python-cobra →
0.26.2-1 →
armhf → 2023-02-11 07:04:52
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| python-cobra 0.26.2-1 (armhf) Sat, 11 Feb 2023 06:32:50 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.26.2-1
Source Version: 0.26.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-a64e7cb2-e629-42fb-9966-542b56e7ca7e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
Fetched 28.2 MB in 12s (2312 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3763 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.2-1 (dsc) [3230 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.2-1 (tar) [3751 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.2-1 (diff) [8516 B]
Fetched 3763 kB in 1s (6803 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-QMU9rO/python-cobra-0.26.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-QMU9rO' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-UTxHDq/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-UTxHDq/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-UTxHDq/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (3603 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 90 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (56.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-UTxHDq/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Sources [720 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ Packages [781 B]
Fetched 2834 B in 1s (4721 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common blt bsdextrautils
ca-certificates cpp-12 cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core
fonts-lyx g++-12 gcc-12 gcc-12-base gettext gettext-base groff-base
intltool-debian libamd2 libarchive-zip-perl libasan8 libatomic1 libbinutils
libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libcc1-0
libccolamd2 libcholmod3 libcolamd2 libctf-nobfd0 libctf0 libcxsparse3
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0 libglpk-dev libglpk40
libgmp-dev libgmpxx4ldbl libgomp1 libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0
liblcms2-2 libldl2 liblerc4 libltdl7 libmagic-mgc libmagic1 libmd0 libmetis5
libmongoose2 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
libraqm0 librbio2 libsbml5 libsliplu1 libspqr2 libssl3 libstdc++-12-dev
libstdc++6 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtcl8.6 libtiff6 libtk8.6 libtool libubsan1 libuchardet0 libumfpack5
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db
media-types openssl po-debconf python-matplotlib-data python3 python3-anyio
python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-contourpy
python3-cpuinfo python3-cycler python3-dateutil python3-decorator
python3-depinfo python3-dev python3-diskcache python3-distutils
python3-fonttools python3-fs python3-future python3-h11 python3-httpcore
python3-httpx python3-idna python3-importlib-resources python3-iniconfig
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-markdown-it python3-matplotlib python3-mdurl
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pil python3-pil.imagetk python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-py python3-pydantic
python3-pygments python3-pyparsing python3-pyrsistent python3-pytest
python3-pytest-benchmark python3-pytest-mock python3-requests
python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib
python3-sbml5 python3-scipy python3-setuptools python3-simplejson
python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate
python3-tk python3-typing-extensions python3-tz python3-ufolib2
python3-unicodedata2 python3-urllib3 python3-wheel python3-zipp python3.10
python3.10-minimal python3.11 python3.11-dev python3.11-minimal swig swig4.0
tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc blt-demo
gcc-12-locales cpp-12-doc cython-doc dh-make flit python3-build
python3-tomli python3-installer gcc-12-doc gettext-doc libasprintf-dev
libgettextpo-dev groff liblapack-doc low-memory-monitor libiodbc2-dev
default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
libjs-jquery-ui-docs liblcms2-utils libstdc++-12-doc tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
python-cycler-doc python-future-doc python-jsonschema-doc python-lxml-doc
cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python3-cairocffi python3-gi
python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
gfortran python-pandas-doc python3-statsmodels python-pil-doc subversion
python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python-pytest-mock-doc python3-mock python3-cryptography python3-openssl
python3-socks python-requests-doc python-scipy-doc python-setuptools-doc
texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv
python3.10-doc binfmt-support python3.11-venv python3.11-doc swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libgraphblas-dev libltdl-dev
libmail-sendmail-perl python3-json-pointer python3-rfc3987
python3-uritemplate python3-webcolors python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl
python3-tables python3-jinja2 python3-olefile python3-graphviz
python3-elasticsearch python3-freezegun python3-pygal isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3
libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
libcxsparse3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2
libldl2 liblerc4 libltdl7 libmagic-mgc libmagic1 libmd0 libmetis5
libmongoose2 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
libraqm0 librbio2 libsbml5 libsliplu1 libspqr2 libsub-override-perl
libsuitesparse-dev libsuitesparseconfig5 libtcl8.6 libtiff6 libtk8.6 libtool
libuchardet0 libumfpack5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types openssl po-debconf
python-matplotlib-data python3 python3-anyio python3-appdirs python3-attr
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-contourpy python3-cpuinfo
python3-cycler python3-dateutil python3-decorator python3-depinfo
python3-dev python3-diskcache python3-distutils python3-fonttools python3-fs
python3-future python3-h11 python3-httpcore python3-httpx python3-idna
python3-importlib-resources python3-iniconfig python3-jsonschema
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markdown-it python3-matplotlib python3-mdurl python3-minimal
python3-more-itertools python3-mpmath python3-numpy python3-optlang
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pip python3-pipdeptree python3-pkg-resources
python3-pluggy python3-py python3-pydantic python3-pygments
python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
python3-pytest-mock python3-requests python3-rfc3986 python3-rich
python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-scipy
python3-setuptools python3-simplejson python3-six python3-sniffio
python3-swiglpk python3-sympy python3-tabulate python3-tk
python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-wheel python3-zipp python3.10 python3.10-minimal
python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-python-cobra-dummy swig swig4.0 tk8.6-blt2.5
unicode-data x11-common zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-12 g++-12 gcc-12
gcc-12-base libasan8 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0
libgcc-12-dev libgcc-s1 libgomp1 libssl3 libstdc++-12-dev libstdc++6
libubsan1
20 upgraded, 210 newly installed, 0 to remove and 70 not upgraded.
Need to get 164 MB of archives.
