-4) ...
Setting up python-all (2.7.9-1) ...
Setting up python2.7-dev (2.7.10-3) ...
Setting up python-dev (2.7.9-1) ...
Setting up python-all-dev (2.7.9-1) ...
Setting up python-pkg-resources (17.0-1) ...
Setting up python-setuptools (17.0-1) ...
Setting up python-six (1.9.0-3) ...
Setting up python3.4-dev (3.4.3-7) ...
Setting up sphinx-common (1.2.3+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up docutils-common (0.12+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up python3 (3.4.3-4) ...
Setting up cython3 (0.21.1-1) ...
Setting up python3-all (3.4.3-4) ...
Setting up python3-dev (3.4.3-4) ...
Setting up python3-all-dev (3.4.3-4) ...
Setting up python3-roman (2.0.0-1) ...
Setting up python3-docutils (0.12+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-markupsafe (0.23-2) ...
Setting up python3-jinja2 (2.7.3-1) ...
Setting up python3-pkg-resources (17.0-1) ...
Setting up python3-pygments (2.0.1+dfsg-1.1) ...
Setting up python3-setuptools (17.0-1) ...
Setting up python3-six (1.9.0-3) ...
Setting up python3-sphinx (1.2.3+dfsg-1) ...
Setting up dh-python (1.20150705-1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 cython_0.21.1-1 cython3_0.21.1-1 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150628 debianutils_4.4 dh-python_1.20150705-1 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 docutils-common_0.12+dfsg-1 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gcc-5-base_5.1.1-12+rpi1 gettext_0.19.4-1 gettext-base_0.19.4-1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libamd2.3.1_1:4.2.1-3 libapt-pkg4.12_1.0.9.8 libasan1_4.9.2-10 libasprintf0c2_0.19.4-1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbtf1.2.0_1:4.2.1-3 libbz2-1.0_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcamd2.3.1_1:4.2.1-3 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libccolamd2.8.0_1:4.2.1-3 libcholmod2.1.2_1:4.2.1-3 libcloog-isl4_0.18.2-1 libcolamd2.8.0_1:4.2.1-3 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcsparse3.1.2_1:4.2.1-3 libcxsparse3.1.2_1:4.2.1-3 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libexpat1-dev_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.1.1-12+rpi1 libglib2.0-0_2.44.1-1.1 libglpk-dev_4.55-1 libglpk36_4.55-1 libgmp-dev_2:6.0.0+dfsg-7+rpi1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgmpxx4ldbl_2:6.0.0+dfsg-7+rpi1 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libisl10_0.12.2-2 libjs-jquery_1.7.2+dfsg-3.2 libjs-sphinxdoc_1.2.3+dfsg-1 libjs-underscore_1.7.0~dfsg-1 libklibc_2.0.4-2+rpi1 libklu1.2.1_1:4.2.1-3 libkmod2_18-3 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldl2.1.0_1:4.2.1-3 liblocale-gettext-perl_1.05-8+b1 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpdec2_2.4.1-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-3 libpython2.7-dev_2.7.10-3 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libpython3-all-dev_3.4.3-4 libpython3-dev_3.4.3-4 libpython3-stdlib_3.4.3-4 libpython3.4_3.4.3-7 libpython3.4-dev_3.4.3-7 libpython3.4-minimal_3.4.3-7 libpython3.4-stdlib_3.4.3-7 libreadline6_6.3-8 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-6 libspqr1.3.1_1:4.2.1-3 libsqlite3-0_3.8.10.2-1 libss2_1.42.12-1.1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsuitesparse-dev_1:4.2.1-3 libsystemd0_215-17 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1 libubsan0_4.9.2-10 libudev1_215-17 libumfpack5.6.2_1:4.2.1-3 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.58 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-dev_2.7.9-1 python-minimal_2.7.9-1 python-pkg-resources_17.0-1 python-setuptools_17.0-1 python-six_1.9.0-3 python2.7_2.7.10-3 python2.7-dev_2.7.10-3 python2.7-minimal_2.7.10-3 python3_3.4.3-4 python3-all_3.4.3-4 python3-all-dev_3.4.3-4 python3-dev_3.4.3-4 python3-docutils_0.12+dfsg-1 python3-jinja2_2.7.3-1 python3-markupsafe_0.23-2 python3-minimal_3.4.3-4 python3-pkg-resources_17.0-1 python3-pygments_2.0.1+dfsg-1.1 python3-roman_2.0.0-1 python3-setuptools_17.0-1 python3-six_1.9.0-3 python3-sphinx_1.2.3+dfsg-1 python3.4_3.4.3-7 python3.4-dev_3.4.3-7 python3.4-minimal_3.4.3-7 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.2.3+dfsg-1 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 udev_215-17 util-linux_2.25.2-6 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Jul 11 06:39:41 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-cobra_0.4.0b1-2.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.4.0b1
dpkg-source: info: unpacking python-cobra_0.4.0b1.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.4.0b1-2.debian.tar.xz