After this operation, 555 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UTxHDq/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1068 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-14+rpi1 [861 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-14+rpi1 [37.7 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-14+rpi1 [504 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-14+rpi1 [95.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-14+rpi1 [8240 B]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-14+rpi1 [2088 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-14+rpi1 [7159 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-14+rpi1 [32.2 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libctf0 armhf 2.40-2+rpi1 [71.6 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libctf-nobfd0 armhf 2.40-2+rpi1 [133 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.40-2+rpi1 [2067 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libbinutils armhf 2.40-2+rpi1 [407 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf binutils-common armhf 2.40-2+rpi1 [2475 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf binutils armhf 2.40-2+rpi1 [65.3 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-14+rpi1 [7914 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-14+rpi1 [14.2 MB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-14+rpi1 [727 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-14+rpi1 [2027 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-14+rpi1 [36.3 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-2 [1614 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.1-3 [25.9 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.1-3 [8960 B]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.1-3 [25.9 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.9-1 [769 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.9-1 [1477 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-2 [1349 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-11 [156 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-11 [495 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-4 [329 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.14.1-4 [315 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.14.1-4 [366 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.3-3 [292 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.3-3 [687 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2+b1 [1507 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-11 [1204 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20230130 [104 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparseconfig5 armhf 1:5.12.0+dfsg-2 [23.6 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libamd2 armhf 1:5.12.0+dfsg-2 [30.2 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libbtf1 armhf 1:5.12.0+dfsg-2 [24.1 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libcamd2 armhf 1:5.12.0+dfsg-2 [30.7 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libccolamd2 armhf 1:5.12.0+dfsg-2 [31.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libcolamd2 armhf 1:5.12.0+dfsg-2 [28.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libcholmod3 armhf 1:5.12.0+dfsg-2 [212 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libcxsparse3 armhf 1:5.12.0+dfsg-2 [52.1 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.5-1 [1204 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.7-5 [390 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libglpk40 armhf 5.0-1 [327 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg1-1.1 [338 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg1-1.1 [582 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libklu1 armhf 1:5.12.0+dfsg-2 [51.8 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libldl2 armhf 1:5.12.0+dfsg-2 [23.8 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libmongoose2 armhf 1:5.12.0+dfsg-2 [43.8 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libumfpack5 armhf 1:5.12.0+dfsg-2 [128 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf librbio2 armhf 1:5.12.0+dfsg-2 [32.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libspqr2 armhf 1:5.12.0+dfsg-2 [68.2 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libsliplu1 armhf 1:5.12.0+dfsg-2 [49.5 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparse-dev armhf 1:5.12.0+dfsg-2 [614 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libglpk-dev armhf 5.0-1 [369 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1894 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.14-1+b1 [124 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [164 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11 armhf 3.11.1-2 [1666 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-dev armhf 3.11.1-2 [3375 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.11.1-3 [9200 B]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1597 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4.1 [9176 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libsbml5 armhf 5.19.7+dfsg-2 [1702 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libtiff6 armhf 4.5.0-4 [292 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.4 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.4-0.1 [106 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-sniffio all 1.2.0-1 [6372 B]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-typing-extensions all 4.4.0-1 [45.2 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-anyio all 3.6.2-1 [54.0 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b3 [278 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.6-2 [36.8 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.1.3-2 [92.2 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.9-1 [509 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.24.1-2 [5318 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-contourpy armhf 1.0.6-2+rpi1 [159 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-cpuinfo all 5.0.0-5 [19.2 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-depinfo armhf 2.2.0-1 [11.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3.11-dev armhf 3.11.1-2 [618 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.11.1-3 [26.2 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-diskcache all 5.4.0-1 [33.7 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-22+rpi1 [12.9 MB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.7.1-1 [32.1 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.2-1 [1528 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1+b1 [298 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.38.0-1 [1047 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-6 [348 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-h11 all 0.14.0-1 [50.1 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-httpcore all 0.16.3-1 [38.4 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.14.0+dfsg-1 [783 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-mdurl all 0.1.2-1 [9444 B]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-markdown-it all 2.1.0-4 [58.6 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-rich all 13.2.0-2 [202 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-rfc3986 all 1.5.0-2 [22.2 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-httpx all 0.23.3-1 [72.3 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-6 [6696 B]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-resources all 5.1.2-2 [19.0 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-pyrsistent armhf 0.18.1-1+b1 [57.6 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-jsonschema all 4.10.3-1 [67.9 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.4.0-1.1 [436 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.8-1 [101 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.4.0-1.1 [73.9 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.9-1 [138 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf python3-swiglpk armhf 4.65.1-1+b2 [55.4 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf python3-optlang all 1.5.2-1 [81.2 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-1+rpi1 [2991 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.5.3+dfsg-1+rpi1 [2871 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 66.1.1-1 [521 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf python3-wheel all 0.38.4-1 [30.8 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf python3-pip all 23.0+dfsg-2 [1325 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf python3-pipdeptree armhf 2.2.0-3 [20.6 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf python3-pydantic all 1.10.4-1 [171 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.2.1-2 [236 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-benchmark all 3.2.2-3 [46.4 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-mock all 3.8.2-3 [16.5 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.7-1+b1 [94.2 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml all 0.17.21-1 [103 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.1.0-0.2 [1220 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.1.0-0.2 [321 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf python3-sbml5 armhf 5.19.7+dfsg-2 [2918 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf python3-simplejson armhf 3.18.1-1 [63.4 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf python3-tabulate all 0.8.9-1 [35.2 kB]
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Setting up media-types (8.0.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
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Setting up cpp-12 (12.2.0-14+rpi1) ...
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Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-4) ...
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.74.5-1) ...
No schema files found: doing nothing.
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Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up binutils-common:armhf (2.40-2+rpi1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libldl2:armhf (1:5.12.0+dfsg-2) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up libctf-nobfd0:armhf (2.40-2+rpi1) ...
Setting up gettext-base (0.21-11) ...
Setting up m4 (1.4.19-3) ...
Setting up libqhull-r8.0:armhf (2020.2-5) ...
Setting up libmetis5:armhf (5.1.0.dfsg-7) ...
Setting up file (1:5.44-3) ...
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Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libbtf1:armhf (1:5.12.0+dfsg-2) ...
Setting up unicode-data (15.0.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libexpat1-dev:armhf (2.5.0-1) ...
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Setting up libpython3.10-minimal:armhf (3.10.9-1) ...
Setting up autopoint (0.21-11) ...
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Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
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Setting up libwebp7:armhf (1.2.4-0.1) ...
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Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up libmd0:armhf (1.0.4-2) ...
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Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libopenjp2-7:armhf (2.5.0-1+b1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libcxsparse3:armhf (1:5.12.0+dfsg-2) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libbinutils:armhf (2.40-2+rpi1) ...
Setting up swig4.0 (4.1.0-0.2) ...
Setting up python-matplotlib-data (3.6.3-1) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
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Setting up libcc1-0:armhf (12.2.0-14+rpi1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
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Setting up libxslt1.1:armhf (1.1.35-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-swiglpk (4.65.1-1+b2) ...
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Setting up python3-lz4 (4.0.2+dfsg-1+b1) ...
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Setting up python3-pytest (7.2.1-2) ...
Setting up python3-unicodedata2 (14.0.0+ds2-1+b1) ...
Setting up python3-ruamel.yaml.clib:armhf (0.2.7-1+b1) ...
Setting up python3-tabulate (0.8.9-1) ...
Setting up debhelper (13.11.4) ...
Setting up python3-zipp (1.0.0-6) ...
Setting up python3-click (8.1.3-2) ...
Setting up python3-wheel (0.38.4-1) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-pygments (2.14.0+dfsg-1) ...
Setting up python3-chardet (5.1.0+dfsg-2) ...
Setting up python3-rfc3986 (1.5.0-2) ...
Setting up python3-jsonschema (4.10.3-1) ...
Setting up libglpk-dev:armhf (5.0-1) ...
Setting up python3-pydantic (1.10.4-1) ...
Setting up python3-dev (3.11.1-3) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-depinfo (2.2.0-1) ...
Setting up python3-pip (23.0+dfsg-2) ...
Setting up python3-numpy (1:1.24.1-2) ...
Setting up python3-ruamel.yaml (0.17.21-1) ...
Setting up python3-pytest-mock (3.8.2-3) ...
Setting up python3-contourpy (1.0.6-2+rpi1) ...
Setting up python3-future (0.18.2-6) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (2.2.0-3) ...
Setting up python3-optlang (1.5.2-1) ...
Setting up python3-pytest-benchmark (3.2.2-3) ...
Setting up python3-httpcore (0.16.3-1) ...
Setting up python3-scipy (1.8.1-22+rpi1) ...
Setting up python3-importlib-resources (5.1.2-2) ...
Setting up python3-rich (13.2.0-2) ...
Setting up python3-pandas-lib:armhf (1.5.3+dfsg-1+rpi1) ...
Setting up python3-pandas (1.5.3+dfsg-1+rpi1) ...
Setting up python3-httpx (0.23.3-1) ...
Setting up python3-ufolib2 (0.14.0+dfsg1-1) ...
Setting up python3-fonttools (4.38.0-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.1-4) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.8-1) ...
Setting up python3-pil.imagetk:armhf (9.4.0-1.1) ...
Setting up python3-pil:armhf (9.4.0-1.1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 cython3_0.29.32-2+b1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-3 fontconfig-config_2.14.1-4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.7-1 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-11 gettext-base_0.21-11 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libamd2_1:5.12.0+dfsg-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.40-2+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbtf1_1:5.12.0+dfsg-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcamd2_1:5.12.0+dfsg-2 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-14+rpi1 libccolamd2_1:5.12.0+dfsg-2 libcholmod3_1:5.12.0+dfsg-2 libcolamd2_1:5.12.0+dfsg-2 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcxsparse3_1:5.12.0+dfsg-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.1-4 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.5-1 libglpk-dev_5.0-1 libglpk40_5.0-1 libgmp-dev_2:6.2.1+dfsg1-1.1 libgmp10_2:6.2.1+dfsg1-1.1 libgmpxx4ldbl_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 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libsuitesparse-dev_1:5.12.0+dfsg-2 libsuitesparseconfig5_1:5.12.0+dfsg-2 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-2 libtiff6_4.5.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libumfpack5_1:5.12.0+dfsg-2 libunistring2_1.0-2 libuuid1_2.38.1-4 libwebp7_1.2.4-0.1 libwebpdemux2_1.2.4-0.1 libwebpmux3_1.2.4-0.1 libx11-6_2:1.8.3-3 libx11-data_2:1.8.3-3 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1+b1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 openssl_3.0.7-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.6.3-1 python3_3.11.1-3 python3-anyio_3.6.2-1 python3-appdirs_1.4.4-3 python3-attr_22.2.0-1 python3-brotli_1.0.9-2+b3 python3-certifi_2022.9.24-1 python3-chardet_5.1.0+dfsg-2 python3-charset-normalizer_3.0.1-2 python3-click_8.1.3-2 python3-colorama_0.4.6-2 python3-contourpy_1.0.6-2+rpi1 python3-cpuinfo_5.0.0-5 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-1 python3-decorator_5.1.1-3 python3-depinfo_2.2.0-1 python3-dev_3.11.1-3 python3-diskcache_5.4.0-1 python3-distutils_3.10.8-1 python3-fonttools_4.38.0-1 python3-fs_2.4.16-2 python3-future_0.18.2-6 python3-h11_0.14.0-1 python3-httpcore_0.16.3-1 python3-httpx_0.23.3-1 python3-idna_3.3-1 python3-importlib-resources_5.1.2-2 python3-iniconfig_1.1.1-2 python3-jsonschema_4.10.3-1 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.10.8-1 python3-lxml_4.9.2-1 python3-lz4_4.0.2+dfsg-1+b1 python3-markdown-it_2.1.0-4 python3-matplotlib_3.6.3-1 python3-mdurl_0.1.2-1 python3-minimal_3.11.1-3 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.1-2 python3-optlang_1.5.2-1 python3-packaging_23.0-1 python3-pandas_1.5.3+dfsg-1+rpi1 python3-pandas-lib_1.5.3+dfsg-1+rpi1 python3-pil_9.4.0-1.1 python3-pil.imagetk_9.4.0-1.1 python3-pip_23.0+dfsg-2 python3-pipdeptree_2.2.0-3 python3-pkg-resources_66.1.1-1 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pydantic_1.10.4-1 python3-pygments_2.14.0+dfsg-1 python3-pyparsing_3.0.9-1 python3-pyrsistent_0.18.1-1+b1 python3-pytest_7.2.1-2 python3-pytest-benchmark_3.2.2-3 python3-pytest-mock_3.8.2-3 python3-requests_2.28.1+dfsg-1 python3-rfc3986_1.5.0-2 python3-rich_13.2.0-2 python3-ruamel.yaml_0.17.21-1 python3-ruamel.yaml.clib_0.2.7-1+b1 python3-sbml5_5.19.7+dfsg-2 python3-scipy_1.8.1-22+rpi1 python3-setuptools_66.1.1-1 python3-simplejson_3.18.1-1 python3-six_1.16.0-4 python3-sniffio_1.2.0-1 python3-swiglpk_4.65.1-1+b2 python3-sympy_1.11.1-1 python3-tabulate_0.8.9-1 python3-tk_3.10.8-1 python3-typing-extensions_4.4.0-1 python3-tz_2022.7.1-1 python3-ufolib2_0.14.0+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1+b1 python3-urllib3_1.26.12-1 python3-wheel_0.38.4-1 python3-zipp_1.0.0-6 python3.10_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-dev_3.11.1-2 python3.11-minimal_3.11.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 swig_4.1.0-0.2 swig4.0_4.1.0-0.2 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022f-1 unicode-data_15.0.0-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.75Z7gHCA/trustedkeys.kbx': General error
gpgv: Signature made Sun Feb 5 21:32:48 2023 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-cobra_0.26.2-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.26.2.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.26.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying xfail_test_show_versions.patch
dpkg-source: info: applying ignore_tests.patch
dpkg-source: info: applying do-not-seek-for-name.patch
dpkg-source: info: applying numpy_1.24.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-a64e7cb2-e629-42fb-9966-542b56e7ca7e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.26.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/cobrapy_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
copying src/cobra/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/salmonella.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.1, pytest-7.2.1, pluggy-1.0.0+repack
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, configfile: tox.ini
plugins: anyio-3.6.2, benchmark-3.2.2, mock-3.8.2
collected 549 items
tests/test_core/test_configuration.py ...... [ 1%]
tests/test_core/test_core_reaction.py ..........ss...................... [ 7%]
...................x...... [ 12%]
tests/test_core/test_dictlist.py ...................... [ 16%]
tests/test_core/test_formula.py ..... [ 16%]
tests/test_core/test_gene.py . [ 17%]
tests/test_core/test_gpr.py .....................x..x................... [ 25%]
.......................... [ 29%]
tests/test_core/test_group.py .. [ 30%]
tests/test_core/test_metabolite.py ...ss.ss. [ 31%]
tests/test_core/test_model.py .......................................... [ 39%]
...........s..s.ss. [ 42%]
tests/test_core/test_solution.py .ss [ 43%]
tests/test_flux_analysis/test_deletion.py ....s..... [ 45%]
tests/test_flux_analysis/test_fastcc.py .... [ 46%]
tests/test_flux_analysis/test_geometric.py .. [ 46%]
tests/test_flux_analysis/test_moma.py . [ 46%]
tests/test_flux_analysis/test_parsimonious.py .. [ 46%]
tests/test_flux_analysis/test_reaction.py . [ 47%]
tests/test_flux_analysis/test_room.py .... [ 47%]
tests/test_flux_analysis/test_variability.py ....... [ 49%]
tests/test_flux_analysis/test_deletion.py sss [ 49%]
tests/test_flux_analysis/test_moma.py s [ 49%]
tests/test_flux_analysis/test_deletion.py ...... [ 51%]
tests/test_flux_analysis/test_gapfilling.py . [ 51%]
tests/test_flux_analysis/test_helpers.py ... [ 51%]
tests/test_flux_analysis/test_loopless.py ..... [ 52%]
tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%]
tests/test_flux_analysis/test_variability.py ....... [ 55%]
tests/test_io/test_annotation.py .. [ 55%]
tests/test_io/test_annotation_format.py .. [ 55%]
tests/test_io/test_io_order.py ........................... [ 60%]
tests/test_io/test_json.py .... [ 61%]
tests/test_io/test_mat.py ............... [ 64%]
tests/test_io/test_notes.py . [ 64%]
tests/test_io/test_pickle.py .. [ 64%]
tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............ [ 71%]
tests/test_io/test_yaml.py .x [ 72%]
tests/test_io/test_web/test_load.py ..ssss. [ 73%]
tests/test_manipulation/test_annotate.py . [ 73%]
tests/test_manipulation/test_delete.py ....... [ 75%]
tests/test_manipulation/test_modify.py ... [ 75%]
tests/test_manipulation/test_validate.py .. [ 75%]
tests/test_medium/test_boundary_types.py ......... [ 77%]
tests/test_medium/test_minimal_medium.py .......... [ 79%]
tests/test_sampling/test_achr.py ...... [ 80%]
tests/test_sampling/test_optgp.py ...... [ 81%]
tests/test_sampling/test_sampling.py .......... [ 83%]
tests/test_summary/test_metabolite_summary.py ................. [ 86%]
tests/test_summary/test_model_summary.py ............... [ 89%]
tests/test_summary/test_reaction_summary.py .................... [ 92%]
tests/test_util/test_array.py .. [ 93%]
tests/test_util/test_context.py ... [ 93%]
tests/test_util/test_process_pool.py ............... [ 96%]
tests/test_util/test_solver.py ..............s [ 99%]
tests/test_util/test_util.py ...x [100%]
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/importlib_resources/_py3.py:13
../../../../../../usr/lib/python3/dist-packages/importlib_resources/_py3.py:13
/usr/lib/python3/dist-packages/importlib_resources/_py3.py:13: DeprecationWarning: typing.io is deprecated, import directly from typing instead. typing.io will be removed in Python 3.12.