dpkg-source: info: applying mathjax.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e901c7b0-530e-485c-aa97-08bc2b8cde25
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package python-cobra
dpkg-buildpackage: source version 0.4.0b1-2
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build python-cobra-0.4.0b1
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild
   dh_testdir -O--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_clean
I: pybuild base:170: python2.7 setup.py clean 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:170: python3.4 setup.py clean 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running clean
removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.4' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
LC_ALL=C.UTF-8 dh build-arch --with python2,python3 --buildsystem=pybuild
   dh_testdir -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py config 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running config
I: pybuild base:170: python3.4 setup.py config 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py build 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/test_all.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/salmonella_fbc.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/textbook.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/cobra
creating build/temp.linux-armv7l-2.7/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
I: pybuild base:170: /usr/bin/python3 setup.py build 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running build
running build_py
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/test_all.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
copying cobra/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/DictList.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Formula.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Gene.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Metabolite.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Model.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Object.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Solution.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/Species.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
copying cobra/core/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/json.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/mat.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
copying cobra/io/sbml3.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/coin.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/esolver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/mosek.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/parameters.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
copying cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/io_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/solvers.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
copying cobra/test/unit_tests.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
copying cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology
creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.json -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.mat -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/salmonella_fbc.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/textbook.xml -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data
copying cobra/VERSION -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra
running build_ext
building 'cobra.solvers.cglpk' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/cobra
creating build/temp.linux-armv7l-3.4/cobra/solvers
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py test 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
creating cobra.egg-info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.so
cobra/core/__init__.py:19 [1;31mUserWarning[0m: ArrayBasedModel requires scipy
cobra/io/__init__.py:16 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
cobra/io/__init__.py:22 [1;31mUserWarning[0m: cobra.io.mat requires scipy
cobra/flux_analysis/essentiality.py:5 [1;31mUserWarning[0m: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 [1;31mUserWarning[0m: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gene_knockout_computation (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_modify_reversible (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_remove_genes (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOcPickle) ... ok
test_gene_names (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'

----------------------------------------------------------------------
Ran 92 tests in 12.802s

OK (skipped=25)
I: pybuild base:170: python3.4 setup.py test 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running test
running egg_info
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing cobra.egg-info/PKG-INFO
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/cobra/solvers/cglpk.cpython-34m.so
cobra/core/__init__.py:19 [1;31mUserWarning[0m: ArrayBasedModel requires scipy
cobra/io/__init__.py:16 [1;31mUserWarning[0m: cobra.io.sbml requires libsbml
cobra/io/__init__.py:22 [1;31mUserWarning[0m: cobra.io.mat requires scipy
cobra/flux_analysis/essentiality.py:5 [1;31mUserWarning[0m: moma does not appear to be functional on your system
cobra/flux_analysis/__init__.py:18 [1;31mUserWarning[0m: double deletions and phase planes requires numpy
test_add_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraArrayModel)
test reaction addition ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_model_add (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_array_based_select (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_change_objective (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_copy (cobra.test.unit_tests.TestCobraArrayModel)
modifying copy should not modify the original ... skipped 'scipy required for ArrayBasedModel'
test_deepcopy (cobra.test.unit_tests.TestCobraArrayModel)
Reference structures are maintained when deepcopying ... skipped 'scipy required for ArrayBasedModel'
test_model_remove_reaction (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_delete (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_reaction_remove (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_remove_gene (cobra.test.unit_tests.TestCobraArrayModel) ... skipped 'scipy required for ArrayBasedModel'
test_metabolite_formula (cobra.test.unit_tests.TestCobraMetabolites) ... ok
test_add_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_from_other_model (cobra.test.unit_tests.TestCobraModel) ... ok
test_add_reaction_orphans (cobra.test.unit_tests.TestCobraModel)
test reaction addition ... ok
test_change_objective (cobra.test.unit_tests.TestCobraModel) ... ok
test_copy (cobra.test.unit_tests.TestCobraModel)
modifying copy should not modify the original ... ok
test_deepcopy (cobra.test.unit_tests.TestCobraModel)
Reference structures are maintained when deepcopying ... ok
test_model_remove_reaction (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_delete (cobra.test.unit_tests.TestCobraModel) ... ok
test_reaction_remove (cobra.test.unit_tests.TestCobraModel) ... ok
test_remove_gene (cobra.test.unit_tests.TestCobraModel) ... ok
testAdd (cobra.test.unit_tests.TestDictList) ... ok
testAppend (cobra.test.unit_tests.TestDictList) ... ok
testContains (cobra.test.unit_tests.TestDictList) ... ok
testCopy (cobra.test.unit_tests.TestDictList) ... ok
testDeepcopy (cobra.test.unit_tests.TestDictList) ... ok
testExtend (cobra.test.unit_tests.TestDictList) ... ok
testIadd (cobra.test.unit_tests.TestDictList) ... ok
testIndependent (cobra.test.unit_tests.TestDictList) ... ok
testIndex (cobra.test.unit_tests.TestDictList) ... ok
testInitCopy (cobra.test.unit_tests.TestDictList) ... ok
testInsert (cobra.test.unit_tests.TestDictList) ... ok
testPickle (cobra.test.unit_tests.TestDictList) ... ok
testQuery (cobra.test.unit_tests.TestDictList) ... ok
testRemoval (cobra.test.unit_tests.TestDictList) ... ok
testSet (cobra.test.unit_tests.TestDictList) ... ok
testSlice (cobra.test.unit_tests.TestDictList) ... ok
testGPR (cobra.test.unit_tests.TestReactions) ... ok
testGPR_modification (cobra.test.unit_tests.TestReactions) ... ok
test_add_metabolite (cobra.test.unit_tests.TestReactions)
adding a metabolite to a reaction in a model ... ok
test_build_from_string (cobra.test.unit_tests.TestReactions) ... ok
test_mass_balance (cobra.test.unit_tests.TestReactions) ... ok
test_subtract_metabolite (cobra.test.unit_tests.TestReactions) ... ok
test_attributes (cobra.test.solvers.cglpkTester) ... ok
test_change_coefficient (cobra.test.solvers.cglpkTester) ... ok
test_creation (cobra.test.solvers.cglpkTester) ... ok
test_independent_creation (cobra.test.solvers.cglpkTester) ... ok
test_inequality (cobra.test.solvers.cglpkTester) ... ok
test_low_level_control (cobra.test.solvers.cglpkTester) ... ok
test_quadratic (cobra.test.solvers.cglpkTester) ... skipped 'scipy required for quadratic objectives'
test_set_objective_sense (cobra.test.solvers.cglpkTester) ... ok
test_solve_feasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_infeasible (cobra.test.solvers.cglpkTester) ... ok
test_solve_minimize (cobra.test.solvers.cglpkTester) ... ok
test_solve_mip (cobra.test.solvers.cglpkTester) ... ok
test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_double_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... skipped 'double deletions require numpy'
test_find_blocked_reactions (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_flux_variability (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gapfilling (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_gene_knockout_computation (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_loopless (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_modify_reversible (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_pFBA (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_remove_genes (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_single_reaction_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ok
test_read (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOPickle) ... ok
test_read (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLcobra) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLfbc1) ... skipped 'libsbml required'
test_read (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOSBMLfbc2) ... ok
test_read (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOcPickle) ... skipped 'cPickle required'
test_gene_names (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read_nonexistent (cobra.test.io_tests.TestCobraIOjson) ... ok
test_write_and_reread (cobra.test.io_tests.TestCobraIOjson) ... ok
test_read (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_read_nonexistent (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'
test_write_and_reread (cobra.test.io_tests.TestCobraIOmat) ... skipped 'scipy required'