from typing.io import BinaryIO, TextIO
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'.
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead
warn(
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements
.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list
warn("need to pass in a list")
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead.
warn("Please use reaction.flux instead.", DeprecationWarning)
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 6 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 14 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 2 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 18 warnings
.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 2 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'.
warn(f"Solver status is '{status}'.", UserWarning)
.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 45 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py:112: FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
medium = pd.Series()
.pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://github.com/pytest-dev/pytest-mock#note-about-usage-as-context-manager
self._pool.__enter__()
.pybuild/cpython3_3.11_cobra/build/tests/test_util/test_util.py::test_show_versions
/usr/lib/python3/dist-packages/depinfo/application/compatibility.py:26: DeprecationWarning: The function 'print_dependencies' is deprecated since version 2.0.0. Please use either the command line interface with command 'depinfo' or import 'depinfo.application.DisplayApplication' in your Python project.
warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
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Computing stats ... group 1/1: min (13/31)
Computing stats ... group 1/1: min (14/31)
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Computing stats ... group 1/1: min (16/31)
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Computing stats ... group 1/1: min (23/31)
Computing stats ... group 1/1: min (24/31)
Computing stats ... group 1/1: min (25/31)
Computing stats ... group 1/1: min (26/31)
Computing stats ... group 1/1: min (27/31)
Computing stats ... group 1/1: min (28/31)
Computing stats ... group 1/1: min (29/31)
Computing stats ... group 1/1: min (30/31)
Computing stats ... group 1/1: min (31/31)
Computing stats ... group 1/1: max
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Computing stats ... group 1/1: max (2/31)
Computing stats ... group 1/1: max (3/31)
Computing stats ... group 1/1: max (4/31)
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Computing stats ... group 1/1: max (7/31)
Computing stats ... group 1/1: max (8/31)
Computing stats ... group 1/1: max (9/31)
Computing stats ... group 1/1: max (10/31)
Computing stats ... group 1/1: max (11/31)
Computing stats ... group 1/1: max (12/31)
Computing stats ... group 1/1: max (13/31)
Computing stats ... group 1/1: max (14/31)
Computing stats ... group 1/1: max (15/31)
Computing stats ... group 1/1: max (16/31)
Computing stats ... group 1/1: max (17/31)
Computing stats ... group 1/1: max (18/31)
Computing stats ... group 1/1: max (19/31)
Computing stats ... group 1/1: max (20/31)
Computing stats ... group 1/1: max (21/31)
Computing stats ... group 1/1: max (22/31)
Computing stats ... group 1/1: max (23/31)
Computing stats ... group 1/1: max (24/31)
Computing stats ... group 1/1: max (25/31)
Computing stats ... group 1/1: max (26/31)
Computing stats ... group 1/1: max (27/31)
Computing stats ... group 1/1: max (28/31)
Computing stats ... group 1/1: max (29/31)
Computing stats ... group 1/1: max (30/31)
Computing stats ... group 1/1: max (31/31)
Computing stats ... group 1/1: max (1/31)
Computing stats ... group 1/1: max (2/31)
Computing stats ... group 1/1: max (3/31)
Computing stats ... group 1/1: max (4/31)
Computing stats ... group 1/1: max (5/31)
Computing stats ... group 1/1: max (6/31)
Computing stats ... group 1/1: max (7/31)
Computing stats ... group 1/1: max (8/31)
Computing stats ... group 1/1: max (9/31)
Computing stats ... group 1/1: max (10/31)
Computing stats ... group 1/1: max (11/31)
Computing stats ... group 1/1: max (12/31)
Computing stats ... group 1/1: max (13/31)
Computing stats ... group 1/1: max (14/31)
Computing stats ... group 1/1: max (15/31)
Computing stats ... group 1/1: max (16/31)
Computing stats ... group 1/1: max (17/31)
Computing stats ... group 1/1: max (18/31)
Computing stats ... group 1/1: max (19/31)
Computing stats ... group 1/1: max (20/31)
Computing stats ... group 1/1: max (21/31)
Computing stats ... group 1/1: max (22/31)
Computing stats ... group 1/1: max (23/31)
Computing stats ... group 1/1: max (24/31)
Computing stats ... group 1/1: max (25/31)
Computing stats ... group 1/1: max (26/31)
Computing stats ... group 1/1: max (27/31)
Computing stats ... group 1/1: max (28/31)
Computing stats ... group 1/1: max (29/31)
Computing stats ... group 1/1: max (30/31)
Computing stats ... group 1/1: max (31/31)
Computing stats ... group 1/1: mean
Computing stats ... group 1/1: mean (1/31)
Computing stats ... group 1/1: mean (2/31)
Computing stats ... group 1/1: mean (3/31)
Computing stats ... group 1/1: mean (4/31)
Computing stats ... group 1/1: mean (5/31)
Computing stats ... group 1/1: mean (6/31)
Computing stats ... group 1/1: mean (7/31)
Computing stats ... group 1/1: mean (8/31)
Computing stats ... group 1/1: mean (9/31)
Computing stats ... group 1/1: mean (10/31)
Computing stats ... group 1/1: mean (11/31)
Computing stats ... group 1/1: mean (12/31)
Computing stats ... group 1/1: mean (13/31)
Computing stats ... group 1/1: mean (14/31)
Computing stats ... group 1/1: mean (15/31)
Computing stats ... group 1/1: mean (16/31)
Computing stats ... group 1/1: mean (17/31)
Computing stats ... group 1/1: mean (18/31)
Computing stats ... group 1/1: mean (19/31)
Computing stats ... group 1/1: mean (20/31)
Computing stats ... group 1/1: mean (21/31)
Computing stats ... group 1/1: mean (22/31)
Computing stats ... group 1/1: mean (23/31)
Computing stats ... group 1/1: mean (24/31)
Computing stats ... group 1/1: mean (25/31)
Computing stats ... group 1/1: mean (26/31)
Computing stats ... group 1/1: mean (27/31)
Computing stats ... group 1/1: mean (28/31)
Computing stats ... group 1/1: mean (29/31)
Computing stats ... group 1/1: mean (30/31)