----------------------------------------------------------------------
Ran 92 tests in 14.942s

OK (skipped=28)
 fakeroot debian/rules binary-arch
LC_ALL=C.UTF-8 dh binary-arch --with python2,python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py install --root /«PKGBUILDDIR»/debian/python-cobra 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so
running install_lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test_all.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/solvers/cglpk.so -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/salmonella_fbc.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/textbook.xml -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test_all.py to test_all.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/version.py to version.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/DictList.py to DictList.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Formula.py to Formula.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Gene.py to Gene.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py to Metabolite.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Model.py to Model.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Object.py to Object.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py to Reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Solution.py to Solution.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/Species.py to Species.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/core/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py to moma.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py to variability.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/json.py to json.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/mat.py to mat.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml.py to sbml.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py to sbml3.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py to delete.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py to modify.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py to coin.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py to esolver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py to mosek.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py to parameters.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py to wrappers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py to flux_analysis.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py to io_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/solvers.py to solvers.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py to unit_tests.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py to __init__.pyc
byte-compiling /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.pyc
running install_egg_info
running egg_info
writing requirements to cobra.egg-info/requires.txt
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python-cobra/usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info
running install_scripts
I: pybuild base:170: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/python3-cobra 
Compiling cobra/solvers/cglpk.pyx because it changed.
Cythonizing cobra/solvers/cglpk.pyx
running install
running build
running build_py
running build_ext
building 'cobra.solvers.cglpk' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c cobra/solvers/cglpk.c -o build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/cobra/solvers/cglpk.o -lglpk -o /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so
running install_lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test_all.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/version.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/ArrayBasedModel.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/DictList.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Formula.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Gene.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Metabolite.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Model.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Object.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Solution.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/Species.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/core/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/deletion_worker.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/double_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/essentiality.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/gapfilling.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/loopless.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/moma.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/parsimonious.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/phenotype_phase_plane.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/reaction.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/single_deletion.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/flux_analysis/variability.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/json.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/mat.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/io/sbml3.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/delete.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/manipulation/modify.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/coin.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cplex_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/esolver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/glpk_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/gurobi_solver_java.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/mosek.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/parameters.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/wrappers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers
renaming extension cglpk.cpython-34m.so -> cglpk.cpython-34m-arm-linux-gnueabihf.so
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/solvers/cglpk.cpython-34m.so -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/flux_analysis.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/io_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/solvers.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/unit_tests.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/iJO1366.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.json -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.mat -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_cobra.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc1.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/mini_fbc2.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.genes -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.media -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.pickle -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/salmonella_fbc.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/textbook.xml -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/test/data/update_pickles.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data
creating /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/__init__.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/topology/reporter_metabolites.py -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology
copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/cobra/VERSION -> /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test_all.py to test_all.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/version.py to version.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/ArrayBasedModel.py to ArrayBasedModel.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/DictList.py to DictList.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Formula.py to Formula.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Gene.py to Gene.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Metabolite.py to Metabolite.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Model.py to Model.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Object.py to Object.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Reaction.py to Reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Solution.py to Solution.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/Species.py to Species.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/core/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/deletion_worker.py to deletion_worker.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/double_deletion.py to double_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/essentiality.py to essentiality.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/single_deletion.py to single_deletion.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/json.py to json.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/mat.py to mat.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml.py to sbml.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/io/sbml3.py to sbml3.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/delete.py to delete.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/manipulation/modify.py to modify.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/coin.py to coin.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver.py to cplex_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py to cplex_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/esolver.py to esolver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver.py to glpk_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py to glpk_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver.py to gurobi_solver.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py to gurobi_solver_java.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/mosek.py to mosek.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/parameters.py to parameters.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/solvers/wrappers.py to wrappers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/flux_analysis.py to flux_analysis.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/io_tests.py to io_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/solvers.py to solvers.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/unit_tests.py to unit_tests.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/__init__.py to __init__.cpython-34.pyc
byte-compiling /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra/topology/reporter_metabolites.py to reporter_metabolites.cpython-34.pyc
running install_egg_info
running egg_info
writing cobra.egg-info/PKG-INFO
writing top-level names to cobra.egg-info/top_level.txt
writing requirements to cobra.egg-info/requires.txt
writing dependency_links to cobra.egg-info/dependency_links.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /«PKGBUILDDIR»/debian/python3-cobra/usr/lib/python3.4/dist-packages/cobra-0.4.0b1.egg-info
running install_scripts
  File "/usr/lib/python3.4/dist-packages/cobra/solvers/cplex_solver_java.py", line 318
    print '%s failed: %s'%(solver_name, status)
                        ^
SyntaxError: invalid syntax

  File "/usr/lib/python3.4/dist-packages/cobra/solvers/glpk_solver_java.py", line 86
    except Exception, e1:
                    ^
SyntaxError: invalid syntax

  File "/usr/lib/python3.4/dist-packages/cobra/solvers/gurobi_solver_java.py", line 73
    except Exception, e:
                    ^
SyntaxError: invalid syntax

   debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build.
dh_install --remaining-packages
make[1]: Leaving directory '/«PKGBUILDDIR»'
   debian/rules override_dh_installdocs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installdocs -Xexample
make[1]: Leaving directory '/«PKGBUILDDIR»'
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:298: renaming cglpk.so to cglpk.arm-linux-gnueabihf.so
   dh_python3 -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cobra/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cobra/usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-cobra: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-cobra: unused substitution variable ${python3:Provides}
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package `python3-cobra' in `../python3-cobra_0.4.0b1-2_armhf.deb'.
dpkg-deb: building package `python-cobra' in `../python-cobra_0.4.0b1-2_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.4.0b1-2_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build python-cobra-0.4.0b1
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150716-0848

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


python-cobra_0.4.0b1-2_armhf.changes:
─────────────────────────────────────

Format: 1.8
Date: Fri, 10 Jul 2015 18:35:52 -0700
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: armhf
Version: 0.4.0b1-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Closes: 792058
Changes:
 python-cobra (0.4.0b1-2) unstable; urgency=medium
 .
   * Add more recommended packages in d/control
   * Add suggestion of jython for python-cobra
   * Really remove jython files from python3-package.
     Thanks to Aaron Ucko for the bug report (Closes: 792058)
Checksums-Sha1:
 489c9ff6b27ddcc94fa4036d7bb234fb38b8bcda 131876 python-cobra_0.4.0b1-2_armhf.deb
 733c428069b1ce9320c1d79186a50574c240d5d4 126564 python3-cobra_0.4.0b1-2_armhf.deb
Checksums-Sha256:
 78eca1586afee98525224744380c90cb7a2e455931103936d68b4264b48c78e5 131876 python-cobra_0.4.0b1-2_armhf.deb
 306d6135bb39a2df9df992a0d281aa895183ec37f001b6cff03b41b74c182b50 126564 python3-cobra_0.4.0b1-2_armhf.deb
Files:
 95c1145f1220147a8541ee115da713c8 131876 python optional python-cobra_0.4.0b1-2_armhf.deb
 04999e9b6b3f6a2d94a7e785ba3d0cfe 126564 python optional python3-cobra_0.4.0b1-2_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