Computing stats ... group 1/1: mean (31/31)
Computing stats ... group 1/1: mean (1/31)
Computing stats ... group 1/1: mean (2/31)
Computing stats ... group 1/1: mean (3/31)
Computing stats ... group 1/1: mean (4/31)
Computing stats ... group 1/1: mean (5/31)
Computing stats ... group 1/1: mean (6/31)
Computing stats ... group 1/1: mean (7/31)
Computing stats ... group 1/1: mean (8/31)
Computing stats ... group 1/1: mean (9/31)
Computing stats ... group 1/1: mean (10/31)
Computing stats ... group 1/1: mean (11/31)
Computing stats ... group 1/1: mean (12/31)
Computing stats ... group 1/1: mean (13/31)
Computing stats ... group 1/1: mean (14/31)
Computing stats ... group 1/1: mean (15/31)
Computing stats ... group 1/1: mean (16/31)
Computing stats ... group 1/1: mean (17/31)
Computing stats ... group 1/1: mean (18/31)
Computing stats ... group 1/1: mean (19/31)
Computing stats ... group 1/1: mean (20/31)
Computing stats ... group 1/1: mean (21/31)
Computing stats ... group 1/1: mean (22/31)
Computing stats ... group 1/1: mean (23/31)
Computing stats ... group 1/1: mean (24/31)
Computing stats ... group 1/1: mean (25/31)
Computing stats ... group 1/1: mean (26/31)
Computing stats ... group 1/1: mean (27/31)
Computing stats ... group 1/1: mean (28/31)
Computing stats ... group 1/1: mean (29/31)
Computing stats ... group 1/1: mean (30/31)
Computing stats ... group 1/1: mean (31/31)
Computing stats ... group 1/1: median
Computing stats ... group 1/1: median (1/31)
Computing stats ... group 1/1: median (2/31)
Computing stats ... group 1/1: median (3/31)
Computing stats ... group 1/1: median (4/31)
Computing stats ... group 1/1: median (5/31)
Computing stats ... group 1/1: median (6/31)
Computing stats ... group 1/1: median (7/31)
Computing stats ... group 1/1: median (8/31)
Computing stats ... group 1/1: median (9/31)
Computing stats ... group 1/1: median (10/31)
Computing stats ... group 1/1: median (11/31)
Computing stats ... group 1/1: median (12/31)
Computing stats ... group 1/1: median (13/31)
Computing stats ... group 1/1: median (14/31)
Computing stats ... group 1/1: median (15/31)
Computing stats ... group 1/1: median (16/31)
Computing stats ... group 1/1: median (17/31)
Computing stats ... group 1/1: median (18/31)
Computing stats ... group 1/1: median (19/31)
Computing stats ... group 1/1: median (20/31)
Computing stats ... group 1/1: median (21/31)
Computing stats ... group 1/1: median (22/31)
Computing stats ... group 1/1: median (23/31)
Computing stats ... group 1/1: median (24/31)
Computing stats ... group 1/1: median (25/31)
Computing stats ... group 1/1: median (26/31)
Computing stats ... group 1/1: median (27/31)
Computing stats ... group 1/1: median (28/31)
Computing stats ... group 1/1: median (29/31)
Computing stats ... group 1/1: median (30/31)
Computing stats ... group 1/1: median (31/31)
Computing stats ... group 1/1: median (1/31)
Computing stats ... group 1/1: median (2/31)
Computing stats ... group 1/1: median (3/31)
Computing stats ... group 1/1: median (4/31)
Computing stats ... group 1/1: median (5/31)
Computing stats ... group 1/1: median (6/31)
Computing stats ... group 1/1: median (7/31)
Computing stats ... group 1/1: median (8/31)
Computing stats ... group 1/1: median (9/31)
Computing stats ... group 1/1: median (10/31)
Computing stats ... group 1/1: median (11/31)
Computing stats ... group 1/1: median (12/31)
Computing stats ... group 1/1: median (13/31)
Computing stats ... group 1/1: median (14/31)
Computing stats ... group 1/1: median (15/31)
Computing stats ... group 1/1: median (16/31)
Computing stats ... group 1/1: median (17/31)
Computing stats ... group 1/1: median (18/31)
Computing stats ... group 1/1: median (19/31)
Computing stats ... group 1/1: median (20/31)
Computing stats ... group 1/1: median (21/31)
Computing stats ... group 1/1: median (22/31)
Computing stats ... group 1/1: median (23/31)
Computing stats ... group 1/1: median (24/31)
Computing stats ... group 1/1: median (25/31)
Computing stats ... group 1/1: median (26/31)
Computing stats ... group 1/1: median (27/31)
Computing stats ... group 1/1: median (28/31)
Computing stats ... group 1/1: median (29/31)
Computing stats ... group 1/1: median (30/31)
Computing stats ... group 1/1: median (31/31)
Computing stats ... group 1/1: iqr
Computing stats ... group 1/1: iqr (1/31)
Computing stats ... group 1/1: iqr (2/31)
Computing stats ... group 1/1: iqr (3/31)
Computing stats ... group 1/1: iqr (4/31)
Computing stats ... group 1/1: iqr (5/31)
Computing stats ... group 1/1: iqr (6/31)
Computing stats ... group 1/1: iqr (7/31)
Computing stats ... group 1/1: iqr (8/31)
Computing stats ... group 1/1: iqr (9/31)
Computing stats ... group 1/1: iqr (10/31)
Computing stats ... group 1/1: iqr (11/31)
Computing stats ... group 1/1: iqr (12/31)
Computing stats ... group 1/1: iqr (13/31)
Computing stats ... group 1/1: iqr (14/31)
Computing stats ... group 1/1: iqr (15/31)
Computing stats ... group 1/1: iqr (16/31)
Computing stats ... group 1/1: iqr (17/31)
Computing stats ... group 1/1: iqr (18/31)
Computing stats ... group 1/1: iqr (19/31)
Computing stats ... group 1/1: iqr (20/31)
Computing stats ... group 1/1: iqr (21/31)
Computing stats ... group 1/1: iqr (22/31)
Computing stats ... group 1/1: iqr (23/31)
Computing stats ... group 1/1: iqr (24/31)
Computing stats ... group 1/1: iqr (25/31)
Computing stats ... group 1/1: iqr (26/31)
Computing stats ... group 1/1: iqr (27/31)
Computing stats ... group 1/1: iqr (28/31)
Computing stats ... group 1/1: iqr (29/31)
Computing stats ... group 1/1: iqr (30/31)
Computing stats ... group 1/1: iqr (31/31)
Computing stats ... group 1/1: iqr (1/31)
Computing stats ... group 1/1: iqr (2/31)
Computing stats ... group 1/1: iqr (3/31)
Computing stats ... group 1/1: iqr (4/31)
Computing stats ... group 1/1: iqr (5/31)
Computing stats ... group 1/1: iqr (6/31)
Computing stats ... group 1/1: iqr (7/31)
Computing stats ... group 1/1: iqr (8/31)
Computing stats ... group 1/1: iqr (9/31)
Computing stats ... group 1/1: iqr (10/31)
Computing stats ... group 1/1: iqr (11/31)
Computing stats ... group 1/1: iqr (12/31)
Computing stats ... group 1/1: iqr (13/31)
Computing stats ... group 1/1: iqr (14/31)
Computing stats ... group 1/1: iqr (15/31)
Computing stats ... group 1/1: iqr (16/31)