python-cobra_0.4.0b1-2_armhf.deb
────────────────────────────────

 new debian package, version 2.0.
 size 131876 bytes: control archive=3144 bytes.
    1061 bytes,    21 lines      control              
    5764 bytes,    62 lines      md5sums              
     160 bytes,     9 lines   *  postinst             #!/bin/sh
     259 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-cobra
 Version: 0.4.0b1-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 579
 Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python (<< 2.8), python (>= 2.7~), python-six, python:any (>= 2.7.5-5~)
 Recommends: python-cobra-data, python-numpy, python-scipy, libsbml5-python, python-matplotlib, python-pandas
 Suggests: jython
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 2)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 2 module.

drwxr-xr-x root/root         0 2015-07-16 08:47 ./
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/
drwxr-xr-x root/root         0 2015-07-16 08:46 ./usr/lib/
drwxr-xr-x root/root         0 2015-07-16 08:46 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2015-07-16 08:46 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info/
-rw-r--r-- root/root      3465 2015-07-16 08:46 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2015-07-16 08:46 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info/dependency_links.txt
-rw-r--r-- root/root       246 2015-07-16 08:46 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info/requires.txt
-rw-r--r-- root/root         6 2015-07-16 08:46 ./usr/lib/python2.7/dist-packages/cobra-0.4.0b1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/
-rw-r--r-- root/root         8 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/VERSION
-rw-r--r-- root/root       919 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/core/
-rw-r--r-- root/root     16587 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root     12123 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root      5315 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root      6416 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      7630 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     13965 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root      1841 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     23758 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root      1231 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root      1692 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root       442 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       673 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root      5948 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root     23264 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root      3063 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root      7068 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root      2523 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root      4379 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root      2676 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root     12220 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root      7089 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root      7047 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      4432 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/io/
-rw-r--r-- root/root       617 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root      5050 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/io/json.py
-rw-r--r-- root/root      7889 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root     29672 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root     17209 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/manipulation/
-rw-r--r-- root/root       184 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root      8601 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root      9204 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/
-rw-r--r-- root/root      3964 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root    150144 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.arm-linux-gnueabihf.so
-rw-r--r-- root/root      4214 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root     13233 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root     11819 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
-rw-r--r-- root/root      6286 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root      9552 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root     14112 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
-rw-r--r-- root/root      9386 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root     10539 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
-rw-r--r-- root/root      8435 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root      7741 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root      1114 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/test/
-rw-r--r-- root/root      1868 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test/__init__.py
lrwxrwxrwx root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root     19610 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py
-rw-r--r-- root/root      6411 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test/io_tests.py
-rw-r--r-- root/root     12331 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test/solvers.py
-rw-r--r-- root/root     28888 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py
-rw-r--r-- root/root       207 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/test_all.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python2.7/dist-packages/cobra/topology/
-rw-r--r-- root/root       248 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6653 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2015-07-06 20:47 ./usr/lib/python2.7/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/doc/python-cobra/
-rw-r--r-- root/root      1887 2015-07-06 20:47 ./usr/share/doc/python-cobra/README.md
-rw-r--r-- root/root       675 2015-07-11 06:37 ./usr/share/doc/python-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2011 2015-07-11 06:37 ./usr/share/doc/python-cobra/copyright


python3-cobra_0.4.0b1-2_armhf.deb
─────────────────────────────────

 new debian package, version 2.0.
 size 126564 bytes: control archive=3091 bytes.
    1030 bytes,    21 lines      control              
    5292 bytes,    58 lines      md5sums              
     170 bytes,     9 lines   *  postinst             #!/bin/sh
     399 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.4.0b1-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 538
 Depends: libc6 (>= 2.4), libglpk36 (>= 4.51), python3 (<< 3.5), python3 (>= 3.4~), python3-six
 Recommends: python-cobra-data, python3-numpy, python3-scipy, python3-matplotlib, python3-pandas
 Section: python
 Priority: optional
 Homepage: http://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks (Python 3)
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.
  .
  This package provides the Python 3 module.