Computing stats ... group 1/1: iqr (17/31)
Computing stats ... group 1/1: iqr (18/31)
Computing stats ... group 1/1: iqr (19/31)
Computing stats ... group 1/1: iqr (20/31)
Computing stats ... group 1/1: iqr (21/31)
Computing stats ... group 1/1: iqr (22/31)
Computing stats ... group 1/1: iqr (23/31)
Computing stats ... group 1/1: iqr (24/31)
Computing stats ... group 1/1: iqr (25/31)
Computing stats ... group 1/1: iqr (26/31)
Computing stats ... group 1/1: iqr (27/31)
Computing stats ... group 1/1: iqr (28/31)
Computing stats ... group 1/1: iqr (29/31)
Computing stats ... group 1/1: iqr (30/31)
Computing stats ... group 1/1: iqr (31/31)
Computing stats ... group 1/1: stddev
Computing stats ... group 1/1: stddev (1/31)
Computing stats ... group 1/1: stddev (2/31)
Computing stats ... group 1/1: stddev (3/31)
Computing stats ... group 1/1: stddev (4/31)
Computing stats ... group 1/1: stddev (5/31)
Computing stats ... group 1/1: stddev (6/31)
Computing stats ... group 1/1: stddev (7/31)
Computing stats ... group 1/1: stddev (8/31)
Computing stats ... group 1/1: stddev (9/31)
Computing stats ... group 1/1: stddev (10/31)
Computing stats ... group 1/1: stddev (11/31)
Computing stats ... group 1/1: stddev (12/31)
Computing stats ... group 1/1: stddev (13/31)
Computing stats ... group 1/1: stddev (14/31)
Computing stats ... group 1/1: stddev (15/31)
Computing stats ... group 1/1: stddev (16/31)
Computing stats ... group 1/1: stddev (17/31)
Computing stats ... group 1/1: stddev (18/31)
Computing stats ... group 1/1: stddev (19/31)
Computing stats ... group 1/1: stddev (20/31)
Computing stats ... group 1/1: stddev (21/31)
Computing stats ... group 1/1: stddev (22/31)
Computing stats ... group 1/1: stddev (23/31)
Computing stats ... group 1/1: stddev (24/31)
Computing stats ... group 1/1: stddev (25/31)
Computing stats ... group 1/1: stddev (26/31)
Computing stats ... group 1/1: stddev (27/31)
Computing stats ... group 1/1: stddev (28/31)
Computing stats ... group 1/1: stddev (29/31)
Computing stats ... group 1/1: stddev (30/31)
Computing stats ... group 1/1: stddev (31/31)
Computing stats ... group 1/1: stddev (1/31)
Computing stats ... group 1/1: stddev (2/31)
Computing stats ... group 1/1: stddev (3/31)
Computing stats ... group 1/1: stddev (4/31)
Computing stats ... group 1/1: stddev (5/31)
Computing stats ... group 1/1: stddev (6/31)
Computing stats ... group 1/1: stddev (7/31)
Computing stats ... group 1/1: stddev (8/31)
Computing stats ... group 1/1: stddev (9/31)
Computing stats ... group 1/1: stddev (10/31)
Computing stats ... group 1/1: stddev (11/31)
Computing stats ... group 1/1: stddev (12/31)
Computing stats ... group 1/1: stddev (13/31)
Computing stats ... group 1/1: stddev (14/31)
Computing stats ... group 1/1: stddev (15/31)
Computing stats ... group 1/1: stddev (16/31)
Computing stats ... group 1/1: stddev (17/31)
Computing stats ... group 1/1: stddev (18/31)
Computing stats ... group 1/1: stddev (19/31)
Computing stats ... group 1/1: stddev (20/31)
Computing stats ... group 1/1: stddev (21/31)
Computing stats ... group 1/1: stddev (22/31)
Computing stats ... group 1/1: stddev (23/31)
Computing stats ... group 1/1: stddev (24/31)
Computing stats ... group 1/1: stddev (25/31)
Computing stats ... group 1/1: stddev (26/31)
Computing stats ... group 1/1: stddev (27/31)
Computing stats ... group 1/1: stddev (28/31)
Computing stats ... group 1/1: stddev (29/31)
Computing stats ... group 1/1: stddev (30/31)
Computing stats ... group 1/1: stddev (31/31)
Computing stats ... group 1/1: ops
Computing stats ... group 1/1: ops (1/31)
Computing stats ... group 1/1: ops (2/31)
Computing stats ... group 1/1: ops (3/31)
Computing stats ... group 1/1: ops (4/31)
Computing stats ... group 1/1: ops (5/31)
Computing stats ... group 1/1: ops (6/31)
Computing stats ... group 1/1: ops (7/31)
Computing stats ... group 1/1: ops (8/31)
Computing stats ... group 1/1: ops (9/31)
Computing stats ... group 1/1: ops (10/31)
Computing stats ... group 1/1: ops (11/31)
Computing stats ... group 1/1: ops (12/31)
Computing stats ... group 1/1: ops (13/31)
Computing stats ... group 1/1: ops (14/31)
Computing stats ... group 1/1: ops (15/31)
Computing stats ... group 1/1: ops (16/31)
Computing stats ... group 1/1: ops (17/31)
Computing stats ... group 1/1: ops (18/31)
Computing stats ... group 1/1: ops (19/31)
Computing stats ... group 1/1: ops (20/31)
Computing stats ... group 1/1: ops (21/31)
Computing stats ... group 1/1: ops (22/31)
Computing stats ... group 1/1: ops (23/31)
Computing stats ... group 1/1: ops (24/31)
Computing stats ... group 1/1: ops (25/31)
Computing stats ... group 1/1: ops (26/31)
Computing stats ... group 1/1: ops (27/31)
Computing stats ... group 1/1: ops (28/31)
Computing stats ... group 1/1: ops (29/31)
Computing stats ... group 1/1: ops (30/31)
Computing stats ... group 1/1: ops (31/31)
Computing stats ... group 1/1: ops (1/31)
Computing stats ... group 1/1: ops (2/31)
Computing stats ... group 1/1: ops (3/31)
Computing stats ... group 1/1: ops (4/31)
Computing stats ... group 1/1: ops (5/31)
Computing stats ... group 1/1: ops (6/31)
Computing stats ... group 1/1: ops (7/31)
Computing stats ... group 1/1: ops (8/31)
Computing stats ... group 1/1: ops (9/31)
Computing stats ... group 1/1: ops (10/31)
Computing stats ... group 1/1: ops (11/31)
Computing stats ... group 1/1: ops (12/31)
Computing stats ... group 1/1: ops (13/31)
Computing stats ... group 1/1: ops (14/31)
Computing stats ... group 1/1: ops (15/31)
Computing stats ... group 1/1: ops (16/31)
Computing stats ... group 1/1: ops (17/31)
Computing stats ... group 1/1: ops (18/31)
Computing stats ... group 1/1: ops (19/31)
Computing stats ... group 1/1: ops (20/31)
Computing stats ... group 1/1: ops (21/31)
Computing stats ... group 1/1: ops (22/31)
Computing stats ... group 1/1: ops (23/31)
Computing stats ... group 1/1: ops (24/31)
Computing stats ... group 1/1: ops (25/31)
Computing stats ... group 1/1: ops (26/31)
Computing stats ... group 1/1: ops (27/31)
Computing stats ... group 1/1: ops (28/31)
Computing stats ... group 1/1: ops (29/31)
Computing stats ... group 1/1: ops (30/31)
Computing stats ... group 1/1: ops (31/31)
Computing stats ... group 1/1: ops: outliers
Computing stats ... group 1/1: ops: outliers (1/31)