drwxr-xr-x root/root         0 2015-07-16 08:47 ./
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra-0.4.0b1.egg-info/
-rw-r--r-- root/root      3465 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra-0.4.0b1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra-0.4.0b1.egg-info/dependency_links.txt
-rw-r--r-- root/root       246 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra-0.4.0b1.egg-info/requires.txt
-rw-r--r-- root/root         6 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra-0.4.0b1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root         8 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/VERSION
-rw-r--r-- root/root       919 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root     16587 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/ArrayBasedModel.py
-rw-r--r-- root/root     12123 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/DictList.py
-rw-r--r-- root/root      5315 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Formula.py
-rw-r--r-- root/root      6416 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Gene.py
-rw-r--r-- root/root      7630 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Metabolite.py
-rw-r--r-- root/root     13965 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Model.py
-rw-r--r-- root/root      1841 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Object.py
-rw-r--r-- root/root     23758 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Reaction.py
-rw-r--r-- root/root      1231 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Solution.py
-rw-r--r-- root/root      1692 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/Species.py
-rw-r--r-- root/root       442 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/core/__init__.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       673 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root      5948 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion_worker.py
-rw-r--r-- root/root     23264 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/double_deletion.py
-rw-r--r-- root/root      3063 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/essentiality.py
-rw-r--r-- root/root      7068 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root      2523 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root      4379 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root      2676 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root     12220 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root      7089 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root      7047 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/single_deletion.py
-rw-r--r-- root/root      4432 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root       617 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root      5050 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root      7889 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root     29672 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root     17209 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/io/sbml3.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root       184 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root      8601 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root      9204 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/solvers/
-rw-r--r-- root/root      3964 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/__init__.py
-rw-r--r-- root/root    146096 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/solvers/cglpk.cpython-34m-arm-linux-gnueabihf.so
-rw-r--r-- root/root      4214 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/coin.py
-rw-r--r-- root/root     13233 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/cplex_solver.py
-rw-r--r-- root/root      6286 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/esolver.py
-rw-r--r-- root/root      9552 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/glpk_solver.py
-rw-r--r-- root/root      9386 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/gurobi_solver.py
-rw-r--r-- root/root      8435 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/mosek.py
-rw-r--r-- root/root      7741 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/parameters.py
-rw-r--r-- root/root      1114 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/solvers/wrappers.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/test/
-rw-r--r-- root/root      1868 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test/__init__.py
lrwxrwxrwx root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root     19610 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test/flux_analysis.py
-rw-r--r-- root/root      6411 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test/io_tests.py
-rw-r--r-- root/root     12331 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test/solvers.py
-rw-r--r-- root/root     28888 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test/unit_tests.py
-rw-r--r-- root/root       207 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/test_all.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/lib/python3/dist-packages/cobra/topology/
-rw-r--r-- root/root       248 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/topology/__init__.py
-rw-r--r-- root/root      6653 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/topology/reporter_metabolites.py
-rw-r--r-- root/root      4585 2015-07-06 20:47 ./usr/lib/python3/dist-packages/cobra/version.py
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-07-16 08:47 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root       675 2015-07-11 06:37 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2011 2015-07-11 06:37 ./usr/share/doc/python3-cobra/copyright


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 50416
Build-Time: 552
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 563
Job: python-cobra_0.4.0b1-2
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1177
Source-Version: 0.4.0b1-2
Space: 50416
Status: successful
Version: 0.4.0b1-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20150716-0848
Build needed 00:19:37, 50416k disc space
Raspbian Package Auto-Building

Build log for python-cobra (0.4.0b1-2) on armhf