Computing stats ... group 1/1: ops: outliers (2/31)
Computing stats ... group 1/1: ops: outliers (3/31)
Computing stats ... group 1/1: ops: outliers (4/31)
Computing stats ... group 1/1: ops: outliers (5/31)
Computing stats ... group 1/1: ops: outliers (6/31)
Computing stats ... group 1/1: ops: outliers (7/31)
Computing stats ... group 1/1: ops: outliers (8/31)
Computing stats ... group 1/1: ops: outliers (9/31)
Computing stats ... group 1/1: ops: outliers (10/31)
Computing stats ... group 1/1: ops: outliers (11/31)
Computing stats ... group 1/1: ops: outliers (12/31)
Computing stats ... group 1/1: ops: outliers (13/31)
Computing stats ... group 1/1: ops: outliers (14/31)
Computing stats ... group 1/1: ops: outliers (15/31)
Computing stats ... group 1/1: ops: outliers (16/31)
Computing stats ... group 1/1: ops: outliers (17/31)
Computing stats ... group 1/1: ops: outliers (18/31)
Computing stats ... group 1/1: ops: outliers (19/31)
Computing stats ... group 1/1: ops: outliers (20/31)
Computing stats ... group 1/1: ops: outliers (21/31)
Computing stats ... group 1/1: ops: outliers (22/31)
Computing stats ... group 1/1: ops: outliers (23/31)
Computing stats ... group 1/1: ops: outliers (24/31)
Computing stats ... group 1/1: ops: outliers (25/31)
Computing stats ... group 1/1: ops: outliers (26/31)
Computing stats ... group 1/1: ops: outliers (27/31)
Computing stats ... group 1/1: ops: outliers (28/31)
Computing stats ... group 1/1: ops: outliers (29/31)
Computing stats ... group 1/1: ops: outliers (30/31)
Computing stats ... group 1/1: ops: outliers (31/31)
Computing stats ... group 1/1: ops: rounds
Computing stats ... group 1/1: ops: rounds (1/31)
Computing stats ... group 1/1: ops: rounds (2/31)
Computing stats ... group 1/1: ops: rounds (3/31)
Computing stats ... group 1/1: ops: rounds (4/31)
Computing stats ... group 1/1: ops: rounds (5/31)
Computing stats ... group 1/1: ops: rounds (6/31)
Computing stats ... group 1/1: ops: rounds (7/31)
Computing stats ... group 1/1: ops: rounds (8/31)
Computing stats ... group 1/1: ops: rounds (9/31)
Computing stats ... group 1/1: ops: rounds (10/31)
Computing stats ... group 1/1: ops: rounds (11/31)
Computing stats ... group 1/1: ops: rounds (12/31)
Computing stats ... group 1/1: ops: rounds (13/31)
Computing stats ... group 1/1: ops: rounds (14/31)
Computing stats ... group 1/1: ops: rounds (15/31)
Computing stats ... group 1/1: ops: rounds (16/31)
Computing stats ... group 1/1: ops: rounds (17/31)
Computing stats ... group 1/1: ops: rounds (18/31)
Computing stats ... group 1/1: ops: rounds (19/31)
Computing stats ... group 1/1: ops: rounds (20/31)
Computing stats ... group 1/1: ops: rounds (21/31)
Computing stats ... group 1/1: ops: rounds (22/31)
Computing stats ... group 1/1: ops: rounds (23/31)
Computing stats ... group 1/1: ops: rounds (24/31)
Computing stats ... group 1/1: ops: rounds (25/31)
Computing stats ... group 1/1: ops: rounds (26/31)
Computing stats ... group 1/1: ops: rounds (27/31)
Computing stats ... group 1/1: ops: rounds (28/31)
Computing stats ... group 1/1: ops: rounds (29/31)
Computing stats ... group 1/1: ops: rounds (30/31)
Computing stats ... group 1/1: ops: rounds (31/31)
Computing stats ... group 1/1: ops: iterations
Computing stats ... group 1/1: ops: iterations (1/31)
Computing stats ... group 1/1: ops: iterations (2/31)
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--------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ---------------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[gurobi] 21.6402 (1.0) 72.0397 (1.0) 29.5415 (1.13) 4.8576 (1.0) 30.4207 (1.32) 5.8236 (2.43) 252;9 33,850.7125 (0.88) 927 1
test_subtract_metabolite_benchmark[glpk] 21.6663 (1.00) 504.7247 (7.01) 26.0423 (1.0) 16.0761 (3.31) 22.9627 (1.0) 6.2995 (2.63) 9;11 38,399.0543 (1.0) 959 1
test_subtract_metabolite_benchmark[cplex] 21.9829 (1.02) 197.8800 (2.75) 32.0304 (1.23) 6.4462 (1.33) 31.9593 (1.39) 2.3991 (1.0) 47;63 31,220.3745 (0.81) 910 1
test_change_objective_benchmark[optlang-glpk] 1,448.2364 (66.92) 4,557.5276 (63.26) 1,686.0776 (64.74) 116.2492 (23.93) 1,681.0410 (73.21) 53.6311 (22.35) 17;22 593.0925 (0.02) 747 1
test_achr_sample_benchmark 1,493.9159 (69.03) 2,183.5417 (30.31) 1,748.3707 (67.14) 100.2563 (20.64) 1,758.6891 (76.59) 127.8035 (53.27) 99;2 571.9611 (0.01) 326 1
test_optgp_sample_benchmark 2,164.3415 (100.01) 2,904.2326 (40.31) 2,670.7424 (102.55) 109.2877 (22.50) 2,687.2717 (117.03) 112.2244 (46.78) 57;11 374.4277 (0.01) 298 1
test_loopless_benchmark_after 8,616.6188 (398.18) 9,732.1719 (135.09) 8,977.6992 (344.74) 218.6791 (45.02) 8,958.8929 (390.15) 298.0679 (124.24) 18;1 111.3871 (0.00) 58 1
test_loopless_benchmark_before 34,903.0085 (>1000.0) 39,077.3937 (542.44) 36,362.1563 (>1000.0) 1,203.5866 (247.77) 36,000.4343 (>1000.0) 1,682.5497 (701.33) 7;0 27.5011 (0.00) 20 1
test_minimal_medium_mip_benchmark 38,891.3788 (>1000.0) 41,997.6935 (582.98) 41,057.8298 (>1000.0) 767.2458 (157.95) 41,215.0659 (>1000.0) 577.8354 (240.86) 4;1 24.3559 (0.00) 15 1
test_minimal_medium_linear_benchmark 41,441.6082 (>1000.0) 43,647.5277 (605.88) 42,486.6353 (>1000.0) 687.8300 (141.60) 42,569.8757 (>1000.0) 1,093.2321 (455.69) 5;0 23.5368 (0.00) 15 1
test_single_reaction_deletion_benchmark[glpk] 100,300.4387 (>1000.0) 109,792.3629 (>1000.0) 104,677.3631 (>1000.0) 2,860.0902 (588.78) 104,251.6623 (>1000.0) 3,938.2987 (>1000.0) 3;0 9.5532 (0.00) 10 1
test_copy_benchmark[optlang-glpk] 124,839.0488 (>1000.0) 143,371.5634 (>1000.0) 134,238.6385 (>1000.0) 6,213.6880 (>1000.0) 135,122.4631 (>1000.0) 8,164.1199 (>1000.0) 2;0 7.4494 (0.00) 7 1
test_deepcopy_benchmark 196,997.6574 (>1000.0) 204,136.5355 (>1000.0) 201,368.2667 (>1000.0) 2,971.1712 (611.65) 201,912.5670 (>1000.0) 4,594.2329 (>1000.0) 1;0 4.9660 (0.00) 6 1
test_gpr_equality_benchmark 200,357.4930 (>1000.0) 212,257.9627 (>1000.0) 208,422.2570 (>1000.0) 4,738.5738 (975.49) 210,222.6205 (>1000.0) 5,062.4041 (>1000.0) 1;0 4.7980 (0.00) 5 1
test_single_gene_deletion_fba_benchmark[glpk] 434,045.4973 (>1000.0) 579,802.3604 (>1000.0) 505,564.8372 (>1000.0) 68,222.6756 (>1000.0) 474,793.8514 (>1000.0) 122,938.4728 (>1000.0) 3;0 1.9780 (0.00) 5 1
test_fastcc_benchmark[glpk] 451,216.5673 (>1000.0) 486,179.2177 (>1000.0) 464,341.3156 (>1000.0) 15,140.5378 (>1000.0) 455,521.1999 (>1000.0) 23,360.4843 (>1000.0) 1;0 2.1536 (0.00) 5 1
test_achr_init_benchmark 493,141.6586 (>1000.0) 508,176.8036 (>1000.0) 501,128.6549 (>1000.0) 6,204.0156 (>1000.0) 500,247.8994 (>1000.0) 10,302.2531 (>1000.0) 2;0 1.9955 (0.00) 5 1
test_add_metabolite_benchmark[gurobi] 495,520.0143 (>1000.0) 535,751.8531 (>1000.0) 521,551.7610 (>1000.0) 15,888.2563 (>1000.0) 523,867.9051 (>1000.0) 19,533.8354 (>1000.0) 1;0 1.9174 (0.00) 5 1
test_optgp_init_benchmark 496,892.1393 (>1000.0) 519,870.0391 (>1000.0) 504,005.1922 (>1000.0) 9,073.1599 (>1000.0) 501,096.5466 (>1000.0) 7,029.8538 (>1000.0) 1;1 1.9841 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 522,505.2759 (>1000.0) 541,713.5470 (>1000.0) 536,097.1726 (>1000.0) 7,822.0868 (>1000.0) 538,288.7870 (>1000.0) 7,593.6159 (>1000.0) 1;0 1.8653 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 528,953.3176 (>1000.0) 539,338.9799 (>1000.0) 535,551.2038 (>1000.0) 4,182.9583 (861.11) 535,309.8512 (>1000.0) 5,480.7961 (>1000.0) 1;0 1.8672 (0.00) 5 1
test_double_gene_deletion_benchmark 560,889.4043 (>1000.0) 597,606.8191 (>1000.0) 575,806.4955 (>1000.0) 13,952.7037 (>1000.0) 572,281.9120 (>1000.0) 17,589.7330 (>1000.0) 2;0 1.7367 (0.00) 5 1
test_single_gene_deletion_linear_moma_benchmark[glpk] 1,238,032.9780 (>1000.0) 1,362,127.8405 (>1000.0) 1,279,849.3475 (>1000.0) 50,490.7326 (>1000.0) 1,260,031.8603 (>1000.0) 65,768.4533 (>1000.0) 1;0 0.7813 (0.00) 5 1
test_gpr_symbolism_benchmark 1,350,793.3989 (>1000.0) 1,449,916.4633 (>1000.0) 1,400,857.5805 (>1000.0) 39,989.0844 (>1000.0) 1,405,645.0501 (>1000.0) 65,214.5864 (>1000.0) 2;0 0.7138 (0.00) 5 1
test_pfba_benchmark[glpk] 1,645,650.7146 (>1000.0) 2,439,355.3883 (>1000.0) 1,903,691.3127 (>1000.0) 337,975.1026 (>1000.0) 1,715,207.0291 (>1000.0) 466,520.4948 (>1000.0) 1;0 0.5253 (0.00) 5 1
test_single_gene_deletion_linear_room_benchmark[glpk] 1,877,775.3524 (>1000.0) 2,952,367.1940 (>1000.0) 2,208,697.1246 (>1000.0) 441,883.9282 (>1000.0) 2,101,427.5067 (>1000.0) 529,160.1121 (>1000.0) 1;0 0.4528 (0.00) 5 1
test_geometric_fba_benchmark[glpk] 2,163,843.8627 (>1000.0) 2,376,462.8582 (>1000.0) 2,230,557.4417 (>1000.0) 86,109.3147 (>1000.0) 2,204,034.4924 (>1000.0) 98,524.3730 (>1000.0) 1;0 0.4483 (0.00) 5 1
test_flux_variability_loopless_benchmark[glpk] 2,862,108.4020 (>1000.0) 3,001,489.4158 (>1000.0) 2,928,699.6827 (>1000.0) 68,004.3729 (>1000.0) 2,919,589.5419 (>1000.0) 133,654.1679 (>1000.0) 1;0 0.3414 (0.00) 5 1
test_copy_benchmark_large_model[optlang-glpk] 3,098,727.1033 (>1000.0) 4,163,713.2689 (>1000.0) 3,669,258.3650 (>1000.0) 520,452.7721 (>1000.0) 3,831,001.5127 (>1000.0) 1,003,891.6804 (>1000.0) 2;0 0.2725 (0.00) 5 1
test_double_reaction_deletion_benchmark 7,643,775.3513 (>1000.0) 8,122,718.5689 (>1000.0) 7,880,289.0047 (>1000.0) 192,941.7541 (>1000.0) 7,866,114.6648 (>1000.0) 315,197.5675 (>1000.0) 2;0 0.1269 (0.00) 5 1
test_flux_variability_benchmark[glpk] 12,888,727.0130 (>1000.0) 13,320,606.9358 (>1000.0) 13,167,775.0498 (>1000.0) 165,080.1634 (>1000.0) 13,199,143.6630 (>1000.0) 158,820.1094 (>1000.0) 1;0 0.0759 (0.00) 5 1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
==== 511 passed, 27 skipped, 11 xfailed, 141 warnings in 836.48s (0:13:56) =====
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc
running install_egg_info
running egg_info
creating src/cobra.egg-info
writing src/cobra.egg-info/PKG-INFO
writing dependency_links to src/cobra.egg-info/dependency_links.txt
writing requirements to src/cobra.egg-info/requires.txt
writing top-level names to src/cobra.egg-info/top_level.txt
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
Copying src/cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.26.2.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.26.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-cobra_0.26.2-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../python-cobra_0.26.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-11T07:04:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.26.2-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Sun, 05 Feb 2023 22:14:10 +0100
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.26.2-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Changes:
python-cobra (0.26.2-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 0.26.2
* d/t/run-unit-test: avoid interfering with user's home.
* d/python-cobra-data.lintian-overrides: update overrides.
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cobra_0.26.2-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 1118596 bytes: control archive=3532 bytes.
1217 bytes, 19 lines control
7584 bytes, 84 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
386 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.26.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1873
Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang, python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 4.65.1), python3:any, python-cobra-data (= 0.26.2-1), python3-simplejson, python3-tabulate, python3-sbml5
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: https://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
drwxr-xr-x root/root 0 2023-02-05 21:14 ./
drwxr-xr-x root/root 0 2023-02-05 21:14 ./usr/
drwxr-xr-x root/root 0 2023-02-05 21:14 ./usr/lib/
drwxr-xr-x root/root 0 2023-02-05 21:14 ./usr/lib/python3/
drwxr-xr-x root/root 0 2023-02-05 21:14 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2023-02-05 21:14 ./usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/
-rw-r--r-- root/root 8718 2023-02-05 21:14 ./usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2023-02-05 21:14 ./usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 79 2023-02-05 21:14 ./usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/requires.txt
-rw-r--r-- root/root 6 2023-02-05 21:14 ./usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/top_level.txt
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 19464
Build-Time: 877
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1016
Job: python-cobra_0.26.2-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1917
Source-Version: 0.26.2-1
Space: 19464
Status: successful
Version: 0.26.2-1
--------------------------------------------------------------------------------
Finished at 2023-02-11T07:04:47Z
Build needed 00:31:57, 19464k disk space